kineticstools →
0.6.1+git20220223.1326a4d+dfsg-2+b1 →
armhf → 2023-01-30 11:53:56
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| kineticstools 0.6.1+git20220223.1326a4d+dfsg-2+b1 (armhf) Mon, 30 Jan 2023 11:20:21 +0000 |
+==============================================================================+
Package: kineticstools
Version: 0.6.1+git20220223.1326a4d+dfsg-2+b1
Source Version: 0.6.1+git20220223.1326a4d+dfsg-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-4bfb8fd3-9ce2-49b9-8f92-e8061bf23aa1' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.6 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.4 MB]
Fetched 28.1 MB in 29s (968 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'kineticstools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/kineticstools.git
Please use:
git clone https://salsa.debian.org/med-team/kineticstools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 21.8 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main kineticstools 0.6.1+git20220223.1326a4d+dfsg-2 (dsc) [2101 B]
Get:2 http://172.17.4.1/private bookworm-staging/main kineticstools 0.6.1+git20220223.1326a4d+dfsg-2 (tar) [21.8 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main kineticstools 0.6.1+git20220223.1326a4d+dfsg-2 (diff) [10.4 kB]
Fetched 21.8 MB in 2s (12.8 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/kineticstools-PrOQfl/kineticstools-0.6.1+git20220223.1326a4d+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kineticstools-PrOQfl' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ghjhth/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ghjhth/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ghjhth/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2699 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 89 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12958 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
dpkg-deb: building package 'sbuild-build-depends-kineticstools-dummy' in '/<<BUILDDIR>>/resolver-ghjhth/apt_archive/sbuild-build-depends-kineticstools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-kineticstools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ Sources [582 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ Packages [652 B]
Fetched 2567 B in 1s (3195 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install kineticstools build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils
binutils-arm-linux-gnueabihf binutils-common bsdextrautils ca-certificates
cpp-12 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
docutils-common dwz file fonts-urw-base35 g++-12 gcc-12 gcc-12-base gettext
gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl libasan8
libatomic1 libbinutils libblas3 libbrotli1 libbsd0 libcc1-0 libctf-nobfd0
libctf0 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libelf1
libexpat1 libfile-stripnondeterminism-perl libfontenc1 libfreetype6
libfribidi0 libgcc-12-dev libgcc-s1 libgfortran5 libglib2.0-0 libgomp1
libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhts3
libhtscodecs2 libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4
liblzf1 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7
libpipeline1 libpng16-16 libpsl5 libpython3-stdlib libpython3.10-minimal
libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libraqm0
librtmp1 libssh2-1 libssl3 libstdc++-12-dev libstdc++6 libsub-override-perl
libsz2 libtiff6 libtool libubsan1 libuchardet0 libwebp7 libwebpdemux2
libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types
mime-support openssl po-debconf python3 python3-attr python3-avro
python3-biopython python3-certifi python3-chardet python3-charset-normalizer
python3-decorator python3-distutils python3-docutils python3-exceptiongroup
python3-execnet python3-h5py python3-h5py-serial python3-idna
python3-iniconfig python3-iso8601 python3-lib2to3 python3-minimal
python3-more-itertools python3-numpy python3-packaging python3-pbcommand
python3-pbcore python3-pil python3-pkg-resources python3-pluggy python3-py
python3-pysam python3-pytest python3-pytest-runner python3-pytest-xdist
python3-renderpm python3-reportlab python3-reportlab-accel python3-requests
python3-roman python3-scipy python3-setuptools python3-six python3-tomli
python3-tz python3-uritools python3-urllib3 python3.10 python3.10-minimal
python3.11 python3.11-minimal w3c-sgml-lib x11-common xfonts-encodings
xfonts-utils xml-core
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales
cpp-12-doc dh-make flit python3-build python3-installer fonts-freefont-otf
| fonts-freefont-ttf fonts-texgyre gcc-12-doc gettext-doc libasprintf-dev
libgettextpo-dev groff low-memory-monitor liblcms2-utils libstdc++-12-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft
muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib
python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise
docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
texlive-latex-base texlive-latex-recommended execnet-doc python-h5py-doc
gfortran python3-dev python-pbcore-doc python-pil-doc subversion pdf-viewer
python3-egenix-mxtexttools python-reportlab-doc python3-cryptography
python3-openssl python3-socks python-requests-doc python-scipy-doc
python-setuptools-doc python3-brotli python3.10-venv python3.10-doc
binfmt-support python3.11-venv python3.11-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common publicsuffix libltdl-dev
libmail-sendmail-perl python-biopython-doc ncbi-blast+ libpaper-utils
python3-pygments python3-olefile
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
dwz file fonts-urw-base35 gettext gettext-base groff-base intltool-debian
libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcurl3-gnutls
libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1
libfile-stripnondeterminism-perl libfontenc1 libfreetype6 libfribidi0
libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1
libhdf5-hl-100 libhts3 libhtscodecs2 libicu72 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libmagic-mgc libmagic1 libmd0
libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libpsl5
libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib
libpython3.11-minimal libpython3.11-stdlib libraqm0 librtmp1 libssh2-1
libsub-override-perl libsz2 libtiff6 libtool libuchardet0 libwebp7
libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap
man-db media-types mime-support openssl po-debconf python3 python3-attr
python3-avro python3-biopython python3-certifi python3-chardet
python3-charset-normalizer python3-decorator python3-distutils
python3-docutils python3-exceptiongroup python3-execnet python3-h5py
python3-h5py-serial python3-idna python3-iniconfig python3-iso8601
python3-lib2to3 python3-minimal python3-more-itertools python3-numpy
python3-packaging python3-pbcommand python3-pbcore python3-pil
python3-pkg-resources python3-pluggy python3-py python3-pysam python3-pytest
python3-pytest-runner python3-pytest-xdist python3-renderpm
python3-reportlab python3-reportlab-accel python3-requests python3-roman
python3-scipy python3-setuptools python3-six python3-tomli python3-tz
python3-uritools python3-urllib3 python3.10 python3.10-minimal python3.11
python3.11-minimal sbuild-build-depends-kineticstools-dummy w3c-sgml-lib
x11-common xfonts-encodings xfonts-utils xml-core
The following packages will be upgraded:
binutils binutils-arm-linux-gnueabihf binutils-common cpp-12 g++-12 gcc-12
gcc-12-base libasan8 libatomic1 libbinutils libcc1-0 libctf-nobfd0 libctf0
libgcc-12-dev libgcc-s1 libgomp1 libssl3 libstdc++-12-dev libstdc++6
libubsan1
20 upgraded, 143 newly installed, 0 to remove and 69 not upgraded.
Need to get 126 MB of archives.
