ismrmrd →
1.4.0-1 →
armhf → 2019-03-16 00:42:35
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| ismrmrd 1.4.0-1 (armhf) Sat, 16 Mar 2019 00:35:34 +0000 |
+==============================================================================+
Package: ismrmrd
Version: 1.4.0-1
Source Version: 1.4.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-074e1798-fdf6-45d5-8ee6-ec47fc7faee7' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.1 MB]
Fetched 24.4 MB in 9s (2693 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ismrmrd' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/ismrmrd.git
Please use:
git clone https://salsa.debian.org/med-team/ismrmrd.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 207 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main ismrmrd 1.4.0-1 (dsc) [2371 B]
Get:2 http://172.17.0.1/private buster-staging/main ismrmrd 1.4.0-1 (tar) [198 kB]
Get:3 http://172.17.0.1/private buster-staging/main ismrmrd 1.4.0-1 (diff) [6084 B]
Fetched 207 kB in 0s (557 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ismrmrd-L4gRkC/ismrmrd-1.4.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ismrmrd-L4gRkC' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ukcCDJ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ukcCDJ/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (8946 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libnss-systemd libpam-systemd openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 46 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15903 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: cmake, debhelper (>= 12~), libboost-program-options-dev, libboost-test-dev, libfftw3-dev, libhdf5-dev, libpugixml-dev
Filtered Build-Depends: cmake, debhelper (>= 12~), libboost-program-options-dev, libboost-test-dev, libfftw3-dev, libhdf5-dev, libpugixml-dev
dpkg-deb: building package 'sbuild-build-depends-ismrmrd-dummy' in '/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive/sbuild-build-depends-ismrmrd-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-ismrmrd-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ Sources [538 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ Packages [620 B]
Fetched 2491 B in 0s (10.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install ismrmrd build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales
libgpg-error-l10n libnss-systemd libpam-systemd openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
cpp-8 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-8 gcc-8
gcc-8-base gettext gettext-base groff-base hdf5-helpers intltool-debian
libaec-dev libaec0 libarchive-zip-perl libarchive13 libasan5 libatomic1
libboost-chrono1.67.0 libboost-program-options-dev
libboost-program-options1.67-dev libboost-program-options1.67.0
libboost-system1.67.0 libboost-test-dev libboost-test1.67-dev
libboost-test1.67.0 libboost-timer1.67.0 libboost1.67-dev libbsd0 libcc1-0
libcroco3 libcurl4 libelf1 libfftw3-bin libfftw3-dev libfftw3-double3
libfftw3-single3 libfile-stripnondeterminism-perl libgcc-8-dev libgcc1
libgfortran5 libglib2.0-0 libgomp1 libhdf5-103 libhdf5-cpp-103 libhdf5-dev
libicu63 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp1
libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libpugixml-dev
libpugixml1v5 librhash0 librtmp1 libsigsegv2 libssh2-1 libstdc++-8-dev
libstdc++6 libsz2 libtool libubsan1 libuchardet0 libuv1 libxml2 m4 man-db
po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build gcc-8-locales dh-make gcc-8-doc
libstdc++6-8-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg
libasan5-dbg liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg
libquadmath0-dbg gettext-doc libasprintf-dev libgettextpo-dev groff lrzip
libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev
libboost-container1.67-dev libboost-context1.67-dev
libboost-coroutine1.67-dev libboost-date-time1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-thread1.67-dev
libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev
libboost1.67-tools-dev libmpfrc++-dev libntl-dev libfftw3-doc libhdf5-doc
libstdc++-8-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libboost-chrono1.67.0
libboost-program-options-dev libboost-program-options1.67-dev
libboost-program-options1.67.0 libboost-system1.67.0 libboost-test-dev
libboost-test1.67-dev libboost-test1.67.0 libboost-timer1.67.0
libboost1.67-dev libbsd0 libcroco3 libcurl4 libelf1 libfftw3-bin
libfftw3-dev libfftw3-double3 libfftw3-single3
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-103
libhdf5-cpp-103 libhdf5-dev libicu63 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjsoncpp1 libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 libpugixml-dev libpugixml1v5 librhash0 librtmp1
libsigsegv2 libssh2-1 libsz2 libtool libuchardet0 libuv1 libxml2 m4 man-db
po-debconf sbuild-build-depends-ismrmrd-dummy zlib1g-dev
The following packages will be upgraded:
cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev
libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
13 upgraded, 71 newly installed, 0 to remove and 33 not upgraded.
Need to get 64.9 MB/65.4 MB of archives.
