jellyfish1 →
1.1.11-3 →
armhf → 2017-09-16 15:51:46
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| jellyfish1 1.1.11-3 (armhf) Sat, 16 Sep 2017 15:32:41 +0000 |
+==============================================================================+
Package: jellyfish1
Version: 1.1.11-3
Source Version: 1.1.11-3
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-ece69f0c-2ce1-4d6a-a78f-2bd351ef07d7' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.0 MB]
Fetched 22.3 MB in 26s (835 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'jellyfish1' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/jellyfish1.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/jellyfish1.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1074 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main jellyfish1 1.1.11-3 (dsc) [2029 B]
Get:2 http://172.17.0.1/private buster-staging/main jellyfish1 1.1.11-3 (tar) [1067 kB]
Get:3 http://172.17.0.1/private buster-staging/main jellyfish1 1.1.11-3 (diff) [4648 B]
Fetched 1074 kB in 0s (2792 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/jellyfish1-jhc6Jr/jellyfish1-1.1.11' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/jellyfish1-jhc6Jr' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-DGsUoV/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-DGsUoV/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-DGsUoV/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (2999 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-DGsUoV/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 56 not upgraded.
Need to get 774 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [774 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15017 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10)
Filtered Build-Depends: debhelper (>= 10)
dpkg-deb: building package 'sbuild-build-depends-jellyfish1-dummy' in '/<<BUILDDIR>>/resolver-DGsUoV/apt_archive/sbuild-build-depends-jellyfish1-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-jellyfish1-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Sources [491 B]
Get:5 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Packages [570 B]
Fetched 2394 B in 0s (3774 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-DGsUoV/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install jellyfish1 build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4
man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4
man-db po-debconf sbuild-build-depends-jellyfish1-dummy
0 upgraded, 30 newly installed, 0 to remove and 56 not upgraded.
Need to get 18.6 MB of archives.
After this operation, 63.3 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-DGsUoV/apt_archive ./ sbuild-build-depends-jellyfish1-dummy 0.invalid.0 [780 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-4 [609 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-2.1 [736 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.53.6-1 [2644 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.8 [973 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libarchive-zip-perl (1.59-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.11-1) ...
Setting up groff-base (1.22.3-9) ...
Setting up libglib2.0-0:armhf (2.53.6-1) ...
No schema files found: doing nothing.
Setting up gettext-base (0.19.8.1-4) ...
Setting up libpipeline1:armhf (1.4.2-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-6) ...
Setting up libbsd0:armhf (0.8.6-2) ...
Setting up libxml2:armhf (2.9.4+dfsg1-4) ...
Setting up libmagic-mgc (1:5.32-1) ...
Setting up libmagic1:armhf (1:5.32-1) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Processing triggers for libc-bin (2.24-14) ...
Setting up autotools-dev (20161112.1) ...
Setting up bsdmainutils (9.0.12+nmu1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-4) ...
Setting up libfile-stripnondeterminism-perl (0.038-1) ...
Setting up gettext (0.19.8.1-4) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.15.1-2.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up po-debconf (1.0.20) ...
Setting up dh-autoreconf (14) ...
Setting up dh-strip-nondeterminism (0.038-1) ...
Setting up debhelper (10.8) ...
Setting up sbuild-build-depends-jellyfish1-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-14) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29-4+rpi1 dpkg-dev_1.18.24 g++-7_7.2.0-1 gcc-7_7.2.0-1 libc6-dev_2.24-14 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.116 apt_1.5~rc1 autoconf_2.69-11 automake_1:1.15.1-2.1 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.29-4+rpi1 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.1.0-2 cpp-7_7.2.0-1 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.8 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dirmngr_2.1.23-2 dmsetup_2:1.02.142-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-2 g++-7_7.2.0-1 gcc_4:7.1.0-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-1 gcc-7-base_7.2.0-1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.1.23-2 gnupg-agent_2.1.23-2 gnupg-l10n_2.1.23-2 gnupg-utils_2.1.23-2 gpg_2.1.23-2 gpg-agent_2.1.23-2 gpg-wks-client_2.1.23-2 gpg-wks-server_2.1.23-2 gpgconf_2.1.23-2 gpgsm_2.1.23-2 gpgv_2.1.23-2 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-10 libapt-pkg5.0_1.5~rc1 libarchive-zip-perl_1.59-1 libasan4_7.2.0-1 libassuan0_2.4.3-3 libatomic1_7.2.0-1 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libblkid1_2.29.2-2+rpi1 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.2.0-1 libcilkrts5_7.2.0-1 libcomerr2_1.43.6-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libdb5.3_5.3.28-13+rpi1 libdbus-1-3_1.11.16+really1.10.22-1 libdebconfclient0_0.229 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1+rpi1 libdrm2_2.4.82-1+rpi1 libfakeroot_1.22-1 libfdisk1_2.29.2-2+rpi1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-7-dev_7.2.0-1 libgcc1_1:7.2.0-1 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libglib2.0-0_2.53.6-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.15-2 libgomp1_7.2.0-1 libgpg-error0_1.27-3 libhogweed4_3.3-1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-3 libip4tc0_1.6.1-2 libisl15_0.18-1 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1+b2 libmpfr4_3.1.6~rc1-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libplymouth4_0.9.2-5 libpng16-16_1.6.32-1 libprocps6_2:3.3.12-3 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.6-1 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 libsystemd0_234-2.3 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.2.0-1 libudev1_234-2.3 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libxml2_2.9.4+dfsg1-4 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-14 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-5 pinentry-curses_1.0.0-2 plymouth_0.9.2-5 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-jellyfish1-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-2.3 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 udev_234-2.3 util-linux_2.29.2-2+rpi1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Sep 10 19:37:55 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./jellyfish1_1.1.11-3.dsc