After this operation, 346 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ghjhth/apt_archive ./ sbuild-build-depends-kineticstools-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-14+rpi1 [861 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-14+rpi1 [37.7 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-14+rpi1 [504 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-14+rpi1 [95.4 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-14+rpi1 [8240 B]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-14+rpi1 [2088 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-14+rpi1 [7159 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-14+rpi1 [32.2 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libctf0 armhf 2.39.90.20221231-1+rpi1 [71.5 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libctf-nobfd0 armhf 2.39.90.20221231-1+rpi1 [133 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf binutils-arm-linux-gnueabihf armhf 2.39.90.20221231-1+rpi1 [2069 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libbinutils armhf 2.39.90.20221231-1+rpi1 [407 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf binutils-common armhf 2.39.90.20221231-1+rpi1 [2354 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf binutils armhf 2.39.90.20221231-1+rpi1 [64.9 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-14+rpi1 [7914 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-14+rpi1 [14.2 MB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-14+rpi1 [727 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-14+rpi1 [2027 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-14+rpi1 [36.3 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-2 [1614 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-minimal armhf 3.11.1-2 [796 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf python3.11-minimal armhf 3.11.1-2 [1678 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.11.1-2 [25.7 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-stdlib armhf 3.11.1-2 [1622 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf python3.11 armhf 3.11.1-2 [567 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.11.1-2 [8704 B]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.11.1-2 [25.4 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.9-1 [769 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.9-1 [1477 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.2-1 [1342 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-2 [1349 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.44-2 [305 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.44-2 [95.3 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.44-2 [41.4 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-2 [256 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1+b1 [571 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.8-1 [139 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.19+dfsg-6 [127 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libfontenc1 armhf 1:1.1.4-1 [22.3 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-4 [329 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf xfonts-utils armhf 1:7.7+6 [82.5 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.87.0-2 [328 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.87.0-2 [332 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.5-1 [1204 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 6.0.0-1 [1886 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.8+repack1-1 [1218 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.8+repack1-1 [64.6 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.3.0-4 [59.5 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.16+ds-3 [367 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 5.3.0-3 [130 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.14-1+b1 [124 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1+b1 [164 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.9-1 [1597 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.4-0.1 [242 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libtiff6 armhf 4.5.0-4 [292 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.4-0.1 [98.4 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.4-0.1 [106 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 22.2.0-1 [65.4 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf python3-avro all 1.11.1+dfsg-2 [70.5 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 65.6.3-1 [278 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.9-1 [509 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.24.1-2 [5318 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf python3-renderpm armhf 3.6.12-1 [65.9 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf python3-reportlab-accel armhf 3.6.12-1 [39.2 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.4.0-1.1 [436 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3-reportlab all 3.6.12-1 [564 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf w3c-sgml-lib all 1.3-3 [273 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python3-biopython armhf 1.80+dfsg-4 [1574 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2022.9.24-1 [153 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 5.1.0+dfsg-2 [110 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 3.0.1-2 [49.3 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 5.1.1-3 [14.9 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-3 [9880 B]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.19+dfsg-6 [382 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-exceptiongroup all 1.1.0-1 [17.4 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3-execnet all 1.9.0-1 [41.5 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.7.0-3+b1 [1076 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py all 3.7.0-3 [9900 B]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-iso8601 all 1.0.2-1 [15.7 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 23.0-1 [32.5 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.12-1 [117 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.28.1+dfsg-1 [67.9 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.7.1-1 [32.1 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-pbcommand all 2.1.1+git20220616.3f2e6c2-2 [90.7 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-pysam armhf 0.20.0+ds-3+rpi1 [2017 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-pbcore all 2.1.2+dfsg-5 [2830 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.11.0-1 [89.2 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-tomli all 2.0.1-2 [17.9 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 7.2.1-1 [233 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 65.6.3-1 [520 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-runner all 2.11.1-4 [8432 B]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-xdist all 3.1.0-1 [39.6 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.8.1-21+rpi1 [14.6 MB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3-uritools all 4.0.0-1 [25.3 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 126 MB in 11s (11.7 MB/s)
(Reading database ... 12958 files and directories currently installed.)
Preparing to unpack .../libubsan1_12.2.0-14+rpi1_armhf.deb ...
Unpacking libubsan1:armhf (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Preparing to unpack .../gcc-12-base_12.2.0-14+rpi1_armhf.deb ...
Unpacking gcc-12-base:armhf (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Setting up gcc-12-base:armhf (12.2.0-14+rpi1) ...
(Reading database ... 12958 files and directories currently installed.)
Preparing to unpack .../libstdc++6_12.2.0-14+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Setting up libstdc++6:armhf (12.2.0-14+rpi1) ...
(Reading database ... 12958 files and directories currently installed.)
Preparing to unpack .../00-libgomp1_12.2.0-14+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Preparing to unpack .../01-libatomic1_12.2.0-14+rpi1_armhf.deb ...
Unpacking libatomic1:armhf (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Preparing to unpack .../02-libasan8_12.2.0-14+rpi1_armhf.deb ...
Unpacking libasan8:armhf (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Preparing to unpack .../03-cpp-12_12.2.0-14+rpi1_armhf.deb ...
Unpacking cpp-12 (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Preparing to unpack .../04-libcc1-0_12.2.0-14+rpi1_armhf.deb ...
Unpacking libcc1-0:armhf (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Preparing to unpack .../05-libctf0_2.39.90.20221231-1+rpi1_armhf.deb ...
Unpacking libctf0:armhf (2.39.90.20221231-1+rpi1) over (2.39.50.20221208-5+rpi1) ...
Preparing to unpack .../06-libctf-nobfd0_2.39.90.20221231-1+rpi1_armhf.deb ...
Unpacking libctf-nobfd0:armhf (2.39.90.20221231-1+rpi1) over (2.39.50.20221208-5+rpi1) ...
Preparing to unpack .../07-binutils-arm-linux-gnueabihf_2.39.90.20221231-1+rpi1_armhf.deb ...
Unpacking binutils-arm-linux-gnueabihf (2.39.90.20221231-1+rpi1) over (2.39.50.20221208-5+rpi1) ...
Preparing to unpack .../08-libbinutils_2.39.90.20221231-1+rpi1_armhf.deb ...
Unpacking libbinutils:armhf (2.39.90.20221231-1+rpi1) over (2.39.50.20221208-5+rpi1) ...
Preparing to unpack .../09-binutils-common_2.39.90.20221231-1+rpi1_armhf.deb ...
Unpacking binutils-common:armhf (2.39.90.20221231-1+rpi1) over (2.39.50.20221208-5+rpi1) ...
Preparing to unpack .../10-binutils_2.39.90.20221231-1+rpi1_armhf.deb ...
Unpacking binutils (2.39.90.20221231-1+rpi1) over (2.39.50.20221208-5+rpi1) ...
Preparing to unpack .../11-g++-12_12.2.0-14+rpi1_armhf.deb ...
Unpacking g++-12 (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Preparing to unpack .../12-gcc-12_12.2.0-14+rpi1_armhf.deb ...
Unpacking gcc-12 (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Preparing to unpack .../13-libgcc-12-dev_12.2.0-14+rpi1_armhf.deb ...
Unpacking libgcc-12-dev:armhf (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Preparing to unpack .../14-libstdc++-12-dev_12.2.0-14+rpi1_armhf.deb ...
Unpacking libstdc++-12-dev:armhf (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Preparing to unpack .../15-libgcc-s1_12.2.0-14+rpi1_armhf.deb ...
Unpacking libgcc-s1:armhf (12.2.0-14+rpi1) over (12.2.0-10+rpi1) ...
Setting up libgcc-s1:armhf (12.2.0-14+rpi1) ...
(Reading database ... 12959 files and directories currently installed.)
Preparing to unpack .../libssl3_3.0.7-2_armhf.deb ...
Unpacking libssl3:armhf (3.0.7-2) over (3.0.7-1) ...
Selecting previously unselected package libpython3.11-minimal:armhf.
Preparing to unpack .../libpython3.11-minimal_3.11.1-2_armhf.deb ...
Unpacking libpython3.11-minimal:armhf (3.11.1-2) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ...
Unpacking libexpat1:armhf (2.5.0-1) ...
Selecting previously unselected package python3.11-minimal.
Preparing to unpack .../python3.11-minimal_3.11.1-2_armhf.deb ...
Unpacking python3.11-minimal (3.11.1-2) ...
