illustrate →
0.0+git20200923.217db48-2 →
armhf → 2021-11-23 02:25:10
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| illustrate 0.0+git20200923.217db48-2 (armhf) Tue, 23 Nov 2021 02:18:27 +0000 |
+==============================================================================+
Package: illustrate
Version: 0.0+git20200923.217db48-2
Source Version: 0.0+git20200923.217db48-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-d708b8a6-58d6-45cf-8869-407d769a30b4' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/illustrate-wHCfnU/resolver-2x547x' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.5 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.5 MB]
Fetched 26.0 MB in 10s (2685 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'illustrate' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/illustrate.git
Please use:
git clone https://salsa.debian.org/med-team/illustrate.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 88.5 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main illustrate 0.0+git20200923.217db48-2 (dsc) [2126 B]
Get:2 http://172.17.0.1/private bookworm-staging/main illustrate 0.0+git20200923.217db48-2 (tar) [83.1 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main illustrate 0.0+git20200923.217db48-2 (diff) [3340 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/illustrate-wHCfnU/illustrate-0.0+git20200923.217db48' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/illustrate-wHCfnU' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), gfortran, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), gfortran, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [458 B]
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cpp cpp-11 debhelper
dh-autoreconf dh-strip-nondeterminism dwz file g++ g++-11 gcc gcc-11 gettext
gettext-base gfortran gfortran-11 groff-base intltool-debian
libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgcc-11-dev libgfortran-11-dev
libgfortran5 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libstdc++-11-dev libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-11-locales dh-make
gcc-11-doc gcc-multilib manpages-dev flex bison gdb gcc-doc gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc
libcoarrays-dev groff libstdc++-11-doc libtool-doc gcj-jdk m4-doc apparmor
less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cpp-11 debhelper
dh-autoreconf dh-strip-nondeterminism dwz file g++-11 gcc-11 gettext
gettext-base gfortran gfortran-11 groff-base intltool-debian
libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgcc-11-dev libgfortran-11-dev
libgfortran5 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libstdc++-11-dev libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
po-debconf sbuild-build-depends-main-dummy sensible-utils
The following packages will be upgraded:
cpp g++ gcc
3 upgraded, 41 newly installed, 0 to remove and 31 not upgraded.
Need to get 201 MB of archives.
After this operation, 656 MB of additional disk space will be used.
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Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.4-1 [31.6 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf cpp-11 armhf 11.2.0-10+rpi1 [42.3 MB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.2.0-10+rpi1 [697 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf gcc-11 armhf 11.2.0-10+rpi1 [48.3 MB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf g++ armhf 4:11.2.0-2+rpi1 [1636 B]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf gcc armhf 4:11.2.0-2+rpi1 [5192 B]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.2.0-10+rpi1 [1956 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf g++-11 armhf 11.2.0-10+rpi1 [46.1 MB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf cpp armhf 4:11.2.0-2+rpi1 [20.1 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-2 [15.5 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-10+rpi1 [234 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.2.0-10+rpi1 [280 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf gfortran-11 armhf 11.2.0-10+rpi1 [43.8 MB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:11.2.0-2+rpi1 [1428 B]
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update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
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Setting up gettext (0.21-4) ...
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Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up gfortran-11 (11.2.0-10+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up libstdc++-11-dev:armhf (11.2.0-10+rpi1) ...
Setting up dh-strip-nondeterminism (1.12.0-2) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up g++-11 (11.2.0-10+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:11.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up dh-autoreconf (20) ...
