Raspbian Package Auto-Building

Build log for jellyfish1 (1.1.11-6) on armhf

jellyfish1 → 1.1.11-6 → armhf → 2021-09-03 06:37:09 

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01

+==============================================================================+
| jellyfish1 1.1.11-6 (armhf)                  Fri, 03 Sep 2021 06:19:28 +0000 |
+==============================================================================+

Package: jellyfish1
Version: 1.1.11-6
Source Version: 1.1.11-6
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-a5c2f2ed-881f-49d2-8722-21a9a5bc0c20' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.7 MB in 26s (1005 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'jellyfish1' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/jellyfish1.git
Please use:
git clone https://salsa.debian.org/med-team/jellyfish1.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1075 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main jellyfish1 1.1.11-6 (dsc) [2019 B]
Get:2 http://172.17.0.1/private bookworm-staging/main jellyfish1 1.1.11-6 (tar) [1067 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main jellyfish1 1.1.11-6 (diff) [5536 B]
Fetched 1075 kB in 0s (4584 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/jellyfish1-AadjNC/jellyfish1-1.1.11' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/jellyfish1-AadjNC' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-QYMMHU/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-QYMMHU/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-QYMMHU/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2658 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-QYMMHU/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 58 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13)
Filtered Build-Depends: debhelper-compat (= 13)
dpkg-deb: building package 'sbuild-build-depends-jellyfish1-dummy' in '/<<BUILDDIR>>/resolver-QYMMHU/apt_archive/sbuild-build-depends-jellyfish1-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-jellyfish1-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Sources [493 B]
Get:5 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Packages [572 B]
Fetched 2398 B in 1s (3360 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-QYMMHU/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install jellyfish1 build dependencies (apt-based resolver)
----------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
  libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
  libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
  m4 man-db po-debconf sensible-utils
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
  libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
  libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
  m4 man-db po-debconf sbuild-build-depends-jellyfish1-dummy sensible-utils
0 upgraded, 32 newly installed, 0 to remove and 58 not upgraded.
Need to get 17.5 MB of archives.
After this operation, 64.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-QYMMHU/apt_archive ./ sbuild-build-depends-jellyfish1-dummy 0.invalid.0 [864 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.1 [192 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.1 [1056 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 17.5 MB in 1s (12.2 MB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../00-bsdextrautils_2.37.2-1_armhf.deb ...
Unpacking bsdextrautils (2.37.2-1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.4-6_armhf.deb ...
Unpacking groff-base (1.22.4-6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.9.4-2_armhf.deb ...
Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../05-sensible-utils_0.0.17_all.deb ...
Unpacking sensible-utils (0.0.17) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.39-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../07-libmagic1_1%3a5.39-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.39-3) ...
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Preparing to unpack .../08-file_1%3a5.39-3_armhf.deb ...
Unpacking file (1:5.39-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../09-gettext-base_0.21-4_armhf.deb ...
Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../10-libsigsegv2_2.13-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../11-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
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Preparing to unpack .../12-autoconf_2.69-14_all.deb ...
Unpacking autoconf (2.69-14) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
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Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ...
Unpacking automake (1:1.16.3-2) ...
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Preparing to unpack .../15-autopoint_0.21-4_all.deb ...
Unpacking autopoint (0.21-4) ...
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Unpacking libdebhelper-perl (13.5.1) ...
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Preparing to unpack .../17-libtool_2.4.6-15_all.deb ...
Unpacking libtool (2.4.6-15) ...
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Preparing to unpack .../18-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ...
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Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.12.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../23-libelf1_0.185-2_armhf.deb ...
Unpacking libelf1:armhf (0.185-2) ...
Selecting previously unselected package dwz.
Preparing to unpack .../24-dwz_0.14-1_armhf.deb ...
Unpacking dwz (0.14-1) ...
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Preparing to unpack .../25-libicu67_67.1-7_armhf.deb ...
Unpacking libicu67:armhf (67.1-7) ...
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Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ...
Selecting previously unselected package gettext.
Preparing to unpack .../27-gettext_0.21-4_armhf.deb ...
Unpacking gettext (0.21-4) ...
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Unpacking debhelper (13.5.1) ...
Selecting previously unselected package sbuild-build-depends-jellyfish1-dummy.
Preparing to unpack .../31-sbuild-build-depends-jellyfish1-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-jellyfish1-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up bsdextrautils (2.37.2-1) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.7) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up debhelper (13.5.1) ...