Setting up libatomic1:armhf (12.2.0-14+rpi1) ...
Setting up libssl3:armhf (3.0.7-2) ...
Setting up libpython3.11-minimal:armhf (3.11.1-2) ...
Setting up libexpat1:armhf (2.5.0-1) ...
Setting up python3.11-minimal (3.11.1-2) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13275 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.11.1-2_armhf.deb ...
Unpacking python3-minimal (3.11.1-2) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_8.0.0_all.deb ...
Unpacking media-types (8.0.0) ...
Selecting previously unselected package mailcap.
Preparing to unpack .../2-mailcap_3.70+nmu1_all.deb ...
Unpacking mailcap (3.70+nmu1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../3-mime-support_3.66_all.deb ...
Unpacking mime-support (3.66) ...
Selecting previously unselected package libmpdec3:armhf.
Preparing to unpack .../4-libmpdec3_2.5.1-2+rpi1_armhf.deb ...
Unpacking libmpdec3:armhf (2.5.1-2+rpi1) ...
Selecting previously unselected package libpython3.11-stdlib:armhf.
Preparing to unpack .../5-libpython3.11-stdlib_3.11.1-2_armhf.deb ...
Unpacking libpython3.11-stdlib:armhf (3.11.1-2) ...
Selecting previously unselected package python3.11.
Preparing to unpack .../6-python3.11_3.11.1-2_armhf.deb ...
Unpacking python3.11 (3.11.1-2) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../7-libpython3-stdlib_3.11.1-2_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.11.1-2) ...
Setting up python3-minimal (3.11.1-2) ...
Selecting previously unselected package python3.
(Reading database ... 13712 files and directories currently installed.)
Preparing to unpack .../000-python3_3.11.1-2_armhf.deb ...
Unpacking python3 (3.11.1-2) ...
Selecting previously unselected package libpython3.10-minimal:armhf.
Preparing to unpack .../001-libpython3.10-minimal_3.10.9-1_armhf.deb ...
Unpacking libpython3.10-minimal:armhf (3.10.9-1) ...
Selecting previously unselected package python3.10-minimal.
Preparing to unpack .../002-python3.10-minimal_3.10.9-1_armhf.deb ...
Unpacking python3.10-minimal (3.10.9-1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../003-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../004-groff-base_1.22.4-9_armhf.deb ...
Unpacking groff-base (1.22.4-9) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../005-bsdextrautils_2.38.1-4_armhf.deb ...
Unpacking bsdextrautils (2.38.1-4) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../006-libpipeline1_1.5.7-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../007-man-db_2.11.2-1_armhf.deb ...
Unpacking man-db (2.11.2-1) ...
Selecting previously unselected package openssl.
Preparing to unpack .../008-openssl_3.0.7-2_armhf.deb ...
Unpacking openssl (3.0.7-2) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../009-ca-certificates_20211016_all.deb ...
Unpacking ca-certificates (20211016) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../010-libmagic-mgc_1%3a5.44-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.44-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../011-libmagic1_1%3a5.44-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.44-2) ...
Selecting previously unselected package file.
Preparing to unpack .../012-file_1%3a5.44-2_armhf.deb ...
Unpacking file (1:5.44-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../013-gettext-base_0.21-10_armhf.deb ...
Unpacking gettext-base (0.21-10) ...
Selecting previously unselected package m4.
Preparing to unpack .../014-m4_1.4.19-2_armhf.deb ...
Unpacking m4 (1.4.19-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../015-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../018-autopoint_0.21-10_all.deb ...
Unpacking autopoint (0.21-10) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../019-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../020-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../021-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../023-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../025-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../026-libelf1_0.187-2+rpi2_armhf.deb ...
Unpacking libelf1:armhf (0.187-2+rpi2) ...
Selecting previously unselected package dwz.
Preparing to unpack .../027-dwz_0.15-1_armhf.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../028-libicu72_72.1-3_armhf.deb ...
Unpacking libicu72:armhf (72.1-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../029-libxml2_2.9.14+dfsg-1.1+b1_armhf.deb ...
Unpacking libxml2:armhf (2.9.14+dfsg-1.1+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../030-gettext_0.21-10_armhf.deb ...
Unpacking gettext (0.21-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../031-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../032-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../033-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../034-python3-lib2to3_3.10.8-1_all.deb ...
Unpacking python3-lib2to3 (3.10.8-1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../035-python3-distutils_3.10.8-1_all.deb ...
Unpacking python3-distutils (3.10.8-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../036-dh-python_5.20220819+rpi1_all.deb ...
Unpacking dh-python (5.20220819+rpi1) ...
Selecting previously unselected package xml-core.
Preparing to unpack .../037-xml-core_0.18+nmu1_all.deb ...
Unpacking xml-core (0.18+nmu1) ...
Selecting previously unselected package docutils-common.
Preparing to unpack .../038-docutils-common_0.19+dfsg-6_all.deb ...
Unpacking docutils-common (0.19+dfsg-6) ...
Selecting previously unselected package libfontenc1:armhf.
Preparing to unpack .../039-libfontenc1_1%3a1.1.4-1_armhf.deb ...
Unpacking libfontenc1:armhf (1:1.1.4-1) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../040-libbrotli1_1.0.9-2+b3_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b3) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../041-libpng16-16_1.6.39-2_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.39-2) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../042-libfreetype6_2.12.1+dfsg-4_armhf.deb ...
Unpacking libfreetype6:armhf (2.12.1+dfsg-4) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../043-x11-common_1%3a7.7+23_all.deb ...
Unpacking x11-common (1:7.7+23) ...
Selecting previously unselected package xfonts-encodings.
Preparing to unpack .../044-xfonts-encodings_1%3a1.0.4-2.2_all.deb ...
Unpacking xfonts-encodings (1:1.0.4-2.2) ...
Selecting previously unselected package xfonts-utils.
Preparing to unpack .../045-xfonts-utils_1%3a7.7+6_armhf.deb ...
Unpacking xfonts-utils (1:7.7+6) ...
Selecting previously unselected package fonts-urw-base35.
Preparing to unpack .../046-fonts-urw-base35_20200910-7_all.deb ...
Unpacking fonts-urw-base35 (20200910-7) ...
Selecting previously unselected package libaec0:armhf.
Preparing to unpack .../047-libaec0_1.0.6-1_armhf.deb ...
Unpacking libaec0:armhf (1.0.6-1) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../048-libblas3_3.11.0-2_armhf.deb ...
Unpacking libblas3:armhf (3.11.0-2) ...
Selecting previously unselected package libmd0:armhf.
Preparing to unpack .../049-libmd0_1.0.4-2_armhf.deb ...
Unpacking libmd0:armhf (1.0.4-2) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../050-libbsd0_0.11.7-1_armhf.deb ...
Unpacking libbsd0:armhf (0.11.7-1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../051-libnghttp2-14_1.51.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.51.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../052-libpsl5_0.21.0-1.2_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1.2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../053-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../054-libssh2-1_1.10.0-3+b1_armhf.deb ...
Unpacking libssh2-1:armhf (1.10.0-3+b1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../055-libcurl3-gnutls_7.87.0-2_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.87.0-2) ...
Selecting previously unselected package libcurl4:armhf.
Preparing to unpack .../056-libcurl4_7.87.0-2_armhf.deb ...
Unpacking libcurl4:armhf (7.87.0-2) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../057-libdeflate0_1.14-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.14-1) ...
Selecting previously unselected package libfribidi0:armhf.
Preparing to unpack .../058-libfribidi0_1.0.8-2.1_armhf.deb ...