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Setting up debhelper (13.5.2) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 g++-11_11.2.0-10+rpi1 gcc-10_10.3.0-11+rpi1 gcc-11_11.2.0-10+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++-11-dev_11.2.0-10+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.9-2+rpi1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:11.2.0-2+rpi1 cpp-10_10.3.0-11+rpi1 cpp-11_11.2.0-10+rpi1 dash_0.5.11+git20210903+057cd650a4ed-1 debconf_1.5.78 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2+rpi1 g++-10_10.3.0-11+rpi1 g++-11_11.2.0-10+rpi1 gcc_4:11.2.0-2+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11_11.2.0-10+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran_4:11.2.0-2+rpi1 gfortran-11_11.2.0-10+rpi1 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-10+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-4 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-2 libgcc-10-dev_10.3.0-11+rpi1 libgcc-11-dev_11.2.0-10+rpi1 libgcc-s1_11.2.0-10+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran-11-dev_11.2.0-10+rpi1 libgfortran5_11.2.0-10+rpi1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.4-1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++-11-dev_11.2.0-10+rpi1 libstdc++6_11.2.0-10+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.5-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_249.5-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.9-2+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: illustrate
Binary: illustrate
Architecture: any
Version: 0.0+git20200923.217db48-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: https://github.com/ccsb-scripps/Illustrate
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/illustrate
Vcs-Git: https://salsa.debian.org/med-team/illustrate.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), gfortran
Package-List:
illustrate deb science optional arch=any
Checksums-Sha1:
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Checksums-Sha256:
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Files:
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14672a0277e3c910095667b53ce60b66 3340 illustrate_0.0+git20200923.217db48-2.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.4Z1IqGKl/trustedkeys.kbx': General error
gpgv: Signature made Thu Oct 14 11:16:33 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./illustrate_0.0+git20200923.217db48-2.dsc
dpkg-source: info: extracting illustrate in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking illustrate_0.0+git20200923.217db48.orig.tar.xz
dpkg-source: info: unpacking illustrate_0.0+git20200923.217db48-2.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=359bbe4d259442eb9d8f94db1683c24a
JOURNAL_STREAM=8:21869
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-d708b8a6-58d6-45cf-8869-407d769a30b4
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c115379
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package illustrate
dpkg-buildpackage: info: source version 0.0+git20200923.217db48-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -f illustrate 2hhb.pnm opacity.pnm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gfortran -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -o illustrate illustrate.f -Wl,-z,relro -Wl,-z,now
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
./illustrate < debian/illustrate_sample_cmd.txt
atom descriptors: 15
type, color, radius 1 0.500000000 0.500000000 0.500000000 0.00000000
type, color, radius 2 0.500000000 0.500000000 0.500000000 0.00000000
type, color, radius 3 0.500000000 0.500000000 0.500000000 0.00000000
type, color, radius 4 1.00000000 0.600000024 0.600000024 1.60000002
type, color, radius 5 1.00000000 0.500000000 0.500000000 1.79999995
type, color, radius 6 1.00000000 0.500000000 0.500000000 1.50000000
type, color, radius 7 1.00000000 0.600000024 0.600000024 1.60000002
type, color, radius 8 1.00000000 0.500000000 0.500000000 1.79999995
type, color, radius 9 1.00000000 0.500000000 0.500000000 1.50000000
type, color, radius 10 1.00000000 0.800000012 0.600000024 1.60000002
type, color, radius 11 1.00000000 0.699999988 0.500000000 1.79999995
type, color, radius 12 1.00000000 0.699999988 0.500000000 1.50000000
type, color, radius 13 1.00000000 0.800000012 0.00000000 1.79999995
type, color, radius 14 1.00000000 0.300000012 0.300000012 1.60000002
type, color, radius 15 1.00000000 0.100000001 0.100000001 1.50000000