Setting up sbuild-build-depends-jellyfish1-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-13+rpi1) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.5.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblkid1_2.36.1-8 libbz2-1.0_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libext2fs2_1.46.2-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.0-5 libisl23_0.23-1 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-6+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-6+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-8 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.2-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-8 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4+deb11u1 perl-base_5.32.1-4+deb11u1 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-jellyfish1-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.17 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.36.1-8 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.rCW9dRdm/trustedkeys.kbx': General error
gpgv: Signature made Sat Aug 28 22:15:06 2021 UTC
gpgv:                using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv:                issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./jellyfish1_1.1.11-6.dsc
dpkg-source: info: extracting jellyfish1 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking jellyfish1_1.1.11.orig.tar.gz
dpkg-source: info: unpacking jellyfish1_1.1.11-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying man
dpkg-source: info: applying arm64.patch
dpkg-source: info: applying mips.patch
dpkg-source: info: applying autoconf.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-a5c2f2ed-881f-49d2-8722-21a9a5bc0c20
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package jellyfish1
dpkg-buildpackage: info: source version 1.1.11-6
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
if [ -d debian/tmp_save_tests ] ; then \
    mv debian/tmp_save_tests/* tests ; \
    rmdir debian/tmp_save_tests ; \
fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:8: installing './compile'
configure.ac:4: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for md5sum... md5sum
checking for __int128... no
checking whether strerror_r is declared... yes
checking for strerror_r... yes
checking whether strerror_r returns char *... yes
checking execinfo.h usability... yes
checking execinfo.h presence... yes
checking for execinfo.h... yes
checking sys/syscall.h usability... yes
checking sys/syscall.h presence... yes
checking for sys/syscall.h... yes
checking for siginfo_t.si_int... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tests/compat.sh
config.status: creating jellyfish-1.1.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/tmp_save_tests
cp -a tests/* debian/tmp_save_tests
dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all
	make -j1 all bin/generate_sequence bin/test_all
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make  all-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/jellyfish.o jellyfish/jellyfish.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/stats_main.o jellyfish/stats_main.cc
In file included from jellyfish/stats_main.cc:24:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]':
./jellyfish/raw_dumper.hpp:169:11:   required from 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; jellyfish::raw_hash::query<_storage_t>::storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
./jellyfish/raw_dumper.hpp:98:20:   required from 'jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
jellyfish/stats_main.cc:83:34:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/stats_main.cc:25:
./jellyfish/misc.hpp: In static member function 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/hash_merge.o jellyfish/hash_merge.cc
In file included from jellyfish/hash_merge.cc:32:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from ./jellyfish/mer_counting.hpp:31,
                 from jellyfish/hash_merge.cc:34:
./jellyfish/compacted_hash.hpp: In instantiation of 'void jellyfish::compacted_hash::writer<storage_t>::write_header(std::ostream*) const [with storage_t = jellyfish::compacted_hash::reader<long long unsigned int, long long unsigned int>; std::ostream = std::basic_ostream<char>]':
jellyfish/hash_merge.cc:189:43:   required from here
./jellyfish/compacted_hash.hpp:114:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct jellyfish::compacted_hash::header'; use assignment or value-initialization instead [-Wclass-memaccess]
  114 |         memset(&head, '\0', sizeof(head));
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
./jellyfish/compacted_hash.hpp:36:12: note: 'struct jellyfish::compacted_hash::header' declared here
   36 |     struct header {
      |            ^~~~~~
In file included from jellyfish/hash_merge.cc:32:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/hash_merge.cc:33:
./jellyfish/misc.hpp: In copy constructor 'SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/mer_counter.o jellyfish/mer_counter.cc
In file included from jellyfish/mer_counter.cc:33:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::invertible_hash::ErrorAllocation]':
./jellyfish/invertible_hash_array.hpp:116:11:   required from 'jellyfish::invertible_hash::array<word, atomic_t, mem_block_t>::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap; size_t = unsigned int; uint_t = long long unsigned int]'
jellyfish/mer_counter.cc:142:66:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::invertible_hash::InvalidMatrix]':
./jellyfish/invertible_hash_array.hpp:185:11:   required from 'void jellyfish::invertible_hash::array<word, atomic_t, mem_block_t>::set_matrix(SquareBinaryMatrix&) [with word = long long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]'
jellyfish/mer_counter.cc:149:24:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::double_fifo_input<jellyfish::sequence_parser::sequence_t>::Error]':
./jellyfish/double_fifo_input.hpp:101:7:   required from 'jellyfish::double_fifo_input<T>::double_fifo_input(long unsigned int) [with T = jellyfish::sequence_parser::sequence_t]'
./jellyfish/parse_dna.hpp:178:75:   required from 'jellyfish::parse_dna::parse_dna(T, T, uint_t, unsigned int, size_t) [with T = __gnu_cxx::__normal_iterator<const char* const*, std::vector<const char*> >; uint_t = long long unsigned int; size_t = unsigned int]'
jellyfish/mer_counter.cc:138:60:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from ./jellyfish/mer_counting.hpp:31,
                 from jellyfish/mer_counter.cc:38:
./jellyfish/compacted_hash.hpp: In instantiation of 'void jellyfish::compacted_hash::writer<storage_t>::write_header(std::ostream*) const [with storage_t = jellyfish::direct_indexing::array<long long unsigned int, jellyfish::capped_integer<unsigned int>, atomic::gcc, allocators::mmap>; std::ostream = std::basic_ostream<char>]':
