Raspbian Package Auto-Building

Build log for jellyfish (2.2.10-2) on armhf

jellyfish2.2.10-2armhf → 2023-03-29 19:22:43

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01

+==============================================================================+
| jellyfish 2.2.10-2 (armhf)                   Wed, 29 Mar 2023 19:16:00 +0000 |
+==============================================================================+

Package: jellyfish
Version: 2.2.10-2
Source Version: 2.2.10-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-c5d48a27-c673-4a74-a948-76ee8fdbfbd7' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.4.1/private buster-staging/main armhf Packages [13.0 MB]
Fetched 24.4 MB in 9s (2791 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'jellyfish' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/jellyfish.git
Please use:
git clone https://salsa.debian.org/med-team/jellyfish.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 692 kB of source archives.
Get:1 http://172.17.4.1/private buster-staging/main jellyfish 2.2.10-2 (dsc) [2431 B]
Get:2 http://172.17.4.1/private buster-staging/main jellyfish 2.2.10-2 (tar) [677 kB]
Get:3 http://172.17.4.1/private buster-staging/main jellyfish 2.2.10-2 (diff) [12.1 kB]
Fetched 692 kB in 0s (7443 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/jellyfish-IKzd6I/jellyfish-2.2.10' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/jellyfish-IKzd6I' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-b1hkPN/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-b1hkPN/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-b1hkPN/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (7442 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
  libgpg-error-l10n libnss-systemd libpam-systemd openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 44 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15896 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), d-shlibs, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, python-all-dev, dh-python, perl, chrpath
Filtered Build-Depends: debhelper (>= 11~), d-shlibs, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, python-all-dev, dh-python, perl, chrpath
dpkg-deb: building package 'sbuild-build-depends-jellyfish-dummy' in '/<<BUILDDIR>>/resolver-b1hkPN/apt_archive/sbuild-build-depends-jellyfish-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-jellyfish-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ Sources [559 B]
Get:5 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ Packages [641 B]
Fetched 2533 B in 0s (9309 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install jellyfish build dependencies (apt-based resolver)
---------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus dbus-user-session e2fsprogs-l10n libgpg-error-l10n libnss-systemd
  libpam-systemd
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bc bsdmainutils chrpath d-shlibs
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
  libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
  libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libpipeline1
  libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
  libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib
  libruby2.5 libsigsegv2 libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db
  mime-support pkg-config po-debconf python python-all python-all-dev
  python-dev python-minimal python2 python2-dev python2-minimal python2.7
  python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
  python3-dev python3-distutils python3-lib2to3 python3-minimal python3.7
  python3.7-dev python3.7-minimal rake ruby ruby-did-you-mean ruby-minitest
  ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5
  rubygems-integration swig swig3.0 time yaggo
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc
  binfmt-support python3-doc python3-tk python3-venv python3.7-venv
  python3.7-doc ri ruby-dev bundler swig-doc swig-examples swig3.0-examples
  swig3.0-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bc bsdmainutils chrpath d-shlibs
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
  libcroco3 libelf1 libexpat1-dev libfile-stripnondeterminism-perl
  libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libpipeline1
  libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
  libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib
  libruby2.5 libsigsegv2 libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db
  mime-support pkg-config po-debconf python python-all python-all-dev
  python-dev python-minimal python2 python2-dev python2-minimal python2.7
  python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
  python3-dev python3-distutils python3-lib2to3 python3-minimal python3.7
  python3.7-dev python3.7-minimal rake ruby ruby-did-you-mean ruby-minitest
  ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5
  rubygems-integration sbuild-build-depends-jellyfish-dummy swig swig3.0 time
  yaggo
The following packages will be upgraded:
  libexpat1
1 upgraded, 93 newly installed, 0 to remove and 43 not upgraded.
Need to get 113 MB of archives.