Number of BIOMT 0
Chains in Biological Assembly
1 A
2 B
3 C
4 D
Number of BIOMT 1
BIOMAT 1 1.00000000 0.00000000 0.00000000 0.00000000
BIOMAT 1 0.00000000 1.00000000 0.00000000 0.00000000
BIOMAT 1 0.00000000 0.00000000 1.00000000 0.00000000
atoms read: 4556 from: 2hhb.pdb
number of subunits: 8
translation vector : 0.00000000 0.00000000 0.00000000
scale factor : 12.0000000
z rotation : 90.0000000
background inten. : 1.00 1.00 1.00
fog intensity : 1.00 1.00 1.00
upper fog percent : 100.00
lower fog percent : 100.00
draw conical shadow
input value for image size -30 -30
illustration parameters
l parameters: 3.00000000 10.0000000
g parameters: 3.00000000 8.00000000
*begin calculation*
min coordinates : -26.4710026 -34.0060005 -29.9990005
max coordinates : 27.4800034 34.3030014 29.9880009
automating centering
centering vector : -0.504499435 -0.148502350 -52.5879974
applying autosizing
x and y frame width: 30 30
xsize and ysize: 750 922
output pnm filename: 2hhb.pnm
0 spheres added of type: 1
0 spheres added of type: 2
0 spheres added of type: 3
685 spheres added of type: 4
3 spheres added of type: 5
381 spheres added of type: 6
685 spheres added of type: 7
3 spheres added of type: 8
381 spheres added of type: 9
1448 spheres added of type: 10
6 spheres added of type: 11
792 spheres added of type: 12
4 spheres added of type: 13
136 spheres added of type: 14
32 spheres added of type: 15
shading maps written into depth buffer
zpix_min,zpix_max -818.827271 -253.199951
Pixel processing beginning
99999999999999999999999999999999999999999999999
99999999999999109884999990095999999999999999999
99999999999999995899999999989887799999999999999
99999999999968994878899999768789976999999999999
99999999992798889999693957746519995999999999999
99999999967697998982898045194898995999999999999
99999999907698999989989986889899688890999999999
99999990778888980888989957688988888888999999999
99999977776708981729999979967888777788828999999
99999288869898870988588809978807089656788999999
99990998799977868929888789878869997859967809999
99976499709898998979899889577059999789978879999
99979888889988990887839899007748699889978709999
99999989987899867881880888885769997899668999999
99999099987999989998988986900549998905678999999
99997588762888886998089869998969989989378999999
99997687086899889896269887899988988998567879999
99999909989999998899889988888999498890895999999
99999904638900996999787908989958798899816999999
99995885499998999998994639881989598888561699999
99999886099989999099998800448728885886789978099
99999884899899999696969995898178889908898538999
99999877999978154776599998909998888308908999999
99998987763296668870007999989906759890968979999
99968846367760650998088897888878999899898709999
99999667688887756998099995890989987491078879999
99999878778088987488899989998970078867578989999
99999789798509998298485788479957888888889999999
99999999888888882665446889988772888086832999999
99999999979998958862059988977268899967899999999
99999999989998989986769948908897884578999999999
99999999908999989906778808978898978657999999999
99999999999999556876899999787909959799999999999
99999999999056588788999999188568986799999999999
99999999999999887998999999997977999999999999999
99999999999999999999999999999999999999999999999
99999999999999999999999999999999999999999999999
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_installdirs -a
dh_auto_install --destdir=debian/illustrate/ -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/illustrate/usr/bin/illustrate was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'illustrate' in '../illustrate_0.0+git20200923.217db48-2_armhf.deb'.
dpkg-deb: building package 'illustrate-dbgsym' in '../illustrate-dbgsym_0.0+git20200923.217db48-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../illustrate_0.0+git20200923.217db48-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-11-23T02:25:05Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
illustrate_0.0+git20200923.217db48-2_armhf.changes:
---------------------------------------------------
Format: 1.8
Date: Thu, 14 Oct 2021 16:44:24 +0530
Source: illustrate
Binary: illustrate illustrate-dbgsym
Architecture: armhf
Version: 0.0+git20200923.217db48-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
illustrate - cartoonish representations of large biological molecules
Changes:
illustrate (0.0+git20200923.217db48-2) unstable; urgency=medium
.
* Team upload.
* Source-only upload.
