Build log for jellyfish (2.3.1-2+b4) on armhf

jellyfish → 2.3.1-2+b4 → armhf → 2024-01-21 17:38:21

sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023

+==============================================================================+
| jellyfish 2.3.1-2+b4 (armhf)                 Sun, 21 Jan 2024 17:32:37 +0000 |
+==============================================================================+

Package: jellyfish
Version: 2.3.1-2+b4
Source Version: 2.3.1-2
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-ffe5fab1-1f74-43de-8a05-b7df44531f43' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/jellyfish-xOpKNW/resolver-hbZPiO' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.4 MB in 5s (5573 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'jellyfish' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/jellyfish.git
Please use:
git clone https://salsa.debian.org/med-team/jellyfish.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 699 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main jellyfish 2.3.1-2 (dsc) [3282 B]
Get:2 http://172.17.4.1/private trixie-staging/main jellyfish 2.3.1-2 (tar) [682 kB]
Get:3 http://172.17.4.1/private trixie-staging/main jellyfish 2.3.1-2 (diff) [13.9 kB]
Fetched 699 kB in 0s (4565 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/jellyfish-xOpKNW/jellyfish-2.3.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/jellyfish-xOpKNW' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), d-shlibs, autoconf-archive, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, dh-sequence-python3, perl, chrpath, libhts-dev, dos2unix, samtools, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, autoconf-archive, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, dh-sequence-python3, perl, chrpath, libhts-dev, dos2unix, samtools, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [773 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [805 B]
Fetched 2187 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf autoconf-archive automake autopoint autotools-dev bc bsdextrautils
  bsdutils ca-certificates chrpath d-shlibs debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dos2unix dwz file gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libblkid1 libbrotli1 libbsd0
  libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev
  libdeflate0 libedit2 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu72
  libjs-jquery libjs-sphinxdoc libjs-underscore liblzma-dev liblzma5
  libmagic-mgc libmagic1 libmount1 libncurses6 libnghttp2-14 libpipeline1
  libpkgconf3 libproc2-0 libpsl5 libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal
  libpython3.11-stdlib librtmp1 libruby libruby3.1 libsmartcols1 libssh2-1
  libsub-override-perl libtool libuchardet0 libuuid1 libxml2 libyaml-0-2 m4
  man-db media-types mount netbase openssl pkg-config pkgconf pkgconf-bin
  po-debconf procps python3 python3-all python3-all-dev python3-dev
  python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
  python3-setuptools python3.11 python3.11-dev python3.11-minimal rake ruby
  ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1
  rubygems-integration samtools sensible-utils swig swig4.0 time util-linux
  xz-utils yaggo zlib1g zlib1g-dev
Suggested packages:
  gnu-standards autoconf-doc dh-make flit python3-build python3-installer
  python3-wheel gettext-doc libasprintf-dev libgettextpo-dev groff
  libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev
  libssh2-1-dev liblzma-doc cryptsetup-bin libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser nfs-common
  libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc
  python3.11-venv python3.11-doc binfmt-support ri ruby-dev bundler cwltool
  swig-doc swig-examples swig4.0-examples swig4.0-doc dosfstools kbd
  util-linux-extra util-linux-locales
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl javascript-common libgpm2
  publicsuffix libltdl-dev uuid-runtime libmail-sendmail-perl psmisc zip
  fonts-lato
The following NEW packages will be installed:
  autoconf autoconf-archive automake autopoint autotools-dev bc bsdextrautils
  ca-certificates chrpath d-shlibs debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dos2unix dwz file gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libcurl3-gnutls
  libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libedit2
  libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libhts-dev
  libhts3 libhtscodecs2 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore
  liblzma-dev libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1
  libpkgconf3 libproc2-0 libpsl5 libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal
  libpython3.11-stdlib librtmp1 libruby libruby3.1 libssh2-1
  libsub-override-perl libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db
  media-types netbase openssl pkg-config pkgconf pkgconf-bin po-debconf procps
  python3 python3-all python3-all-dev python3-dev python3-distutils
  python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools
  python3.11 python3.11-dev python3.11-minimal rake ruby ruby-net-telnet
  ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1
  rubygems-integration samtools sbuild-build-depends-main-dummy sensible-utils
  swig swig4.0 time yaggo zlib1g-dev
The following packages will be upgraded:
  bsdutils libblkid1 liblzma5 libmount1 libsmartcols1 libuuid1 mount
  util-linux xz-utils zlib1g
10 upgraded, 105 newly installed, 0 to remove and 44 not upgraded.
Need to get 50.3 MB of archives.
After this operation, 182 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [976 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.3-6 [87.1 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.3-6 [1113 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.3-6 [134 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf autoconf-archive all 20220903-3 [775 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.7-2 [801 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf zlib1g armhf 1:1.3.dfsg-3 [74.3 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.7-2 [1677 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf netbase all 6.4 [12.8 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf liblzma5 armhf 5.4.5-0.3 [227 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.3-6 [28.3 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.7-2 [1694 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.7-2 [590 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:18 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.3-6 [145 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.3-6 [168 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.3-6 [102 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libproc2-0 armhf 2:4.0.4-2 [54.9 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf procps armhf 2:4.0.4-2 [848 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf bc armhf 1.07.1-3 [101 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.1.4-2 [1375 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf time armhf 1.9-0.2 [47.2 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf xz-utils armhf 5.4.5-0.3 [499 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf chrpath armhf 0.16-2 [15.4 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf d-shlibs all 0.105 [10.7 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.9 [82.3 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.9 [956 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf python3-distutils all 3.11.5-1 [131 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-2 [241 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-2 [468 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20231223 [108 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf dos2unix armhf 7.5.1-1 [506 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.8-1 [120 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-4 [195 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.5.0-2+rpi1 [372 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libcurl4-gnutls-dev armhf 8.5.0-2+rpi1 [456 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libdeflate-dev armhf 1.18-1 [45.8 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libedit2 armhf 3.1-20230828-1 [76.0 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-2 [130 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libhtscodecs2 armhf 1.6.0-1 [60.3 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libhts3 armhf 1.18+ds-1 [380 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.3 [278 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libhts-dev armhf 1.18+ds-1 [1539 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 7.2.6-3 [149 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20231209-1 [80.5 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libpython3.11 armhf 3.11.7-2 [1670 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-dev armhf 3.11.7-2 [3287 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libpython3-dev armhf 3.11.4-5 [9432 B]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libpython3-all-dev armhf 3.11.4-5 [1068 B]
Get:93 http://172.17.4.1/private trixie-staging/main armhf rubygems-integration all 1.18 [6704 B]
Get:94 http://172.17.4.1/private trixie-staging/main armhf ruby3.1 armhf 3.1.2-8 [663 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf ruby-rubygems all 3.4.20-1 [309 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf ruby armhf 1:3.1 [5868 B]
Get:97 http://172.17.4.1/private trixie-staging/main armhf rake all 13.0.6-3 [83.9 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf ruby-net-telnet all 0.2.0-1 [13.1 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf ruby-webrick all 1.8.1-1 [51.4 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf ruby-xmlrpc all 0.3.2-2 [24.4 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf ruby-sdbm armhf 1.0.0-5+rpi1 [15.9 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libyaml-0-2 armhf 0.2.5-1 [44.6 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libruby3.1 armhf 3.1.2-8 [5019 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libruby armhf 1:3.1 [4968 B]
Get:105 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf python3-all armhf 3.11.4-5 [1060 B]
Get:109 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.7-2 [508 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.4-5 [26.2 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf python3-all-dev armhf 3.11.4-5 [1068 B]
Get:112 http://172.17.4.1/private trixie-staging/main armhf samtools armhf 1.19-1 [593 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf swig4.0 armhf 4.1.0-0.3 [1220 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf swig all 4.1.0-0.3 [321 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf yaggo all 1.5.11-1 [21.3 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 50.3 MB in 8s (6615 kB/s)
(Reading database ... 12735 files and directories currently installed.)
Preparing to unpack .../bsdutils_1%3a2.39.3-6_armhf.deb ...
Unpacking bsdutils (1:2.39.3-6) over (1:2.39.3-2) ...
Setting up bsdutils (1:2.39.3-6) ...
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Setting up autopoint (0.21-14) ...
Setting up d-shlibs (0.105) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up autoconf (2.71-3) ...
Setting up ruby-webrick (1.8.1-1) ...
Setting up liblzma-dev:armhf (5.4.5-0.3) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg-3) ...
Setting up mount (2.39.3-6) ...
Setting up sensible-utils (0.0.20) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up procps (2:4.0.4-2) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up libssh2-1:armhf (1.11.0-4) ...
Setting up netbase (6.4) ...
Setting up dos2unix (7.5.1-1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up swig4.0 (4.1.0-0.3) ...
Setting up openssl (3.1.4-2) ...
Setting up libbsd0:armhf (0.11.8-1) ...
Setting up libdeflate-dev:armhf (1.18-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up ruby-xmlrpc (0.3.2-2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up chrpath (0.16-2) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-14) ...
Setting up swig (4.1.0-0.3) ...
Setting up libtool (2.4.7-7) ...
Setting up libpython3.11-stdlib:armhf (3.11.7-2) ...
Setting up libedit2:armhf (3.1-20230828-1) ...
Setting up libcurl3-gnutls:armhf (8.5.0-2+rpi1) ...
Setting up libcurl4-gnutls-dev:armhf (8.5.0-2+rpi1) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up libjs-sphinxdoc (7.2.6-3) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libpython3-stdlib:armhf (3.11.4-5) ...
Setting up python3.11 (3.11.7-2) ...
Setting up libhts3:armhf (1.18+ds-1) ...
Setting up libpython3.11:armhf (3.11.7-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhts-dev:armhf (1.18+ds-1) ...
Setting up python3 (3.11.4-5) ...
Setting up rubygems-integration (1.18) ...
Setting up man-db (2.12.0-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up samtools (1.19-1) ...
Setting up libpython3.11-dev:armhf (3.11.7-2) ...
Setting up python3-lib2to3 (3.11.5-1) ...
Setting up python3-pkg-resources (68.1.2-2) ...
Setting up python3-distutils (3.11.5-1) ...
Setting up libpython3-dev:armhf (3.11.4-5) ...
Setting up python3-setuptools (68.1.2-2) ...
Setting up python3.11-dev (3.11.7-2) ...
Setting up python3-all (3.11.4-5) ...
Setting up debhelper (13.11.9) ...
Setting up libpython3-all-dev:armhf (3.11.4-5) ...
Setting up python3-dev (3.11.4-5) ...
Setting up dh-python (6.20231223) ...
Setting up python3-all-dev (3.11.4-5) ...
Setting up rake (13.0.6-3) ...
Setting up ruby3.1 (3.1.2-8) ...
Setting up libruby3.1:armhf (3.1.2-8) ...
Setting up libruby:armhf (1:3.1) ...
Setting up ruby (1:3.1) ...
Setting up yaggo (1.5.11-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up ruby-sdbm:armhf (1.0.0-5+rpi1) ...
Setting up ruby-rubygems (3.4.20-1) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 loong64 all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep  1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-7+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-7+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 autoconf-archive_20220903-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 bc_1.07.1-3 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20230311 chrpath_0.16-2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-7+rpi1 d-shlibs_0.105 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.9 debianutils_5.14 dh-autoreconf_20 dh-python_6.20231223 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dos2unix_7.5.1-1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-7+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-7+rpi1 gcc-13-base_13.2.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-7+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-7+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41-6+rpi1 libblkid1_2.39.3-6 libbrotli1_1.1.0-2 libbsd0_0.11.8-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcap-ng0_0.8.3-3 libcap2_1:2.66-4 libcc1-0_13.2.0-7+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.5.0-2+rpi1 libcurl4-gnutls-dev_8.5.0-2+rpi1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdeflate-dev_1.18-1 libdeflate0_1.18-1 libdpkg-perl_1.22.1+rpi1 libedit2_3.1-20230828-1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-13+rpi1 libgcc-13-dev_13.2.0-7+rpi1 libgcc-s1_13.2.0-7+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-7+rpi1 libgpg-error0_1.47-3 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhts-dev_1.18+ds-1 libhts3_1.18+ds-1 libhtscodecs2_1.6.0-1 libicu72_72.1-4 libidn2-0_2.3.4-1 libisl23_0.26-3 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_7.2.6-3 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblocale-gettext-perl_1.07-6 liblz4-1_1.9.4-1+rpi1+b1 liblzma-dev_5.4.5-0.3 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.3-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncurses6_6.4+20231209-1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-2 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1 libproc2-0_2:4.0.4-2 libpsl5_0.21.2-1+b1 libpython3-all-dev_3.11.4-5 libpython3-dev_3.11.4-5 libpython3-stdlib_3.11.4-5 libpython3.11_3.11.7-2 libpython3.11-dev_3.11.7-2 libpython3.11-minimal_3.11.7-2 libpython3.11-stdlib_3.11.7-2 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libruby_1:3.1 libruby3.1_3.1.2-8 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsmartcols1_2.39.3-6 libsqlite3-0_3.44.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-4 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 libsub-override-perl_0.10-1 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-glob-perl_0.11-3 libtext-iconv-perl_1.7-8 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libubsan1_13.2.0-7+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.2-2 libyaml-0-2_0.2.5-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 media-types_10.1.0 mount_2.39.3-6 nano_7.2-1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 netbase_6.4 openssl_3.1.4-2 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.36_5.36.0-10 pinentry-curses_1.2.1-3 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 procps_2:4.0.4-2 python3_3.11.4-5 python3-all_3.11.4-5 python3-all-dev_3.11.4-5 python3-dev_3.11.4-5 python3-distutils_3.11.5-1 python3-lib2to3_3.11.5-1 python3-minimal_3.11.4-5 python3-pkg-resources_68.1.2-2 python3-setuptools_68.1.2-2 python3.11_3.11.7-2 python3.11-dev_3.11.7-2 python3.11-minimal_3.11.7-2 rake_13.0.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 ruby_1:3.1 ruby-net-telnet_0.2.0-1 ruby-rubygems_3.4.20-1 ruby-sdbm_1.0.0-5+rpi1 ruby-webrick_1.8.1-1 ruby-xmlrpc_0.3.2-2 ruby3.1_3.1.2-8 rubygems-integration_1.18 samtools_1.19-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 swig_4.1.0-0.3 swig4.0_4.1.0-0.3 sysvinit-utils_3.08-5 tar_1.34+dfsg-1.3 time_1.9-0.2 tzdata_2023c-11 usr-is-merged_38 usrmerge_38 util-linux_2.39.3-6 xz-utils_5.4.5-0.3 yaggo_1.5.11-1 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: jellyfish
Binary: jellyfish, libjellyfish-2.0-2, libjellyfish-2.0-dev, python3-dna-jellyfish, libjellyfish-perl, jellyfish-examples
Architecture: amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 loong64 all
Version: 2.3.1-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Shaun Jackman <sjackman@debian.org>, Andreas Tille <tille@debian.org>, Michael R. Crusoe <crusoe@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/gmarcais/Jellyfish
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/jellyfish
Vcs-Git: https://salsa.debian.org/med-team/jellyfish.git
Testsuite: autopkgtest
Testsuite-Triggers: @builddeps@
Build-Depends: debhelper-compat (= 13), d-shlibs, autoconf-archive, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, dh-sequence-python3, perl, chrpath, libhts-dev, dos2unix, samtools
Package-List:
 jellyfish deb science optional arch=amd64,arm64,armel,armhf,i386,mips64el,ppc64el,hppa,hurd-i386,ia64,kfreebsd-amd64,kfreebsd-i386,riscv64,loong64
 jellyfish-examples deb science optional arch=all
 libjellyfish-2.0-2 deb libs optional arch=amd64,arm64,armel,armhf,i386,mips64el,ppc64el,hppa,hurd-i386,ia64,kfreebsd-amd64,kfreebsd-i386,riscv64,loong64
 libjellyfish-2.0-dev deb libdevel optional arch=amd64,arm64,armel,armhf,i386,mips64el,ppc64el,hppa,hurd-i386,ia64,kfreebsd-amd64,kfreebsd-i386,riscv64,loong64
 libjellyfish-perl deb perl optional arch=amd64,arm64,armel,armhf,i386,mips64el,ppc64el,hppa,hurd-i386,ia64,kfreebsd-amd64,kfreebsd-i386,riscv64,loong64
 python3-dna-jellyfish deb python optional arch=amd64,arm64,armel,armhf,i386,mips64el,ppc64el,hppa,hurd-i386,ia64,kfreebsd-amd64,kfreebsd-i386,riscv64,loong64
Checksums-Sha1:
 9aaf5f07cecf638544d27ca3de7cb7057184c92c 681990 jellyfish_2.3.1.orig.tar.gz
 3e2e3cd80e7dbf493cd330a52f0f4220e8d17c72 13924 jellyfish_2.3.1-2.debian.tar.xz
Checksums-Sha256:
 540d09457fb4e14b98c7f1428cf885c333e2d6ef4f6a3735aa06be13eb523d69 681990 jellyfish_2.3.1.orig.tar.gz
 1b431f9062e9379aa0fac783c008ae5328ba499b0fe82573f59082a023c7d144 13924 jellyfish_2.3.1-2.debian.tar.xz
Files:
 27fb29ad3edfe25d776cfbf98dcc8c0e 681990 jellyfish_2.3.1.orig.tar.gz
 026bc276a5b6db11f005a2d3a5aa7ea4 13924 jellyfish_2.3.1-2.debian.tar.xz