./jellyfish/direct_sorted_dumper.hpp:101:39:   required from 'void jellyfish::direct_sorted_dumper<storage_t, atomic_t>::_dump() [with storage_t = jellyfish::direct_indexing::array<long long unsigned int, jellyfish::capped_integer<unsigned int>, atomic::gcc, allocators::mmap>; atomic_t = atomic::gcc]'
./jellyfish/direct_sorted_dumper.hpp:91:8:   required from here
./jellyfish/compacted_hash.hpp:114:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct jellyfish::compacted_hash::header'; use assignment or value-initialization instead [-Wclass-memaccess]
  114 |         memset(&head, '\0', sizeof(head));
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
./jellyfish/compacted_hash.hpp:36:12: note: 'struct jellyfish::compacted_hash::header' declared here
   36 |     struct header {
      |            ^~~~~~
./jellyfish/compacted_hash.hpp: In instantiation of 'void jellyfish::compacted_hash::writer<storage_t>::write_header(std::ostream*) const [with storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; std::ostream = std::basic_ostream<char>]':
./jellyfish/sorted_dumper.hpp:116:39:   required from 'void jellyfish::sorted_dumper<storage_t, atomic_t>::_dump() [with storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; atomic_t = atomic::gcc]'
./jellyfish/sorted_dumper.hpp:105:8:   required from here
./jellyfish/compacted_hash.hpp:114:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct jellyfish::compacted_hash::header'; use assignment or value-initialization instead [-Wclass-memaccess]
  114 |         memset(&head, '\0', sizeof(head));
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
./jellyfish/compacted_hash.hpp:36:12: note: 'struct jellyfish::compacted_hash::header' declared here
   36 |     struct header {
      |            ^~~~~~
In file included from jellyfish/mer_counter.cc:33:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::hash<long long unsigned int, jellyfish::Float, jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>, atomic::gcc>::TableFull]':
./jellyfish/hash.hpp:151:9:   required from 'void jellyfish::hash<key_t, val_t, ary_t, atomic>::dump() [with key_t = long long unsigned int; val_t = jellyfish::Float; ary_t = jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>; atomic = atomic::gcc]'
jellyfish/mer_counter.cc:114:17:   required from 'void mer_counting<parser_t, hash_t>::start(int) [with parser_t = jellyfish::parse_quake; hash_t = jellyfish::hash<long long unsigned int, jellyfish::Float, jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>, atomic::gcc>]'
jellyfish/mer_counter.cc:97:8:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::hash<long long unsigned int, jellyfish::capped_integer<unsigned int>, jellyfish::direct_indexing::array<long long unsigned int, jellyfish::capped_integer<unsigned int>, atomic::gcc, allocators::mmap>, atomic::gcc>::TableFull]':
./jellyfish/hash.hpp:151:9:   required from 'void jellyfish::hash<key_t, val_t, ary_t, atomic>::dump() [with key_t = long long unsigned int; val_t = jellyfish::capped_integer<unsigned int>; ary_t = jellyfish::direct_indexing::array<long long unsigned int, jellyfish::capped_integer<unsigned int>, atomic::gcc, allocators::mmap>; atomic = atomic::gcc]'
jellyfish/mer_counter.cc:114:17:   required from 'void mer_counting<parser_t, hash_t>::start(int) [with parser_t = jellyfish::parse_qual_dna; hash_t = jellyfish::hash<long long unsigned int, jellyfish::capped_integer<unsigned int>, jellyfish::direct_indexing::array<long long unsigned int, jellyfish::capped_integer<unsigned int>, atomic::gcc, allocators::mmap>, atomic::gcc>]'
jellyfish/mer_counter.cc:97:8:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::hash<long long unsigned int, long long unsigned int, jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>, atomic::gcc>::TableFull]':
./jellyfish/hash.hpp:151:9:   required from 'void jellyfish::hash<key_t, val_t, ary_t, atomic>::dump() [with key_t = long long unsigned int; val_t = long long unsigned int; ary_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; atomic = atomic::gcc]'
jellyfish/mer_counter.cc:114:17:   required from 'void mer_counting<parser_t, hash_t>::start(int) [with parser_t = jellyfish::parse_qual_dna; hash_t = jellyfish::hash<long long unsigned int, long long unsigned int, jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>, atomic::gcc>]'
jellyfish/mer_counter.cc:97:8:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/mer_counter.cc:36:
./jellyfish/misc.hpp: In member function 'void jellyfish::direct_sorted_dumper<storage_t, atomic_t>::_dump() [with storage_t = jellyfish::direct_indexing::array<long long unsigned int, jellyfish::capped_integer<unsigned int>, atomic::gcc, allocators::mmap>; atomic_t = atomic::gcc]':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
./jellyfish/misc.hpp: In member function 'void jellyfish::invertible_hash::array<word, atomic_t, mem_block_t>::set_matrix(SquareBinaryMatrix&) [with word = long long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/histo_main.o jellyfish/histo_main.cc
In file included from jellyfish/histo_main.cc:25:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]':
./jellyfish/raw_dumper.hpp:169:11:   required from 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; jellyfish::raw_hash::query<_storage_t>::storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
./jellyfish/raw_dumper.hpp:98:20:   required from 'jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
jellyfish/histo_main.cc:111:34:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/histo_main.cc:26:
./jellyfish/misc.hpp: In copy constructor 'SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
./jellyfish/misc.hpp: In static member function 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dump_main.o jellyfish/dump_main.cc
jellyfish/dump_main.cc: In function 'int dump_main(int, char**)':
jellyfish/dump_main.cc:86:24: warning: catching polymorphic type 'class mapped_file::ErrorMMap' by value [-Wcatch-value=]
   86 |   } catch(mapped_file::ErrorMMap) {
      |                        ^~~~~~~~~
In file included from jellyfish/dump_main.cc:24:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]':
./jellyfish/raw_dumper.hpp:169:11:   required from 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; jellyfish::raw_hash::query<_storage_t>::storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
./jellyfish/raw_dumper.hpp:98:20:   required from 'jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
jellyfish/dump_main.cc:65:44:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/dump_main.cc:25:
./jellyfish/misc.hpp: In static member function 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/query_main.o jellyfish/query_main.cc
In file included from ./jellyfish/mapped_file.hpp:29,
                 from ./jellyfish/hash.hpp:27,
                 from ./jellyfish/mer_counting.hpp:28,