Checksums-Sha1:
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Files:
c5dba6c3f0c686c7606af4773b1114e7 13604 debug optional illustrate-dbgsym_0.0+git20200923.217db48-2_armhf.deb
207f5dcd52dce228cf14e5d0219a7913 5308 science optional illustrate_0.0+git20200923.217db48-2_armhf.buildinfo
5eaf7b67acaa56cfd15d2fe0b3d41128 13484 science optional illustrate_0.0+git20200923.217db48-2_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: illustrate
Binary: illustrate illustrate-dbgsym
Architecture: armhf
Version: 0.0+git20200923.217db48-2
Checksums-Md5:
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Checksums-Sha1:
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Checksums-Sha256:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Tue, 23 Nov 2021 02:25:04 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.1),
autopoint (= 0.21-4),
autotools-dev (= 20180224.1+nmu1),
base-files (= 12+rpi1),
base-passwd (= 3.5.52),
bash (= 5.1-3),
binutils (= 2.37-5+rpi1),
binutils-arm-linux-gnueabihf (= 2.37-5+rpi1),
binutils-common (= 2.37-5+rpi1),
bsdextrautils (= 2.37.2-4),
bsdutils (= 1:2.37.2-4),
build-essential (= 12.9),
bzip2 (= 1.0.8-4),
coreutils (= 8.32-4),
cpp (= 4:11.2.0-2+rpi1),
cpp-10 (= 10.3.0-11+rpi1),
cpp-11 (= 11.2.0-10+rpi1),
dash (= 0.5.11+git20210903+057cd650a4ed-1),
debconf (= 1.5.78),
debhelper (= 13.5.2),
debianutils (= 4.11.2),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.12.0-2),
diffutils (= 1:3.7-5),
dpkg (= 1.20.9+rpi1),
dpkg-dev (= 1.20.9+rpi1),
dwz (= 0.14-1),
file (= 1:5.41-2),
findutils (= 4.8.0-1),
g++ (= 4:11.2.0-2+rpi1),
g++-11 (= 11.2.0-10+rpi1),
gcc (= 4:11.2.0-2+rpi1),
gcc-10 (= 10.3.0-11+rpi1),
gcc-10-base (= 10.3.0-11+rpi1),
gcc-11 (= 11.2.0-10+rpi1),
gcc-11-base (= 11.2.0-10+rpi1),
gettext (= 0.21-4),
gettext-base (= 0.21-4),
gfortran (= 4:11.2.0-2+rpi1),
gfortran-11 (= 11.2.0-10+rpi1),
grep (= 3.7-1),
groff-base (= 1.22.4-7),
gzip (= 1.10-4),
hostname (= 3.23),
init-system-helpers (= 1.60),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.3.1-1),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 11.2.0-10+rpi1),
libatomic1 (= 11.2.0-10+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.6-1),
libaudit1 (= 1:3.0.6-1),
libbinutils (= 2.37-5+rpi1),
libblkid1 (= 2.37.2-4),
libbz2-1.0 (= 1.0.8-4),
libc-bin (= 2.32-4+rpi1),
libc-dev-bin (= 2.32-4+rpi1),
libc6 (= 2.32-4+rpi1),
libc6-dev (= 2.32-4+rpi1),
libcap-ng0 (= 0.7.9-2.2+b1),
libcap2 (= 1:2.44-1),
libcc1-0 (= 11.2.0-10+rpi1),
libcom-err2 (= 1.46.4-1),
libcrypt-dev (= 1:4.4.25-2),
libcrypt1 (= 1:4.4.25-2),
libctf-nobfd0 (= 2.37-5+rpi1),
libctf0 (= 2.37-5+rpi1),
libdb5.3 (= 5.3.28+dfsg1-0.8),
libdebconfclient0 (= 0.260),
libdebhelper-perl (= 13.5.2),
libdpkg-perl (= 1.20.9+rpi1),
libelf1 (= 0.185-2),
libfile-stripnondeterminism-perl (= 1.12.0-2),
libgcc-10-dev (= 10.3.0-11+rpi1),
libgcc-11-dev (= 11.2.0-10+rpi1),
libgcc-s1 (= 11.2.0-10+rpi1),
libgcrypt20 (= 1.9.4-3),
libgdbm-compat4 (= 1.22-1),
libgdbm6 (= 1.22-1),
libgfortran-11-dev (= 11.2.0-10+rpi1),
libgfortran5 (= 11.2.0-10+rpi1),
libgmp10 (= 2:6.2.1+dfsg-2),
libgomp1 (= 11.2.0-10+rpi1),
libgpg-error0 (= 1.42-3),
libgssapi-krb5-2 (= 1.18.3-7),
libicu67 (= 67.1-7),
libisl23 (= 0.24-2),
libk5crypto3 (= 1.18.3-7),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.18.3-7),
libkrb5support0 (= 1.18.3-7),
liblz4-1 (= 1.9.3-2),
liblzma5 (= 5.2.5-2),
libmagic-mgc (= 1:5.41-2),
libmagic1 (= 1:5.41-2),
libmount1 (= 2.37.2-4),
libmpc3 (= 1.2.1-1),
libmpfr6 (= 4.1.0-3),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libpam-modules (= 1.4.0-10),
libpam-modules-bin (= 1.4.0-10),
libpam-runtime (= 1.4.0-10),
libpam0g (= 1.4.0-10),
libpcre2-8-0 (= 10.36-2),
libpcre3 (= 2:8.39-13),
libperl5.32 (= 5.32.1-6),
libpipeline1 (= 1.5.4-1),
libseccomp2 (= 2.5.2-2+rpi1),
libselinux1 (= 3.1-3),
libsigsegv2 (= 2.13-1),
libsmartcols1 (= 2.37.2-4),
libssl1.1 (= 1.1.1l-1),
libstdc++-11-dev (= 11.2.0-10+rpi1),