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gpgv: Signature made Mon Jan  1 11:45:50 2024 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./jellyfish_2.3.1-2.dsc: no acceptable signature found
dpkg-source: info: extracting jellyfish in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking jellyfish_2.3.1.orig.tar.gz
dpkg-source: info: unpacking jellyfish_2.3.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying manpage_whatis_entry.patch
dpkg-source: info: applying portability.patch
dpkg-source: info: applying test_needs_bash
dpkg-source: info: applying python3
dpkg-source: info: applying fix-32-bit.patch

Check disk space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 2.3.1-2+b4

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-ffe5fab1-1f74-43de-8a05-b7df44531f43
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package jellyfish
dpkg-buildpackage: info: source version 2.3.1-2+b4
dpkg-buildpackage: info: source distribution trixie-staging
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   dh_clean
   debian/rules execute_after_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if [ -d debian/tmp_save_tests ] ; then \
    mv debian/tmp_save_tests/* tests ; \
    rmdir debian/tmp_save_tests ; \
fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules binary-arch
dh binary-arch
   debian/rules override_dh_update_autotools_config
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# use python configuration from autoconf-archive
mv m4/m4-ax_python_devel.m4 /tmp
dh_update_autotools_config
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:8: installing './compile'
configure.ac:2: installing './config.guess'
configure.ac:2: installing './config.sub'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking 32-bit host C ABI... yes
checking for ELF binary format... yes
checking for the common suffixes of directories in the library search path... lib,lib,lib
checking for htslib... yes
checking for samtools... /usr/bin/samtools
checking for unix2dos... /usr/bin/unix2dos
checking for md5sum... md5sum
checking for yaggo... /usr/bin/yaggo
checking for x86 cpuid  output... unknown
checking for x86-AVX xgetbv  output... unknown
checking for __int128... no
checking for std::numeric_limits<__int128>... no
checking for _NSGetExecutablePath... no
checking for execinfo.h... yes
checking for ext/stdio_filebuf.h... yes
checking for sys/syscall.h... yes
checking for sys/prctl.h... yes
checking for siginfo_t.si_int... yes
checking for swig... /usr/bin/swig
checking SWIG version... 4.1.0
checking for SWIG library... /usr/share/swig4.0
checking for python... /usr/bin/python3
checking for a version of Python >= '2.1.0'... yes
checking for the sysconfig Python package... yes
checking for Python include path... -I/usr/include/python3.11
checking for Python library path... -L/usr/lib/arm-linux-gnueabihf -lpython3.11
checking for Python site-packages path... /usr/lib/python3.11/site-packages
checking for Python platform specific site-packages path... /usr/lib/python3.11/site-packages
checking python extra libraries... -ldl -lm
checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions
checking consistency of all components of python development environment... yes
checking for perl... /usr/bin/perl
checking for Perl prefix... /usr
checking for Perl extension include path... /usr/lib/arm-linux-gnueabihf/perl/5.36/CORE
checking for Perl extension target directory... /usr/lib/perl/5.36.0
checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
checking for Perl extensions linker flags... -shared -L/usr/local/lib -fstack-protector-strong
checking for posix_memalign... yes
checking for aligned_alloc... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating compat.sh
config.status: creating jellyfish-2.0.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
dh_auto_configure --sourcedirectory=swig/perl5
	cd swig/perl5 && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lpthread"
-I/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1 
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -lpthread 
-L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf 
Warning (mostly harmless): No library found for -ljellyfish-2.0
Generating a Unix-style Makefile
Writing Makefile for jellyfish
Writing MYMETA.yml and MYMETA.json
dh_auto_configure --sourcedirectory=swig/python --buildsystem=pybuild
I: pybuild base:305: python3.11 setup.py config 
mv /tmp/m4-ax_python_devel.m4 m4
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/tmp_save_tests
cp -a tests/* debian/tmp_save_tests
dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam
	make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/yaggo --license ./header-license -o sub_commands/count_main_cmdline.hpp sub_commands/count_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/info_main_cmdline.hpp sub_commands/info_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/dump_main_cmdline.hpp sub_commands/dump_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/histo_main_cmdline.hpp sub_commands/histo_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/stats_main_cmdline.hpp sub_commands/stats_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/merge_main_cmdline.hpp sub_commands/merge_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/bc_main_cmdline.hpp sub_commands/bc_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/query_main_cmdline.hpp sub_commands/query_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/cite_main_cmdline.hpp sub_commands/cite_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/mem_main_cmdline.hpp sub_commands/mem_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o jellyfish/generate_sequence_cmdline.hpp jellyfish/generate_sequence_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o jellyfish/fastq2sam_cmdline.hpp jellyfish/fastq2sam_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o unit_tests/test_main_cmdline.hpp unit_tests/test_main_cmdline.yaggo
/usr/bin/swig -c++ -python -I./../include -o swig/python/swig_wrap.cpp swig/jellyfish.i
/usr/bin/swig -c++ -perl5 -I./../include -o swig/perl5/swig_wrap.cpp swig/jellyfish.i
make  all-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/jellyfish.o sub_commands/jellyfish.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/count_main.o sub_commands/count_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/info_main.o sub_commands/info_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/dump_main.o sub_commands/dump_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/histo_main.o sub_commands/histo_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/stats_main.o sub_commands/stats_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/merge_main.o sub_commands/merge_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/bc_main.o sub_commands/bc_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/query_main.o sub_commands/query_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/cite_main.o sub_commands/cite_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o sub_commands/mem_main.o sub_commands/mem_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/merge_files.o jellyfish/merge_files.cc
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/rectangular_binary_matrix.lo lib/rectangular_binary_matrix.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/rectangular_binary_matrix.cc  -fPIC -DPIC -o lib/.libs/rectangular_binary_matrix.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/rectangular_binary_matrix.cc -o lib/rectangular_binary_matrix.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/mer_dna.lo lib/mer_dna.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/mer_dna.cc  -fPIC -DPIC -o lib/.libs/mer_dna.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/mer_dna.cc -o lib/mer_dna.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/storage.lo lib/storage.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/storage.cc  -fPIC -DPIC -o lib/.libs/storage.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/storage.cc -o lib/storage.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/allocators_mmap.lo lib/allocators_mmap.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/allocators_mmap.cc  -fPIC -DPIC -o lib/.libs/allocators_mmap.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/allocators_mmap.cc -o lib/allocators_mmap.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/misc.lo lib/misc.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/misc.cc  -fPIC -DPIC -o lib/.libs/misc.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/misc.cc -o lib/misc.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/int128.lo lib/int128.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/int128.cc  -fPIC -DPIC -o lib/.libs/int128.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/int128.cc -o lib/int128.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/thread_exec.lo lib/thread_exec.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/thread_exec.cc  -fPIC -DPIC -o lib/.libs/thread_exec.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/thread_exec.cc -o lib/thread_exec.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/jsoncpp.lo lib/jsoncpp.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/jsoncpp.cpp  -fPIC -DPIC -o lib/.libs/jsoncpp.o
In file included from /usr/include/c++/13/map:62,
                 from ./include/jellyfish/json.h:331,
                 from lib/jsoncpp.cpp:76:
/usr/include/c++/13/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair<const Json::Value::CZString, Json::Value>&}; _Key = Json::Value::CZString; _Val = std::pair<const Json::Value::CZString, Json::Value>; _KeyOfValue = std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >; _Compare = std::less<Json::Value::CZString>; _Alloc = std::allocator<std::pair<const Json::Value::CZString, Json::Value> >]’:
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<Json::Value::CZString, std::pair<const Json::Value::CZString, Json::Value>, std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >, std::less<Json::Value::CZString>, std::allocator<std::pair<const Json::Value::CZString, Json::Value> > >::const_iterator’ changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/map:63:
In member function ‘std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator> std::map<_Key, _Tp, _Compare, _Alloc>::insert(const_iterator, _Pair&&) [with _Pair = std::pair<const Json::Value::CZString, Json::Value>&; _Key = Json::Value::CZString; _Tp = Json::Value; _Compare = std::less<Json::Value::CZString>; _Alloc = std::allocator<std::pair<const Json::Value::CZString, Json::Value> >]’,
    inlined from ‘Json::Value& Json::Value::operator[](ArrayIndex)’ at lib/jsoncpp.cpp:2622:28:
/usr/include/c++/13/bits/stl_map.h:927:45: note: parameter passing for argument of type ‘std::map<Json::Value::CZString, Json::Value>::const_iterator’ {aka ‘std::_Rb_tree<Json::Value::CZString, std::pair<const Json::Value::CZString, Json::Value>, std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >, std::less<Json::Value::CZString>, std::allocator<std::pair<const Json::Value::CZString, Json::Value> > >::const_iterator’} changed in GCC 7.1
  927 |           return _M_t._M_emplace_hint_unique(__position,
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
  928 |                                              std::forward<_Pair>(__x));
      |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator> std::map<_Key, _Tp, _Compare, _Alloc>::insert(const_iterator, _Pair&&) [with _Pair = std::pair<const Json::Value::CZString, Json::Value>&; _Key = Json::Value::CZString; _Tp = Json::Value; _Compare = std::less<Json::Value::CZString>; _Alloc = std::allocator<std::pair<const Json::Value::CZString, Json::Value> >]’,
    inlined from ‘Json::Value& Json::Value::resolveReference(const char*, bool)’ at lib/jsoncpp.cpp:2687:28:
/usr/include/c++/13/bits/stl_map.h:927:45: note: parameter passing for argument of type ‘std::map<Json::Value::CZString, Json::Value>::const_iterator’ {aka ‘std::_Rb_tree<Json::Value::CZString, std::pair<const Json::Value::CZString, Json::Value>, std::_Select1st<std::pair<const Json::Value::CZString, Json::Value> >, std::less<Json::Value::CZString>, std::allocator<std::pair<const Json::Value::CZString, Json::Value> > >::const_iterator’} changed in GCC 7.1
  927 |           return _M_t._M_emplace_hint_unique(__position,
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
  928 |                                              std::forward<_Pair>(__x));
      |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/jsoncpp.cpp -o lib/jsoncpp.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/time.lo lib/time.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/time.cc  -fPIC -DPIC -o lib/.libs/time.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/time.cc -o lib/time.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o lib/generator_manager.lo lib/generator_manager.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/generator_manager.cc  -fPIC -DPIC -o lib/.libs/generator_manager.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c lib/generator_manager.cc -o lib/generator_manager.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=link g++  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -version-info 2:0:0 -Wl,-z,relro -Wl,-z,now -lpthread -o libjellyfish-2.0.la -rpath /usr/lib/arm-linux-gnueabihf lib/rectangular_binary_matrix.lo lib/mer_dna.lo lib/storage.lo lib/allocators_mmap.lo lib/misc.lo lib/int128.lo lib/thread_exec.lo lib/jsoncpp.lo lib/time.lo lib/generator_manager.lo  
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  lib/.libs/rectangular_binary_matrix.o lib/.libs/mer_dna.o lib/.libs/storage.o lib/.libs/allocators_mmap.o lib/.libs/misc.o lib/.libs/int128.o lib/.libs/thread_exec.o lib/.libs/jsoncpp.o lib/.libs/time.o lib/.libs/generator_manager.o   -lpthread -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,libjellyfish-2.0.so.2 -o .libs/libjellyfish-2.0.so.2.0.0
libtool: link: (cd ".libs" && rm -f "libjellyfish-2.0.so.2" && ln -s "libjellyfish-2.0.so.2.0.0" "libjellyfish-2.0.so.2")
libtool: link: (cd ".libs" && rm -f "libjellyfish-2.0.so" && ln -s "libjellyfish-2.0.so.2.0.0" "libjellyfish-2.0.so")
libtool: link: ar cr .libs/libjellyfish-2.0.a  lib/rectangular_binary_matrix.o lib/mer_dna.o lib/storage.o lib/allocators_mmap.o lib/misc.o lib/int128.o lib/thread_exec.o lib/jsoncpp.o lib/time.o lib/generator_manager.o
libtool: link: ranlib .libs/libjellyfish-2.0.a
libtool: link: ( cd ".libs" && rm -f "libjellyfish-2.0.la" && ln -s "../libjellyfish-2.0.la" "libjellyfish-2.0.la" )
/bin/bash ./libtool  --tag=CXX   --mode=link g++  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts  -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf   -Wl,-z,relro -Wl,-z,now -lpthread -o bin/jellyfish sub_commands/jellyfish.o sub_commands/count_main.o sub_commands/info_main.o sub_commands/dump_main.o sub_commands/histo_main.o sub_commands/stats_main.o sub_commands/merge_main.o sub_commands/bc_main.o sub_commands/query_main.o sub_commands/cite_main.o sub_commands/mem_main.o jellyfish/merge_files.o libjellyfish-2.0.la  
libtool: link: g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/jellyfish sub_commands/jellyfish.o sub_commands/count_main.o sub_commands/info_main.o sub_commands/dump_main.o sub_commands/histo_main.o sub_commands/stats_main.o sub_commands/merge_main.o sub_commands/bc_main.o sub_commands/query_main.o sub_commands/cite_main.o sub_commands/mem_main.o jellyfish/merge_files.o  -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE -I./include -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo `test -f 'swig/perl5/swig_wrap.cpp' || echo './'`swig/perl5/swig_wrap.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c swig/perl5/swig_wrap.cpp  -fPIC -DPIC -o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c swig/perl5/swig_wrap.cpp -o swig/perl5/swig_perl5_jellyfish_la-swig_wrap.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=link g++  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo  libjellyfish-2.0.la 
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o   -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/.libs -lpthread ./.libs/libjellyfish-2.0.so -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: link: (cd "swig/perl5/.libs" && rm -f "jellyfish.so.0" && ln -s "jellyfish.so.0.0.0" "jellyfish.so.0")