After this operation, 252 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-b1hkPN/apt_archive ./ sbuild-build-depends-jellyfish-dummy 0.invalid.0 [924 B]
Get:2 http://172.17.4.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-2+deb10u1 [105 kB]
Get:3 http://172.17.4.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.4.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:5 http://172.17.4.1/private buster-staging/main armhf groff-base armhf 1.22.4-3+deb10u1 [782 kB]
Get:6 http://172.17.4.1/private buster-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:7 http://172.17.4.1/private buster-staging/main armhf man-db armhf 2.8.5-2 [1230 kB]
Get:8 http://172.17.4.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.16-2+deb10u1 [395 kB]
Get:9 http://172.17.4.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.16-2+deb10u1 [1091 kB]
Get:10 http://172.17.4.1/private buster-staging/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB]
Get:11 http://172.17.4.1/private buster-staging/main armhf python-minimal armhf 2.7.16-1 [21.0 kB]
Get:12 http://172.17.4.1/private buster-staging/main armhf mime-support all 3.62 [37.2 kB]
Get:13 http://172.17.4.1/private buster-staging/main armhf libexpat1 armhf 2.2.6-2+deb10u6 [78.8 kB]
Get:14 http://172.17.4.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.16-2+deb10u1 [1844 kB]
Get:15 http://172.17.4.1/private buster-staging/main armhf python2.7 armhf 2.7.16-2+deb10u1 [305 kB]
Get:16 http://172.17.4.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB]
Get:17 http://172.17.4.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB]
Get:18 http://172.17.4.1/private buster-staging/main armhf python2 armhf 2.7.16-1 [41.6 kB]
Get:19 http://172.17.4.1/private buster-staging/main armhf python armhf 2.7.16-1 [22.8 kB]
Get:20 http://172.17.4.1/private buster-staging/main armhf libpython3.7-minimal armhf 3.7.3-2+deb10u4 [583 kB]
Get:21 http://172.17.4.1/private buster-staging/main armhf python3.7-minimal armhf 3.7.3-2+deb10u4 [1463 kB]
Get:22 http://172.17.4.1/private buster-staging/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB]
Get:23 http://172.17.4.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:24 http://172.17.4.1/private buster-staging/main armhf libpython3.7-stdlib armhf 3.7.3-2+deb10u4 [1663 kB]
Get:25 http://172.17.4.1/private buster-staging/main armhf python3.7 armhf 3.7.3-2+deb10u4 [330 kB]
Get:26 http://172.17.4.1/private buster-staging/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB]
Get:27 http://172.17.4.1/private buster-staging/main armhf python3 armhf 3.7.3-1 [61.5 kB]
Get:28 http://172.17.4.1/private buster-staging/main armhf bc armhf 1.07.1-2 [101 kB]
Get:29 http://172.17.4.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.35-4+deb10u2 [242 kB]
Get:30 http://172.17.4.1/private buster-staging/main armhf libmagic1 armhf 1:5.35-4+deb10u2 [110 kB]
Get:31 http://172.17.4.1/private buster-staging/main armhf file armhf 1:5.35-4+deb10u2 [65.5 kB]
Get:32 http://172.17.4.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:33 http://172.17.4.1/private buster-staging/main armhf time armhf 1.7-25.1 [30.8 kB]
Get:34 http://172.17.4.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:35 http://172.17.4.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:36 http://172.17.4.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:37 http://172.17.4.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:38 http://172.17.4.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:39 http://172.17.4.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:40 http://172.17.4.1/private buster-staging/main armhf chrpath armhf 0.16-2 [15.4 kB]
Get:41 http://172.17.4.1/private buster-staging/main armhf d-shlibs all 0.84 [17.2 kB]
Get:42 http://172.17.4.1/private buster-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:43 http://172.17.4.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:44 http://172.17.4.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:45 http://172.17.4.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get:46 http://172.17.4.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get:47 http://172.17.4.1/private buster-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:48 http://172.17.4.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:49 http://172.17.4.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u4 [1079 kB]
Get:50 http://172.17.4.1/private buster-staging/main armhf libicu63 armhf 63.1-6+deb10u3 [7973 kB]
Get:51 http://172.17.4.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+deb10u5 [572 kB]