                 from jellyfish/query_main.cc:24:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]':
./jellyfish/raw_dumper.hpp:169:11:   required from 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; jellyfish::raw_hash::query<_storage_t>::storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
./jellyfish/raw_dumper.hpp:98:20:   required from 'jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
jellyfish/query_main.cc:63:34:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/query_main.cc:23:
./jellyfish/misc.hpp: In static member function 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dump_fastq_main.o jellyfish/dump_fastq_main.cc
In file included from jellyfish/dump_fastq_main.cc:25:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/dump_fastq_main.cc:26:
./jellyfish/misc.hpp: In static member function 'static storage_t* jellyfish::fastq_hash::raw_dumper<storage_t>::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>]':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/histo_fastq_main.o jellyfish/histo_fastq_main.cc
In file included from jellyfish/histo_fastq_main.cc:26:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/histo_fastq_main.cc:27:
./jellyfish/misc.hpp: In static member function 'static storage_t* jellyfish::fastq_hash::raw_dumper<storage_t>::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>]':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/cite.o jellyfish/cite.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/hash_fastq_merge.o jellyfish/hash_fastq_merge.cc
In file included from jellyfish/hash_fastq_merge.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::hash<long long unsigned int, jellyfish::Float, jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>, atomic::gcc>::TableFull]':
./jellyfish/hash.hpp:151:9:   required from 'void jellyfish::hash<key_t, val_t, ary_t, atomic>::dump() [with key_t = long long unsigned int; val_t = jellyfish::Float; ary_t = jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>; atomic = atomic::gcc]'
jellyfish/hash_fastq_merge.cc:49:13:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::invertible_hash::ErrorAllocation]':
./jellyfish/invertible_hash_array.hpp:116:11:   required from 'jellyfish::invertible_hash::array<word, atomic_t, mem_block_t>::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap; size_t = unsigned int; uint_t = long long unsigned int]'
./jellyfish/aligned_values_array.hpp:42:30:   required from 'jellyfish::aligned_values::array<_key_t, _val_t, atomic, mem_block_t>::array(size_t, uint_t, uint_t, size_t*) [with _key_t = long long unsigned int; _val_t = jellyfish::Float; atomic = atomic::gcc; mem_block_t = allocators::mmap; size_t = unsigned int; uint_t = long long unsigned int]'
jellyfish/hash_fastq_merge.cc:28:79:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/hash_fastq_merge.cc:18:
./jellyfish/misc.hpp: In static member function 'static storage_t* jellyfish::fastq_hash::raw_dumper<storage_t>::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>]':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/yaggo.o jellyfish/yaggo.cpp
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/square_binary_matrix.lo jellyfish/square_binary_matrix.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/square_binary_matrix.cc  -fPIC -DPIC -o jellyfish/.libs/square_binary_matrix.o
In file included from ./jellyfish/square_binary_matrix.hpp:27,
                 from jellyfish/square_binary_matrix.cc:21:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::SingularMatrix]':
jellyfish/square_binary_matrix.cc:93:2:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/square_binary_matrix.cc:20:
./jellyfish/misc.hpp: In member function 'SquareBinaryMatrix SquareBinaryMatrix::transpose() const':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
In file included from jellyfish/square_binary_matrix.cc:21:
./jellyfish/square_binary_matrix.hpp: In member function 'void SquareBinaryMatrix::alloc_columns()':
./jellyfish/square_binary_matrix.hpp:55:13: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
   55 |     columns = first_alloc(size);
      |     ~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from jellyfish/square_binary_matrix.cc:20:
./jellyfish/misc.hpp: In member function 'SquareBinaryMatrix SquareBinaryMatrix::inverse() const':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
  106 |   Tptr<T> ptr;
      |           ^~~
In file included from jellyfish/square_binary_matrix.cc:21:
./jellyfish/square_binary_matrix.hpp:87:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
   87 |       free(columns);
      |       ~~~~^~~~~~~~~
In file included from jellyfish/square_binary_matrix.cc:20:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
  106 |   Tptr<T> ptr;
      |           ^~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/square_binary_matrix.cc -o jellyfish/square_binary_matrix.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/err.lo jellyfish/err.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/err.cc  -fPIC -DPIC -o jellyfish/.libs/err.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/err.cc -o jellyfish/err.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/misc.lo jellyfish/misc.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/misc.cc  -fPIC -DPIC -o jellyfish/.libs/misc.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/misc.cc -o jellyfish/misc.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/storage.lo jellyfish/storage.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/storage.cc  -fPIC -DPIC -o jellyfish/.libs/storage.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/storage.cc -o jellyfish/storage.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/thread_exec.lo jellyfish/thread_exec.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/thread_exec.cc  -fPIC -DPIC -o jellyfish/.libs/thread_exec.o
In file included from jellyfish/thread_exec.hpp:26,
                 from jellyfish/thread_exec.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = thread_exec::Error]':
jellyfish/thread_exec.cc:28:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/thread_exec.cc -o jellyfish/thread_exec.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/time.lo jellyfish/time.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/time.cc  -fPIC -DPIC -o jellyfish/.libs/time.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/time.cc -o jellyfish/time.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/file_parser.lo jellyfish/file_parser.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/file_parser.cc  -fPIC -DPIC -o jellyfish/.libs/file_parser.o
In file included from jellyfish/file_parser.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]':