After this operation, 264 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ukcCDJ/apt_archive ./ sbuild-build-depends-ismrmrd-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-2 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.3.0-2+rpi1 [37.9 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.3.0-2+rpi1 [190 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.3.0-2+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.3.0-2+rpi1 [64.3 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.3.0-2+rpi1 [8108 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.3.0-2+rpi1 [317 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.3.0-2+rpi1 [103 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.3.0-2+rpi1 [7480 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.3.0-2+rpi1 [1545 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.3.0-2+rpi1 [595 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.3.0-2+rpi1 [7234 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.3.0-2+rpi1 [6805 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.3.0-2+rpi1 [325 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.5-2 [1230 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.35-4 [242 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.35-4 [110 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.35-4 [65.3 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.13.4-1 [1476 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-6 [7973 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.3.3-4 [270 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.36.0-2 [73.6 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.64.0-1 [292 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.8-1 [132 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.24.1-1 [96.7 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.13.4-1 [2559 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.1.1-1 [19.7 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.1.1-1 [13.0 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.176-1 [158 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.3-1 [1077 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf debhelper all 12.1.1 [1016 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.4+repack-10 [35.2 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libboost-system1.67.0 armhf 1.67.0-13 [228 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libboost-chrono1.67.0 armhf 1.67.0-13 [231 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libboost1.67-dev armhf 1.67.0-13 [8386 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.67.0 armhf 1.67.0-13 [330 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libboost-program-options1.67-dev armhf 1.67.0-13 [374 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libboost-program-options-dev armhf 1.67.0.1+b1 [3940 B]
Get:64 http://172.17.0.1/private buster-staging/main armhf libboost-timer1.67.0 armhf 1.67.0-13 [229 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libboost-test1.67.0 armhf 1.67.0-13 [421 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libboost-test1.67-dev armhf 1.67.0-13 [491 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libboost-test-dev armhf 1.67.0.1+b1 [3960 B]
Get:68 http://172.17.0.1/private buster-staging/main armhf libfftw3-double3 armhf 3.3.8-2 [429 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libfftw3-single3 armhf 3.3.8-2 [633 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libfftw3-bin armhf 3.3.8-2 [43.6 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libfftw3-dev armhf 3.3.8-2 [1060 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.3.0-2+rpi1 [206 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libhdf5-103 armhf 1.10.4+repack-10 [1259 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-103 armhf 1.10.4+repack-10 [121 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.4+repack-10 [2221 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpugixml1v5 armhf 1.9-2 [75.6 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libpugixml-dev armhf 1.9-2 [93.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 64.9 MB in 18s (3607 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 15903 files and directories currently installed.)
Preparing to unpack .../libbsd0_0.9.1-2_armhf.deb ...
Unpacking libbsd0:armhf (0.9.1-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
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Unpacking libcc1-0:armhf (8.3.0-2+rpi1) over (8.2.0-21+rpi1) ...
Preparing to unpack .../gcc-8-base_8.3.0-2+rpi1_armhf.deb ...
Unpacking gcc-8-base:armhf (8.3.0-2+rpi1) over (8.2.0-21+rpi1) ...
Setting up gcc-8-base:armhf (8.3.0-2+rpi1) ...
(Reading database ... 16028 files and directories currently installed.)
Preparing to unpack .../libgcc1_1%3a8.3.0-2+rpi1_armhf.deb ...
Unpacking libgcc1:armhf (1:8.3.0-2+rpi1) over (1:8.2.0-21+rpi1) ...
Setting up libgcc1:armhf (1:8.3.0-2+rpi1) ...