Get:52 http://172.17.4.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:53 http://172.17.4.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:54 http://172.17.4.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:55 http://172.17.4.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:56 http://172.17.4.1/private buster-staging/main armhf debhelper all 12.1.1 [1016 kB]
Get:57 http://172.17.4.1/private buster-staging/main armhf python3-lib2to3 all 3.7.3-1 [76.7 kB]
Get:58 http://172.17.4.1/private buster-staging/main armhf python3-distutils all 3.7.3-1 [142 kB]
Get:59 http://172.17.4.1/private buster-staging/main armhf dh-python all 3.20190308 [99.3 kB]
Get:60 http://172.17.4.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-2+deb10u6 [134 kB]
Get:61 http://172.17.4.1/private buster-staging/main armhf libpython2.7 armhf 2.7.16-2+deb10u1 [873 kB]
Get:62 http://172.17.4.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.16-2+deb10u1 [30.9 MB]
Get:63 http://172.17.4.1/private buster-staging/main armhf libpython2-dev armhf 2.7.16-1 [20.9 kB]
Get:64 http://172.17.4.1/private buster-staging/main armhf libpython-dev armhf 2.7.16-1 [20.9 kB]
Get:65 http://172.17.4.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.16-1 [1064 B]
Get:66 http://172.17.4.1/private buster-staging/main armhf libpython3.7 armhf 3.7.3-2+deb10u4 [1254 kB]
Get:67 http://172.17.4.1/private buster-staging/main armhf libpython3.7-dev armhf 3.7.3-2+deb10u4 [47.2 MB]
Get:68 http://172.17.4.1/private buster-staging/main armhf libpython3-dev armhf 3.7.3-1 [20.1 kB]
Get:69 http://172.17.4.1/private buster-staging/main armhf libpython3-all-dev armhf 3.7.3-1 [1068 B]
Get:70 http://172.17.4.1/private buster-staging/main armhf rubygems-integration all 1.11+deb10u1 [5212 B]
Get:71 http://172.17.4.1/private buster-staging/main armhf ruby2.5 armhf 2.5.5-3+deb10u4 [400 kB]
Get:72 http://172.17.4.1/private buster-staging/main armhf ruby armhf 1:2.5.1+b1 [11.6 kB]
Get:73 http://172.17.4.1/private buster-staging/main armhf rake all 12.3.1-3+deb10u1 [67.1 kB]
Get:74 http://172.17.4.1/private buster-staging/main armhf ruby-did-you-mean all 1.2.1-1 [14.4 kB]
Get:75 http://172.17.4.1/private buster-staging/main armhf ruby-minitest all 5.11.3-1 [54.8 kB]
Get:76 http://172.17.4.1/private buster-staging/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB]
Get:77 http://172.17.4.1/private buster-staging/main armhf ruby-power-assert all 1.1.1-1 [10.9 kB]
Get:78 http://172.17.4.1/private buster-staging/main armhf ruby-test-unit all 3.2.8-1 [72.4 kB]
Get:79 http://172.17.4.1/private buster-staging/main armhf ruby-xmlrpc all 0.3.0-2 [23.7 kB]
Get:80 http://172.17.4.1/private buster-staging/main armhf libyaml-0-2 armhf 0.2.1-1 [38.8 kB]
Get:81 http://172.17.4.1/private buster-staging/main armhf libruby2.5 armhf 2.5.5-3+deb10u4 [3152 kB]
Get:82 http://172.17.4.1/private buster-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:83 http://172.17.4.1/private buster-staging/main armhf python-all armhf 2.7.16-1 [1044 B]
Get:84 http://172.17.4.1/private buster-staging/main armhf python2.7-dev armhf 2.7.16-2+deb10u1 [291 kB]
Get:85 http://172.17.4.1/private buster-staging/main armhf python2-dev armhf 2.7.16-1 [1216 B]
Get:86 http://172.17.4.1/private buster-staging/main armhf python-dev armhf 2.7.16-1 [1192 B]
Get:87 http://172.17.4.1/private buster-staging/main armhf python-all-dev armhf 2.7.16-1 [1068 B]
Get:88 http://172.17.4.1/private buster-staging/main armhf python3-all armhf 3.7.3-1 [1068 B]
Get:89 http://172.17.4.1/private buster-staging/main armhf python3.7-dev armhf 3.7.3-2+deb10u4 [526 kB]
Get:90 http://172.17.4.1/private buster-staging/main armhf python3-dev armhf 3.7.3-1 [1264 B]
Get:91 http://172.17.4.1/private buster-staging/main armhf python3-all-dev armhf 3.7.3-1 [1064 B]
Get:92 http://172.17.4.1/private buster-staging/main armhf swig3.0 armhf 3.0.12-2 [1221 kB]
Get:93 http://172.17.4.1/private buster-staging/main armhf swig armhf 3.0.12-2 [310 kB]
Get:94 http://172.17.4.1/private buster-staging/main armhf yaggo all 1.5.10-2 [18.9 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 113 MB in 11s (9927 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 15896 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_armhf.deb ...
Unpacking libbsd0:armhf (0.9.1-2+deb10u1) ...
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Setting up debhelper (12.1.1) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up ruby2.5 (2.5.5-3+deb10u4) ...
Setting up ruby (1:2.5.1+b1) ...
Setting up yaggo (1.5.10-2) ...