libtool: link: (cd "swig/perl5/.libs" && rm -f "jellyfish.so" && ln -s "jellyfish.so.0.0.0" "jellyfish.so")
libtool: link: ar cr swig/perl5/.libs/jellyfish.a  swig/perl5/swig_perl5_jellyfish_la-swig_wrap.o
libtool: link: ranlib swig/perl5/.libs/jellyfish.a
libtool: link: ( cd "swig/perl5/.libs" && rm -f "jellyfish.la" && ln -s "../jellyfish.la" "jellyfish.la" )
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -I/usr/include/python3.11 -I./include -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo `test -f 'swig/python/swig_wrap.cpp' || echo './'`swig/python/swig_wrap.cpp
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I/usr/include/python3.11 -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c swig/python/swig_wrap.cpp  -fPIC -DPIC -o swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I/usr/include/python3.11 -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c swig/python/swig_wrap.cpp -o swig/python/swig_python__dna_jellyfish_la-swig_wrap.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=link g++  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo  libjellyfish-2.0.la 
libtool: link: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o   -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/.libs -lpthread ./.libs/libjellyfish-2.0.so -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: link: (cd "swig/python/.libs" && rm -f "_dna_jellyfish.so.0" && ln -s "_dna_jellyfish.so.0.0.0" "_dna_jellyfish.so.0")
libtool: link: (cd "swig/python/.libs" && rm -f "_dna_jellyfish.so" && ln -s "_dna_jellyfish.so.0.0.0" "_dna_jellyfish.so")
libtool: link: ar cr swig/python/.libs/_dna_jellyfish.a  swig/python/swig_python__dna_jellyfish_la-swig_wrap.o
libtool: link: ranlib swig/python/.libs/_dna_jellyfish.a
libtool: link: ( cd "swig/python/.libs" && rm -f "_dna_jellyfish.la" && ln -s "../_dna_jellyfish.la" "_dna_jellyfish.la" )
/usr/bin/python3 -c 'import py_compile, sys; py_compile.compile(sys.argv[1], sys.argv[2])' swig/python/dna_jellyfish.py swig/python/__init__.pyc
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/generate_sequence.o jellyfish/generate_sequence.cc
In file included from /usr/include/c++/13/vector:72,
                 from jellyfish/generate_sequence.cc:10:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘void generate_sequence_args::parse(int, char**)’ at ./jellyfish/generate_sequence_cmdline.hpp:404:27:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/mersenne.o jellyfish/mersenne.cpp
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/backtrace.o jellyfish/backtrace.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/dbg.o jellyfish/dbg.cc
/bin/bash ./libtool  --tag=CXX   --mode=link g++  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts  -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf  -Wl,-z,relro -Wl,-z,now -lpthread -o bin/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o jellyfish/backtrace.o jellyfish/dbg.o libjellyfish-2.0.la  
libtool: link: g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o jellyfish/backtrace.o jellyfish/dbg.o  -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_main.o `test -f 'unit_tests/test_main.cc' || echo './'`unit_tests/test_main.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_misc.o `test -f 'unit_tests/test_misc.cc' || echo './'`unit_tests/test_misc.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_offsets_key_value.o `test -f 'unit_tests/test_offsets_key_value.cc' || echo './'`unit_tests/test_offsets_key_value.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_simple_circular_buffer.o `test -f 'unit_tests/test_simple_circular_buffer.cc' || echo './'`unit_tests/test_simple_circular_buffer.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_rectangular_binary_matrix.o `test -f 'unit_tests/test_rectangular_binary_matrix.cc' || echo './'`unit_tests/test_rectangular_binary_matrix.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_dna.o `test -f 'unit_tests/test_mer_dna.cc' || echo './'`unit_tests/test_mer_dna.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_large_hash_array.o `test -f 'unit_tests/test_large_hash_array.cc' || echo './'`unit_tests/test_large_hash_array.cc
In file included from /usr/include/c++/13/map:62,
                 from unit_tests/test_large_hash_array.cc:5:
/usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>&>, std::tuple<>}; _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Val = std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]’:
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/map:63:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]’,
    inlined from ‘{anonymous}::arrays_ptr {anonymous}::fill_array(size_t, size_t, int, int, int)’ at unit_tests/test_large_hash_array.cc:163:12:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]’,
    inlined from ‘virtual void {anonymous}::HashArray_Collisions_Test::TestBody()’ at unit_tests/test_large_hash_array.cc:130:18:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]’,
    inlined from ‘virtual void {anonymous}::HashArray_Collisions_Test::TestBody()’ at unit_tests/test_large_hash_array.cc:138:7:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]’,
    inlined from ‘virtual void {anonymous}::Hash_Update_Test::TestBody()’ at unit_tests/test_large_hash_array.cc:326:5:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o `test -f 'unit_tests/test_mer_overlap_sequence_parser.cc' || echo './'`unit_tests/test_mer_overlap_sequence_parser.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_file_header.o `test -f 'unit_tests/test_file_header.cc' || echo './'`unit_tests/test_file_header.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_iterator.o `test -f 'unit_tests/test_mer_iterator.cc' || echo './'`unit_tests/test_mer_iterator.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_hash_counter.o `test -f 'unit_tests/test_hash_counter.cc' || echo './'`unit_tests/test_hash_counter.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_heap.o `test -f 'unit_tests/test_mer_heap.cc' || echo './'`unit_tests/test_mer_heap.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_stream_iterator.o `test -f 'unit_tests/test_stream_iterator.cc' || echo './'`unit_tests/test_stream_iterator.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_token_ring.o `test -f 'unit_tests/test_token_ring.cc' || echo './'`unit_tests/test_token_ring.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_text_dumper.o `test -f 'unit_tests/test_text_dumper.cc' || echo './'`unit_tests/test_text_dumper.cc
In file included from /usr/include/c++/13/map:62,
                 from unit_tests/test_text_dumper.cc:1:
/usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>&>, std::tuple<>}; _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Val = std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]’:
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
 2458 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/map:63:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]’,
    inlined from ‘virtual void {anonymous}::hash_adder::start(int)’ at unit_tests/test_text_dumper.cc:38:17:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>; _Tp = long long unsigned int; _Compare = std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >; _Alloc = std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >]’,
    inlined from ‘void {anonymous}::hash_adder::maps_consolidate()’ at unit_tests/test_text_dumper.cc:49:28,
    inlined from ‘virtual void {anonymous}::TextDumper_Random_Test::TestBody()’ at unit_tests/test_text_dumper.cc:93:25:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int>, std::_Select1st<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> >, std::less<jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0> >, std::allocator<std::pair<const jellyfish::mer_dna_ns::mer_base_static<long long unsigned int, 0>, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
  513 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  514 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  515 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_dumpers.o `test -f 'unit_tests/test_dumpers.cc' || echo './'`unit_tests/test_dumpers.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mapped_file.o `test -f 'unit_tests/test_mapped_file.cc' || echo './'`unit_tests/test_mapped_file.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_int128.o `test -f 'unit_tests/test_int128.cc' || echo './'`unit_tests/test_int128.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o `test -f 'unit_tests/test_mer_dna_bloom_counter.cc' || echo './'`unit_tests/test_mer_dna_bloom_counter.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_whole_sequence_parser.o `test -f 'unit_tests/test_whole_sequence_parser.cc' || echo './'`unit_tests/test_whole_sequence_parser.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_allocators_mmap.o `test -f 'unit_tests/test_allocators_mmap.cc' || echo './'`unit_tests/test_allocators_mmap.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_cooperative_pool2.o `test -f 'unit_tests/test_cooperative_pool2.cc' || echo './'`unit_tests/test_cooperative_pool2.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_generator_manager.o `test -f 'unit_tests/test_generator_manager.cc' || echo './'`unit_tests/test_generator_manager.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_atomic_bits_array.o `test -f 'unit_tests/test_atomic_bits_array.cc' || echo './'`unit_tests/test_atomic_bits_array.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/bin_test_all-test_stdio_filebuf.o `test -f 'unit_tests/test_stdio_filebuf.cc' || echo './'`unit_tests/test_stdio_filebuf.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -DJSON_IS_AMALGAMATION=1 -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/bin_test_all-backtrace.o `test -f 'jellyfish/backtrace.cc' || echo './'`jellyfish/backtrace.cc
/bin/bash ./libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o unit_tests/gtest/src/libgtest_la-gtest-all.lo `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c unit_tests/gtest/src/gtest-all.cc  -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c unit_tests/gtest/src/gtest-all.cc -o unit_tests/gtest/src/libgtest_la-gtest-all.o >/dev/null 2>&1
/bin/bash ./libtool  --tag=CXX   --mode=link g++ -I./unit_tests -I./unit_tests/gtest -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts  -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf  -Wl,-z,relro -Wl,-z,now -lpthread -o libgtest.la  unit_tests/gtest/src/libgtest_la-gtest-all.lo  
libtool: link: ar cr .libs/libgtest.a unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o 
libtool: link: ranlib .libs/libgtest.a
libtool: link: ( cd ".libs" && rm -f "libgtest.la" && ln -s "../libgtest.la" "libgtest.la" )
/bin/bash ./libtool  --tag=CXX   --mode=link g++  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts  -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf  -Wl,-z,relro -Wl,-z,now -lpthread -o bin/test_all unit_tests/bin_test_all-test_main.o unit_tests/bin_test_all-test_misc.o unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_rectangular_binary_matrix.o unit_tests/bin_test_all-test_mer_dna.o unit_tests/bin_test_all-test_large_hash_array.o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o unit_tests/bin_test_all-test_file_header.o unit_tests/bin_test_all-test_mer_iterator.o unit_tests/bin_test_all-test_hash_counter.o unit_tests/bin_test_all-test_mer_heap.o unit_tests/bin_test_all-test_stream_iterator.o unit_tests/bin_test_all-test_token_ring.o unit_tests/bin_test_all-test_text_dumper.o unit_tests/bin_test_all-test_dumpers.o unit_tests/bin_test_all-test_mapped_file.o unit_tests/bin_test_all-test_int128.o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o unit_tests/bin_test_all-test_whole_sequence_parser.o unit_tests/bin_test_all-test_allocators_mmap.o unit_tests/bin_test_all-test_cooperative_pool2.o unit_tests/bin_test_all-test_generator_manager.o unit_tests/bin_test_all-test_atomic_bits_array.o unit_tests/bin_test_all-test_stdio_filebuf.o jellyfish/bin_test_all-backtrace.o libgtest.la libjellyfish-2.0.la  
libtool: link: g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -I./unit_tests/gtest/include -I./unit_tests -I./include -Wno-unused-variable -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/test_all unit_tests/bin_test_all-test_main.o unit_tests/bin_test_all-test_misc.o unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_rectangular_binary_matrix.o unit_tests/bin_test_all-test_mer_dna.o unit_tests/bin_test_all-test_large_hash_array.o unit_tests/bin_test_all-test_mer_overlap_sequence_parser.o unit_tests/bin_test_all-test_file_header.o unit_tests/bin_test_all-test_mer_iterator.o unit_tests/bin_test_all-test_hash_counter.o unit_tests/bin_test_all-test_mer_heap.o unit_tests/bin_test_all-test_stream_iterator.o unit_tests/bin_test_all-test_token_ring.o unit_tests/bin_test_all-test_text_dumper.o unit_tests/bin_test_all-test_dumpers.o unit_tests/bin_test_all-test_mapped_file.o unit_tests/bin_test_all-test_int128.o unit_tests/bin_test_all-test_mer_dna_bloom_counter.o unit_tests/bin_test_all-test_whole_sequence_parser.o unit_tests/bin_test_all-test_allocators_mmap.o unit_tests/bin_test_all-test_cooperative_pool2.o unit_tests/bin_test_all-test_generator_manager.o unit_tests/bin_test_all-test_atomic_bits_array.o unit_tests/bin_test_all-test_stdio_filebuf.o jellyfish/bin_test_all-backtrace.o  -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf ./.libs/libgtest.a -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -c -o jellyfish/fastq2sam.o jellyfish/fastq2sam.cc
/bin/bash ./libtool  --tag=CXX   --mode=link g++  -I/<<PKGBUILDDIR>>/debian/tmp/usr/include  -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -pthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts  -R/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf  -Wl,-z,relro -Wl,-z,now -lpthread -o bin/fastq2sam jellyfish/fastq2sam.o libjellyfish-2.0.la  
libtool: link: g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/fastq2sam jellyfish/fastq2sam.o  -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -lhts -lpthread ./.libs/libjellyfish-2.0.so -pthread -Wl,-rpath -Wl,/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_install -- install-data
	make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no install-data
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make  install-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[4]: Entering directory '/<<PKGBUILDDIR>>'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
  /bin/bash ./libtool   --mode=install /usr/bin/install -c bin/jellyfish '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: 'libjellyfish-2.0.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c bin/.libs/jellyfish /<<PKGBUILDDIR>>/debian/tmp/usr/bin/jellyfish
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
 /usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool"  --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o   -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
 /usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool"  --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o   -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
 /usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
 /usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool"  --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o   -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
 /usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool"  --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o   -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
 /usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build --sourcedirectory=swig/perl5
	cd swig/perl5 && make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/swig/perl5'
Running Mkbootstrap for jellyfish ()
g++ -c   -std=c++0x -I/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"0.0.1\" -DXS_VERSION=\"0.0.1\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE"   swig_wrap.cpp
chmod 644 "jellyfish.bs"
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- jellyfish.bs blib/arch/auto/jellyfish/jellyfish.bs 644
rm -f blib/arch/auto/jellyfish/jellyfish.so
arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lpthread  -shared -L/usr/local/lib -fstack-protector-strong  swig_wrap.o  -o blib/arch/auto/jellyfish/jellyfish.so  \
   -lpthread   \
  