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-11+rpi1 dpkg-dev_1.19.5 g++-8_8.3.0-2+rpi1 gcc-8_8.3.0-2+rpi1 libc6-dev_2.28-7+rpi1 libstdc++-8-dev_8.3.0-2+rpi1 libstdc++6_8.3.0-2+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~rc3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-11+rpi1 binutils-arm-linux-gnueabihf_2.31.1-11+rpi1 binutils-common_2.31.1-11+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20190110 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.3.0-2+rpi1 dash_0.5.10.2-5 dbus_1.12.12-1 dbus-user-session_1.12.12-1 debconf_1.5.70 debhelper_12.1.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.1-1 diffutils_1:3.7-2 dirmngr_2.2.12-1+rpi1 dmsetup_2:1.02.155-2 dpkg_1.19.5 dpkg-dev_1.19.5 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 e2fsprogs-l10n_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.2.0-2+rpi1 g++-8_8.3.0-2+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.3.0-2+rpi1 gcc-8-base_8.3.0-2+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-agent_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hdf5-helpers_1.10.4+repack-10 hostname_3.21 inetutils-ping_2:1.9.4-7 init-system-helpers_1.56+nmu1 initramfs-tools_0.133 initramfs-tools-core_0.133 intltool-debian_0.35.0+20060710.5 klibc-utils_2.0.6-1+rpi1 kmod_26-1 krb5-locales_1.17-1 libacl1_2.2.52-5 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapparmor1_2.13.2-7 libapt-pkg5.0_1.8.0~rc3 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libargon2-1_0~20171227-0.2 libasan5_8.3.0-2+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-2+rpi1 libattr1_1:2.4.47-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2+b1 libbinutils_2.31.1-11+rpi1 libblkid1_2.33.1-0.1 libboost-chrono1.67.0_1.67.0-13 libboost-program-options-dev_1.67.0.1+b1 libboost-program-options1.67-dev_1.67.0-13 libboost-program-options1.67.0_1.67.0-13 libboost-system1.67.0_1.67.0-13 libboost-test-dev_1.67.0.1+b1 libboost-test1.67-dev_1.67.0-13 libboost-test1.67.0_1.67.0-13 libboost-timer1.67.0_1.67.0-13 libboost1.67-dev_1.67.0-13 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-7+rpi1 libc-dev-bin_2.28-7+rpi1 libc6_2.28-7+rpi1 libc6-dev_2.28-7+rpi1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_8.3.0-2+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.1.0-1 libcryptsetup4_2:1.7.5-1 libcurl4_7.64.0-1 libdb5.3_5.3.28+dfsg1-0.3 libdbus-1-3_1.12.12-1 libdebconfclient0_0.247 libdevmapper1.02.1_2:1.02.155-2 libdpkg-perl_1.19.5 libdrm-common_2.4.97-1+rpi1 libdrm2_2.4.97-1+rpi1 libelf1_0.176-1 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfftw3-bin_3.3.8-2 libfftw3-dev_3.3.8-2 libfftw3-double3_3.3.8-2 libfftw3-single3_3.3.8-2 libfile-stripnondeterminism-perl_1.1.1-1 libgcc-8-dev_8.3.0-2+rpi1 libgcc1_1:8.3.0-2+rpi1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-3 libgdbm3_1.8.3-14 libgdbm6_1.18.1-3 libgfortran5_8.3.0-2+rpi1 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-2 libgomp1_8.3.0-2+rpi1 libgpg-error-l10n_1.35-1 libgpg-error0_1.35-1 libgssapi-krb5-2_1.17-1 libhdf5-103_1.10.4+repack-10 libhdf5-cpp-103_1.10.4+repack-10 libhdf5-dev_1.10.4+repack-10 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-3 libisl19_0.20-2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjson-c3_0.12.1+ds-2 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-1 libkeyutils1_1.6-2 libklibc_2.0.6-1+rpi1 libkmod2_26-1 libkrb5-3_1.17-1 libkrb5support0_1.17-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1 libldap-common_2.4.47+dfsg-3+rpi1 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses5_6.1+20181013-2 libncurses6_6.1+20181013-2 libncursesw5_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnghttp2-14_1.36.0-2 libnpth0_1.6-1 libnss-systemd_241-1+rpi1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam-systemd_241-1+rpi1 libpam0g_1.3.1-5 libpcre3_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libplymouth4_0.9.4-1 libpng16-16_1.6.36-5 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpugixml-dev_1.9-2 libpugixml1v5_1.9-2 libreadline7_7.0-5 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.26.0+fossilbc891ac6b-2 libss2_1.44.5-1 libssh2-1_1.8.0-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.3.0-2+rpi1 libstdc++6_8.3.0-2+rpi1 libsystemd0_241-1+rpi1 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtinfo5_6.1+20181013-2 libtinfo6_6.1+20181013-2 libtool_2.4.6-9 libubsan1_8.3.0-2+rpi1 libuchardet0_0.0.6-3 libudev1_241-1+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.33.1-0.1 libuv1_1.24.1-1 libxml2_2.9.4+dfsg1-7+b1 libzstd1_1.3.8+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.5-2 mawk_1.3.3-17 mount_2.33.1-0.1 multiarch-support_2.28-7+rpi1 nano_3.2-2 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-4 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ismrmrd-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_241-1+rpi1 systemd-sysv_241-1+rpi1 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-1 udev_241-1+rpi1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Jan 26 07:33:28 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ismrmrd_1.4.0-1.dsc
dpkg-source: info: extracting ismrmrd in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking ismrmrd_1.4.0.orig.tar.gz
dpkg-source: info: unpacking ismrmrd_1.4.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Disable-HTML-timestamps.patch
dpkg-source: info: applying Use-explicit-64-bit-shifts-in-testsuite.patch
dpkg-source: info: applying Fix-HDF5-detection-with-CMake-3.6.patch
dpkg-source: info: applying Add-support-for-multiarch.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-074e1798-fdf6-45d5-8ee6-ec47fc7faee7
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package ismrmrd
dpkg-buildpackage: info: source version 1.4.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DUSE_SYSTEM_PUGIXML=ON
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DUSE_SYSTEM_PUGIXML=ON ..