Setting up sbuild-build-depends-jellyfish-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-16+rpi2 dpkg-dev_1.19.7 g++-8_8.3.0-6+rpi1 gcc-8_8.3.0-6+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1+deb10u10 base-passwd_3.5.46 bash_5.0-4 bc_1.07.1-2 binutils_2.31.1-16+rpi2 binutils-arm-linux-gnueabihf_2.31.1-16+rpi2 binutils-common_2.31.1-16+rpi2 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.2~deb10u1 ca-certificates_20200601~deb10u2 chrpath_0.16-2 coreutils_8.30-3 cpio_2.12+dfsg-9 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-6+rpi1 d-shlibs_0.84 dash_0.5.10.2-5 dbus_1.12.20-0+deb10u1 dbus-user-session_1.12.20-0+deb10u1 debconf_1.5.71 debhelper_12.1.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-python_3.20190308 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1+deb10u1 dmsetup_2:1.02.155-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.12-3 e2fslibs_1.44.5-1+deb10u3 e2fsprogs_1.44.5-1+deb10u3 e2fsprogs-l10n_1.44.5-1+deb10u3 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4+deb10u2 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-6+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.3.0-6+rpi1 gcc-8-base_8.3.0-6+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1+deb10u1 gnupg-agent_2.2.12-1+rpi1+deb10u1 gnupg-l10n_2.2.12-1+rpi1+deb10u1 gnupg-utils_2.2.12-1+rpi1+deb10u1 gpg_2.2.12-1+rpi1+deb10u1 gpg-agent_2.2.12-1+rpi1+deb10u1 gpg-wks-client_2.2.12-1+rpi1+deb10u1 gpg-wks-server_2.2.12-1+rpi1+deb10u1 gpgconf_2.2.12-1+rpi1+deb10u1 gpgsm_2.2.12-1+rpi1+deb10u1 gpgv_2.2.12-1+rpi1+deb10u1 grep_3.3-1 groff-base_1.22.4-3+deb10u1 gzip_1.9-3 hostname_3.21 inetutils-ping_2:1.9.4-7+deb10u1 init-system-helpers_1.56+nmu1 initramfs-tools_0.133+deb10u1 initramfs-tools-core_0.133+deb10u1 intltool-debian_0.35.0+20060710.5 klibc-utils_2.0.6-1+rpi1+deb10u1 kmod_26-1 libacl1_2.2.53-4 libapparmor1_2.13.2-10 libapt-pkg5.0_1.8.2.3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_8.3.0-6+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-6+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi2 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2+deb10u1 libbz2-1.0_1.0.6-9.2~deb10u1 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_8.3.0-6+rpi1 libcom-err2_1.44.5-1+deb10u3 libcroco3_0.6.12-3 libcryptsetup12_2:2.1.0-5+deb10u2 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28+dfsg1-0.5 libdbus-1-3_1.12.20-0+deb10u1 libdebconfclient0_0.249 libdevmapper1.02.1_2:1.02.155-3 libdpkg-perl_1.19.7 libdrm-common_2.4.97-1+rpi1 libdrm2_2.4.97-1+rpi1 libelf1_0.176-1.1 libexpat1_2.2.6-2+deb10u6 libexpat1-dev_2.2.6-2+deb10u6 libext2fs2_1.44.5-1+deb10u3 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.2-1 libfl2_2.6.4-6.2 libgcc-8-dev_8.3.0-6+rpi1 libgcc1_1:8.3.0-6+rpi1 libgcrypt20_1.8.4-5+deb10u1 libgdbm-compat4_1.18.1-4 libgdbm3_1.8.3-14 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-2+deb10u4 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4+deb10u7 libgomp1_8.3.0-6+rpi1 libgpg-error-l10n_1.35-1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1+deb10u1 libicu63_63.1-6+deb10u3 libidn11_1.33-2.2 libidn2-0_2.0.5-1+deb10u1 libip4tc0_1.8.2-4 libisl19_0.20-2 libjson-c3_0.12.1+ds-2+deb10u1 libklibc_2.0.6-1+rpi1+deb10u1 libkmod2_26-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1+deb10u6 libldap-common_2.4.47+dfsg-3+rpi1+deb10u6 liblz4-1_1.8.3-1+deb10u1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4+deb10u2 libmagic1_1:5.35-4+deb10u2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses5_6.1+20181013-2+deb10u2 libncurses6_6.1+20181013-2+deb10u2 libncursesw5_6.1+20181013-2+deb10u2 libncursesw6_6.1+20181013-2+deb10u2 libnettle6_3.4.1-1+deb10u1 libnpth0_1.6-1 libnss-systemd_241-7~deb10u8+rpi1 libp11-kit0_0.23.15-2+deb10u1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam-systemd_241-7~deb10u8+rpi1 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.24_5.24.1-7 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libplymouth4_0.9.4-1.1 libpng16-16_1.6.36-6 libprocps7_2:3.3.15-2 libpython-all-dev_2.7.16-1 libpython-dev_2.7.16-1 libpython-stdlib_2.7.16-1 libpython2-dev_2.7.16-1 libpython2-stdlib_2.7.16-1 libpython2.7_2.7.16-2+deb10u1 libpython2.7-dev_2.7.16-2+deb10u1 libpython2.7-minimal_2.7.16-2+deb10u1 libpython2.7-stdlib_2.7.16-2+deb10u1 libpython3-all-dev_3.7.3-1 libpython3-dev_3.7.3-1 