jellyfish/file_parser.cc:33:5:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/file_parser.cc -o jellyfish/file_parser.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/read_parser.lo jellyfish/read_parser.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/read_parser.cc  -fPIC -DPIC -o jellyfish/.libs/read_parser.o
In file included from ./jellyfish/file_parser.hpp:24,
                 from ./jellyfish/read_parser.hpp:20,
                 from jellyfish/read_parser.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]':
jellyfish/read_parser.cc:30:5:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/read_parser.cc -o jellyfish/read_parser.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_read.lo jellyfish/parse_read.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_read.cc  -fPIC -DPIC -o jellyfish/.libs/parse_read.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_read.cc -o jellyfish/parse_read.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/half.lo jellyfish/half.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/half.cpp  -fPIC -DPIC -o jellyfish/.libs/half.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/half.cpp -o jellyfish/half.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/mapped_file.lo jellyfish/mapped_file.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/mapped_file.cc  -fPIC -DPIC -o jellyfish/.libs/mapped_file.o
In file included from ./jellyfish/mapped_file.hpp:29,
                 from jellyfish/mapped_file.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/mapped_file.cc -o jellyfish/mapped_file.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_dna.lo jellyfish/parse_dna.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_dna.cc  -fPIC -DPIC -o jellyfish/.libs/parse_dna.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_dna.cc -o jellyfish/parse_dna.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_quake.lo jellyfish/parse_quake.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_quake.cc  -fPIC -DPIC -o jellyfish/.libs/parse_quake.o
In file included from ./jellyfish/double_fifo_input.hpp:23,
                 from ./jellyfish/parse_quake.hpp:22,
                 from jellyfish/parse_quake.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::double_fifo_input<jellyfish::seq_qual_parser::sequence_t>::Error]':
./jellyfish/double_fifo_input.hpp:101:7:   required from 'jellyfish::double_fifo_input<T>::double_fifo_input(long unsigned int) [with T = jellyfish::seq_qual_parser::sequence_t]'
jellyfish/parse_quake.cc:27:40:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_quake.cc -o jellyfish/parse_quake.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_qual_dna.lo jellyfish/parse_qual_dna.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_qual_dna.cc  -fPIC -DPIC -o jellyfish/.libs/parse_qual_dna.o
In file included from ./jellyfish/double_fifo_input.hpp:23,
                 from ./jellyfish/parse_qual_dna.hpp:22,
                 from jellyfish/parse_qual_dna.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::double_fifo_input<jellyfish::seq_qual_parser::sequence_t>::Error]':
./jellyfish/double_fifo_input.hpp:101:7:   required from 'jellyfish::double_fifo_input<T>::double_fifo_input(long unsigned int) [with T = jellyfish::seq_qual_parser::sequence_t]'
jellyfish/parse_qual_dna.cc:27:55:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_qual_dna.cc -o jellyfish/parse_qual_dna.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/sequence_parser.lo jellyfish/sequence_parser.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/sequence_parser.cc  -fPIC -DPIC -o jellyfish/.libs/sequence_parser.o
jellyfish/sequence_parser.cc: In member function 'virtual bool jellyfish::fasta_sequence_parser::parse(char*, char**)':
jellyfish/sequence_parser.cc:43:5: warning: case label value is less than minimum value for type [-Wswitch-outside-range]
   43 |     case _eof:
      |     ^~~~
In file included from ./jellyfish/sequence_parser.hpp:21,
                 from jellyfish/sequence_parser.cc:18:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]':
jellyfish/sequence_parser.cc:32:5:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/sequence_parser.cc -o jellyfish/sequence_parser.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/seq_qual_parser.lo jellyfish/seq_qual_parser.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/seq_qual_parser.cc  -fPIC -DPIC -o jellyfish/.libs/seq_qual_parser.o
In file included from ./jellyfish/seq_qual_parser.hpp:21,
                 from jellyfish/seq_qual_parser.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]':
jellyfish/seq_qual_parser.cc:31:5:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_seq_qual_parser::FastqSeqQualParserError]':
jellyfish/seq_qual_parser.cc:47:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9:   required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:53:   required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/seq_qual_parser.cc -o jellyfish/seq_qual_parser.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/backtrace.lo jellyfish/backtrace.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/backtrace.cc  -fPIC -DPIC -o jellyfish/.libs/backtrace.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/backtrace.cc -o jellyfish/backtrace.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/floats.lo jellyfish/floats.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/floats.cc  -fPIC -DPIC -o jellyfish/.libs/floats.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/floats.cc -o jellyfish/floats.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dbg.lo jellyfish/dbg.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dbg.cc  -fPIC -DPIC -o jellyfish/.libs/dbg.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dbg.cc -o jellyfish/dbg.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/allocators_mmap.lo jellyfish/allocators_mmap.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/allocators_mmap.cc  -fPIC -DPIC -o jellyfish/.libs/allocators_mmap.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/allocators_mmap.cc -o jellyfish/allocators_mmap.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dna_codes.lo jellyfish/dna_codes.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dna_codes.cc  -fPIC -DPIC -o jellyfish/.libs/dna_codes.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dna_codes.cc -o jellyfish/dna_codes.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=link g++ -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:1:0 -Wl,-z,relro -Wl,-z,now -o libjellyfish-1.1.la -rpath /usr/lib/arm-linux-gnueabihf jellyfish/square_binary_matrix.lo jellyfish/err.lo jellyfish/misc.lo jellyfish/storage.lo jellyfish/thread_exec.lo jellyfish/time.lo jellyfish/file_parser.lo jellyfish/read_parser.lo jellyfish/parse_read.lo jellyfish/half.lo jellyfish/mapped_file.lo jellyfish/parse_dna.lo jellyfish/parse_quake.lo jellyfish/parse_qual_dna.lo jellyfish/sequence_parser.lo jellyfish/seq_qual_parser.lo jellyfish/backtrace.lo jellyfish/floats.lo jellyfish/dbg.lo jellyfish/allocators_mmap.lo jellyfish/dna_codes.lo  