-- The C compiler identification is GNU 8.3.0
-- The CXX compiler identification is GNU 8.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.4") found components: C
-- Could NOT find Git (missing: GIT_EXECUTABLE)
Found system pugixml: /usr/include /usr/lib/arm-linux-gnueabihf/libpugixml.so
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Doxygen not found. Not able to build API documentation
-- sphinx-build not found. Not able to build HTML project documentation
Building info application
-- Boost version: 1.67.0
-- Found the following Boost libraries:
-- program_options
-- FFTW3 UNIX libraries: /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Found FFTW3: /usr/lib/arm-linux-gnueabihf/libfftw3f.so
FFTW3 and Boost Found... building utilities
-- Boost version: 1.67.0
-- Found the following Boost libraries:
-- unit_test_framework
CPACK_PACKAGING_INSTALL_PREFIX: /usr
-- Found CPack generators: DEB
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/ismrmrd.dir/build.make CMakeFiles/ismrmrd.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/ismrmrd.dir/DependInfo.cmake --color=
Scanning dependencies of target ismrmrd
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/ismrmrd.dir/build.make CMakeFiles/ismrmrd.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 9%] Building CXX object CMakeFiles/ismrmrd.dir/libsrc/xml.cpp.o
[ 9%] Building CXX object CMakeFiles/ismrmrd.dir/libsrc/ismrmrd.cpp.o
[ 9%] Building C object CMakeFiles/ismrmrd.dir/libsrc/ismrmrd.c.o
[ 12%] Building CXX object CMakeFiles/ismrmrd.dir/libsrc/meta.cpp.o
/usr/bin/c++ -D_FILE_OFFSET_BITS=64 -Dismrmrd_EXPORTS -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -fPIC -o CMakeFiles/ismrmrd.dir/libsrc/xml.cpp.o -c /<<PKGBUILDDIR>>/libsrc/xml.cpp
/usr/bin/cc -D_FILE_OFFSET_BITS=64 -Dismrmrd_EXPORTS -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -Wall -fPIC -o CMakeFiles/ismrmrd.dir/libsrc/ismrmrd.c.o -c /<<PKGBUILDDIR>>/libsrc/ismrmrd.c
/usr/bin/c++ -D_FILE_OFFSET_BITS=64 -Dismrmrd_EXPORTS -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -fPIC -o CMakeFiles/ismrmrd.dir/libsrc/ismrmrd.cpp.o -c /<<PKGBUILDDIR>>/libsrc/ismrmrd.cpp
/usr/bin/c++ -D_FILE_OFFSET_BITS=64 -Dismrmrd_EXPORTS -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -fPIC -o CMakeFiles/ismrmrd.dir/libsrc/meta.cpp.o -c /<<PKGBUILDDIR>>/libsrc/meta.cpp
[ 16%] Building CXX object CMakeFiles/ismrmrd.dir/libsrc/waveform.cpp.o
/usr/bin/c++ -D_FILE_OFFSET_BITS=64 -Dismrmrd_EXPORTS -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -fPIC -o CMakeFiles/ismrmrd.dir/libsrc/waveform.cpp.o -c /<<PKGBUILDDIR>>/libsrc/waveform.cpp
/<<PKGBUILDDIR>>/libsrc/ismrmrd.cpp:333:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/libsrc/ismrmrd.cpp:338:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/libsrc/ismrmrd.cpp:342:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/libsrc/ismrmrd.cpp:346:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/libsrc/ismrmrd.cpp:350:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/libsrc/ismrmrd.cpp:1061:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/libsrc/ismrmrd.cpp:1069:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/libsrc/ismrmrd.cpp:1073:2: warning: extra ';' [-Wpedantic]
};
^
In file included from /usr/include/c++/8/vector:69,
from /<<PKGBUILDDIR>>/include/ismrmrd/meta.h:14,
from /<<PKGBUILDDIR>>/libsrc/meta.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ISMRMRD::MetaValue&}; _Tp = ISMRMRD::MetaValue; _Alloc = std::allocator<ISMRMRD::MetaValue>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ISMRMRD::MetaValue>::iterator' {aka '__gnu_cxx::__normal_iterator<ISMRMRD::MetaValue*, std::vector<ISMRMRD::MetaValue> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/libsrc/waveform.cpp:91:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/libsrc/waveform.cpp:95:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/libsrc/waveform.cpp:99:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/libsrc/waveform.cpp:103:2: warning: extra ';' [-Wpedantic]
};
^
In file included from /usr/include/c++/8/vector:64,
from /<<PKGBUILDDIR>>/include/ismrmrd/meta.h:14,
from /<<PKGBUILDDIR>>/libsrc/meta.cpp:1:
/usr/include/c++/8/bits/stl_vector.h: In function 'void ISMRMRD::deserialize(const char*, ISMRMRD::MetaContainer&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ISMRMRD::MetaValue*, std::vector<ISMRMRD::MetaValue> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 19%] Building C object CMakeFiles/ismrmrd.dir/libsrc/waveform.c.o