chmod 755 blib/arch/auto/jellyfish/jellyfish.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>/swig/perl5'
dh_auto_build --sourcedirectory=swig/python --buildsystem=pybuild
I: pybuild base:305: /usr/bin/python3 setup.py build build_ext -L/<<PKGBUILDDIR>>/.libs
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "Test data are to big for 32bit architectures thus no testing is done"
Test data are to big for 32bit architectures thus no testing is done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
chrpath --delete bin/.libs/*
dh_auto_install -- install-data
	make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no install-data
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make  install-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[4]: Entering directory '/<<PKGBUILDDIR>>'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
  /bin/bash ./libtool   --mode=install /usr/bin/install -c bin/jellyfish '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: 'libjellyfish-2.0.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c bin/.libs/jellyfish /<<PKGBUILDDIR>>/debian/tmp/usr/bin/jellyfish
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
 /usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool"  --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o   -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
 /usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool"  --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o   -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
 /usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<<PKGBUILDDIR>>/debian/tmp/usr/include/jellyfish-2.3.1/jellyfish'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
 /usr/bin/install -c -m 644 'doc/jellyfish.man' '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/jellyfish.1'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   libjellyfish-2.0.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   swig/perl5/jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
libtool: warning: relinking 'swig/perl5/jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool"  --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -Wno-error -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.36.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o   -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.la
libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0/jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.36.0'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /usr/bin/install -c swig/perl5/jellyfish.pm '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/perl/5.36.0'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
 /usr/bin/install -c -m 644 jellyfish-2.0.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   swig/python/_dna_jellyfish.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
libtool: warning: relinking 'swig/python/_dna_jellyfish.la'
libtool: install: (cd /<<PKGBUILDDIR>>; /bin/bash "/<<PKGBUILDDIR>>/libtool"  --tag CXX --mode=relink g++ -I/<<PKGBUILDDIR>>/debian/tmp/usr/include -Werror -std=c++11 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wno-nonnull -module -Wl,-z,relro -Wl,-z,now -lpthread -o swig/python/_dna_jellyfish.la -rpath /usr/lib/python3.11/site-packages/dna_jellyfish swig/python/swig_python__dna_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<<PKGBUILDDIR>>/debian/tmp)
libtool: relink: g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o  swig/python/.libs/swig_python__dna_jellyfish_la-swig_wrap.o   -lpthread -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ljellyfish-2.0 -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o  -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now   -Wl,-soname -Wl,_dna_jellyfish.so.0 -o swig/python/.libs/_dna_jellyfish.so.0.0.0
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.so.0.0.0T /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0 || { rm -f _dna_jellyfish.so.0 && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish && { ln -s -f _dna_jellyfish.so.0.0.0 _dna_jellyfish.so || { rm -f _dna_jellyfish.so && ln -s _dna_jellyfish.so.0.0.0 _dna_jellyfish.so; }; })
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.la
libtool: install: /usr/bin/install -c swig/python/.libs/_dna_jellyfish.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish/_dna_jellyfish.a
libtool: warning: remember to run 'libtool --finish /usr/lib/python3.11/site-packages/dna_jellyfish'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
 /usr/bin/install -c swig/python/__init__.pyc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/site-packages/dna_jellyfish'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_install --sourcedirectory=swig/python --buildsystem=pybuild
I: pybuild base:305: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-dna-jellyfish 
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
dh_auto_install --sourcedirectory=swig/perl5
	cd swig/perl5 && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[2]: Entering directory '/<<PKGBUILDDIR>>/swig/perl5'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- jellyfish.bs blib/arch/auto/jellyfish/jellyfish.bs 644
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/jellyfish.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>/swig/perl5'
ls -l debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
-r-xr-xr-x 1 buildd buildd 1081044 Jan 21 17:37 debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/jellyfish.so
if [ ! -e debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so ] ; then sleep 1; fi
chmod +w debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
chrpath --delete debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
dh_install
d-shlibmove --commit \
	    --multiarch \
	    --devunversioned \
	    --movedev "debian/tmp/usr/include/jellyfish*/jellyfish/*.hpp" usr/include/jellyfish \
	    --movedev "debian/tmp/usr/include/jellyfish*/jellyfish/*.h" usr/include/jellyfish \
	    --movedev config.h usr/include/jellyfish \
		debian/tmp/usr/lib/*/libjellyfish-*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf || true
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2 debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0 debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf
PKGDEV=libjellyfish-2.0-dev
PKGSHL=libjellyfish-2.0-2
install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish
mv debian/tmp/usr/include/jellyfish*/jellyfish/*.hpp debian/libjellyfish-2.0-dev/usr/include/jellyfish
install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish
mv debian/tmp/usr/include/jellyfish*/jellyfish/*.h debian/libjellyfish-2.0-dev/usr/include/jellyfish
install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish
mv config.h debian/libjellyfish-2.0-dev/usr/include/jellyfish
sed -i "/dependency_libs/ s/'.*'/''/" ./debian/libjellyfish-2.0-dev/usr/lib/arm-linux-gnueabihf/*.la
chrpath --delete debian/*/usr/lib/python*/dist-packages/_dna_jellyfish*.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a
   debian/rules execute_after_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Fix PACKAGE_NAME defined in config.h colliding with potential reverse
# dependencies autotools invocations, per lintian warning.
rm -vf debian/libjellyfish-2.0-dev/usr/include/jellyfish/config.h
removed 'debian/libjellyfish-2.0-dev/usr/include/jellyfish/config.h'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installexamples -a
   dh_installman -a
   dh_python3 -a
   dh_lintian -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   debian/rules override_dh_missing
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Python files are just installed
rm -rf debian/tmp/usr/lib/python3/dist-packages
# Necessary Perl files are just installed
rm -rf debian/tmp/usr/lib/perl/5.*
dh_missing
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/jellyfish/usr/lib/jellyfish/bin/test_all contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/jellyfish/usr/lib/jellyfish/bin/generate_sequence contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/jellyfish/usr/bin/jellyfish contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/jellyfish/usr/lib/jellyfish/bin/test_all debian/jellyfish/usr/lib/jellyfish/bin/generate_sequence debian/jellyfish/usr/lib/jellyfish/bin/fastq2sam debian/jellyfish/usr/bin/jellyfish were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libjellyfish-2.0-2/usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0 found in none of the libraries
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'jellyfish' in '../jellyfish_2.3.1-2+b4_armhf.deb'.
dpkg-deb: building package 'libjellyfish-2.0-2-dbgsym' in '../libjellyfish-2.0-2-dbgsym_2.3.1-2+b4_armhf.deb'.
dpkg-deb: building package 'python3-dna-jellyfish-dbgsym' in '../python3-dna-jellyfish-dbgsym_2.3.1-2+b4_armhf.deb'.
dpkg-deb: building package 'libjellyfish-perl' in '../libjellyfish-perl_2.3.1-2+b4_armhf.deb'.
dpkg-deb: building package 'libjellyfish-2.0-dev' in '../libjellyfish-2.0-dev_2.3.1-2+b4_armhf.deb'.
dpkg-deb: building package 'libjellyfish-perl-dbgsym' in '../libjellyfish-perl-dbgsym_2.3.1-2+b4_armhf.deb'.
dpkg-deb: building package 'python3-dna-jellyfish' in '../python3-dna-jellyfish_2.3.1-2+b4_armhf.deb'.
dpkg-deb: building package 'jellyfish-dbgsym' in '../jellyfish-dbgsym_2.3.1-2+b4_armhf.deb'.
dpkg-deb: building package 'libjellyfish-2.0-2' in '../libjellyfish-2.0-2_2.3.1-2+b4_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../jellyfish_2.3.1-2+b4_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../jellyfish_2.3.1-2+b4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-01-21T17:38:13Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