dpkg-source: info: extracting jellyfish1 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking jellyfish1_1.1.11.orig.tar.gz
dpkg-source: info: unpacking jellyfish1_1.1.11-3.debian.tar.xz
dpkg-source: info: applying man
dpkg-source: info: applying arm64.patch
dpkg-source: info: applying mips.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-ece69f0c-2ce1-4d6a-a78f-2bd351ef07d7
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package jellyfish1
dpkg-buildpackage: info: source version 1.1.11-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build jellyfish1-1.1.11
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
dh_autoreconf_clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
if [ -d debian/tmp_save_tests ] ; then \
mv debian/tmp_save_tests/* tests ; \
rmdir debian/tmp_save_tests ; \
fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:9: installing './compile'
configure.ac:4: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking how to print strings... printf
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for md5sum... md5sum
checking for __int128... no
checking whether strerror_r is declared... yes
checking for strerror_r... yes
checking whether strerror_r returns char *... yes
checking execinfo.h usability... yes
checking execinfo.h presence... yes
checking for execinfo.h... yes
checking sys/syscall.h usability... yes
checking sys/syscall.h presence... yes
checking for sys/syscall.h... yes
checking for siginfo_t.si_int... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tests/compat.sh
config.status: creating jellyfish-1.1.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/tmp_save_tests
cp -a tests/* debian/tmp_save_tests
dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all
make -j1 all bin/generate_sequence bin/test_all
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make all-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/square_binary_matrix.lo jellyfish/square_binary_matrix.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/square_binary_matrix.cc -fPIC -DPIC -o jellyfish/.libs/square_binary_matrix.o
In file included from ./jellyfish/square_binary_matrix.hpp:27:0,
from jellyfish/square_binary_matrix.cc:21:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::SingularMatrix]':
jellyfish/square_binary_matrix.cc:93:2: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from jellyfish/square_binary_matrix.cc:21:0:
./jellyfish/square_binary_matrix.hpp: In member function 'void SquareBinaryMatrix::load(std::istream*)':
./jellyfish/square_binary_matrix.hpp:55:13: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
columns = first_alloc(size);
~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from jellyfish/square_binary_matrix.cc:20:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from jellyfish/square_binary_matrix.cc:21:0:
./jellyfish/square_binary_matrix.hpp: In member function 'SquareBinaryMatrix SquareBinaryMatrix::transpose() const':
./jellyfish/square_binary_matrix.hpp:61:82: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
explicit SquareBinaryMatrix(int _size) :columns(first_alloc(_size)), size(_size) {
^
In file included from jellyfish/square_binary_matrix.cc:20:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from jellyfish/square_binary_matrix.cc:21:0:
./jellyfish/square_binary_matrix.hpp: In member function 'size_t SquareBinaryMatrix::read(const char*)':
./jellyfish/square_binary_matrix.hpp:55:13: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
columns = first_alloc(size);
~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from jellyfish/square_binary_matrix.cc:20:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from jellyfish/square_binary_matrix.cc:21:0:
./jellyfish/square_binary_matrix.hpp: In member function 'SquareBinaryMatrix SquareBinaryMatrix::operator*(const SquareBinaryMatrix&) const':
./jellyfish/square_binary_matrix.hpp:61:82: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
explicit SquareBinaryMatrix(int _size) :columns(first_alloc(_size)), size(_size) {
^
In file included from jellyfish/square_binary_matrix.cc:20:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
./jellyfish/misc.hpp: In member function 'SquareBinaryMatrix SquareBinaryMatrix::inverse() const':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/square_binary_matrix.cc -o jellyfish/square_binary_matrix.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/err.lo jellyfish/err.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/err.cc -fPIC -DPIC -o jellyfish/.libs/err.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/err.cc -o jellyfish/err.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/misc.lo jellyfish/misc.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/misc.cc -fPIC -DPIC -o jellyfish/.libs/misc.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/misc.cc -o jellyfish/misc.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/storage.lo jellyfish/storage.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/storage.cc -fPIC -DPIC -o jellyfish/.libs/storage.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/storage.cc -o jellyfish/storage.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/thread_exec.lo jellyfish/thread_exec.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/thread_exec.cc -fPIC -DPIC -o jellyfish/.libs/thread_exec.o
In file included from jellyfish/thread_exec.hpp:26:0,
from jellyfish/thread_exec.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = thread_exec::Error]':
jellyfish/thread_exec.cc:28:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/thread_exec.cc -o jellyfish/thread_exec.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/time.lo jellyfish/time.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/time.cc -fPIC -DPIC -o jellyfish/.libs/time.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/time.cc -o jellyfish/time.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/file_parser.lo jellyfish/file_parser.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/file_parser.cc -fPIC -DPIC -o jellyfish/.libs/file_parser.o
In file included from jellyfish/file_parser.cc:17:0:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]':
jellyfish/file_parser.cc:33:5: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/file_parser.cc -o jellyfish/file_parser.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/read_parser.lo jellyfish/read_parser.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/read_parser.cc -fPIC -DPIC -o jellyfish/.libs/read_parser.o