/usr/bin/cc -D_FILE_OFFSET_BITS=64 -Dismrmrd_EXPORTS -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -Wall -fPIC -o CMakeFiles/ismrmrd.dir/libsrc/waveform.c.o -c /<<PKGBUILDDIR>>/libsrc/waveform.c
[ 22%] Building C object CMakeFiles/ismrmrd.dir/libsrc/dataset.c.o
/usr/bin/cc -D_FILE_OFFSET_BITS=64 -Dismrmrd_EXPORTS -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -Wall -fPIC -o CMakeFiles/ismrmrd.dir/libsrc/dataset.c.o -c /<<PKGBUILDDIR>>/libsrc/dataset.c
[ 25%] Building CXX object CMakeFiles/ismrmrd.dir/libsrc/dataset.cpp.o
/usr/bin/c++ -D_FILE_OFFSET_BITS=64 -Dismrmrd_EXPORTS -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -fPIC -o CMakeFiles/ismrmrd.dir/libsrc/dataset.cpp.o -c /<<PKGBUILDDIR>>/libsrc/dataset.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<PKGBUILDDIR>>/include/ismrmrd/xml.h:19,
from /<<PKGBUILDDIR>>/libsrc/xml.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ISMRMRD::UserParameterDouble&}; _Tp = ISMRMRD::UserParameterDouble; _Alloc = std::allocator<ISMRMRD::UserParameterDouble>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ISMRMRD::UserParameterDouble>::iterator' {aka '__gnu_cxx::__normal_iterator<ISMRMRD::UserParameterDouble*, std::vector<ISMRMRD::UserParameterDouble> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<PKGBUILDDIR>>/include/ismrmrd/xml.h:19,
from /<<PKGBUILDDIR>>/libsrc/xml.cpp:1:
/usr/include/c++/8/bits/stl_vector.h: In function 'std::vector<ISMRMRD::UserParameterDouble> ISMRMRD::parse_user_parameter_double(pugi::xml_node&, const char*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ISMRMRD::UserParameterDouble*, std::vector<ISMRMRD::UserParameterDouble> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 29%] Linking CXX shared library libismrmrd.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/ismrmrd.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libismrmrd.so.1.4 -o libismrmrd.so.1.4.0 CMakeFiles/ismrmrd.dir/libsrc/ismrmrd.c.o CMakeFiles/ismrmrd.dir/libsrc/ismrmrd.cpp.o CMakeFiles/ismrmrd.dir/libsrc/xml.cpp.o CMakeFiles/ismrmrd.dir/libsrc/meta.cpp.o CMakeFiles/ismrmrd.dir/libsrc/waveform.cpp.o CMakeFiles/ismrmrd.dir/libsrc/waveform.c.o CMakeFiles/ismrmrd.dir/libsrc/dataset.c.o CMakeFiles/ismrmrd.dir/libsrc/dataset.cpp.o -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/hdf5/serial: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lpugixml -lpugixml
/usr/bin/cmake -E cmake_symlink_library libismrmrd.so.1.4.0 libismrmrd.so.1.4 libismrmrd.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 29%] Built target ismrmrd
make -f utilities/CMakeFiles/ismrmrd_info.dir/build.make utilities/CMakeFiles/ismrmrd_info.dir/depend
make -f utilities/CMakeFiles/ismrmrd_read_timing_test.dir/build.make utilities/CMakeFiles/ismrmrd_read_timing_test.dir/depend
make -f utilities/CMakeFiles/ismrmrd_test_xml.dir/build.make utilities/CMakeFiles/ismrmrd_test_xml.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/utilities /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities/CMakeFiles/ismrmrd_info.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f utilities/CMakeFiles/ismrmrd_generate_cartesian_shepp_logan.dir/build.make utilities/CMakeFiles/ismrmrd_generate_cartesian_shepp_logan.dir/depend
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/utilities /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities/CMakeFiles/ismrmrd_read_timing_test.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/utilities /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities/CMakeFiles/ismrmrd_test_xml.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/utilities /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities/CMakeFiles/ismrmrd_generate_cartesian_shepp_logan.dir/DependInfo.cmake --color=
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make -f utilities/CMakeFiles/ismrmrd_info.dir/build.make utilities/CMakeFiles/ismrmrd_info.dir/build
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Scanning dependencies of target ismrmrd_read_timing_test
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[ 32%] Building CXX object utilities/CMakeFiles/ismrmrd_info.dir/ismrmrd_info.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/libsrc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/ismrmrd_info.dir/ismrmrd_info.cpp.o -c /<<PKGBUILDDIR>>/utilities/ismrmrd_info.cpp
[ 38%] Building CXX object utilities/CMakeFiles/ismrmrd_read_timing_test.dir/read_timing_test.cpp.o