jellyfish_2.3.1-2+b4_armhf.changes:
-----------------------------------

Format: 1.8
Date: Sun, 21 Jan 2024 17:34:09 +0000
Source: jellyfish (2.3.1-2)
Binary: jellyfish jellyfish-dbgsym libjellyfish-2.0-2 libjellyfish-2.0-2-dbgsym libjellyfish-2.0-dev libjellyfish-perl libjellyfish-perl-dbgsym python3-dna-jellyfish python3-dna-jellyfish-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 2.3.1-2+b4
Distribution: trixie-staging
Urgency: low
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Raspbian pi5 test autobuilder <root@raspbian.org>
Description:
 jellyfish  - count k-mers in DNA sequences
 libjellyfish-2.0-2 - count k-mers in DNA sequences (dynamic library of jellyfish)
 libjellyfish-2.0-dev - count k-mers in DNA sequences (development files of jellyfish)
 libjellyfish-perl - count k-mers in DNA sequences (Perl bindings of jellyfish)
 python3-dna-jellyfish - count k-mers in DNA sequences (Python bindings of jellyfish)
Changes:
 jellyfish (2.3.1-2+b4) trixie-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
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 84fecb582216128d871c2cfcbef7caf7 54212 python optional python3-dna-jellyfish_2.3.1-2+b4_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: jellyfish (2.3.1-2)
Binary: jellyfish jellyfish-dbgsym libjellyfish-2.0-2 libjellyfish-2.0-2-dbgsym libjellyfish-2.0-dev libjellyfish-perl libjellyfish-perl-dbgsym python3-dna-jellyfish python3-dna-jellyfish-dbgsym
Architecture: armhf
Version: 2.3.1-2+b4
Binary-Only-Changes:
 jellyfish (2.3.1-2+b4) trixie-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
 .
  -- Raspbian pi5 test autobuilder <root@raspbian.org>  Sun, 21 Jan 2024 17:34:09 +0000
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sun, 21 Jan 2024 17:38:12 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
 adduser (= 3.137),
 apt (= 2.7.6),
 autoconf (= 2.71-3),
 autoconf-archive (= 20220903-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-14),
 autotools-dev (= 20220109.1),
 base-files (= 13+rpi1),
 base-passwd (= 3.6.3),
 bash (= 5.2.21-2),
 bc (= 1.07.1-3),
 binutils (= 2.41-6+rpi1),
 binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
 binutils-common (= 2.41-6+rpi1),
 bsdextrautils (= 2.39.3-6),
 bsdutils (= 1:2.39.3-6),
 build-essential (= 12.10),
 bzip2 (= 1.0.8-5+b2),
 ca-certificates (= 20230311),
 chrpath (= 0.16-2),
 coreutils (= 9.1-1),
 cpp (= 4:13.2.0-1+rpi1),
 cpp-12 (= 12.3.0-13+rpi1),
 cpp-13 (= 13.2.0-7+rpi1),
 d-shlibs (= 0.105),
 dash (= 0.5.12-6),
 debconf (= 1.5.82),
 debhelper (= 13.11.9),
 debianutils (= 5.14),
 dh-autoreconf (= 20),
 dh-python (= 6.20231223),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.10-1),
 dirmngr (= 2.2.40-1.1),
 dos2unix (= 7.5.1-1),
 dpkg (= 1.22.1+rpi1),
 dpkg-dev (= 1.22.1+rpi1),
 dwz (= 0.15-1),
 file (= 1:5.45-2),
 findutils (= 4.9.0-5),
 g++ (= 4:13.2.0-1+rpi1),
 g++-13 (= 13.2.0-7+rpi1),
 gcc (= 4:13.2.0-1+rpi1),
 gcc-12 (= 12.3.0-13+rpi1),
 gcc-12-base (= 12.3.0-13+rpi1),
 gcc-13 (= 13.2.0-7+rpi1),
 gcc-13-base (= 13.2.0-7+rpi1),
 gettext (= 0.21-14),
 gettext-base (= 0.21-14),
 gnupg (= 2.2.40-1.1),
 gnupg-l10n (= 2.2.40-1.1),
 gnupg-utils (= 2.2.40-1.1),
 gpg (= 2.2.40-1.1),
 gpg-agent (= 2.2.40-1.1),
 gpg-wks-client (= 2.2.40-1.1),
 gpg-wks-server (= 2.2.40-1.1),
 gpgconf (= 2.2.40-1.1),
 gpgsm (= 2.2.40-1.1),
 gpgv (= 2.2.40-1.1),
 grep (= 3.11-3),
 groff-base (= 1.23.0-3),
 gzip (= 1.12-1),
 hostname (= 3.23+nmu1),
 init-system-helpers (= 1.66),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.1-3),
 libapt-pkg6.0 (= 2.7.6),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 13.2.0-7+rpi1),
 libassuan0 (= 2.5.6-1),
 libatomic1 (= 13.2.0-7+rpi1),
 libattr1 (= 1:2.5.1-4),
 libaudit-common (= 1:3.1.2-1),
 libaudit1 (= 1:3.1.2-1),
 libbinutils (= 2.41-6+rpi1),
 libblkid1 (= 2.39.3-6),
 libbrotli1 (= 1.1.0-2),
 libbsd0 (= 0.11.8-1),
 libbz2-1.0 (= 1.0.8-5+b2),
 libc-bin (= 2.37-12+rpi2),
 libc-dev-bin (= 2.37-12+rpi2),
 libc6 (= 2.37-12+rpi2),
 libc6-dev (= 2.37-12+rpi2),
 libcap-ng0 (= 0.8.3-3),
 libcap2 (= 1:2.66-4),
 libcc1-0 (= 13.2.0-7+rpi1),
 libcom-err2 (= 1.47.0-2),
 libcrypt-dev (= 1:4.4.36-2),
 libcrypt1 (= 1:4.4.36-2),
 libctf-nobfd0 (= 2.41-6+rpi1),
 libctf0 (= 2.41-6+rpi1),
 libcurl3-gnutls (= 8.5.0-2+rpi1),
 libcurl4-gnutls-dev (= 8.5.0-2+rpi1),
 libdb5.3 (= 5.3.28+dfsg2-4),
 libdebconfclient0 (= 0.271),
 libdebhelper-perl (= 13.11.9),
 libdeflate-dev (= 1.18-1),
 libdeflate0 (= 1.18-1),
 libdpkg-perl (= 1.22.1+rpi1),
 libedit2 (= 3.1-20230828-1),
 libelf1 (= 0.188-2.1+rpi1),
 libexpat1 (= 2.5.0-2),
 libexpat1-dev (= 2.5.0-2),
 libffi8 (= 3.4.4-2),
 libfile-find-rule-perl (= 0.34-3),
 libfile-stripnondeterminism-perl (= 1.13.1-1),
 libgcc-12-dev (= 12.3.0-13+rpi1),
 libgcc-13-dev (= 13.2.0-7+rpi1),
 libgcc-s1 (= 13.2.0-7+rpi1),
 libgcrypt20 (= 1.10.3-2),
 libgdbm-compat4 (= 1.23-5),
 libgdbm6 (= 1.23-5),
 libgmp10 (= 2:6.3.0+dfsg-2),
 libgnutls30 (= 3.8.2-1),
 libgomp1 (= 13.2.0-7+rpi1),
 libgpg-error0 (= 1.47-3),
 libgssapi-krb5-2 (= 1.20.1-5),
 libhogweed6 (= 3.9.1-2),
 libhts-dev (= 1.18+ds-1),
 libhts3 (= 1.18+ds-1),
 libhtscodecs2 (= 1.6.0-1),
 libicu72 (= 72.1-4),
 libidn2-0 (= 2.3.4-1),
 libisl23 (= 0.26-3),
 libjansson4 (= 2.14-2),
 libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
 libjs-sphinxdoc (= 7.2.6-3),
 libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
 libk5crypto3 (= 1.20.1-5),
 libkeyutils1 (= 1.6.3-2),
 libkrb5-3 (= 1.20.1-5),
 libkrb5support0 (= 1.20.1-5),
 libksba8 (= 1.6.5-2),
 libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
 liblz4-1 (= 1.9.4-1+rpi1+b1),
 liblzma-dev (= 5.4.5-0.3),
 liblzma5 (= 5.4.5-0.3),
 libmagic-mgc (= 1:5.45-2),
 libmagic1 (= 1:5.45-2),
 libmd0 (= 1.1.0-1),
 libmount1 (= 2.39.3-6),
 libmpc3 (= 1.3.1-1),
 libmpfr6 (= 4.2.1-1),
 libncurses6 (= 6.4+20231209-1),
 libncursesw6 (= 6.4+20231209-1),
 libnettle8 (= 3.9.1-2),
 libnghttp2-14 (= 1.58.0-1),
 libnpth0 (= 1.6-3),
 libnsl-dev (= 1.3.0-3),
 libnsl2 (= 1.3.0-3),
 libnumber-compare-perl (= 0.03-3),
 libp11-kit0 (= 0.25.3-2),
 libpam-modules (= 1.5.2-9.1),
 libpam-modules-bin (= 1.5.2-9.1),
 libpam-runtime (= 1.5.2-9.1),
 libpam0g (= 1.5.2-9.1),
 libpcre2-8-0 (= 10.42-4),
 libperl5.36 (= 5.36.0-10),