In file included from ./jellyfish/file_parser.hpp:24:0,
from ./jellyfish/read_parser.hpp:20,
from jellyfish/read_parser.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]':
jellyfish/read_parser.cc:30:5: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/read_parser.cc -o jellyfish/read_parser.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_read.lo jellyfish/parse_read.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_read.cc -fPIC -DPIC -o jellyfish/.libs/parse_read.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_read.cc -o jellyfish/parse_read.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/half.lo jellyfish/half.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/half.cpp -fPIC -DPIC -o jellyfish/.libs/half.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/half.cpp -o jellyfish/half.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/mapped_file.lo jellyfish/mapped_file.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/mapped_file.cc -fPIC -DPIC -o jellyfish/.libs/mapped_file.o
In file included from ./jellyfish/mapped_file.hpp:29:0,
from jellyfish/mapped_file.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/mapped_file.cc -o jellyfish/mapped_file.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_dna.lo jellyfish/parse_dna.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_dna.cc -fPIC -DPIC -o jellyfish/.libs/parse_dna.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_dna.cc -o jellyfish/parse_dna.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_quake.lo jellyfish/parse_quake.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_quake.cc -fPIC -DPIC -o jellyfish/.libs/parse_quake.o
In file included from ./jellyfish/double_fifo_input.hpp:23:0,
from ./jellyfish/parse_quake.hpp:22,
from jellyfish/parse_quake.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::double_fifo_input<jellyfish::seq_qual_parser::sequence_t>::Error]':
./jellyfish/double_fifo_input.hpp:101:7: required from 'jellyfish::double_fifo_input<T>::double_fifo_input(long unsigned int) [with T = jellyfish::seq_qual_parser::sequence_t]'
jellyfish/parse_quake.cc:27:40: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_quake.cc -o jellyfish/parse_quake.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_qual_dna.lo jellyfish/parse_qual_dna.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_qual_dna.cc -fPIC -DPIC -o jellyfish/.libs/parse_qual_dna.o
In file included from ./jellyfish/double_fifo_input.hpp:23:0,
from ./jellyfish/parse_qual_dna.hpp:22,
from jellyfish/parse_qual_dna.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::double_fifo_input<jellyfish::seq_qual_parser::sequence_t>::Error]':
./jellyfish/double_fifo_input.hpp:101:7: required from 'jellyfish::double_fifo_input<T>::double_fifo_input(long unsigned int) [with T = jellyfish::seq_qual_parser::sequence_t]'
jellyfish/parse_qual_dna.cc:27:55: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_qual_dna.cc -o jellyfish/parse_qual_dna.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/sequence_parser.lo jellyfish/sequence_parser.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/sequence_parser.cc -fPIC -DPIC -o jellyfish/.libs/sequence_parser.o
jellyfish/sequence_parser.cc: In member function 'virtual bool jellyfish::fasta_sequence_parser::parse(char*, char**)':
jellyfish/sequence_parser.cc:43:5: warning: case label value is less than minimum value for type
case _eof:
^~~~
In file included from ./jellyfish/sequence_parser.hpp:21:0,
from jellyfish/sequence_parser.cc:18:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]':
jellyfish/sequence_parser.cc:32:5: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/sequence_parser.cc -o jellyfish/sequence_parser.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/seq_qual_parser.lo jellyfish/seq_qual_parser.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/seq_qual_parser.cc -fPIC -DPIC -o jellyfish/.libs/seq_qual_parser.o
In file included from ./jellyfish/seq_qual_parser.hpp:21:0,
from jellyfish/seq_qual_parser.cc:17:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]':
jellyfish/seq_qual_parser.cc:31:5: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_seq_qual_parser::FastqSeqQualParserError]':
jellyfish/seq_qual_parser.cc:47:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/seq_qual_parser.cc -o jellyfish/seq_qual_parser.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/backtrace.lo jellyfish/backtrace.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/backtrace.cc -fPIC -DPIC -o jellyfish/.libs/backtrace.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/backtrace.cc -o jellyfish/backtrace.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/floats.lo jellyfish/floats.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/floats.cc -fPIC -DPIC -o jellyfish/.libs/floats.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/floats.cc -o jellyfish/floats.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dbg.lo jellyfish/dbg.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dbg.cc -fPIC -DPIC -o jellyfish/.libs/dbg.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dbg.cc -o jellyfish/dbg.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/allocators_mmap.lo jellyfish/allocators_mmap.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/allocators_mmap.cc -fPIC -DPIC -o jellyfish/.libs/allocators_mmap.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/allocators_mmap.cc -o jellyfish/allocators_mmap.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dna_codes.lo jellyfish/dna_codes.cc
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dna_codes.cc -fPIC -DPIC -o jellyfish/.libs/dna_codes.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dna_codes.cc -o jellyfish/dna_codes.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:1:0 -Wl,-z,relro -Wl,-z,now -o libjellyfish-1.1.la -rpath /usr/lib/arm-linux-gnueabihf jellyfish/square_binary_matrix.lo jellyfish/err.lo jellyfish/misc.lo jellyfish/storage.lo jellyfish/thread_exec.lo jellyfish/time.lo jellyfish/file_parser.lo jellyfish/read_parser.lo jellyfish/parse_read.lo jellyfish/half.lo jellyfish/mapped_file.lo jellyfish/parse_dna.lo jellyfish/parse_quake.lo jellyfish/parse_qual_dna.lo jellyfish/sequence_parser.lo jellyfish/seq_qual_parser.lo jellyfish/backtrace.lo jellyfish/floats.lo jellyfish/dbg.lo jellyfish/allocators_mmap.lo jellyfish/dna_codes.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o jellyfish/.libs/square_binary_matrix.o jellyfish/.libs/err.o jellyfish/.libs/misc.o jellyfish/.libs/storage.o jellyfish/.libs/thread_exec.o jellyfish/.libs/time.o jellyfish/.libs/file_parser.o jellyfish/.libs/read_parser.o jellyfish/.libs/parse_read.o jellyfish/.libs/half.o jellyfish/.libs/mapped_file.o jellyfish/.libs/parse_dna.o jellyfish/.libs/parse_quake.o jellyfish/.libs/parse_qual_dna.o jellyfish/.libs/sequence_parser.o jellyfish/.libs/seq_qual_parser.o jellyfish/.libs/backtrace.o jellyfish/.libs/floats.o jellyfish/.libs/dbg.o jellyfish/.libs/allocators_mmap.o jellyfish/.libs/dna_codes.o -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O3 -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libjellyfish-1.1.so.1 -o .libs/libjellyfish-1.1.so.1.0.1