[ 38%] Building CXX object utilities/CMakeFiles/ismrmrd_test_xml.dir/ismrmrd_test_xml.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/libsrc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/ismrmrd_test_xml.dir/ismrmrd_test_xml.cpp.o -c /<<PKGBUILDDIR>>/utilities/ismrmrd_test_xml.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/libsrc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/ismrmrd_read_timing_test.dir/read_timing_test.cpp.o -c /<<PKGBUILDDIR>>/utilities/read_timing_test.cpp
[ 41%] Building CXX object utilities/CMakeFiles/ismrmrd_generate_cartesian_shepp_logan.dir/generate_cartesian_shepp_logan.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/libsrc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/ismrmrd_generate_cartesian_shepp_logan.dir/generate_cartesian_shepp_logan.cpp.o -c /<<PKGBUILDDIR>>/utilities/generate_cartesian_shepp_logan.cpp
[ 45%] Linking CXX executable ismrmrd_info
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/ismrmrd_info.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/ismrmrd_info.dir/ismrmrd_info.cpp.o -o ismrmrd_info -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:/usr/lib/arm-linux-gnueabihf/hdf5/serial: ../libismrmrd.so.1.4.0 /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lpugixml
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[ 48%] Building CXX object utilities/CMakeFiles/ismrmrd_test_xml.dir/__/libsrc/pugixml.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/libsrc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/ismrmrd_test_xml.dir/__/libsrc/pugixml.cpp.o -c /<<PKGBUILDDIR>>/libsrc/pugixml.cpp
[ 51%] Linking CXX executable ismrmrd_read_timing_test
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/ismrmrd_read_timing_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/ismrmrd_read_timing_test.dir/read_timing_test.cpp.o -o ismrmrd_read_timing_test -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:/usr/lib/arm-linux-gnueabihf/hdf5/serial: ../libismrmrd.so.1.4.0 /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lpugixml
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 51%] Built target ismrmrd_read_timing_test
[ 54%] Building CXX object utilities/CMakeFiles/ismrmrd_generate_cartesian_shepp_logan.dir/ismrmrd_phantom.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/libsrc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/ismrmrd_generate_cartesian_shepp_logan.dir/ismrmrd_phantom.cpp.o -c /<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.cpp
make -f utilities/CMakeFiles/ismrmrd_recon_cartesian_2d.dir/build.make utilities/CMakeFiles/ismrmrd_recon_cartesian_2d.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/utilities /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities/CMakeFiles/ismrmrd_recon_cartesian_2d.dir/DependInfo.cmake --color=
Scanning dependencies of target ismrmrd_recon_cartesian_2d
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[ 58%] Building CXX object utilities/CMakeFiles/ismrmrd_recon_cartesian_2d.dir/recon_cartesian_2d.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/libsrc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/ismrmrd_recon_cartesian_2d.dir/recon_cartesian_2d.cpp.o -c /<<PKGBUILDDIR>>/utilities/recon_cartesian_2d.cpp
In file included from /<<PKGBUILDDIR>>/utilities/generate_cartesian_shepp_logan.cpp:15:
/<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.h:68:2: warning: extra ';' [-Wpedantic]
};
^
In file included from /<<PKGBUILDDIR>>/utilities/generate_cartesian_shepp_logan.cpp:16:
/<<PKGBUILDDIR>>/utilities/ismrmrd_fftw.h:79:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/utilities/recon_cartesian_2d.cpp: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/utilities/recon_cartesian_2d.cpp:97:72: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct std::complex<float>'; use assignment or value-initialization instead [-Wclass-memaccess]
memset(buffer.getDataPtr(), 0, sizeof(complex_float_t)*nX*nY*nCoils);
^
In file included from /<<PKGBUILDDIR>>/include/ismrmrd/ismrmrd.h:40,
from /<<PKGBUILDDIR>>/utilities/recon_cartesian_2d.cpp:10:
/usr/include/c++/8/complex:1072:12: note: 'struct std::complex<float>' declared here
struct complex<float>
^~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.cpp:8:
/<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.h:68:2: warning: extra ';' [-Wpedantic]
};
^
/<<PKGBUILDDIR>>/utilities/generate_cartesian_shepp_logan.cpp: In function 'int main(int, char**)':
/<<PKGBUILDDIR>>/utilities/generate_cartesian_shepp_logan.cpp:81:63: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct std::complex<float>'; use assignment or value-initialization instead [-Wclass-memaccess]