libpython3-stdlib_3.7.3-1 libpython3.7_3.7.3-2+deb10u4 libpython3.7-dev_3.7.3-2+deb10u4 libpython3.7-minimal_3.7.3-2+deb10u4 libpython3.7-stdlib_3.7.3-2+deb10u4 libreadline7_7.0-5 libruby2.5_2.5.5-3+deb10u4 libsasl2-2_2.1.27+dfsg-1+deb10u1 libsasl2-modules-db_2.1.27+dfsg-1+deb10u1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3+deb10u1 libss2_1.44.5-1+deb10u3 libssl1.1_1.1.1d-0+deb10u6 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 libsystemd0_241-7~deb10u8+rpi1 libtasn1-6_4.13-3 libtinfo5_6.1+20181013-2+deb10u2 libtinfo6_6.1+20181013-2+deb10u2 libtool_2.4.6-9 libubsan1_8.3.0-6+rpi1 libuchardet0_0.0.6-3 libudev1_241-7~deb10u8+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.33.1-0.1 libxml2_2.9.4+dfsg1-7+deb10u5 libyaml-0-2_0.2.1-1 libzstd1_1.3.8+dfsg-3+rpi1+deb10u2 linux-base_4.6 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.5-2 mawk_1.3.3-17 mime-support_3.62 mount_2.33.1-0.1 multiarch-support_2.28-10+rpi1 nano_3.2-3 ncurses-base_6.1+20181013-2+deb10u2 ncurses-bin_6.1+20181013-2+deb10u2 netbase_5.6 openssl_1.1.1d-0+deb10u6 passwd_1:4.5-1.1 patch_2.7.6-3+deb10u1 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-6+deb10u1 pinentry-curses_1.1.0-2 pkg-config_0.29-6 plymouth_0.9.4-1.1 po-debconf_1.0.21 procps_2:3.3.15-2 python_2.7.16-1 python-all_2.7.16-1 python-all-dev_2.7.16-1 python-dev_2.7.16-1 python-minimal_2.7.16-1 python2_2.7.16-1 python2-dev_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.16-2+deb10u1 python2.7-dev_2.7.16-2+deb10u1 python2.7-minimal_2.7.16-2+deb10u1 python3_3.7.3-1 python3-all_3.7.3-1 python3-all-dev_3.7.3-1 python3-dev_3.7.3-1 python3-distutils_3.7.3-1 python3-lib2to3_3.7.3-1 python3-minimal_3.7.3-1 python3.7_3.7.3-2+deb10u4 python3.7-dev_3.7.3-2+deb10u4 python3.7-minimal_3.7.3-2+deb10u4 rake_12.3.1-3+deb10u1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 ruby_1:2.5.1+b1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.11.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.8-1 ruby-xmlrpc_0.3.0-2 ruby2.5_2.5.5-3+deb10u4 rubygems-integration_1.11+deb10u1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-jellyfish-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 swig_3.0.12-2 swig3.0_3.0.12-2 systemd_241-7~deb10u8+rpi1 systemd-sysv_241-7~deb10u8+rpi1 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 time_1.7-25.1 tzdata_2021a-0+deb10u1 udev_241-7~deb10u8+rpi1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 yaggo_1.5.10-2 zlib1g_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Dec 24 14:47:04 2018 UTC
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./jellyfish_2.2.10-2.dsc
dpkg-source: info: extracting jellyfish in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking jellyfish_2.2.10.orig.tar.gz
dpkg-source: info: unpacking jellyfish_2.2.10-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying manpage_whatis_entry.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying portability.patch
dpkg-source: info: applying fix_catch.patch
dpkg-source: info: applying fix_replacement_of_-L_option.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-c5d48a27-c673-4a74-a948-76ee8fdbfbd7
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package jellyfish
dpkg-buildpackage: info: source version 2.2.10-2
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean # --with python3
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
if [ -d debian/tmp_save_tests ] ; then \
    mv debian/tmp_save_tests/* tests ; \
    rmdir debian/tmp_save_tests ; \
fi
rm -f tests/compat.sh
rm -f swig/python/jellyfish* # swig/python/dna_jellyfish.py
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules build-arch
dh build-arch # --with python3
   dh_update_autotools_config -a
   dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:8: installing './compile'
configure.ac:2: installing './config.guess'
configure.ac:2: installing './config.sub'
configure.ac:4: installing './install-sh'
configure.ac:4: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-swig --enable-perl-binding # --enable-python-binding
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-swig --enable-perl-binding
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for HTSLIB... no
checking for samtools... no
checking for md5sum... md5sum
checking for yaggo... /usr/bin/yaggo
checking for x86 cpuid  output... unknown