Unpacking libfribidi0:armhf (1.0.8-2.1) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../059-libgfortran5_12.2.0-14+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (12.2.0-14+rpi1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../060-libglib2.0-0_2.74.5-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.74.5-1) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../061-libgraphite2-3_1.3.14-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.14-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../062-libharfbuzz0b_6.0.0-1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (6.0.0-1) ...
Selecting previously unselected package libsz2:armhf.
Preparing to unpack .../063-libsz2_1.0.6-1_armhf.deb ...
Unpacking libsz2:armhf (1.0.6-1) ...
Selecting previously unselected package libhdf5-103-1:armhf.
Preparing to unpack .../064-libhdf5-103-1_1.10.8+repack1-1_armhf.deb ...
Unpacking libhdf5-103-1:armhf (1.10.8+repack1-1) ...
Selecting previously unselected package libhdf5-hl-100:armhf.
Preparing to unpack .../065-libhdf5-hl-100_1.10.8+repack1-1_armhf.deb ...
Unpacking libhdf5-hl-100:armhf (1.10.8+repack1-1) ...
Selecting previously unselected package libhtscodecs2:armhf.
Preparing to unpack .../066-libhtscodecs2_1.3.0-4_armhf.deb ...
Unpacking libhtscodecs2:armhf (1.3.0-4) ...
Selecting previously unselected package libhts3:armhf.
Preparing to unpack .../067-libhts3_1.16+ds-3_armhf.deb ...
Unpacking libhts3:armhf (1.16+ds-3) ...
Selecting previously unselected package libimagequant0:armhf.
Preparing to unpack .../068-libimagequant0_2.17.0-1_armhf.deb ...
Unpacking libimagequant0:armhf (2.17.0-1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../069-libjbig0_2.1-6.1_armhf.deb ...
Unpacking libjbig0:armhf (2.1-6.1) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../070-libjpeg62-turbo_1%3a2.1.2-1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:2.1.2-1) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../071-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../072-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../073-libjs-sphinxdoc_5.3.0-3_all.deb ...
Unpacking libjs-sphinxdoc (5.3.0-3) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../074-liblapack3_3.11.0-2_armhf.deb ...
Unpacking liblapack3:armhf (3.11.0-2) ...
Selecting previously unselected package liblbfgsb0:armhf.
Preparing to unpack .../075-liblbfgsb0_3.0+dfsg.3-11_armhf.deb ...
Unpacking liblbfgsb0:armhf (3.0+dfsg.3-11) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../076-liblcms2-2_2.14-1+b1_armhf.deb ...
Unpacking liblcms2-2:armhf (2.14-1+b1) ...
Selecting previously unselected package liblerc4:armhf.
Preparing to unpack .../077-liblerc4_4.0.0+ds-2_armhf.deb ...
Unpacking liblerc4:armhf (4.0.0+ds-2) ...
Selecting previously unselected package liblzf1:armhf.
Preparing to unpack .../078-liblzf1_3.6-3_armhf.deb ...
Unpacking liblzf1:armhf (3.6-3) ...
Selecting previously unselected package libopenjp2-7:armhf.
Preparing to unpack .../079-libopenjp2-7_2.5.0-1+b1_armhf.deb ...
Unpacking libopenjp2-7:armhf (2.5.0-1+b1) ...
Selecting previously unselected package libpython3.10-stdlib:armhf.
Preparing to unpack .../080-libpython3.10-stdlib_3.10.9-1_armhf.deb ...
Unpacking libpython3.10-stdlib:armhf (3.10.9-1) ...
Selecting previously unselected package libraqm0:armhf.
Preparing to unpack .../081-libraqm0_0.7.0-4_armhf.deb ...
Unpacking libraqm0:armhf (0.7.0-4) ...
Selecting previously unselected package libwebp7:armhf.
Preparing to unpack .../082-libwebp7_1.2.4-0.1_armhf.deb ...
Unpacking libwebp7:armhf (1.2.4-0.1) ...
Selecting previously unselected package libtiff6:armhf.
Preparing to unpack .../083-libtiff6_4.5.0-4_armhf.deb ...
Unpacking libtiff6:armhf (4.5.0-4) ...
Selecting previously unselected package libwebpdemux2:armhf.
Preparing to unpack .../084-libwebpdemux2_1.2.4-0.1_armhf.deb ...
Unpacking libwebpdemux2:armhf (1.2.4-0.1) ...
Selecting previously unselected package libwebpmux3:armhf.
Preparing to unpack .../085-libwebpmux3_1.2.4-0.1_armhf.deb ...
Unpacking libwebpmux3:armhf (1.2.4-0.1) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../086-libxau6_1%3a1.0.9-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.9-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../087-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../088-libxcb1_1.15-1_armhf.deb ...
Unpacking libxcb1:armhf (1.15-1) ...
Selecting previously unselected package python3-attr.
Preparing to unpack .../089-python3-attr_22.2.0-1_all.deb ...
Unpacking python3-attr (22.2.0-1) ...
Selecting previously unselected package python3-avro.
Preparing to unpack .../090-python3-avro_1.11.1+dfsg-2_all.deb ...
Unpacking python3-avro (1.11.1+dfsg-2) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../091-python3-pkg-resources_65.6.3-1_all.deb ...
Unpacking python3-pkg-resources (65.6.3-1) ...
Selecting previously unselected package python3.10.
Preparing to unpack .../092-python3.10_3.10.9-1_armhf.deb ...
Unpacking python3.10 (3.10.9-1) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../093-python3-numpy_1%3a1.24.1-2_armhf.deb ...
Unpacking python3-numpy (1:1.24.1-2) ...
Selecting previously unselected package python3-renderpm:armhf.
Preparing to unpack .../094-python3-renderpm_3.6.12-1_armhf.deb ...
Unpacking python3-renderpm:armhf (3.6.12-1) ...
Selecting previously unselected package python3-reportlab-accel:armhf.
Preparing to unpack .../095-python3-reportlab-accel_3.6.12-1_armhf.deb ...
Unpacking python3-reportlab-accel:armhf (3.6.12-1) ...
Selecting previously unselected package python3-pil:armhf.
Preparing to unpack .../096-python3-pil_9.4.0-1.1_armhf.deb ...
Unpacking python3-pil:armhf (9.4.0-1.1) ...
Selecting previously unselected package python3-reportlab.
Preparing to unpack .../097-python3-reportlab_3.6.12-1_all.deb ...
Unpacking python3-reportlab (3.6.12-1) ...
Selecting previously unselected package w3c-sgml-lib.
Preparing to unpack .../098-w3c-sgml-lib_1.3-3_all.deb ...
Unpacking w3c-sgml-lib (1.3-3) ...
Selecting previously unselected package python3-biopython.
Preparing to unpack .../099-python3-biopython_1.80+dfsg-4_armhf.deb ...
Unpacking python3-biopython (1.80+dfsg-4) ...
Selecting previously unselected package python3-certifi.
Preparing to unpack .../100-python3-certifi_2022.9.24-1_all.deb ...
Unpacking python3-certifi (2022.9.24-1) ...
Selecting previously unselected package python3-chardet.
Preparing to unpack .../101-python3-chardet_5.1.0+dfsg-2_all.deb ...
Unpacking python3-chardet (5.1.0+dfsg-2) ...
Selecting previously unselected package python3-charset-normalizer.
Preparing to unpack .../102-python3-charset-normalizer_3.0.1-2_all.deb ...
Unpacking python3-charset-normalizer (3.0.1-2) ...
Selecting previously unselected package python3-decorator.