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/10/crtbeginS.o  jellyfish/.libs/square_binary_matrix.o jellyfish/.libs/err.o jellyfish/.libs/misc.o jellyfish/.libs/storage.o jellyfish/.libs/thread_exec.o jellyfish/.libs/time.o jellyfish/.libs/file_parser.o jellyfish/.libs/read_parser.o jellyfish/.libs/parse_read.o jellyfish/.libs/half.o jellyfish/.libs/mapped_file.o jellyfish/.libs/parse_dna.o jellyfish/.libs/parse_quake.o jellyfish/.libs/parse_qual_dna.o jellyfish/.libs/sequence_parser.o jellyfish/.libs/seq_qual_parser.o jellyfish/.libs/backtrace.o jellyfish/.libs/floats.o jellyfish/.libs/dbg.o jellyfish/.libs/allocators_mmap.o jellyfish/.libs/dna_codes.o   -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/10/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/10/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/crtn.o  -g -O3 -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,libjellyfish-1.1.so.1 -o .libs/libjellyfish-1.1.so.1.0.1
libtool: link: (cd ".libs" && rm -f "libjellyfish-1.1.so.1" && ln -s "libjellyfish-1.1.so.1.0.1" "libjellyfish-1.1.so.1")
libtool: link: (cd ".libs" && rm -f "libjellyfish-1.1.so" && ln -s "libjellyfish-1.1.so.1.0.1" "libjellyfish-1.1.so")
libtool: link: ar cr .libs/libjellyfish-1.1.a  jellyfish/square_binary_matrix.o jellyfish/err.o jellyfish/misc.o jellyfish/storage.o jellyfish/thread_exec.o jellyfish/time.o jellyfish/file_parser.o jellyfish/read_parser.o jellyfish/parse_read.o jellyfish/half.o jellyfish/mapped_file.o jellyfish/parse_dna.o jellyfish/parse_quake.o jellyfish/parse_qual_dna.o jellyfish/sequence_parser.o jellyfish/seq_qual_parser.o jellyfish/backtrace.o jellyfish/floats.o jellyfish/dbg.o jellyfish/allocators_mmap.o jellyfish/dna_codes.o
libtool: link: ranlib .libs/libjellyfish-1.1.a
libtool: link: ( cd ".libs" && rm -f "libjellyfish-1.1.la" && ln -s "../libjellyfish-1.1.la" "libjellyfish-1.1.la" )
/bin/bash ./libtool  --tag=CXX   --mode=link g++ -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -lpthread  -Wl,--as-needed -latomic -Wl,-z,relro -Wl,-z,now -o bin/jellyfish jellyfish/jellyfish.o jellyfish/stats_main.o jellyfish/hash_merge.o jellyfish/mer_counter.o jellyfish/histo_main.o jellyfish/dump_main.o jellyfish/query_main.o jellyfish/dump_fastq_main.o jellyfish/histo_fastq_main.o jellyfish/cite.o jellyfish/hash_fastq_merge.o jellyfish/yaggo.o libjellyfish-1.1.la 
libtool: link: g++ -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/jellyfish jellyfish/jellyfish.o jellyfish/stats_main.o jellyfish/hash_merge.o jellyfish/mer_counter.o jellyfish/histo_main.o jellyfish/dump_main.o jellyfish/query_main.o jellyfish/dump_fastq_main.o jellyfish/histo_fastq_main.o jellyfish/cite.o jellyfish/hash_fastq_merge.o jellyfish/yaggo.o  -lpthread -latomic ./.libs/libjellyfish-1.1.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/generate_sequence.o jellyfish/generate_sequence.cc
In file included from jellyfish/generate_sequence.cc:22:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from jellyfish/generate_sequence.cc:24:
./jellyfish/square_binary_matrix.hpp: In function 'uint64_t* SquareBinaryMatrix::first_alloc(size_t)':
./jellyfish/square_binary_matrix.hpp:46:12: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
   46 |     return res;
      |            ^~~
In file included from /usr/include/c++/10/vector:72,
                 from jellyfish/generate_sequence.cc:18:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void generate_sequence_args::parse(int, char**)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/mersenne.o jellyfish/mersenne.cpp
/bin/bash ./libtool  --tag=CXX   --mode=link g++ -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -lpthread -Wl,-z,relro -Wl,-z,now -o bin/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o libjellyfish-1.1.la 
libtool: link: g++ -g -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o  -lpthread ./.libs/libjellyfish-1.1.so
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/bin_test_all-test_offsets_key_value.o `test -f 'unit_tests/test_offsets_key_value.cc' || echo './'`unit_tests/test_offsets_key_value.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/bin_test_all-test_simple_circular_buffer.o `test -f 'unit_tests/test_simple_circular_buffer.cc' || echo './'`unit_tests/test_simple_circular_buffer.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/bin_test_all-test_square_binary_matrix.o `test -f 'unit_tests/test_square_binary_matrix.cc' || echo './'`unit_tests/test_square_binary_matrix.cc
unit_tests/test_square_binary_matrix.cc: In member function 'virtual void SquareBinaryMatrix_Initialization_Test::TestBody()':
unit_tests/test_square_binary_matrix.cc:81:48: warning: catching polymorphic type 'class SquareBinaryMatrix::SingularMatrix' by value [-Wcatch-value=]
   81 |     } catch(SquareBinaryMatrix::SingularMatrix e) {
      |                                                ^
In file included from ./jellyfish/square_binary_matrix.hpp:27,
                 from unit_tests/test_square_binary_matrix.cc:3:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
  123 |     ~raise_t() { throw err_t(oss.str()); }
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7:   required from here
./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate]
./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept'
In file included from unit_tests/test_square_binary_matrix.cc:3:
./jellyfish/square_binary_matrix.hpp: In function 'uint64_t* SquareBinaryMatrix::first_alloc(size_t)':
./jellyfish/square_binary_matrix.hpp:46:12: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
   46 |     return res;
      |            ^~~
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest -I./unit_tests/gtest/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/gtest/src/libgtest_main_a-gtest_main.o `test -f 'unit_tests/gtest/src/gtest_main.cc' || echo './'`unit_tests/gtest/src/gtest_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest -I./unit_tests/gtest/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/gtest/src/libgtest_a-gtest-all.o `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc
In file included from /usr/include/string.h:495,
                 from ./unit_tests/gtest/include/gtest/internal/gtest-port.h:195,
                 from ./unit_tests/gtest/include/gtest/internal/gtest-internal.h:40,
                 from ./unit_tests/gtest/include/gtest/gtest.h:57,
                 from unit_tests/gtest/src/gtest-all.cc:39:
In function 'char* strncpy(char*, const char*, size_t)',
    inlined from 'const char* testing::internal::posix::StrNCpy(char*, const char*, size_t)' at ./unit_tests/gtest/include/gtest/internal/gtest-port.h:1615:17,