memset(coil_images.getDataPtr(), 0, coil_images.getDataSize());
^
In file included from /<<PKGBUILDDIR>>/include/ismrmrd/ismrmrd.h:40,
from /<<PKGBUILDDIR>>/utilities/generate_cartesian_shepp_logan.cpp:11:
/usr/include/c++/8/complex:1072:12: note: 'struct std::complex<float>' declared here
struct complex<float>
^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.cpp: In function 'boost::shared_ptr<ISMRMRD::NDArray<std::complex<float> > > ISMRMRD::phantom(std::vector<ISMRMRD::PhantomEllipse>&, unsigned int)':
/<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.cpp:20:52: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct std::complex<float>'; use assignment or value-initialization instead [-Wclass-memaccess]
memset(out->getDataPtr(), 0, out->getDataSize());
^
In file included from /<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.h:10,
from /<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.cpp:8:
/usr/include/c++/8/complex:1072:12: note: 'struct std::complex<float>' declared here
struct complex<float>
^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.cpp: In function 'boost::shared_ptr<ISMRMRD::NDArray<std::complex<float> > > ISMRMRD::generate_birdcage_sensititivies(unsigned int, unsigned int, float)':
/<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.cpp:84:52: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct std::complex<float>'; use assignment or value-initialization instead [-Wclass-memaccess]
memset(out->getDataPtr(), 0, out->getDataSize());
^
In file included from /<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.h:10,
from /<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.cpp:8:
/usr/include/c++/8/complex:1072:12: note: 'struct std::complex<float>' declared here
struct complex<float>
^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.cpp: At global scope:
/<<PKGBUILDDIR>>/utilities/ismrmrd_phantom.cpp:140:2: warning: extra ';' [-Wpedantic]
};
^
[ 61%] Linking CXX executable ismrmrd_recon_cartesian_2d
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/ismrmrd_recon_cartesian_2d.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/ismrmrd_recon_cartesian_2d.dir/recon_cartesian_2d.cpp.o -o ismrmrd_recon_cartesian_2d -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:/usr/lib/arm-linux-gnueabihf/hdf5/serial: ../libismrmrd.so.1.4.0 -lboost_program_options -lfftw3f /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lpugixml
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make -f examples/c/CMakeFiles/ismrmrd_c_example.dir/build.make examples/c/CMakeFiles/ismrmrd_c_example.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/examples/c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/c/CMakeFiles/ismrmrd_c_example.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 64%] Building C object examples/c/CMakeFiles/ismrmrd_c_example.dir/main.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/c && /usr/bin/cc -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I"/<<PKGBUILDDIR>>/include /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -Wall -o CMakeFiles/ismrmrd_c_example.dir/main.c.o -c /<<PKGBUILDDIR>>/examples/c/main.c
[ 67%] Linking C executable ismrmrd_c_example
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/c && /usr/bin/cmake -E cmake_link_script CMakeFiles/ismrmrd_c_example.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -Wall -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/ismrmrd_c_example.dir/main.c.o -o ismrmrd_c_example -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:/usr/lib/arm-linux-gnueabihf/hdf5/serial: ../../libismrmrd.so.1.4.0 /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lpugixml
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/test_ismrmrd.dir/test_main.cpp.o -c /<<PKGBUILDDIR>>/tests/test_main.cpp
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/test_ismrmrd.dir/test_acquisitions.cpp.o -c /<<PKGBUILDDIR>>/tests/test_acquisitions.cpp
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/ismrmrd_generate_cartesian_shepp_logan.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/ismrmrd_generate_cartesian_shepp_logan.dir/generate_cartesian_shepp_logan.cpp.o CMakeFiles/ismrmrd_generate_cartesian_shepp_logan.dir/ismrmrd_phantom.cpp.o -o ismrmrd_generate_cartesian_shepp_logan -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:/usr/lib/arm-linux-gnueabihf/hdf5/serial: ../libismrmrd.so.1.4.0 -lboost_program_options -lfftw3f /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lpugixml
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/test_ismrmrd.dir/test_ndarray.cpp.o -c /<<PKGBUILDDIR>>/tests/test_ndarray.cpp