Preparing to unpack .../103-python3-decorator_5.1.1-3_all.deb ...
Unpacking python3-decorator (5.1.1-3) ...
Selecting previously unselected package python3-roman.
Preparing to unpack .../104-python3-roman_3.3-3_all.deb ...
Unpacking python3-roman (3.3-3) ...
Selecting previously unselected package python3-docutils.
Preparing to unpack .../105-python3-docutils_0.19+dfsg-6_all.deb ...
Unpacking python3-docutils (0.19+dfsg-6) ...
Selecting previously unselected package python3-exceptiongroup.
Preparing to unpack .../106-python3-exceptiongroup_1.1.0-1_all.deb ...
Unpacking python3-exceptiongroup (1.1.0-1) ...
Selecting previously unselected package python3-execnet.
Preparing to unpack .../107-python3-execnet_1.9.0-1_all.deb ...
Unpacking python3-execnet (1.9.0-1) ...
Selecting previously unselected package python3-h5py-serial.
Preparing to unpack .../108-python3-h5py-serial_3.7.0-3+b1_armhf.deb ...
Unpacking python3-h5py-serial (3.7.0-3+b1) ...
Selecting previously unselected package python3-h5py.
Preparing to unpack .../109-python3-h5py_3.7.0-3_all.deb ...
Unpacking python3-h5py (3.7.0-3) ...
Selecting previously unselected package python3-idna.
Preparing to unpack .../110-python3-idna_3.3-1_all.deb ...
Unpacking python3-idna (3.3-1) ...
Selecting previously unselected package python3-iniconfig.
Preparing to unpack .../111-python3-iniconfig_1.1.1-2_all.deb ...
Unpacking python3-iniconfig (1.1.1-2) ...
Selecting previously unselected package python3-iso8601.
Preparing to unpack .../112-python3-iso8601_1.0.2-1_all.deb ...
Unpacking python3-iso8601 (1.0.2-1) ...
Selecting previously unselected package python3-more-itertools.
Preparing to unpack .../113-python3-more-itertools_8.10.0-2_all.deb ...
Unpacking python3-more-itertools (8.10.0-2) ...
Selecting previously unselected package python3-packaging.
Preparing to unpack .../114-python3-packaging_23.0-1_all.deb ...
Unpacking python3-packaging (23.0-1) ...
Selecting previously unselected package python3-six.
Preparing to unpack .../115-python3-six_1.16.0-4_all.deb ...
Unpacking python3-six (1.16.0-4) ...
Selecting previously unselected package python3-urllib3.
Preparing to unpack .../116-python3-urllib3_1.26.12-1_all.deb ...
Unpacking python3-urllib3 (1.26.12-1) ...
Selecting previously unselected package python3-requests.
Preparing to unpack .../117-python3-requests_2.28.1+dfsg-1_all.deb ...
Unpacking python3-requests (2.28.1+dfsg-1) ...
Selecting previously unselected package python3-tz.
Preparing to unpack .../118-python3-tz_2022.7.1-1_all.deb ...
Unpacking python3-tz (2022.7.1-1) ...
Selecting previously unselected package python3-pbcommand.
Preparing to unpack .../119-python3-pbcommand_2.1.1+git20220616.3f2e6c2-2_all.deb ...
Unpacking python3-pbcommand (2.1.1+git20220616.3f2e6c2-2) ...
Selecting previously unselected package python3-pysam.
Preparing to unpack .../120-python3-pysam_0.20.0+ds-3+rpi1_armhf.deb ...
Unpacking python3-pysam (0.20.0+ds-3+rpi1) ...
Selecting previously unselected package python3-pbcore.
Preparing to unpack .../121-python3-pbcore_2.1.2+dfsg-5_all.deb ...
Unpacking python3-pbcore (2.1.2+dfsg-5) ...
Selecting previously unselected package python3-pluggy.
Preparing to unpack .../122-python3-pluggy_1.0.0+repack-1_all.deb ...
Unpacking python3-pluggy (1.0.0+repack-1) ...
Selecting previously unselected package python3-py.
Preparing to unpack .../123-python3-py_1.11.0-1_all.deb ...
Unpacking python3-py (1.11.0-1) ...
Selecting previously unselected package python3-tomli.
Preparing to unpack .../124-python3-tomli_2.0.1-2_all.deb ...
Unpacking python3-tomli (2.0.1-2) ...
Selecting previously unselected package python3-pytest.
Preparing to unpack .../125-python3-pytest_7.2.1-1_all.deb ...
Unpacking python3-pytest (7.2.1-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../126-python3-setuptools_65.6.3-1_all.deb ...
Unpacking python3-setuptools (65.6.3-1) ...
Selecting previously unselected package python3-pytest-runner.
Preparing to unpack .../127-python3-pytest-runner_2.11.1-4_all.deb ...
Unpacking python3-pytest-runner (2.11.1-4) ...
Selecting previously unselected package python3-pytest-xdist.
Preparing to unpack .../128-python3-pytest-xdist_3.1.0-1_all.deb ...
Unpacking python3-pytest-xdist (3.1.0-1) ...
Selecting previously unselected package python3-scipy.
Preparing to unpack .../129-python3-scipy_1.8.1-21+rpi1_armhf.deb ...
Unpacking python3-scipy (1.8.1-21+rpi1) ...
Selecting previously unselected package python3-uritools.
Preparing to unpack .../130-python3-uritools_4.0.0-1_all.deb ...
Unpacking python3-uritools (4.0.0-1) ...
Selecting previously unselected package sbuild-build-depends-kineticstools-dummy.
Preparing to unpack .../131-sbuild-build-depends-kineticstools-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-kineticstools-dummy (0.invalid.0) ...
Setting up libhtscodecs2:armhf (1.3.0-4) ...
Setting up media-types (8.0.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up liblcms2-2:armhf (2.14-1+b1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up cpp-12 (12.2.0-14+rpi1) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up liblerc4:armhf (4.0.0+ds-2) ...
Setting up bsdextrautils (2.38.1-4) ...
Setting up libmagic-mgc (1:5.44-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.74.5-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.11.4) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
Setting up binutils-common:armhf (2.39.90.20221231-1+rpi1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libnghttp2-14:armhf (1.51.0-1) ...
Setting up libmagic1:armhf (1:5.44-2) ...
Setting up libdeflate0:armhf (1.14-1) ...
Setting up libctf-nobfd0:armhf (2.39.90.20221231-1+rpi1) ...
Setting up gettext-base (0.21-10) ...
Setting up m4 (1.4.19-2) ...
Setting up file (1:5.44-2) ...
Setting up libgomp1:armhf (12.2.0-14+rpi1) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libaec0:armhf (1.0.6-1) ...
Setting up libfontenc1:armhf (1:1.1.4-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up liblzf1:armhf (3.6-3) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:armhf (1.0.8-2.1) ...
Setting up libimagequant0:armhf (2.17.0-1) ...
Setting up libpng16-16:armhf (1.6.39-2) ...
Setting up libpython3.10-minimal:armhf (3.10.9-1) ...
Setting up autopoint (0.21-10) ...
Setting up libgfortran5:armhf (12.2.0-14+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libwebp7:armhf (1.2.4-0.1) ...
Setting up libubsan1:armhf (12.2.0-14+rpi1) ...
Setting up libmd0:armhf (1.0.4-2) ...
Setting up libtiff6:armhf (4.5.0-4) ...
Setting up xml-core (0.18+nmu1) ...
Setting up libasan8:armhf (12.2.0-14+rpi1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libopenjp2-7:armhf (2.5.0-1+b1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libbinutils:armhf (2.39.90.20221231-1+rpi1) ...