libtool: link: (cd ".libs" && rm -f "libjellyfish-1.1.so.1" && ln -s "libjellyfish-1.1.so.1.0.1" "libjellyfish-1.1.so.1")
libtool: link: (cd ".libs" && rm -f "libjellyfish-1.1.so" && ln -s "libjellyfish-1.1.so.1.0.1" "libjellyfish-1.1.so")
libtool: link: ar cru .libs/libjellyfish-1.1.a jellyfish/square_binary_matrix.o jellyfish/err.o jellyfish/misc.o jellyfish/storage.o jellyfish/thread_exec.o jellyfish/time.o jellyfish/file_parser.o jellyfish/read_parser.o jellyfish/parse_read.o jellyfish/half.o jellyfish/mapped_file.o jellyfish/parse_dna.o jellyfish/parse_quake.o jellyfish/parse_qual_dna.o jellyfish/sequence_parser.o jellyfish/seq_qual_parser.o jellyfish/backtrace.o jellyfish/floats.o jellyfish/dbg.o jellyfish/allocators_mmap.o jellyfish/dna_codes.o
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libjellyfish-1.1.a
libtool: link: ( cd ".libs" && rm -f "libjellyfish-1.1.la" && ln -s "../libjellyfish-1.1.la" "libjellyfish-1.1.la" )
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/jellyfish.o jellyfish/jellyfish.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/stats_main.o jellyfish/stats_main.cc
In file included from jellyfish/stats_main.cc:24:0:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]':
./jellyfish/raw_dumper.hpp:169:11: required from 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; jellyfish::raw_hash::query<_storage_t>::storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
./jellyfish/raw_dumper.hpp:98:20: required from 'jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
jellyfish/stats_main.cc:83:34: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/stats_main.cc:26:
./jellyfish/square_binary_matrix.hpp: In static member function 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]':
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/stats_main.cc:25:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/stats_main.cc:26:
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/stats_main.cc:25:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/hash_merge.o jellyfish/hash_merge.cc
In file included from jellyfish/hash_merge.cc:32:0:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from jellyfish/hash_merge.cc:33:0:
./jellyfish/misc.hpp: In function 'int merge_main(int, char**)':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
Tptr<T> ptr;
^~~
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/hash_merge.cc:34:
./jellyfish/square_binary_matrix.hpp:87:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
free(columns);
~~~~^~~~~~~~~
In file included from jellyfish/hash_merge.cc:33:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/mer_counter.o jellyfish/mer_counter.cc
In file included from jellyfish/mer_counter.cc:33:0:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::invertible_hash::ErrorAllocation]':
./jellyfish/invertible_hash_array.hpp:116:11: required from 'jellyfish::invertible_hash::array<word, atomic_t, mem_block_t>::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap; size_t = unsigned int; uint_t = long long unsigned int]'
jellyfish/mer_counter.cc:142:66: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::invertible_hash::InvalidMatrix]':
./jellyfish/invertible_hash_array.hpp:185:11: required from 'void jellyfish::invertible_hash::array<word, atomic_t, mem_block_t>::set_matrix(SquareBinaryMatrix&) [with word = long long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]'
jellyfish/mer_counter.cc:149:24: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::double_fifo_input<jellyfish::sequence_parser::sequence_t>::Error]':
./jellyfish/double_fifo_input.hpp:101:7: required from 'jellyfish::double_fifo_input<T>::double_fifo_input(long unsigned int) [with T = jellyfish::sequence_parser::sequence_t]'
./jellyfish/parse_dna.hpp:178:75: required from 'jellyfish::parse_dna::parse_dna(T, T, uint_t, unsigned int, size_t) [with T = __gnu_cxx::__normal_iterator<const char* const*, std::vector<const char*> >; uint_t = long long unsigned int; size_t = unsigned int]'
jellyfish/mer_counter.cc:138:60: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::hash<long long unsigned int, jellyfish::Float, jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>, atomic::gcc>::TableFull]':
./jellyfish/hash.hpp:151:9: required from 'void jellyfish::hash<key_t, val_t, ary_t, atomic>::dump() [with key_t = long long unsigned int; val_t = jellyfish::Float; ary_t = jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>; atomic = atomic::gcc]'
jellyfish/mer_counter.cc:114:7: required from 'void mer_counting<parser_t, hash_t>::start(int) [with parser_t = jellyfish::parse_quake; hash_t = jellyfish::hash<long long unsigned int, jellyfish::Float, jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>, atomic::gcc>]'
jellyfish/mer_counter.cc:379:1: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::hash<long long unsigned int, jellyfish::capped_integer<unsigned int>, jellyfish::direct_indexing::array<long long unsigned int, jellyfish::capped_integer<unsigned int>, atomic::gcc, allocators::mmap>, atomic::gcc>::TableFull]':
./jellyfish/hash.hpp:151:9: required from 'void jellyfish::hash<key_t, val_t, ary_t, atomic>::dump() [with key_t = long long unsigned int; val_t = jellyfish::capped_integer<unsigned int>; ary_t = jellyfish::direct_indexing::array<long long unsigned int, jellyfish::capped_integer<unsigned int>, atomic::gcc, allocators::mmap>; atomic = atomic::gcc]'
jellyfish/mer_counter.cc:114:7: required from 'void mer_counting<parser_t, hash_t>::start(int) [with parser_t = jellyfish::parse_qual_dna; hash_t = jellyfish::hash<long long unsigned int, jellyfish::capped_integer<unsigned int>, jellyfish::direct_indexing::array<long long unsigned int, jellyfish::capped_integer<unsigned int>, atomic::gcc, allocators::mmap>, atomic::gcc>]'
jellyfish/mer_counter.cc:379:1: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::hash<long long unsigned int, long long unsigned int, jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>, atomic::gcc>::TableFull]':
./jellyfish/hash.hpp:151:9: required from 'void jellyfish::hash<key_t, val_t, ary_t, atomic>::dump() [with key_t = long long unsigned int; val_t = long long unsigned int; ary_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; atomic = atomic::gcc]'