    inlined from 'char* testing::internal::CloneString(const char*, size_t)' at ./unit_tests/gtest/src/gtest.cc:840:19,
    inlined from 'static const char* testing::internal::String::CloneCString(const char*)' at ./unit_tests/gtest/src/gtest.cc:851:39:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from unit_tests/gtest/src/gtest-all.cc:42:
./unit_tests/gtest/src/gtest.cc: In static member function 'static const char* testing::internal::String::CloneCString(const char*)':
./unit_tests/gtest/src/gtest.cc:851:39: note: length computed here
  851 |                     NULL : CloneString(c_str, strlen(c_str));
      |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
rm -f libgtest.a
ar cru libgtest.a unit_tests/gtest/src/libgtest_a-gtest-all.o 
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libgtest.a
rm -f libgtest_main.a
ar cru libgtest_main.a unit_tests/gtest/src/libgtest_main_a-gtest_main.o libgtest.a
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libgtest_main.a
/bin/bash ./libtool  --tag=CXX   --mode=link g++ -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -lpthread -Wl,-z,relro -Wl,-z,now -o bin/test_all unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_square_binary_matrix.o libgtest_main.a libgtest.a libjellyfish-1.1.la 
libtool: link: g++ -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/test_all unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_square_binary_matrix.o  -lpthread libgtest_main.a libgtest.a ./.libs/libjellyfish-1.1.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# dh_auto_test && true
echo "****************************************************** do not test for the moment ******************************************************"
****************************************************** do not test for the moment ******************************************************
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install --destdir=debian/tmp
	make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
 /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   libjellyfish-1.1.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-1.1.so.1.0.1 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so.1 || { rm -f libjellyfish-1.1.so.1 && ln -s libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so.1; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so || { rm -f libjellyfish-1.1.so && ln -s libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-1.1.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-1.1.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
 /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
  /bin/bash ./libtool   --mode=install /usr/bin/install -c bin/jellyfish '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: 'libjellyfish-1.1.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c bin/.libs/jellyfish /<<PKGBUILDDIR>>/debian/tmp/usr/bin/jellyfish
 /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-1.1.11/jellyfish'
 /usr/bin/install -c -m 644 jellyfish/allocators_malloc.hpp jellyfish/allocators_mmap.hpp jellyfish/allocators_shm.hpp jellyfish/atomic_gcc.hpp jellyfish/compacted_dumper.hpp jellyfish/compacted_hash.hpp jellyfish/concurrent_queues.hpp jellyfish/direct_indexing_array.hpp jellyfish/direct_sorted_dumper.hpp jellyfish/divisor.hpp jellyfish/dumper.hpp jellyfish/hash_function.hpp jellyfish/hash.hpp jellyfish/heap.hpp jellyfish/invertible_hash_array.hpp jellyfish/locking_hash_counters.hpp jellyfish/locks_pthread.hpp jellyfish/mapped_file.hpp jellyfish/mer_counting.hpp jellyfish/err.hpp jellyfish/misc.hpp jellyfish/offsets_key_value.hpp jellyfish/reversible_hash_function.hpp jellyfish/sorted_dumper.hpp jellyfish/square_binary_matrix.hpp jellyfish/storage.hpp jellyfish/thread_exec.hpp jellyfish/time.hpp jellyfish/token_ring.hpp jellyfish/raw_dumper.hpp jellyfish/capped_integer.hpp jellyfish/aligned_values_array.hpp jellyfish/fastq_dumper.hpp jellyfish/floats.hpp jellyfish/circular_buffer.hpp jellyfish/counter.hpp jellyfish/parse_quake.hpp jellyfish/parse_dna.hpp jellyfish/parse_qual_dna.hpp jellyfish/file_parser.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-1.1.11/jellyfish'
 /usr/bin/install -c -m 644 jellyfish/sequence_parser.hpp jellyfish/seq_qual_parser.hpp jellyfish/double_fifo_input.hpp jellyfish/read_parser.hpp jellyfish/parse_read.hpp jellyfish/simple_growing_array.hpp jellyfish/toFloat.h jellyfish/eLut.h jellyfish/dbg.hpp jellyfish/half.h jellyfish/backtrace.hpp jellyfish/dna_codes.hpp jellyfish/simple_circular_buffer.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-1.1.11/jellyfish'
 /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
 /usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
 /bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
 /usr/bin/install -c -m 644 jellyfish-1.1.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/tmp/usr/lib/jellyfish1
mv debian/tmp/usr/bin/* debian/tmp/usr/lib/jellyfish1
dh_install
find debian -name "*.a" -delete
find debian -name "*.la" -delete
find debian -name "*.so" -delete
find debian -name "pkgconfig" -type d | xargs rm -rf
# there is no development package for this version any more - remove header files to keep dh_missing happy
rm -rf debian/tmp/usr/include/jellyfish*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman
mv debian/jellyfish1/usr/share/man/man1/jellyfish.1 debian/jellyfish1/usr/share/man/man1/jellyfish1.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_lintian -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a -a
   dh_strip -a -a
   dh_makeshlibs -a -a
   dh_shlibdeps -a -a
dpkg-shlibdeps: warning: symbol pthread_cancel used by debian/jellyfish1/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol pthread_create used by debian/jellyfish1/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol pthread_join used by debian/jellyfish1/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/jellyfish1/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1 found in none of the libraries
dpkg-shlibdeps: warning: debian/jellyfish1/usr/lib/jellyfish1/jellyfish contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'jellyfish1' in '../jellyfish1_1.1.11-6_armhf.deb'.
dpkg-deb: building package 'jellyfish1-dbgsym' in '../jellyfish1-dbgsym_1.1.11-6_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../jellyfish1_1.1.11-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-09-03T06:37:01Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


jellyfish1_1.1.11-6_armhf.changes:
----------------------------------

Format: 1.8
Date: Sun, 29 Aug 2021 03:40:58 +0530
Source: jellyfish1
Binary: jellyfish1 jellyfish1-dbgsym
Architecture: armhf
Version: 1.1.11-6
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
 jellyfish1 - count k-mers in DNA sequences
Closes: 978842
Changes:
 jellyfish1 (1.1.11-6) unstable; urgency=medium
 .
   * Team Upload.