 libpipeline1 (= 1.5.7-1),
 libpkgconf3 (= 1.8.1-1),
 libproc2-0 (= 2:4.0.4-2),
 libpsl5 (= 0.21.2-1+b1),
 libpython3-all-dev (= 3.11.4-5),
 libpython3-dev (= 3.11.4-5),
 libpython3-stdlib (= 3.11.4-5),
 libpython3.11 (= 3.11.7-2),
 libpython3.11-dev (= 3.11.7-2),
 libpython3.11-minimal (= 3.11.7-2),
 libpython3.11-stdlib (= 3.11.7-2),
 libreadline8 (= 8.2-3),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libruby (= 1:3.1),
 libruby3.1 (= 3.1.2-8),
 libsasl2-2 (= 2.1.28+dfsg1-4),
 libsasl2-modules-db (= 2.1.28+dfsg1-4),
 libseccomp2 (= 2.5.4-2+rpi1),
 libselinux1 (= 3.5-1),
 libsemanage-common (= 3.5-1),
 libsemanage2 (= 3.5-1),
 libsepol2 (= 3.5-2),
 libsframe1 (= 2.41-6+rpi1),
 libsmartcols1 (= 2.39.3-6),
 libsqlite3-0 (= 3.44.2-1),
 libssh2-1 (= 1.11.0-4),
 libssl3 (= 3.1.4-2),
 libstdc++-13-dev (= 13.2.0-7+rpi1),
 libstdc++6 (= 13.2.0-7+rpi1),
 libsub-override-perl (= 0.10-1),
 libsystemd0 (= 254.5-1+rpi1),
 libtasn1-6 (= 4.19.0-3),
 libtext-glob-perl (= 0.11-3),
 libtinfo6 (= 6.4+20231209-1),
 libtirpc-common (= 1.3.4+ds-1),
 libtirpc-dev (= 1.3.4+ds-1),
 libtirpc3 (= 1.3.4+ds-1),
 libtool (= 2.4.7-7),
 libubsan1 (= 13.2.0-7+rpi1),
 libuchardet0 (= 0.0.8-1),
 libudev1 (= 254.5-1+rpi1),
 libunistring5 (= 1.1-2),
 libuuid1 (= 2.39.3-6),
 libxml2 (= 2.9.14+dfsg-1.3),
 libxxhash0 (= 0.8.2-2),
 libyaml-0-2 (= 0.2.5-1),
 libzstd1 (= 1.5.5+dfsg2-2),
 linux-libc-dev (= 6.5.6-1+rpi1),
 login (= 1:4.13+dfsg1-3),
 lsb-base (= 11.6+rpi1),
 m4 (= 1.4.19-4),
 make (= 4.3-4.1),
 man-db (= 2.12.0-3),
 mawk (= 1.3.4.20231126-1),
 media-types (= 10.1.0),
 ncurses-base (= 6.4+20231209-1),
 ncurses-bin (= 6.4+20231209-1),
 netbase (= 6.4),
 openssl (= 3.1.4-2),
 passwd (= 1:4.13+dfsg1-3),
 patch (= 2.7.6-7),
 perl (= 5.36.0-10),
 perl-base (= 5.36.0-10),
 perl-modules-5.36 (= 5.36.0-10),
 pinentry-curses (= 1.2.1-3),
 pkg-config (= 1.8.1-1),
 pkgconf (= 1.8.1-1),
 pkgconf-bin (= 1.8.1-1),
 po-debconf (= 1.0.21+nmu1),
 procps (= 2:4.0.4-2),
 python3 (= 3.11.4-5),
 python3-all (= 3.11.4-5),
 python3-all-dev (= 3.11.4-5),
 python3-dev (= 3.11.4-5),
 python3-distutils (= 3.11.5-1),
 python3-lib2to3 (= 3.11.5-1),
 python3-minimal (= 3.11.4-5),
 python3-pkg-resources (= 68.1.2-2),
 python3-setuptools (= 68.1.2-2),
 python3.11 (= 3.11.7-2),
 python3.11-dev (= 3.11.7-2),
 python3.11-minimal (= 3.11.7-2),
 rake (= 13.0.6-3),
 raspbian-archive-keyring (= 20120528.2),
 readline-common (= 8.2-3),
 rpcsvc-proto (= 1.4.3-1),
 ruby (= 1:3.1),
 ruby-net-telnet (= 0.2.0-1),
 ruby-rubygems (= 3.4.20-1),
 ruby-sdbm (= 1.0.0-5+rpi1),
 ruby-webrick (= 1.8.1-1),
 ruby-xmlrpc (= 0.3.2-2),
 ruby3.1 (= 3.1.2-8),
 rubygems-integration (= 1.18),
 samtools (= 1.19-1),
 sed (= 4.9-1),
 sensible-utils (= 0.0.20),
 swig (= 4.1.0-0.3),
 swig4.0 (= 4.1.0-0.3),
 sysvinit-utils (= 3.08-5),
 tar (= 1.34+dfsg-1.3),
 time (= 1.9-0.2),
 tzdata (= 2023c-11),
 usr-is-merged (= 38),
 usrmerge (= 38),
 util-linux (= 2.39.3-6),
 xz-utils (= 5.4.5-0.3),
 yaggo (= 1.5.11-1),
 zlib1g (= 1:1.3.dfsg-3),
 zlib1g-dev (= 1:1.3.dfsg-3)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 SOURCE_DATE_EPOCH="1705858449"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


jellyfish-dbgsym_2.3.1-2+b4_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 6420068 bytes: control archive=760 bytes.
     518 bytes,    12 lines      control
     513 bytes,     5 lines      md5sums
 Package: jellyfish-dbgsym
 Source: jellyfish (2.3.1-2)
 Version: 2.3.1-2+b4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 6873
 Depends: jellyfish (= 2.3.1-2+b4)
 Section: debug
 Priority: optional
 Description: debug symbols for jellyfish
 Build-Ids: 1b2cadc2a0ad0884ad29b0d88eb834225084ac9b 3f6e7d649daf5081626ceceffb64a7cf89d40082 71c397f9074a62270890a153bd86d5bd8d9252c4 a6eedb6700b9a54e6c33017190852bf8a5c88752

drwxr-xr-x root/root         0 2024-01-21 17:34 ./
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/1b/
-rw-r--r-- root/root     61488 2024-01-21 17:34 ./usr/lib/debug/.build-id/1b/2cadc2a0ad0884ad29b0d88eb834225084ac9b.debug
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/3f/
-rw-r--r-- root/root     78172 2024-01-21 17:34 ./usr/lib/debug/.build-id/3f/6e7d649daf5081626ceceffb64a7cf89d40082.debug
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/71/
-rw-r--r-- root/root   5412124 2024-01-21 17:34 ./usr/lib/debug/.build-id/71/c397f9074a62270890a153bd86d5bd8d9252c4.debug
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/a6/
-rw-r--r-- root/root   1382704 2024-01-21 17:34 ./usr/lib/debug/.build-id/a6/eedb6700b9a54e6c33017190852bf8a5c88752.debug
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root     84520 2024-01-21 17:34 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/jellyfish.debug
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-01-21 17:34 ./usr/share/doc/jellyfish-dbgsym -> jellyfish


jellyfish_2.3.1-2+b4_armhf.deb
------------------------------

 new Debian package, version 2.0.
 size 622284 bytes: control archive=1364 bytes.
    1178 bytes,    24 lines      control
     988 bytes,    14 lines      md5sums
 Package: jellyfish
 Source: jellyfish (2.3.1-2)
 Version: 2.3.1-2+b4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1717
 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libhts3 (>= 1.17), libjellyfish-2.0-2 (= 2.3.1-2+b4), libstdc++6 (>= 13.1)
 Section: science
 Priority: optional
 Homepage: https://github.com/gmarcais/Jellyfish
 Description: count k-mers in DNA sequences
  JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
  DNA. A k-mer is a substring of length k, and counting the occurrences
  of all such substrings is a central step in many analyses of DNA
  sequence. JELLYFISH can count k-mers using an order of magnitude less
  memory and an order of magnitude faster than other k-mer counting
  packages by using an efficient encoding of a hash table and by
  exploiting the "compare-and-swap" CPU instruction to increase
  parallelism.
  .
  JELLYFISH is a command-line program that reads FASTA and multi-FASTA
  files containing DNA sequences. It outputs its k-mer counts in an
  binary format, which can be translated into a human-readable text
  format using the "jellyfish dump" command.