checking for x86-AVX xgetbv  output... unknown
checking for __int128... no
checking for std::numeric_limits<__int128>... no
checking for _NSGetExecutablePath... no
checking for execinfo.h... yes
checking for ext/stdio_filebuf.h... yes
checking for sys/syscall.h... yes
checking for siginfo_t.si_int... yes
checking for swig... /usr/bin/swig
checking SWIG version... 3.0.12
checking for SWIG library... /usr/share/swig3.0
checking for perl... /usr/bin/perl
checking for Perl prefix... /usr
checking for Perl extension include path... /usr/lib/arm-linux-gnueabihf/perl/5.28/CORE
checking for Perl extension target directory... /usr/lib/perl/5.28.0
checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
checking for Perl extensions linker flags... -shared -L/usr/local/lib -fstack-protector-strong
checking for posix_memalign... yes
checking for aligned_alloc... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tests/compat.sh
config.status: creating jellyfish-2.0.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/tmp_save_tests
cp -a tests/* debian/tmp_save_tests
dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam
	make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/yaggo --license ./header-license -o sub_commands/count_main_cmdline.hpp sub_commands/count_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/info_main_cmdline.hpp sub_commands/info_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/dump_main_cmdline.hpp sub_commands/dump_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/histo_main_cmdline.hpp sub_commands/histo_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/stats_main_cmdline.hpp sub_commands/stats_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/merge_main_cmdline.hpp sub_commands/merge_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/bc_main_cmdline.hpp sub_commands/bc_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/query_main_cmdline.hpp sub_commands/query_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/cite_main_cmdline.hpp sub_commands/cite_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o sub_commands/mem_main_cmdline.hpp sub_commands/mem_main_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o jellyfish/generate_sequence_cmdline.hpp jellyfish/generate_sequence_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o jellyfish/fastq2sam_cmdline.hpp jellyfish/fastq2sam_cmdline.yaggo
/usr/bin/yaggo --license ./header-license -o unit_tests/test_main_cmdline.hpp unit_tests/test_main_cmdline.yaggo
/usr/bin/swig -c++ -perl5 -I./../include -o swig/perl5/swig_wrap.cpp swig/jellyfish.i
make  all-am
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2   -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/jellyfish.o sub_commands/jellyfish.cc
g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include  -Wdate-time -D_FORTIFY_SOURCE=2   -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/count_main.o sub_commands/count_main.cc
In file included from ./include/jellyfish/large_hash_array.hpp:27,
                 from ./include/jellyfish/hash_counter.hpp:22,
                 from sub_commands/count_main.cc:38:
./include/jellyfish/rectangular_binary_matrix.hpp: In member function 'bool jellyfish::RectangularBinaryMatrix::is_zero() const':
./include/jellyfish/rectangular_binary_matrix.hpp:127:29: error: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Werror=sign-compare]
       return (p - _columns) == _c;
              ~~~~~~~~~~~~~~~^~~~~
cc1plus: all warnings being treated as errors
make[3]: *** [Makefile:1749: sub_commands/count_main.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:1029: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam returned exit code 2
make[1]: *** [debian/rules:68: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:19: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2023-03-29T19:22:41Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 8748
Build-Time: 65
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 317
Job: jellyfish_2.2.10-2
Machine Architecture: armhf
Package: jellyfish
Package-Time: 401
Source-Version: 2.2.10-2
Space: 8748
Status: attempted
Version: 2.2.10-2
--------------------------------------------------------------------------------
Finished at 2023-03-29T19:22:41Z
Build needed 00:06:41, 8748k disk space