Setting up openssl (3.0.7-2) ...
Setting up libwebpmux3:armhf (1.2.4-0.1) ...
Setting up libbsd0:armhf (0.11.7-1) ...
Setting up mailcap (3.70+nmu1) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.1+b1) ...
Setting up libcc1-0:armhf (12.2.0-14+rpi1) ...
Setting up libsz2:armhf (1.0.6-1) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up libctf0:armhf (2.39.90.20221231-1+rpi1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-10) ...
Setting up mime-support (3.66) ...
Setting up libtool (2.4.7-5) ...
Setting up libwebpdemux2:armhf (1.2.4-0.1) ...
Setting up libpython3.11-stdlib:armhf (3.11.1-2) ...
Setting up libcurl3-gnutls:armhf (7.87.0-2) ...
Setting up python3.10-minimal (3.10.9-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libpython3.10-stdlib:armhf (3.10.9-1) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up libfreetype6:armhf (2.12.1+dfsg-4) ...
Setting up libgcc-12-dev:armhf (12.2.0-14+rpi1) ...
Setting up libjs-sphinxdoc (5.3.0-3) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-9) ...
Setting up libcurl4:armhf (7.87.0-2) ...
Setting up libharfbuzz0b:armhf (6.0.0-1) ...
Setting up binutils-arm-linux-gnueabihf (2.39.90.20221231-1+rpi1) ...
Setting up libpython3-stdlib:armhf (3.11.1-2) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-11) ...
Setting up python3.11 (3.11.1-2) ...
Setting up libhts3:armhf (1.16+ds-3) ...
Setting up python3.10 (3.10.9-1) ...
Setting up libstdc++-12-dev:armhf (12.2.0-14+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3 (3.11.1-2) ...
Setting up binutils (2.39.90.20221231-1+rpi1) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.11.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-tz (2022.7.1-1) ...
Setting up python3-six (1.16.0-4) ...
Setting up python3-roman (3.3-3) ...
Setting up python3-decorator (5.1.1-3) ...
Setting up python3-packaging (23.0-1) ...
Setting up python3-iso8601 (1.0.2-1) ...
Setting up python3-certifi (2022.9.24-1) ...
Setting up gcc-12 (12.2.0-14+rpi1) ...
Setting up python3-avro (1.11.1+dfsg-2) ...
Setting up libraqm0:armhf (0.7.0-4) ...
Setting up python3-reportlab-accel:armhf (3.6.12-1) ...
Setting up python3-idna (3.3-1) ...
Setting up python3-urllib3 (1.26.12-1) ...
Setting up python3-pluggy (1.0.0+repack-1) ...
Setting up libhdf5-103-1:armhf (1.10.8+repack1-1) ...
Setting up python3-exceptiongroup (1.1.0-1) ...
Setting up python3-execnet (1.9.0-1) ...
Setting up python3-lib2to3 (3.10.8-1) ...
Setting up libhdf5-hl-100:armhf (1.10.8+repack1-1) ...
Setting up g++-12 (12.2.0-14+rpi1) ...
Setting up python3-uritools (4.0.0-1) ...
Setting up python3-pkg-resources (65.6.3-1) ...
Setting up python3-distutils (3.10.8-1) ...
Setting up dh-python (5.20220819+rpi1) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-attr (22.2.0-1) ...
Setting up python3-pysam (0.20.0+ds-3+rpi1) ...
Setting up python3-setuptools (65.6.3-1) ...
Setting up python3-tomli (2.0.1-2) ...
Setting up python3-py (1.11.0-1) ...
Setting up python3-charset-normalizer (3.0.1-2) ...
Setting up python3-pytest (7.2.1-1) ...
Setting up debhelper (13.11.4) ...
Setting up fonts-urw-base35 (20200910-7) ...
Setting up python3-pil:armhf (9.4.0-1.1) ...
Setting up python3-chardet (5.1.0+dfsg-2) ...
Setting up python3-requests (2.28.1+dfsg-1) ...
Setting up python3-numpy (1:1.24.1-2) ...
Setting up python3-reportlab (3.6.12-1) ...
Setting up python3-pytest-runner (2.11.1-4) ...
Setting up python3-scipy (1.8.1-21+rpi1) ...
Setting up python3-renderpm:armhf (3.6.12-1) ...
Setting up python3-pytest-xdist (3.1.0-1) ...
Setting up python3-h5py-serial (3.7.0-3+b1) ...
Setting up python3-h5py (3.7.0-3) ...
Setting up python3-pbcommand (2.1.1+git20220616.3f2e6c2-2) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Processing triggers for libc-bin (2.36-6+rpi1) ...
Setting up docutils-common (0.19+dfsg-6) ...
Setting up python3-biopython (1.80+dfsg-4) ...
Setting up python3-pbcore (2.1.2+dfsg-5) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.19+dfsg-6) ...
Setting up sbuild-build-depends-kineticstools-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39.90.20221231-1+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-6+rpi1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2-2 binutils_2.39.90.20221231-1+rpi1 binutils-arm-linux-gnueabihf_2.39.90.20221231-1+rpi1 binutils-common_2.39.90.20221231-1+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-1 dirmngr_2.2.40-1 docutils-common_0.19+dfsg-6 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.44-2 findutils_4.9.0-3 fonts-urw-base35_20200910-7 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-2 libaec0_1.0.6-1 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39.90.20221231-1+rpi1 libblas3_3.11.0-2 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-6+rpi1 libc-dev-bin_2.36-6+rpi1 libc6_2.36-6+rpi1 libc6-dev_2.36-6+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-14+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39.90.20221231-1+rpi1 libctf0_2.39.90.20221231-1+rpi1 libcurl3-gnutls_7.87.0-2 libcurl4_7.87.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.4 libdeflate0_1.14-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfontenc1_1:1.1.4-1 libfreetype6_2.12.1+dfsg-4 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14+rpi1 libglib2.0-0_2.74.5-1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-1 libharfbuzz0b_6.0.0-1 libhdf5-103-1_1.10.8+repack1-1 libhdf5-hl-100_1.10.8+repack1-1 libhogweed6_3.8.1-2 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu72_72.1-3 libidn2-0_2.3.3-1 libimagequant0_2.17.0-1 libisl23_0.25-1 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg62-turbo_1:2.1.2-1 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_5.3.0-3 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.2-4 liblapack3_3.11.0-2 liblbfgsb0_3.0+dfsg.3-11 liblcms2-2_2.14-1+b1 libldap-2.5-0_2.5.13+dfsg-2+rpi1+b1 liblerc4_4.0.0+ds-2 liblz4-1_1.9.4-1+rpi1 liblzf1_3.6-3 liblzma5_5.4.0-0.1 libmagic-mgc_1:5.44-2 libmagic1_1:5.44-2 libmd0_1.0.4-2 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.51.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.5.0-1+b1 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-3 libpcre3_2:8.39-14 libperl5.36_5.36.0-6 libpipeline1_1.5.7-1 libpng16-16_1.6.39-2 libpsl5_0.21.0-1.2 libpython3-stdlib_3.11.1-2 libpython3.10-minimal_3.10.9-1 libpython3.10-stdlib_3.10.9-1 libpython3.11-minimal_3.11.1-2 libpython3.11-stdlib_3.11.1-2 libraqm0_0.7.0-4 libreadline8_8.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.7-2 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.2-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.19.0-2 libtiff6_4.5.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.2-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-4 libwebp7_1.2.4-0.1 libwebpdemux2_1.2.4-0.1 libwebpmux3_1.2.4-0.1 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxml2_2.9.14+dfsg-1.1+b1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.12-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-2 mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mime-support_3.66 mount_2.38.1-4 nano_7.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.4 openssl_3.0.7-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python3_3.11.1-2 python3-attr_22.2.0-1 python3-avro_1.11.1+dfsg-2 python3-biopython_1.80+dfsg-4 python3-certifi_2022.9.24-1 python3-chardet_5.1.0+dfsg-2 python3-charset-normalizer_3.0.1-2 python3-decorator_5.1.1-3 python3-distutils_3.10.8-1 python3-docutils_0.19+dfsg-6 python3-exceptiongroup_1.1.0-1 python3-execnet_1.9.0-1 python3-h5py_3.7.0-3 python3-h5py-serial_3.7.0-3+b1 python3-idna_3.3-1 python3-iniconfig_1.1.1-2 python3-iso8601_1.0.2-1 python3-lib2to3_3.10.8-1 python3-minimal_3.11.1-2 python3-more-itertools_8.10.0-2 python3-numpy_1:1.24.1-2 python3-packaging_23.0-1 python3-pbcommand_2.1.1+git20220616.3f2e6c2-2 python3-pbcore_2.1.2+dfsg-5 python3-pil_9.4.0-1.1 python3-pkg-resources_65.6.3-1 python3-pluggy_1.0.0+repack-1 python3-py_1.11.0-1 python3-pysam_0.20.0+ds-3+rpi1 python3-pytest_7.2.1-1 python3-pytest-runner_2.11.1-4 python3-pytest-xdist_3.1.0-1 python3-renderpm_3.6.12-1 python3-reportlab_3.6.12-1 python3-reportlab-accel_3.6.12-1 python3-requests_2.28.1+dfsg-1 python3-roman_3.3-3 python3-scipy_1.8.1-21+rpi1 python3-setuptools_65.6.3-1 python3-six_1.16.0-4 python3-tomli_2.0.1-2 python3-tz_2022.7.1-1 python3-uritools_4.0.0-1 python3-urllib3_1.26.12-1 python3.10_3.10.9-1 python3.10-minimal_3.10.9-1 python3.11_3.11.1-2 python3.11-minimal_3.11.1-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kineticstools-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 tzdata_2022f-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+6 xml-core_0.18+nmu1 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.sWziFAWI/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 21 14:37:16 2022 UTC
gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.dsc
dpkg-source: info: extracting kineticstools in /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg
dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz
dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying man-pages.patch
dpkg-source: info: applying tests-import.patch
dpkg-source: info: applying verbose-testing.patch
dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying tests2to3.patch
dpkg-source: info: applying man-align-cols.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.6.1+git20220223.1326a4d+dfsg-2+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-4bfb8fd3-9ce2-49b9-8f92-e8061bf23aa1
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package kineticstools
dpkg-buildpackage: info: source version 0.6.1+git20220223.1326a4d+dfsg-2+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
dh_auto_clean
I: pybuild base:240: python3.11 setup.py clean
running clean
removing '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -rf .pytest_cache
rm -rf kineticsTools.egg-info
rm -f nosetests.xml
rm -f bin/ipdSummary
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/loader.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal
copying kineticsTools/internal/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/gather_bigwig.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks
running egg_info
creating kineticsTools.egg-info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kineticsTools.resources' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'kineticsTools.resources' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'kineticsTools.resources' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'kineticsTools.resources' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/P6-C4.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP2-C2.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP3-C3.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/unknown.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
running build_ext
building 'kineticsTools/tree_predict' extension
creating build
creating build/temp.linux-armhf-cpython-311
creating build/temp.linux-armhf-cpython-311/kineticsTools
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c kineticsTools/tree_predict.c -o build/temp.linux-armhf-cpython-311/kineticsTools/tree_predict.o -O3 -shared -std=c99
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/kineticsTools/tree_predict.o -L/usr/lib/arm-linux-gnueabihf -o /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tree_predict.cpython-311-arm-linux-gnueabihf.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
cp kineticsTools/ipdSummary.py bin/ipdSummary
chmod +x bin/ipdSummary
PYTHONPATH=/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg PATH=$PATH:/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/bin dh_auto_test
I: pybuild base:240: cd /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build; python3.11 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.11.1, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3.11
cachedir: .pytest_cache
rootdir: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg, configfile: pytest.ini
plugins: xdist-3.1.0
gw0 I / gw1 I / gw2 I / gw3 I
[gw0] linux Python 3.11.1 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build
[gw1] linux Python 3.11.1 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build
[gw2] linux Python 3.11.1 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build
[gw3] linux Python 3.11.1 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build
[gw0] Python 3.11.1 (main, Dec 31 2022, 10:23:59) [GCC 12.2.0]
[gw1] Python 3.11.1 (main, Dec 31 2022, 10:23:59) [GCC 12.2.0]
[gw2] Python 3.11.1 (main, Dec 31 2022, 10:23:59) [GCC 12.2.0]
[gw3] Python 3.11.1 (main, Dec 31 2022, 10:23:59) [GCC 12.2.0]
gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19]
scheduling tests via LoadScopeScheduling
test/test_ReferenceUtils.py::TestReferenceUtils::test_bam
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
test/test_integration.py::TestKineticsTools::test_help
test/test_ipdModel.py::TestIpdModel::test_refLength
[gw0] [ 5%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam
test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset
[gw1] [ 10%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
[gw0] [ 15%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset
[gw3] [ 21%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow
[gw0] [ 26%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow
test/test_ipdModel.py::TestIpdModel::test_snippetFunc
[gw1] [ 31%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
test/test_loader.py::test_basic
[gw3] [ 36%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc
test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows
[gw0] [ 42%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows
[gw1] [ 47%] PASSED test/test_loader.py::test_basic
test/test_loader.py::test_path
[gw1] [ 52%] PASSED test/test_loader.py::test_path
test/test_loader.py::test_path_with_prefixed_chem
[gw1] [ 57%] PASSED test/test_loader.py::test_path_with_prefixed_chem
test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow
[gw3] [ 63%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow
test/test_loader.py::test_getResourcePathSpec
test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
[gw1] [ 68%] PASSED test/test_loader.py::test_getResourcePathSpec
[gw0] [ 73%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
test/test_summarize_modifications.py::TestSummarizeModifications::test_integration
[gw3] [ 78%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration
[gw2] [ 84%] PASSED test/test_integration.py::TestKineticsTools::test_help
test/test_integration.py::TestKineticsTools::test_ecoli_first_50k
[gw2] [ 89%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k
test/test_outputs.py::TestOutputs::test_csv_output
[gw2] [ 94%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output
test/test_outputs.py::TestOutputs::test_bigwig
[gw2] [100%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig
- generated xml file: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/nosetests.xml -
============================= slowest 20 durations =============================
7.59s call .pybuild/cpython3_3.11_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.01s setup .pybuild/cpython3_3.11_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
0.01s setup .pybuild/cpython3_3.11_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.01s setup .pybuild/cpython3_3.11_kineticstools/build/test/test_ipdModel.py::TestIpdModel::test_snippetFunc
0.01s call .pybuild/cpython3_3.11_kineticstools/build/test/test_loader.py::test_basic
(15 durations < 0.005s hidden. Use -vv to show these durations.)