drwxr-xr-x root/root         0 2024-01-21 17:34 ./
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/bin/
-rwxr-xr-x root/root    290908 2024-01-21 17:34 ./usr/bin/jellyfish
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/jellyfish/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/jellyfish/bin/
-rwxr-xr-x root/root     18132 2024-01-21 17:34 ./usr/lib/jellyfish/bin/fastq2sam
-rwxr-xr-x root/root     26420 2024-01-21 17:34 ./usr/lib/jellyfish/bin/generate_sequence
-rwxr-xr-x root/root   1160980 2024-01-21 17:34 ./usr/lib/jellyfish/bin/test_all
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc-base/
-rw-r--r-- root/root       987 2024-01-01 10:16 ./usr/share/doc-base/jellyfish.jellyfish
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/jellyfish/
-rw-r--r-- root/root       321 2024-01-01 10:16 ./usr/share/doc/jellyfish/README.test
-rw-r--r-- root/root       218 2024-01-21 17:34 ./usr/share/doc/jellyfish/changelog.Debian.armhf.gz
-rw-r--r-- root/root      2430 2024-01-21 17:34 ./usr/share/doc/jellyfish/changelog.Debian.gz
-rw-r--r-- root/root       284 2023-12-06 21:50 ./usr/share/doc/jellyfish/changelog.gz
-rw-r--r-- root/root      6398 2024-01-01 10:16 ./usr/share/doc/jellyfish/copyright
-rw-r--r-- root/root    221453 2023-12-06 21:50 ./usr/share/doc/jellyfish/jellyfish.pdf.gz
-rw-r--r-- root/root      1665 2024-01-01 10:16 ./usr/share/doc/jellyfish/run-unit-test
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/lintian/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       144 2024-01-01 10:16 ./usr/share/lintian/overrides/jellyfish
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/man/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/man/man1/
-rw-r--r-- root/root      4554 2024-01-21 17:34 ./usr/share/man/man1/jellyfish.1.gz


libjellyfish-2.0-2-dbgsym_2.3.1-2+b4_armhf.deb
----------------------------------------------

 new Debian package, version 2.0.
 size 534004 bytes: control archive=568 bytes.
     438 bytes,    13 lines      control
     106 bytes,     1 lines      md5sums
 Package: libjellyfish-2.0-2-dbgsym
 Source: jellyfish (2.3.1-2)
 Version: 2.3.1-2+b4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 563
 Depends: libjellyfish-2.0-2 (= 2.3.1-2+b4)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libjellyfish-2.0-2
 Build-Ids: e2a65d4f9e1d57e2c8e2d30ea973a8e0dab2aaab

drwxr-xr-x root/root         0 2024-01-21 17:34 ./
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/e2/
-rw-r--r-- root/root    565708 2024-01-21 17:34 ./usr/lib/debug/.build-id/e2/a65d4f9e1d57e2c8e2d30ea973a8e0dab2aaab.debug
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-01-21 17:34 ./usr/share/doc/libjellyfish-2.0-2-dbgsym -> libjellyfish-2.0-2


libjellyfish-2.0-2_2.3.1-2+b4_armhf.deb
---------------------------------------

 new Debian package, version 2.0.
 size 57780 bytes: control archive=1292 bytes.
    1271 bytes,    28 lines      control
     506 bytes,     6 lines      md5sums
      49 bytes,     1 lines      shlibs
      68 bytes,     2 lines      triggers
 Package: libjellyfish-2.0-2
 Source: jellyfish (2.3.1-2)
 Version: 2.3.1-2+b4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 172
 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/gmarcais/Jellyfish
 Description: count k-mers in DNA sequences (dynamic library of jellyfish)
  JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
  DNA. A k-mer is a substring of length k, and counting the occurrences
  of all such substrings is a central step in many analyses of DNA
  sequence. JELLYFISH can count k-mers using an order of magnitude less
  memory and an order of magnitude faster than other k-mer counting
  packages by using an efficient encoding of a hash table and by
  exploiting the "compare-and-swap" CPU instruction to increase
  parallelism.
  .
  JELLYFISH is a command-line program that reads FASTA and multi-FASTA
  files containing DNA sequences. It outputs its k-mer counts in an
  binary format, which can be translated into a human-readable text
  format using the "jellyfish dump" command.
  .
  This package contains the dynamic library the main executable of
  jellyfish is linked to.

drwxr-xr-x root/root         0 2024-01-21 17:34 ./
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root         0 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2 -> libjellyfish-2.0.so.2.0.0
-rw-r--r-- root/root    148900 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so.2.0.0
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/libjellyfish-2.0-2/
-rw-r--r-- root/root       218 2024-01-21 17:34 ./usr/share/doc/libjellyfish-2.0-2/changelog.Debian.armhf.gz
-rw-r--r-- root/root      2431 2024-01-21 17:34 ./usr/share/doc/libjellyfish-2.0-2/changelog.Debian.gz
-rw-r--r-- root/root       284 2023-12-06 21:50 ./usr/share/doc/libjellyfish-2.0-2/changelog.gz
-rw-r--r-- root/root      6398 2024-01-01 10:16 ./usr/share/doc/libjellyfish-2.0-2/copyright
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/lintian/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       178 2024-01-01 10:16 ./usr/share/lintian/overrides/libjellyfish-2.0-2


libjellyfish-2.0-dev_2.3.1-2+b4_armhf.deb
-----------------------------------------

 new Debian package, version 2.0.
 size 127168 bytes: control archive=2544 bytes.
    1227 bytes,    27 lines      control
    4287 bytes,    57 lines      md5sums
 Package: libjellyfish-2.0-dev
 Source: jellyfish (2.3.1-2)
 Version: 2.3.1-2+b4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 600
 Depends: libjellyfish-2.0-2 (= 2.3.1-2+b4)
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/gmarcais/Jellyfish
 Description: count k-mers in DNA sequences (development files of jellyfish)
  JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
  DNA. A k-mer is a substring of length k, and counting the occurrences
  of all such substrings is a central step in many analyses of DNA
  sequence. JELLYFISH can count k-mers using an order of magnitude less
  memory and an order of magnitude faster than other k-mer counting
  packages by using an efficient encoding of a hash table and by
  exploiting the "compare-and-swap" CPU instruction to increase
  parallelism.
  .
  JELLYFISH is a command-line program that reads FASTA and multi-FASTA
  files containing DNA sequences. It outputs its k-mer counts in an
  binary format, which can be translated into a human-readable text
  format using the "jellyfish dump" command.
  .
  This package contains the development files (static library and
  header files)