jellyfish/mer_counter.cc:114:7: required from 'void mer_counting<parser_t, hash_t>::start(int) [with parser_t = jellyfish::parse_qual_dna; hash_t = jellyfish::hash<long long unsigned int, long long unsigned int, jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>, atomic::gcc>]'
jellyfish/mer_counter.cc:379:1: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/mer_counter.cc:38:
./jellyfish/square_binary_matrix.hpp: In member function 'void jellyfish::direct_sorted_dumper<storage_t, atomic_t>::_dump() [with storage_t = jellyfish::direct_indexing::array<long long unsigned int, jellyfish::capped_integer<unsigned int>, atomic::gcc, allocators::mmap>; atomic_t = atomic::gcc]':
./jellyfish/square_binary_matrix.hpp:61:82: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
explicit SquareBinaryMatrix(int _size) :columns(first_alloc(_size)), size(_size) {
^
In file included from jellyfish/mer_counter.cc:36:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
./jellyfish/misc.hpp: In member function 'void jellyfish::invertible_hash::array<word, atomic_t, mem_block_t>::set_matrix(SquareBinaryMatrix&) [with word = long long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/mer_counter.cc:38:
./jellyfish/square_binary_matrix.hpp: In constructor 'jellyfish::invertible_hash::array<word, atomic_t, mem_block_t>::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]':
./jellyfish/square_binary_matrix.hpp:61:82: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
explicit SquareBinaryMatrix(int _size) :columns(first_alloc(_size)), size(_size) {
^
In file included from jellyfish/mer_counter.cc:36:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/histo_main.o jellyfish/histo_main.cc
In file included from jellyfish/histo_main.cc:25:0:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]':
./jellyfish/raw_dumper.hpp:169:11: required from 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; jellyfish::raw_hash::query<_storage_t>::storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
./jellyfish/raw_dumper.hpp:98:20: required from 'jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
jellyfish/histo_main.cc:111:34: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/histo_main.cc:27:
./jellyfish/square_binary_matrix.hpp: In static member function 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]':
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/histo_main.cc:26:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/histo_main.cc:27:
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/histo_main.cc:26:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
./jellyfish/misc.hpp: In function 'int histo_main(int, char**)':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dump_main.o jellyfish/dump_main.cc
In file included from jellyfish/dump_main.cc:24:0:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]':
./jellyfish/raw_dumper.hpp:169:11: required from 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; jellyfish::raw_hash::query<_storage_t>::storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
./jellyfish/raw_dumper.hpp:98:20: required from 'jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
jellyfish/dump_main.cc:65:44: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/dump_main.cc:26:
./jellyfish/square_binary_matrix.hpp: In static member function 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]':
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/dump_main.cc:25:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/dump_main.cc:26:
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/dump_main.cc:25:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/query_main.o jellyfish/query_main.cc
In file included from ./jellyfish/mapped_file.hpp:29:0,
from ./jellyfish/hash.hpp:27,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/query_main.cc:24:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]':
./jellyfish/raw_dumper.hpp:169:11: required from 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>; jellyfish::raw_hash::query<_storage_t>::storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
./jellyfish/raw_dumper.hpp:98:20: required from 'jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]'
jellyfish/query_main.cc:63:34: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/query_main.cc:24:
./jellyfish/square_binary_matrix.hpp: In static member function 'static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long long unsigned int, atomic::gcc, allocators::mmap>]':
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/query_main.cc:23:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/query_main.cc:24:
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/query_main.cc:23:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dump_fastq_main.o jellyfish/dump_fastq_main.cc
In file included from jellyfish/dump_fastq_main.cc:25:0:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/dump_fastq_main.cc:27:
./jellyfish/square_binary_matrix.hpp: In static member function 'static storage_t* jellyfish::fastq_hash::raw_dumper<storage_t>::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>]':
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/dump_fastq_main.cc:26:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/dump_fastq_main.cc:27:
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/dump_fastq_main.cc:26:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/histo_fastq_main.o jellyfish/histo_fastq_main.cc
In file included from jellyfish/histo_fastq_main.cc:26:0:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/histo_fastq_main.cc:28:
./jellyfish/square_binary_matrix.hpp: In static member function 'static storage_t* jellyfish::fastq_hash::raw_dumper<storage_t>::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>]':
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/histo_fastq_main.cc:27:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/histo_fastq_main.cc:28:
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/histo_fastq_main.cc:27:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/cite.o jellyfish/cite.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/hash_fastq_merge.o jellyfish/hash_fastq_merge.cc
In file included from jellyfish/hash_fastq_merge.cc:17:0:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = mapped_file::ErrorMMap]':
./jellyfish/mapped_file.hpp:46:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]':
./jellyfish/dumper.hpp:44:9: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]':
./jellyfish/compacted_hash.hpp:50:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]':
./jellyfish/fastq_dumper.hpp:46:11: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::hash<long long unsigned int, jellyfish::Float, jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>, atomic::gcc>::TableFull]':