======================== 5 passed, 14 skipped in 15.97s ========================
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
dh_auto_install
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kineticsTools.resources' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'kineticsTools.resources' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'kineticsTools.resources' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'kineticsTools.resources' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
running build_ext
running install_lib
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/loader.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tree_predict.cpython-311-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/loader.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/nosetests.xml -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/loader.py to loader.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-311.pyc
running install_egg_info
Copying kineticsTools.egg-info to /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing ipdSummary script to /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin
Installing summarizeModifications script to /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin
mkdir -p /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin
mv debian/python3-kineticstools/usr/bin/* /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin
mkdir -p /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1
rst2man doc/manual.rst > /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1
doc/manual.rst:53: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
mkdir -p debian/kineticstools-data/usr/share/kineticstools
# There is probably a simpler way, but that should do for the moment.
set -e \
; for libdir in debian/python3-kineticstools/usr/lib/python3.* \
; do rm -rf /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \
; mv ${libdir}/dist-packages/kineticsTools/resources /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \
; done
rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.deb'.
dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-01-30T11:53:48Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.changes:
----------------------------------------------------------------
Format: 1.8
Date: Wed, 21 Dec 2022 19:59:38 +0530
Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-2)
Binary: python3-kineticstools python3-kineticstools-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.6.1+git20220223.1326a4d+dfsg-2+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
python3-kineticstools - detection of DNA modifications (Python 3 library)
Changes:
kineticstools (0.6.1+git20220223.1326a4d+dfsg-2+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
65260dc5290004687fa2ea57e1f87c4c97272efa 9548 kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.buildinfo
0adb2f0e5c8cf134f1a88f19aad1243d96347d16 5992 python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.deb
6f694e479879ceb3c58455ee93a5bac897dcb47f 46568 python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.deb
Checksums-Sha256:
1aafa3f5b79ad69f8353548ac3420d829627fef1c430f8f3b413886af835a854 9548 kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.buildinfo
1aa8b402bf77e1b2201543fffaf60fd10afc56efd96f8ca653b041327fb20be3 5992 python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.deb
faad4aa3b501b25e8957224a4629c1482c2046bfc37843e4229895ca11f2e2db 46568 python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.deb
Files:
7c7d01f6ec9cb44d971cdda11242528f 9548 science optional kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.buildinfo
74f86884168ceac8acadb7bc25d8eb16 5992 debug optional python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.deb
b3b6abe3b2f6ebdc5c8dad4646ab397c 46568 python optional python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.deb
--------------------------------------------------------------------------
new Debian package, version 2.0.
size 5992 bytes: control archive=568 bytes.
508 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-kineticstools-dbgsym
Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-2)
Version: 0.6.1+git20220223.1326a4d+dfsg-2+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 18
Depends: python3-kineticstools (= 0.6.1+git20220223.1326a4d+dfsg-2+b1)
Section: debug
Priority: optional
Description: debug symbols for python3-kineticstools
Build-Ids: eb33fae5356c00c3c8032cd56a1348ea30dee479
drwxr-xr-x root/root 0 2022-12-21 14:29 ./
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/debug/.build-id/eb/
-rw-r--r-- root/root 7468 2022-12-21 14:29 ./usr/lib/debug/.build-id/eb/33fae5356c00c3c8032cd56a1348ea30dee479.debug
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/share/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-12-21 14:29 ./usr/share/doc/python3-kineticstools-dbgsym -> python3-kineticstools
python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_armhf.deb
-------------------------------------------------------------------
new Debian package, version 2.0.
size 46568 bytes: control archive=2136 bytes.
1110 bytes, 20 lines control
3153 bytes, 32 lines md5sums
289 bytes, 12 lines * postinst #!/bin/sh
402 bytes, 12 lines * prerm #!/bin/sh
Package: python3-kineticstools
Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-2)
Version: 0.6.1+git20220223.1326a4d+dfsg-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 276
Depends: python3 (<< 3.12), python3 (>= 3.11~), python3-numpy, python3-pbcommand, python3-pbcore, python3-pybigwig, python3-scipy, python3:any, kineticstools-data (= 0.6.1+git20220223.1326a4d+dfsg-2)
Section: python
Priority: optional
Homepage: https://github.com/PacificBiosciences/kineticsTools
Description: detection of DNA modifications (Python 3 library)
Tools for detecting DNA modifications from single molecule, real-time (SMRT®)
sequencing data. This tool implements the P_ModificationDetection module in
SMRT® Portal, used by the RS_Modification_Detection and
RS_Modifications_and_Motif_Detection protocol. Researchers interested in
understanding or extending the modification detection algorithms can use these
tools as a starting point.
.
This package is part of the SMRTAnalysis suite and contains the backend
Python 3 library.
drwxr-xr-x root/root 0 2022-12-21 14:29 ./
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/
-rw-r--r-- root/root 228 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/dependency_links.txt
-rw-r--r-- root/root 128 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/entry_points.txt
-rw-r--r-- root/root 1 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/not-zip-safe
-rw-r--r-- root/root 39 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/requires.txt
-rw-r--r-- root/root 41 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/top_level.txt
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools/
-rw-r--r-- root/root 2762 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/BasicLdaEnricher.py
-rw-r--r-- root/root 34458 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/KineticWorker.py
-rw-r--r-- root/root 3700 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MedakaLdaEnricher.py
-rw-r--r-- root/root 11113 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MixtureEstimationMethods.py
-rw-r--r-- root/root 14350 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ModificationDecode.py
-rw-r--r-- root/root 5158 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MultiSiteCommon.py
-rw-r--r-- root/root 9748 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MultiSiteDetection.py
-rw-r--r-- root/root 5190 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/PositiveControlEnricher.py
-rw-r--r-- root/root 4365 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ReferenceUtils.py
-rw-r--r-- root/root 20650 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ResultWriter.py
-rw-r--r-- root/root 6096 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/WorkerProcess.py
-rw-r--r-- root/root 0 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/__init__.py
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools/internal/
-rw-r--r-- root/root 140 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/internal/__init__.py
-rw-r--r-- root/root 20039 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ipdModel.py
-rw-r--r-- root/root 23827 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ipdSummary.py
-rw-r--r-- root/root 2118 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/loader.py
-rw-r--r-- root/root 350 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/pipelineTools.py
lrwxrwxrwx root/root 0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools/resources -> ../../../../share/kineticstools/resources
-rw-r--r-- root/root 569 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/sharedArray.py
-rw-r--r-- root/root 5951 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/summarizeModifications.py
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools/tasks/
-rw-r--r-- root/root 0 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/tasks/__init__.py
-rw-r--r-- root/root 3854 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/tasks/gather_bigwig.py
-rw-r--r-- root/root 66712 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools/tree_predict.cpython-311-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/share/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-12-21 14:29 ./usr/share/doc/python3-kineticstools/
-rw-r--r-- root/root 242 2022-12-21 14:29 ./usr/share/doc/python3-kineticstools/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1617 2022-12-21 14:29 ./usr/share/doc/python3-kineticstools/changelog.Debian.gz
-rw-r--r-- root/root 234 2022-02-23 23:24 ./usr/share/doc/python3-kineticstools/changelog.gz
-rw-r--r-- root/root 2082 2022-12-21 14:24 ./usr/share/doc/python3-kineticstools/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 66040
Build-Time: 100
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1842
Job: kineticstools_0.6.1+git20220223.1326a4d+dfsg-2
Machine Architecture: armhf
Package: kineticstools
Package-Time: 2007
Source-Version: 0.6.1+git20220223.1326a4d+dfsg-2
Space: 66040
Status: successful
Version: 0.6.1+git20220223.1326a4d+dfsg-2+b1
--------------------------------------------------------------------------------
Finished at 2023-01-30T11:53:48Z
Build needed 00:33:27, 66040k disc space