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/ismrmrd_test_xml.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/ismrmrd_test_xml.dir/ismrmrd_test_xml.cpp.o CMakeFiles/ismrmrd_test_xml.dir/__/libsrc/pugixml.cpp.o -o ismrmrd_test_xml -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:/usr/lib/arm-linux-gnueabihf/hdf5/serial: ../libismrmrd.so.1.4.0 /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lpugixml
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/test_ismrmrd.dir/test_flags.cpp.o -c /<<PKGBUILDDIR>>/tests/test_flags.cpp
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[ 96%] Building CXX object tests/CMakeFiles/test_ismrmrd.dir/test_quaternions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -o CMakeFiles/test_ismrmrd.dir/test_quaternions.cpp.o -c /<<PKGBUILDDIR>>/tests/test_quaternions.cpp
[100%] Linking CXX executable test_ismrmrd
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_ismrmrd.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/test_ismrmrd.dir/test_main.cpp.o CMakeFiles/test_ismrmrd.dir/test_acquisitions.cpp.o CMakeFiles/test_ismrmrd.dir/test_images.cpp.o CMakeFiles/test_ismrmrd.dir/test_ndarray.cpp.o CMakeFiles/test_ismrmrd.dir/test_flags.cpp.o CMakeFiles/test_ismrmrd.dir/test_channels.cpp.o CMakeFiles/test_ismrmrd.dir/test_quaternions.cpp.o -o test_ismrmrd -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:/usr/lib/arm-linux-gnueabihf/hdf5/serial ../libismrmrd.so.1.4.0 -lboost_unit_test_framework /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lpugixml
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dh_auto_test -a
cd obj-arm-linux-gnueabihf && make -j4 check ARGS\+=-j4
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make -f CMakeFiles/ismrmrd.dir/build.make CMakeFiles/ismrmrd.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/ismrmrd.dir/DependInfo.cmake --color=
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[100%] Built target test_ismrmrd
make -f tests/CMakeFiles/check.dir/build.make tests/CMakeFiles/check.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/check.dir/DependInfo.cmake --color=
Scanning dependencies of target check
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/check.dir/build.make tests/CMakeFiles/check.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && ./test_ismrmrd
Running 25 test cases...
[1;34;49mEntering test module "ISMRMRD Unit Tests"
[0;39;49m[1;34;49m/<<PKGBUILDDIR>>/tests/test_acquisitions.cpp(7): Entering test suite "AcquisitionsTest"
[0;39;49m[1;34;49m/<<PKGBUILDDIR>>/tests/test_acquisitions.cpp(11): Entering test case "test_acquisition_header"
[0;39;49munknown location(0): [4;31;49mfatal error: in "AcquisitionsTest/test_acquisition_header": memory access violation at address: 0xffca5a62: invalid address alignment[0;39;49m
/<<PKGBUILDDIR>>/tests/test_acquisitions.cpp(130): [1;36;49mlast checkpoint[0;39;49m
[1;36;49mTest is aborted[0;39;49m
[1;34;49m/<<PKGBUILDDIR>>/tests/test_acquisitions.cpp(11): Leaving test case "test_acquisition_header"; testing time: 10630us
[0;39;49m[1;36;49mTest is aborted[0;39;49m
[1;34;49m/<<PKGBUILDDIR>>/tests/test_acquisitions.cpp(7): Leaving test suite "AcquisitionsTest"; testing time: 10715us
[0;39;49m[1;36;49mTest is aborted[0;39;49m
[1;34;49mLeaving test module "ISMRMRD Unit Tests"; testing time: 10807us
[0;39;49m
[1;31;49m*** 1 failure is detected in the test module "ISMRMRD Unit Tests"
[0;39;49mmake[4]: *** [tests/CMakeFiles/check.dir/build.make:60: tests/CMakeFiles/check] Error 201
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: *** [CMakeFiles/Makefile2:485: tests/CMakeFiles/check.dir/all] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: *** [CMakeFiles/Makefile2:492: tests/CMakeFiles/check.dir/rule] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[1]: *** [Makefile:306: check] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test: cd obj-arm-linux-gnueabihf && make -j4 check ARGS\+=-j4 returned exit code 2
make: *** [debian/rules:14: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2019-03-16T00:42:33Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 37564
Build-Time: 53
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 349
Job: ismrmrd_1.4.0-1
Machine Architecture: armhf
Package: ismrmrd
Package-Time: 419
Source-Version: 1.4.0-1
Space: 37564
Status: attempted
Version: 1.4.0-1
--------------------------------------------------------------------------------
Finished at 2019-03-16T00:42:33Z
Build needed 00:06:59, 37564k disk space