./jellyfish/hash.hpp:151:9: required from 'void jellyfish::hash<key_t, val_t, ary_t, atomic>::dump() [with key_t = long long unsigned int; val_t = jellyfish::Float; ary_t = jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>; atomic = atomic::gcc]'
jellyfish/hash_fastq_merge.cc:49:13: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]':
./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array<T>::resize() [with T = char]'
./jellyfish/simple_growing_array.hpp:27:59: required from 'jellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = unsigned int]'
./jellyfish/seq_qual_parser.hpp:53:41: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = jellyfish::invertible_hash::ErrorAllocation]':
./jellyfish/invertible_hash_array.hpp:116:11: required from 'jellyfish::invertible_hash::array<word, atomic_t, mem_block_t>::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap; size_t = unsigned int; uint_t = long long unsigned int]'
./jellyfish/aligned_values_array.hpp:42:30: required from 'jellyfish::aligned_values::array<_key_t, _val_t, atomic, mem_block_t>::array(size_t, uint_t, uint_t, size_t*) [with _key_t = long long unsigned int; _val_t = jellyfish::Float; atomic = atomic::gcc; mem_block_t = allocators::mmap; size_t = unsigned int; uint_t = long long unsigned int]'
jellyfish/hash_fastq_merge.cc:28:79: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/hash_fastq_merge.cc:19:
./jellyfish/square_binary_matrix.hpp: In static member function 'static storage_t* jellyfish::fastq_hash::raw_dumper<storage_t>::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array<long long unsigned int, jellyfish::Float, atomic::gcc, allocators::mmap>]':
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/hash_fastq_merge.cc:18:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/hash_fastq_merge.cc:19:
./jellyfish/square_binary_matrix.hpp:64:112: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
SquareBinaryMatrix(const SquareBinaryMatrix &rhs) : columns(first_alloc(rhs.get_size())), size(rhs.get_size()) {
^
In file included from jellyfish/hash_fastq_merge.cc:18:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from ./jellyfish/hash.hpp:31:0,
from ./jellyfish/mer_counting.hpp:28,
from jellyfish/hash_fastq_merge.cc:19:
./jellyfish/square_binary_matrix.hpp: In function 'int hash_fastq_merge_main(int, char**)':
./jellyfish/square_binary_matrix.hpp:61:82: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
explicit SquareBinaryMatrix(int _size) :columns(first_alloc(_size)), size(_size) {
^
In file included from jellyfish/hash_fastq_merge.cc:18:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/yaggo.o jellyfish/yaggo.cpp
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -lpthread -Wl,--as-needed -latomic -Wl,-z,relro -Wl,-z,now -o bin/jellyfish jellyfish/jellyfish.o jellyfish/stats_main.o jellyfish/hash_merge.o jellyfish/mer_counter.o jellyfish/histo_main.o jellyfish/dump_main.o jellyfish/query_main.o jellyfish/dump_fastq_main.o jellyfish/histo_fastq_main.o jellyfish/cite.o jellyfish/hash_fastq_merge.o jellyfish/yaggo.o libjellyfish-1.1.la
libtool: link: g++ -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/jellyfish jellyfish/jellyfish.o jellyfish/stats_main.o jellyfish/hash_merge.o jellyfish/mer_counter.o jellyfish/histo_main.o jellyfish/dump_main.o jellyfish/query_main.o jellyfish/dump_fastq_main.o jellyfish/histo_fastq_main.o jellyfish/cite.o jellyfish/hash_fastq_merge.o jellyfish/yaggo.o -lpthread -latomic ./.libs/libjellyfish-1.1.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/generate_sequence.o jellyfish/generate_sequence.cc
In file included from jellyfish/generate_sequence.cc:22:0:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from /usr/include/c++/7/vector:69:0,
from jellyfish/generate_sequence.cc:18:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator {aka __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void generate_sequence_args::parse(int, char**)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from jellyfish/generate_sequence.cc:23:0:
./jellyfish/misc.hpp: In function 'int main(int, char**)':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
Tptr<T> ptr;
^~~
In file included from jellyfish/generate_sequence.cc:24:0:
./jellyfish/square_binary_matrix.hpp:87:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
free(columns);
~~~~^~~~~~~~~
In file included from jellyfish/generate_sequence.cc:23:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from jellyfish/generate_sequence.cc:24:0:
./jellyfish/square_binary_matrix.hpp:61:82: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
explicit SquareBinaryMatrix(int _size) :columns(first_alloc(_size)), size(_size) {
^
In file included from jellyfish/generate_sequence.cc:23:0:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/mersenne.o jellyfish/mersenne.cpp
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -lpthread -Wl,-z,relro -Wl,-z,now -o bin/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o libjellyfish-1.1.la
libtool: link: g++ -g -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o -lpthread ./.libs/libjellyfish-1.1.so
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/bin_test_all-test_offsets_key_value.o `test -f 'unit_tests/test_offsets_key_value.cc' || echo './'`unit_tests/test_offsets_key_value.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/bin_test_all-test_simple_circular_buffer.o `test -f 'unit_tests/test_simple_circular_buffer.cc' || echo './'`unit_tests/test_simple_circular_buffer.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/bin_test_all-test_square_binary_matrix.o `test -f 'unit_tests/test_square_binary_matrix.cc' || echo './'`unit_tests/test_square_binary_matrix.cc
In file included from ./jellyfish/square_binary_matrix.hpp:27:0,
from unit_tests/test_square_binary_matrix.cc:3:
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]':
./jellyfish/square_binary_matrix.hpp:45:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
~raise_t() { throw err_t(oss.str()); }
^
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
./jellyfish/err.hpp: In instantiation of 'err::raise_t<err_t>::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]':
./jellyfish/square_binary_matrix.hpp:54:7: required from here
./jellyfish/err.hpp:123:39: warning: throw will always call terminate() [-Wterminate]
./jellyfish/err.hpp:123:39: note: in C++11 destructors default to noexcept
In file included from unit_tests/test_square_binary_matrix.cc:3:0:
./jellyfish/square_binary_matrix.hpp: In constructor 'SquareBinaryMatrix::SquareBinaryMatrix(int)':
./jellyfish/square_binary_matrix.hpp:61:82: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
explicit SquareBinaryMatrix(int _size) :columns(first_alloc(_size)), size(_size) {
^
In file included from ./jellyfish/square_binary_matrix.hpp:28:0,
from unit_tests/test_square_binary_matrix.cc:3:
./jellyfish/misc.hpp: In member function 'virtual void SquareBinaryMatrix_Initialization_Test::TestBody()':
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
Tptr<T> ptr;
^~~
./jellyfish/misc.hpp:106:11: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
In file included from unit_tests/test_square_binary_matrix.cc:3:0:
./jellyfish/square_binary_matrix.hpp:61:82: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
explicit SquareBinaryMatrix(int _size) :columns(first_alloc(_size)), size(_size) {
^
In file included from ./jellyfish/square_binary_matrix.hpp:28:0,
from unit_tests/test_square_binary_matrix.cc:3:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from unit_tests/test_square_binary_matrix.cc:3:0:
./jellyfish/square_binary_matrix.hpp:61:82: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
explicit SquareBinaryMatrix(int _size) :columns(first_alloc(_size)), size(_size) {
^
In file included from ./jellyfish/square_binary_matrix.hpp:28:0,
from unit_tests/test_square_binary_matrix.cc:3:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
In file included from unit_tests/test_square_binary_matrix.cc:3:0:
./jellyfish/square_binary_matrix.hpp:61:82: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
explicit SquareBinaryMatrix(int _size) :columns(first_alloc(_size)), size(_size) {
^
In file included from ./jellyfish/square_binary_matrix.hpp:28:0,
from unit_tests/test_square_binary_matrix.cc:3:
./jellyfish/misc.hpp:106:11: note: 'ptr' was declared here
Tptr<T> ptr;
^~~
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest -I./unit_tests/gtest/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/gtest/src/libgtest_main_a-gtest_main.o `test -f 'unit_tests/gtest/src/gtest_main.cc' || echo './'`unit_tests/gtest/src/gtest_main.cc
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest -I./unit_tests/gtest/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/gtest/src/libgtest_a-gtest-all.o `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc
rm -f libgtest.a
ar cru libgtest.a unit_tests/gtest/src/libgtest_a-gtest-all.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libgtest.a
rm -f libgtest_main.a
ar cru libgtest_main.a unit_tests/gtest/src/libgtest_main_a-gtest_main.o libgtest.a
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libgtest_main.a
/bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -lpthread -Wl,-z,relro -Wl,-z,now -o bin/test_all unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_square_binary_matrix.o libgtest_main.a libgtest.a libjellyfish-1.1.la
libtool: link: g++ -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/test_all unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_square_binary_matrix.o -lpthread libgtest_main.a libgtest.a ./.libs/libjellyfish-1.1.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# dh_auto_test && true
echo "****************************************************** do not test for the moment ******************************************************"
****************************************************** do not test for the moment ******************************************************
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install --destdir=debian/tmp
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-1.1.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-1.1.so.1.0.1 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so.1 || { rm -f libjellyfish-1.1.so.1 && ln -s libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so.1; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so || { rm -f libjellyfish-1.1.so && ln -s libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-1.1.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-1.1.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c bin/jellyfish '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: 'libjellyfish-1.1.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c bin/.libs/jellyfish /<<PKGBUILDDIR>>/debian/tmp/usr/bin/jellyfish
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-1.1.11/jellyfish'
/usr/bin/install -c -m 644 jellyfish/allocators_malloc.hpp jellyfish/allocators_mmap.hpp jellyfish/allocators_shm.hpp jellyfish/atomic_gcc.hpp jellyfish/compacted_dumper.hpp jellyfish/compacted_hash.hpp jellyfish/concurrent_queues.hpp jellyfish/direct_indexing_array.hpp jellyfish/direct_sorted_dumper.hpp jellyfish/divisor.hpp jellyfish/dumper.hpp jellyfish/hash_function.hpp jellyfish/hash.hpp jellyfish/heap.hpp jellyfish/invertible_hash_array.hpp jellyfish/locking_hash_counters.hpp jellyfish/locks_pthread.hpp jellyfish/mapped_file.hpp jellyfish/mer_counting.hpp jellyfish/err.hpp jellyfish/misc.hpp jellyfish/offsets_key_value.hpp jellyfish/reversible_hash_function.hpp jellyfish/sorted_dumper.hpp jellyfish/square_binary_matrix.hpp jellyfish/storage.hpp jellyfish/thread_exec.hpp jellyfish/time.hpp jellyfish/token_ring.hpp jellyfish/raw_dumper.hpp jellyfish/capped_integer.hpp jellyfish/aligned_values_array.hpp jellyfish/fastq_dumper.hpp jellyfish/floats.hpp jellyfish/circular_buffer.hpp jellyfish/counter.hpp jellyfish/parse_quake.hpp jellyfish/parse_dna.hpp jellyfish/parse_qual_dna.hpp jellyfish/file_parser.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-1.1.11/jellyfish'
/usr/bin/install -c -m 644 jellyfish/sequence_parser.hpp jellyfish/seq_qual_parser.hpp jellyfish/double_fifo_input.hpp jellyfish/read_parser.hpp jellyfish/parse_read.hpp jellyfish/simple_growing_array.hpp jellyfish/toFloat.h jellyfish/eLut.h jellyfish/dbg.hpp jellyfish/half.h jellyfish/backtrace.hpp jellyfish/dna_codes.hpp jellyfish/simple_circular_buffer.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-1.1.11/jellyfish'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 jellyfish-1.1.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/tmp/usr/lib/jellyfish1
mv debian/tmp/usr/bin/* debian/tmp/usr/lib/jellyfish1
dh_install
find debian -name "*.a" -delete
find debian -name "*.la" -delete
find debian -name "*.so" -delete
find debian -name "pkgconfig" -type d | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman
mv debian/jellyfish1/usr/share/man/man1/jellyfish.1 debian/jellyfish1/usr/share/man/man1/jellyfish1.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol pthread_cancel used by debian/jellyfish1/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol pthread_create used by debian/jellyfish1/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/jellyfish1/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol pthread_join used by debian/jellyfish1/usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1 found in none of the libraries
dpkg-shlibdeps: warning: debian/jellyfish1/usr/lib/jellyfish1/jellyfish contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'jellyfish1' in '../jellyfish1_1.1.11-3_armhf.deb'.