   * Get package building with autoconf 2.70 (Closes: #978842)
   * Bump Standards-Version to 4.6.0 (no changes needed)
Checksums-Sha1:
 6a41eed4e238e8b84f6338ea85d7d2e5880619c8 1104696 jellyfish1-dbgsym_1.1.11-6_armhf.deb
 a59c2aa253364c71c3f96579d975f3b2d2ad3119 4870 jellyfish1_1.1.11-6_armhf.buildinfo
 8e679a465a4c352878cea8d09c529ebc24e3b353 124460 jellyfish1_1.1.11-6_armhf.deb
Checksums-Sha256:
 e4873c826890911f924d5763bc7536b76e1c5dff7f99256ef42fd75a082e8a10 1104696 jellyfish1-dbgsym_1.1.11-6_armhf.deb
 7a019fa78ba8b6e0a26813ff42d778a07117cc0a500731c7a99d58b0b10cb3e2 4870 jellyfish1_1.1.11-6_armhf.buildinfo
 34e3e28eb2220d737a3b850a533492743c8c8f585cef790d98380b1ee1f6618a 124460 jellyfish1_1.1.11-6_armhf.deb
Files:
 8e6ca8c319a67f28d42634540612588b 1104696 debug optional jellyfish1-dbgsym_1.1.11-6_armhf.deb
 481e69ce53ae70b07d7d51c45118270b 4870 science optional jellyfish1_1.1.11-6_armhf.buildinfo
 401ce322beab3c55fe9c2faef17ee398 124460 science optional jellyfish1_1.1.11-6_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


jellyfish1-dbgsym_1.1.11-6_armhf.deb
------------------------------------

 new Debian package, version 2.0.
 size 1104696 bytes: control archive=648 bytes.
     426 bytes,    12 lines      control              
     302 bytes,     3 lines      md5sums              
 Package: jellyfish1-dbgsym
 Source: jellyfish1
 Version: 1.1.11-6
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1196
 Depends: jellyfish1 (= 1.1.11-6)
 Section: debug
 Priority: optional
 Description: debug symbols for jellyfish1
 Build-Ids: bc272db8c9a0bd3ada2255346b426ed0355684a9 c480dd8d0d7e2e1b3b4009454097f266f3d7cfbd

drwxr-xr-x root/root         0 2021-08-28 22:10 ./
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/lib/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/lib/debug/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/lib/debug/.build-id/bc/
-rw-r--r-- root/root    976448 2021-08-28 22:10 ./usr/lib/debug/.build-id/bc/272db8c9a0bd3ada2255346b426ed0355684a9.debug
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/lib/debug/.build-id/c4/
-rw-r--r-- root/root    204576 2021-08-28 22:10 ./usr/lib/debug/.build-id/c4/80dd8d0d7e2e1b3b4009454097f266f3d7cfbd.debug
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root     28684 2021-08-28 22:10 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/jellyfish1.debug
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/share/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/share/doc/
lrwxrwxrwx root/root         0 2021-08-28 22:10 ./usr/share/doc/jellyfish1-dbgsym -> jellyfish1


jellyfish1_1.1.11-6_armhf.deb
-----------------------------

 new Debian package, version 2.0.
 size 124460 bytes: control archive=1348 bytes.
    1310 bytes,    28 lines      control              
     507 bytes,     7 lines      md5sums              
      42 bytes,     1 lines      shlibs               
      67 bytes,     2 lines      triggers             
 Package: jellyfish1
 Version: 1.1.11-6
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 583
 Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
 Enhances: kraken
 Section: science
 Priority: optional
 Homepage: https://www.cbcb.umd.edu/software/jellyfish/
 Description: count k-mers in DNA sequences
  JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
  DNA. A k-mer is a substring of length k, and counting the occurrences
  of all such substrings is a central step in many analyses of DNA
  sequence. JELLYFISH can count k-mers using an order of magnitude less
  memory and an order of magnitude faster than other k-mer counting
  packages by using an efficient encoding of a hash table and by
  exploiting the "compare-and-swap" CPU instruction to increase
  parallelism.
  .
  JELLYFISH is a command-line program that reads FASTA and multi-FASTA
  files containing DNA sequences. It outputs its k-mer counts in an
  binary format, which can be translated into a human-readable text
  format using the "jellyfish dump" command.
  .
  This is the latest version of the 1.x series of jellyfish which is
  used by some other applications that are not compatible with version
  2.x which is provided inside the jellyfish package.

drwxr-xr-x root/root         0 2021-08-28 22:10 ./
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/bin/
lrwxrwxrwx root/root         0 2021-08-28 22:10 ./usr/bin/jellyfish1 -> ../lib/jellyfish1/jellyfish
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/lib/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root         0 2021-08-28 22:10 ./usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1 -> libjellyfish-1.1.so.1.0.1
-rw-r--r-- root/root    350764 2021-08-28 22:10 ./usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/lib/jellyfish1/
-rwxr-xr-x root/root    212672 2021-08-28 22:10 ./usr/lib/jellyfish1/jellyfish
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/share/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/share/doc/jellyfish1/
-rw-r--r-- root/root      2333 2013-05-29 19:45 ./usr/share/doc/jellyfish1/README
-rw-r--r-- root/root      1311 2021-08-28 22:10 ./usr/share/doc/jellyfish1/changelog.Debian.gz
-rw-r--r-- root/root      2337 2021-08-28 21:30 ./usr/share/doc/jellyfish1/copyright
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/share/lintian/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/share/lintian/overrides/
-rw-r--r-- root/root        66 2021-08-28 21:30 ./usr/share/lintian/overrides/jellyfish1
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/share/man/
drwxr-xr-x root/root         0 2021-08-28 22:10 ./usr/share/man/man1/
-rw-r--r-- root/root      4556 2021-08-28 22:10 ./usr/share/man/man1/jellyfish1.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 48808
Build-Time: 731
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 273
Job: jellyfish1_1.1.11-6
Machine Architecture: armhf
Package: jellyfish1
Package-Time: 1053
Source-Version: 1.1.11-6
Space: 48808
Status: successful
Version: 1.1.11-6
--------------------------------------------------------------------------------
Finished at 2021-09-03T06:37:01Z
Build needed 00:17:33, 48808k disc space