libstdc++6 (= 11.2.0-10+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 249.5-1+rpi1),
libtinfo6 (= 6.2+20201114-4),
libtirpc-common (= 1.3.2-2),
libtirpc-dev (= 1.3.2-2),
libtirpc3 (= 1.3.2-2),
libtool (= 2.4.6-15),
libubsan1 (= 11.2.0-10+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 249.5-1+rpi1),
libunistring2 (= 0.9.10-6),
libuuid1 (= 2.37.2-4),
libxml2 (= 2.9.12+dfsg-5),
libzstd1 (= 1.4.8+dfsg-3+rpi1),
linux-libc-dev (= 5.14.9-2+rpi1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4.1),
man-db (= 2.9.4-2),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.2+20201114-4),
ncurses-bin (= 6.2+20201114-4),
patch (= 2.7.6-7),
perl (= 5.32.1-6),
perl-base (= 5.32.1-6),
perl-modules-5.32 (= 5.32.1-6),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sysvinit-utils (= 3.00-1),
tar (= 1.34+dfsg-1),
util-linux (= 2.37.2-4),
xz-utils (= 5.2.5-2),
zlib1g (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1634210064"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
illustrate-dbgsym_0.0+git20200923.217db48-2_armhf.deb
-----------------------------------------------------
new Debian package, version 2.0.
size 13604 bytes: control archive=552 bytes.
417 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: illustrate-dbgsym
Source: illustrate
Version: 0.0+git20200923.217db48-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 27
Depends: illustrate (= 0.0+git20200923.217db48-2)
Section: debug
Priority: optional
Description: debug symbols for illustrate
Build-Ids: 1cf1247c1020b5ebc825a21df320831387f42d36
drwxr-xr-x root/root 0 2021-10-14 11:14 ./
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/lib/debug/.build-id/1c/
-rw-r--r-- root/root 17096 2021-10-14 11:14 ./usr/lib/debug/.build-id/1c/f1247c1020b5ebc825a21df320831387f42d36.debug
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/share/
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-10-14 11:14 ./usr/share/doc/illustrate-dbgsym -> illustrate
illustrate_0.0+git20200923.217db48-2_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 13484 bytes: control archive=820 bytes.
623 bytes, 15 lines control
274 bytes, 4 lines md5sums
Package: illustrate
Version: 0.0+git20200923.217db48-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 38
Depends: libc6 (>= 2.4), libgfortran5 (>= 8)
Recommends: netpbm
Section: science
Priority: optional
Homepage: https://github.com/ccsb-scripps/Illustrate
Description: cartoonish representations of large biological molecules
This package provides a binary to transform PDF-formatted proteins into
simplified but instructive graphics. The software has been used for
the Protein-of-the-month's biomolecular illustrations for the past 20
years.
drwxr-xr-x root/root 0 2021-10-14 11:14 ./
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/bin/
-rwxr-xr-x root/root 26100 2021-10-14 11:14 ./usr/bin/illustrate
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/share/
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/share/doc/illustrate/
-rw-r--r-- root/root 254 2021-10-14 11:14 ./usr/share/doc/illustrate/changelog.Debian.gz
-rw-r--r-- root/root 993 2021-10-14 11:13 ./usr/share/doc/illustrate/copyright
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/share/lintian/
drwxr-xr-x root/root 0 2021-10-14 11:14 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 118 2021-10-14 11:13 ./usr/share/lintian/overrides/illustrate
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 17188
Build-Time: 25
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 349
Job: illustrate_0.0+git20200923.217db48-2
Machine Architecture: armhf
Package: illustrate
Package-Time: 398
Source-Version: 0.0+git20200923.217db48-2
Space: 17188
Status: successful
Version: 0.0+git20200923.217db48-2
--------------------------------------------------------------------------------
Finished at 2021-11-23T02:25:05Z
Build needed 00:06:38, 17188k disk space