dpkg-deb: building package 'jellyfish1-dbgsym' in '../jellyfish1-dbgsym_1.1.11-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../jellyfish1_1.1.11-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build jellyfish1-1.1.11
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-09-16T15:51:14Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
jellyfish1_1.1.11-3_armhf.changes:
----------------------------------
Format: 1.8
Date: Sun, 10 Sep 2017 21:35:54 +0200
Source: jellyfish1
Binary: jellyfish1
Architecture: armhf
Version: 1.1.11-3
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
jellyfish1 - count k-mers in DNA sequences
Closes: 875328
Changes:
jellyfish1 (1.1.11-3) unstable; urgency=medium
.
* Enable building on architectures mips(el) and others by linking libatomic
if needed (Thanks for the hint to Aaron M. Ucko <ucko@debian.org>)
Closes: #875328
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98bcf3b5f39ed20e65e17d597c0d0780ecf7bd85 4332 jellyfish1_1.1.11-3_armhf.buildinfo
4b88763385def8f21539f33ceaeced86be6f04ef 130608 jellyfish1_1.1.11-3_armhf.deb
Checksums-Sha256:
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5c7c1e54678c000b6c80cf29ed2a3c91eca792533b6785860f403dfc3ab9b0ac 4332 jellyfish1_1.1.11-3_armhf.buildinfo
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Files:
12727a689a13e33bcc20e60cf2cb434b 1230252 debug optional jellyfish1-dbgsym_1.1.11-3_armhf.deb
0de056ccb3919a8022423ddd7f4f1943 4332 science optional jellyfish1_1.1.11-3_armhf.buildinfo
069f446eba9e96a45d7c60a85c147b4f 130608 science optional jellyfish1_1.1.11-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
jellyfish1-dbgsym_1.1.11-3_armhf.deb
------------------------------------
new debian package, version 2.0.
size 1230252 bytes: control archive=516 bytes.
426 bytes, 12 lines control
212 bytes, 2 lines md5sums
Package: jellyfish1-dbgsym
Source: jellyfish1
Version: 1.1.11-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1317
Depends: jellyfish1 (= 1.1.11-3)
Section: debug
Priority: optional
Description: debug symbols for jellyfish1
Build-Ids: 3200b58bf3b4d25e5326a4bca9911c9cd5d033cd a9edd05d54eea88d9b9a35cec336627be60f3c22
drwxr-xr-x root/root 0 2017-09-10 19:35 ./
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/lib/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/lib/debug/.build-id/32/
-rw-r--r-- root/root 933996 2017-09-10 19:35 ./usr/lib/debug/.build-id/32/00b58bf3b4d25e5326a4bca9911c9cd5d033cd.debug
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/lib/debug/.build-id/a9/
-rw-r--r-- root/root 401576 2017-09-10 19:35 ./usr/lib/debug/.build-id/a9/edd05d54eea88d9b9a35cec336627be60f3c22.debug
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/share/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-09-10 19:35 ./usr/share/doc/jellyfish1-dbgsym -> jellyfish1
jellyfish1_1.1.11-3_armhf.deb
-----------------------------
new debian package, version 2.0.
size 130608 bytes: control archive=1260 bytes.
1309 bytes, 28 lines control
507 bytes, 7 lines md5sums
30 bytes, 1 lines shlibs
65 bytes, 2 lines triggers
Package: jellyfish1
Version: 1.1.11-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 610
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Enhances: kraken
Section: science
Priority: optional
Homepage: http://www.cbcb.umd.edu/software/jellyfish/
Description: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This is the latest version of the 1.x series of jellyfish which is
used by some other applications that are not compatible with version
2.x which is provided inside the jellyfish package.
drwxr-xr-x root/root 0 2017-09-10 19:35 ./
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/bin/
lrwxrwxrwx root/root 0 2017-09-10 19:35 ./usr/bin/jellyfish1 -> ../lib/jellyfish1/jellyfish
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/lib/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2017-09-10 19:35 ./usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1 -> libjellyfish-1.1.so.1.0.1
-rw-r--r-- root/root 354728 2017-09-10 19:35 ./usr/lib/arm-linux-gnueabihf/libjellyfish-1.1.so.1.0.1
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/lib/jellyfish1/
-rwxr-xr-x root/root 237112 2017-09-10 19:35 ./usr/lib/jellyfish1/jellyfish
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/share/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/share/doc/jellyfish1/
-rw-r--r-- root/root 2333 2013-05-29 19:45 ./usr/share/doc/jellyfish1/README
-rw-r--r-- root/root 1016 2017-09-10 19:35 ./usr/share/doc/jellyfish1/changelog.Debian.gz
-rw-r--r-- root/root 2337 2017-09-10 19:35 ./usr/share/doc/jellyfish1/copyright
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/share/lintian/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 66 2017-09-10 19:35 ./usr/share/lintian/overrides/jellyfish1
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/share/man/
drwxr-xr-x root/root 0 2017-09-10 19:35 ./usr/share/man/man1/
-rw-r--r-- root/root 4556 2017-09-10 19:35 ./usr/share/man/man1/jellyfish1.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 42888
Build-Time: 804
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 256
Job: jellyfish1_1.1.11-3
Machine Architecture: armhf
Package: jellyfish1
Package-Time: 1113
Source-Version: 1.1.11-3
Space: 42888
Status: successful
Version: 1.1.11-3
--------------------------------------------------------------------------------
Finished at 2017-09-16T15:51:14Z
Build needed 00:18:33, 42888k disc space