drwxr-xr-x root/root         0 2024-01-21 17:34 ./
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/include/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/include/jellyfish/
-rw-r--r-- root/root      1596 2024-01-21 17:34 ./usr/include/jellyfish/allocators_mmap.hpp
-rw-r--r-- root/root      5898 2024-01-21 17:34 ./usr/include/jellyfish/atomic_bits_array.hpp
-rw-r--r-- root/root      4770 2024-01-21 17:34 ./usr/include/jellyfish/atomic_field.hpp
-rw-r--r-- root/root      1392 2024-01-21 17:34 ./usr/include/jellyfish/atomic_gcc.hpp
-rw-r--r-- root/root       272 2024-01-21 17:34 ./usr/include/jellyfish/backtrace.hpp
-rw-r--r-- root/root      6829 2024-01-21 17:34 ./usr/include/jellyfish/binary_dumper.hpp
-rw-r--r-- root/root      3480 2024-01-21 17:34 ./usr/include/jellyfish/bloom_common.hpp
-rw-r--r-- root/root      6778 2024-01-21 17:34 ./usr/include/jellyfish/bloom_counter2.hpp
-rw-r--r-- root/root      5447 2024-01-21 17:34 ./usr/include/jellyfish/bloom_filter.hpp
-rw-r--r-- root/root      5211 2024-01-21 17:34 ./usr/include/jellyfish/circular_buffer.hpp
-rw-r--r-- root/root      2408 2024-01-21 17:34 ./usr/include/jellyfish/compare_and_swap.hpp
-rw-r--r-- root/root      7472 2024-01-21 17:34 ./usr/include/jellyfish/cooperative_pool.hpp
-rw-r--r-- root/root      8494 2024-01-21 17:34 ./usr/include/jellyfish/cooperative_pool2.hpp
-rw-r--r-- root/root      4125 2024-01-21 17:34 ./usr/include/jellyfish/cpp_array.hpp
-rw-r--r-- root/root      2742 2024-01-21 17:34 ./usr/include/jellyfish/divisor.hpp
-rw-r--r-- root/root      2710 2024-01-21 17:34 ./usr/include/jellyfish/dumper.hpp
-rw-r--r-- root/root      2257 2024-01-21 17:34 ./usr/include/jellyfish/err.hpp
-rw-r--r-- root/root      4033 2024-01-21 17:34 ./usr/include/jellyfish/file_header.hpp
-rw-r--r-- root/root      4637 2024-01-21 17:34 ./usr/include/jellyfish/generator_manager.hpp
-rw-r--r-- root/root      6814 2024-01-21 17:34 ./usr/include/jellyfish/generic_file_header.hpp
-rw-r--r-- root/root      8326 2024-01-21 17:34 ./usr/include/jellyfish/hash_counter.hpp
-rw-r--r-- root/root      7025 2024-01-21 17:34 ./usr/include/jellyfish/int128.hpp
-rw-r--r-- root/root      1118 2024-01-21 17:34 ./usr/include/jellyfish/jellyfish.hpp
-rw-r--r-- root/root     61697 2024-01-21 17:34 ./usr/include/jellyfish/json.h
-rw-r--r-- root/root     40578 2024-01-21 17:34 ./usr/include/jellyfish/large_hash_array.hpp
-rw-r--r-- root/root      7564 2024-01-21 17:34 ./usr/include/jellyfish/large_hash_iterator.hpp
-rw-r--r-- root/root      4328 2024-01-21 17:34 ./usr/include/jellyfish/locks_pthread.hpp
-rw-r--r-- root/root      5181 2024-01-21 17:34 ./usr/include/jellyfish/mapped_file.hpp
-rw-r--r-- root/root     23866 2024-01-21 17:34 ./usr/include/jellyfish/mer_dna.hpp
-rw-r--r-- root/root      1296 2024-01-21 17:34 ./usr/include/jellyfish/mer_dna_bloom_counter.hpp
-rw-r--r-- root/root      3076 2024-01-21 17:34 ./usr/include/jellyfish/mer_heap.hpp
-rw-r--r-- root/root      2588 2024-01-21 17:34 ./usr/include/jellyfish/mer_iterator.hpp
-rw-r--r-- root/root      9371 2024-01-21 17:34 ./usr/include/jellyfish/mer_overlap_sequence_parser.hpp
-rw-r--r-- root/root      3247 2024-01-21 17:34 ./usr/include/jellyfish/mer_qual_iterator.hpp
-rw-r--r-- root/root      8066 2024-01-21 17:34 ./usr/include/jellyfish/misc.hpp
-rw-r--r-- root/root     10025 2024-01-21 17:34 ./usr/include/jellyfish/offsets_key_value.hpp
-rw-r--r-- root/root       960 2024-01-21 17:34 ./usr/include/jellyfish/parser_common.hpp
-rw-r--r-- root/root     12884 2024-01-21 17:34 ./usr/include/jellyfish/rectangular_binary_matrix.hpp
-rw-r--r-- root/root      2311 2024-01-21 17:34 ./usr/include/jellyfish/sam_format.hpp
-rw-r--r-- root/root      3504 2024-01-21 17:34 ./usr/include/jellyfish/simple_circular_buffer.hpp
-rw-r--r-- root/root      3346 2024-01-21 17:34 ./usr/include/jellyfish/sorted_dumper.hpp
-rw-r--r-- root/root      5069 2024-01-21 17:34 ./usr/include/jellyfish/stdio_filebuf.hpp
-rw-r--r-- root/root       602 2024-01-21 17:34 ./usr/include/jellyfish/storage.hpp
-rw-r--r-- root/root      2036 2024-01-21 17:34 ./usr/include/jellyfish/stream_iterator.hpp
-rw-r--r-- root/root      6318 2024-01-21 17:34 ./usr/include/jellyfish/stream_manager.hpp
-rw-r--r-- root/root      2063 2024-01-21 17:34 ./usr/include/jellyfish/text_dumper.hpp
-rw-r--r-- root/root       994 2024-01-21 17:34 ./usr/include/jellyfish/thread_exec.hpp
-rw-r--r-- root/root      1884 2024-01-21 17:34 ./usr/include/jellyfish/time.hpp
-rw-r--r-- root/root      1599 2024-01-21 17:34 ./usr/include/jellyfish/token_ring.hpp
-rw-r--r-- root/root      6761 2024-01-21 17:34 ./usr/include/jellyfish/whole_sequence_parser.hpp
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root    224258 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.a
-rw-r--r-- root/root      1008 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.la
lrwxrwxrwx root/root         0 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/libjellyfish-2.0.so -> libjellyfish-2.0.so.2.0.0
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root       276 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/pkgconfig/jellyfish-2.0.pc
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/libjellyfish-2.0-dev/
-rw-r--r-- root/root       218 2024-01-21 17:34 ./usr/share/doc/libjellyfish-2.0-dev/changelog.Debian.armhf.gz
-rw-r--r-- root/root      2431 2024-01-21 17:34 ./usr/share/doc/libjellyfish-2.0-dev/changelog.Debian.gz
-rw-r--r-- root/root       284 2023-12-06 21:50 ./usr/share/doc/libjellyfish-2.0-dev/changelog.gz
-rw-r--r-- root/root      6398 2024-01-01 10:16 ./usr/share/doc/libjellyfish-2.0-dev/copyright


libjellyfish-perl-dbgsym_2.3.1-2+b4_armhf.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 344544 bytes: control archive=568 bytes.
     435 bytes,    13 lines      control
     106 bytes,     1 lines      md5sums
 Package: libjellyfish-perl-dbgsym
 Source: jellyfish (2.3.1-2)
 Version: 2.3.1-2+b4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 369
 Depends: libjellyfish-perl (= 2.3.1-2+b4)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libjellyfish-perl
 Build-Ids: 4f507f4562becab8670155f225c7bec4db79cb15

drwxr-xr-x root/root         0 2024-01-21 17:34 ./
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/4f/
-rw-r--r-- root/root    367556 2024-01-21 17:34 ./usr/lib/debug/.build-id/4f/507f4562becab8670155f225c7bec4db79cb15.debug
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-01-21 17:34 ./usr/share/doc/libjellyfish-perl-dbgsym -> libjellyfish-perl


libjellyfish-perl_2.3.1-2+b4_armhf.deb
--------------------------------------

 new Debian package, version 2.0.
 size 56240 bytes: control archive=1168 bytes.
    1247 bytes,    27 lines      control
     497 bytes,     6 lines      md5sums
 Package: libjellyfish-perl
 Source: jellyfish (2.3.1-2)
 Version: 2.3.1-2+b4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 175
 Depends: perl (>= 5.36.0-10), perlapi-5.36.0, libc6 (>= 2.34), libgcc-s1 (>= 3.5)
 Section: perl
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/gmarcais/Jellyfish
 Description: count k-mers in DNA sequences (Perl bindings of jellyfish)
  JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
  DNA. A k-mer is a substring of length k, and counting the occurrences
  of all such substrings is a central step in many analyses of DNA
  sequence. JELLYFISH can count k-mers using an order of magnitude less
  memory and an order of magnitude faster than other k-mer counting
  packages by using an efficient encoding of a hash table and by
  exploiting the "compare-and-swap" CPU instruction to increase
  parallelism.
  .
  JELLYFISH is a command-line program that reads FASTA and multi-FASTA
  files containing DNA sequences. It outputs its k-mer counts in an
  binary format, which can be translated into a human-readable text
  format using the "jellyfish dump" command.
  .
  This package contains the Perl bindings of jellyfish.

drwxr-xr-x root/root         0 2024-01-21 17:34 ./
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/
-rw-r--r-- root/root    145348 2024-01-21 17:34 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/jellyfish/jellyfish.so
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/libjellyfish-perl/
-rw-r--r-- root/root       218 2024-01-21 17:34 ./usr/share/doc/libjellyfish-perl/changelog.Debian.armhf.gz
-rw-r--r-- root/root      2433 2024-01-21 17:34 ./usr/share/doc/libjellyfish-perl/changelog.Debian.gz
-rw-r--r-- root/root       284 2023-12-06 21:50 ./usr/share/doc/libjellyfish-perl/changelog.gz
-rw-r--r-- root/root      6398 2024-01-01 10:16 ./usr/share/doc/libjellyfish-perl/copyright
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/perl5/
-rw-r--r-- root/root      7414 2024-01-21 17:34 ./usr/share/perl5/jellyfish.pm


python3-dna-jellyfish-dbgsym_2.3.1-2+b4_armhf.deb
-------------------------------------------------

 new Debian package, version 2.0.
 size 332896 bytes: control archive=560 bytes.
     430 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: python3-dna-jellyfish-dbgsym
 Source: jellyfish (2.3.1-2)
 Version: 2.3.1-2+b4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 362
 Depends: python3-dna-jellyfish (= 2.3.1-2+b4)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-dna-jellyfish
 Build-Ids: bcd8aa2f3173cc4c764daf458d2596e745f0b627

drwxr-xr-x root/root         0 2024-01-21 17:34 ./
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/debug/.build-id/bc/
-rw-r--r-- root/root    359780 2024-01-21 17:34 ./usr/lib/debug/.build-id/bc/d8aa2f3173cc4c764daf458d2596e745f0b627.debug
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-01-21 17:34 ./usr/share/doc/python3-dna-jellyfish-dbgsym -> python3-dna-jellyfish


python3-dna-jellyfish_2.3.1-2+b4_armhf.deb
------------------------------------------

 new Debian package, version 2.0.
 size 54212 bytes: control archive=1600 bytes.
    1308 bytes,    26 lines      control
     867 bytes,     9 lines      md5sums
     289 bytes,    12 lines   *  postinst             #!/bin/sh
     402 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-dna-jellyfish
 Source: jellyfish (2.3.1-2)
 Version: 2.3.1-2+b4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 176
 Depends: python3 (<< 3.12), python3 (>= 3.11~), python3:any, libc6 (>= 2.34), libgcc-s1 (>= 3.5), libjellyfish-2.0-2 (>= 2.3.1), libstdc++6 (>= 13.1)
 Section: python
 Priority: optional
 Homepage: https://github.com/gmarcais/Jellyfish
 Description: count k-mers in DNA sequences (Python bindings of jellyfish)
  JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
  DNA. A k-mer is a substring of length k, and counting the occurrences
  of all such substrings is a central step in many analyses of DNA
  sequence. JELLYFISH can count k-mers using an order of magnitude less
  memory and an order of magnitude faster than other k-mer counting
  packages by using an efficient encoding of a hash table and by
  exploiting the "compare-and-swap" CPU instruction to increase
  parallelism.
  .
  JELLYFISH is a command-line program that reads FASTA and multi-FASTA
  files containing DNA sequences. It outputs its k-mer counts in an
  binary format, which can be translated into a human-readable text
  format using the "jellyfish dump" command.
  .
  This package contains the Python bindings of jellyfish.

drwxr-xr-x root/root         0 2024-01-21 17:34 ./
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/python3/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/python3/dist-packages/
-rw-r--r-- root/root    138736 2024-01-21 17:34 ./usr/lib/python3/dist-packages/_dna_jellyfish.cpython-311-arm-linux-gnueabihf.so
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/lib/python3/dist-packages/dna_jellyfish-0.0.1.egg-info/
-rw-r--r-- root/root       127 2024-01-21 17:34 ./usr/lib/python3/dist-packages/dna_jellyfish-0.0.1.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2024-01-21 17:34 ./usr/lib/python3/dist-packages/dna_jellyfish-0.0.1.egg-info/dependency_links.txt
-rw-r--r-- root/root        29 2024-01-21 17:34 ./usr/lib/python3/dist-packages/dna_jellyfish-0.0.1.egg-info/top_level.txt
-rw-r--r-- root/root     12643 2024-01-21 17:34 ./usr/lib/python3/dist-packages/dna_jellyfish.py
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-01-21 17:34 ./usr/share/doc/python3-dna-jellyfish/
-rw-r--r-- root/root       218 2024-01-21 17:34 ./usr/share/doc/python3-dna-jellyfish/changelog.Debian.armhf.gz
-rw-r--r-- root/root      2431 2024-01-21 17:34 ./usr/share/doc/python3-dna-jellyfish/changelog.Debian.gz
-rw-r--r-- root/root       284 2023-12-06 21:50 ./usr/share/doc/python3-dna-jellyfish/changelog.gz
-rw-r--r-- root/root      6398 2024-01-01 10:16 ./usr/share/doc/python3-dna-jellyfish/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 127508
Build-Time: 244
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 83
Job: jellyfish_2.3.1-2
Machine Architecture: arm64
Package: jellyfish
Package-Time: 336
Source-Version: 2.3.1-2
Space: 127508
Status: successful
Version: 2.3.1-2+b4
--------------------------------------------------------------------------------
Finished at 2024-01-21T17:38:13Z
Build needed 00:05:36, 127508k disk space
Raspbian Package Auto-Building

Build log for jellyfish (2.3.1-2+b4) on armhf
