htslib →
1.3.1-1 →
armhf → 2016-05-01 22:29:15
sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on bm-wb-01
+==============================================================================+
| htslib 1.3.1-1 (armhf) 01 May 2016 22:20 |
+==============================================================================+
Package: htslib
Version: 1.3.1-1
Source Version: 1.3.1-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/htslib-JQNPyA/htslib-1.3.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/htslib-JQNPyA' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/stretch-staging-armhf-sbuild-835ac84e-b7f3-4f7f-9d6c-580eae47c51d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8938 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.0 MB]
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Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/htslib.git -b debian/unstable
Please use:
git clone https://anonscm.debian.org/git/debian-med/htslib.git -b debian/unstable
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1078 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main htslib 1.3.1-1 (dsc) [2138 B]
Get:2 http://172.17.0.1/private stretch-staging/main htslib 1.3.1-1 (tar) [1066 kB]
Get:3 http://172.17.0.1/private stretch-staging/main htslib 1.3.1-1 (diff) [10.1 kB]
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Download complete and in download only mode
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-RJ0oXE/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-RJ0oXE/apt_archive ./ InRelease
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Get:3 file:/<<BUILDDIR>>/resolver-RJ0oXE/apt_archive ./ Release.gpg [299 B]
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Get:5 file:/<<BUILDDIR>>/resolver-RJ0oXE/apt_archive ./ Packages [524 B]
Ign:4 file:/<<BUILDDIR>>/resolver-RJ0oXE/apt_archive ./ Sources
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Reading package lists...
W: file:///<<BUILDDIR>>/resolver-RJ0oXE/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
manpages
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
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debconf: delaying package configuration, since apt-utils is not installed
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), dh-exec, libcurl4-gnutls-dev, libssl-dev, zlib1g-dev, autoconf
Filtered Build-Depends: debhelper (>= 9), dh-exec, libcurl4-gnutls-dev, libssl-dev, zlib1g-dev, autoconf
dpkg-deb: building package 'sbuild-build-depends-htslib-dummy' in '/<<BUILDDIR>>/resolver-OXhxtV/apt_archive/sbuild-build-depends-htslib-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-OXhxtV/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-OXhxtV/apt_archive ./ InRelease
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Get:2 file:/<<BUILDDIR>>/resolver-OXhxtV/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-OXhxtV/apt_archive ./ Release.gpg [299 B]
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Get:4 file:/<<BUILDDIR>>/resolver-OXhxtV/apt_archive ./ Sources [244 B]
Get:5 file:/<<BUILDDIR>>/resolver-OXhxtV/apt_archive ./ Packages [564 B]
Ign:4 file:/<<BUILDDIR>>/resolver-OXhxtV/apt_archive ./ Sources
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Get:4 file:/<<BUILDDIR>>/resolver-OXhxtV/apt_archive ./ Sources [321 B]
Get:5 file:/<<BUILDDIR>>/resolver-OXhxtV/apt_archive ./ Packages [818 B]
Reading package lists...
W: file:///<<BUILDDIR>>/resolver-OXhxtV/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
Install htslib build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
manpages
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3
libcurl3-gnutls libcurl4-gnutls-dev libffi6 libfile-stripnondeterminism-perl
libglib2.0-0 libgnutls30 libgssapi-krb5-2 libhogweed4 libicu55 libidn11
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1
libnettle6 libnghttp2-14 libp11-kit0 libpipeline1 librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libssl-dev libssl1.0.2 libtasn1-6
libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libcurl4-doc libcurl3-dbg libgnutls28-dev libidn11-dev libkrb5-dev
libldap2-dev librtmp-dev libssh2-1-dev pkg-config gnutls-bin krb5-doc
krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libsasl2-modules libssl-doc libltdl-dev xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3
libcurl3-gnutls libcurl4-gnutls-dev libffi6 libfile-stripnondeterminism-perl
libglib2.0-0 libgnutls30 libgssapi-krb5-2 libhogweed4 libicu55 libidn11
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1
libnettle6 libnghttp2-14 libp11-kit0 libpipeline1 librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libssl-dev libssl1.0.2 libtasn1-6
libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf
sbuild-build-depends-htslib-dummy zlib1g-dev
0 upgraded, 54 newly installed, 0 to remove and 38 not upgraded.
Need to get 23.9 MB/23.9 MB of archives.
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Get:1 file:/<<BUILDDIR>>/resolver-OXhxtV/apt_archive ./ sbuild-build-depends-htslib-dummy 0.invalid.0 [798 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
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Get:10 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
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Get:18 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.4.10-4 [714 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-8 [11.5 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.13.2+dfsg-5 [56.6 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.13.2+dfsg-5 [110 kB]
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Get:29 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
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Get:31 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
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Get:35 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.48.0-1 [2540 kB]
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Get:37 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
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Get:45 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.9.2-1 [65.7 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d-1+b1 [54.4 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.5.0-2.1 [121 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libcurl3-gnutls armhf 7.47.0-1 [244 kB]
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Get:52 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libssl-dev armhf 1.0.2g-2 [1146 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf dh-exec armhf 0.23 [24.9 kB]
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Unpacking intltool-debian (0.35.0+20060710.4) ...
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Unpacking libarchive-zip-perl (1.57-1) ...
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Unpacking libnghttp2-14:armhf (1.9.2-1) ...
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Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d-1+b1) ...
Selecting previously unselected package libssh2-1:armhf.
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Unpacking libssh2-1:armhf (1.5.0-2.1) ...
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Unpacking libcurl3-gnutls:armhf (7.47.0-1) ...
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Unpacking sbuild-build-depends-htslib-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-5) ...
Setting up groff-base (1.22.3-7) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libssl1.0.2:armhf (1.0.2g-2) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up libnettle6:armhf (3.2-1) ...
Setting up libhogweed4:armhf (3.2-1) ...
Setting up libidn11:armhf (1.32-3) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libp11-kit0:armhf (0.23.2-3) ...
Setting up libtasn1-6:armhf (4.8-1) ...
Setting up libgnutls30:armhf (3.4.10-4) ...
Setting up libkeyutils1:armhf (1.5.9-8) ...
Setting up libkrb5support0:armhf (1.13.2+dfsg-5) ...
Setting up libk5crypto3:armhf (1.13.2+dfsg-5) ...
Setting up libkrb5-3:armhf (1.13.2+dfsg-5) ...
Setting up libgssapi-krb5-2:armhf (1.13.2+dfsg-5) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-15) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-15) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up m4 (1.4.17-5) ...
Setting up autoconf (2.69-10) ...
Setting up autotools-dev (20150820.1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.7-2) ...
Setting up libglib2.0-0:armhf (2.48.0-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.57-1) ...
Setting up libfile-stripnondeterminism-perl (0.016-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libtool (2.4.6-0.1) ...
Setting up libnghttp2-14:armhf (1.9.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d-1+b1) ...
Setting up libssh2-1:armhf (1.5.0-2.1) ...
Setting up libcurl3-gnutls:armhf (7.47.0-1) ...
Setting up libcurl4-gnutls-dev:armhf (7.47.0-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libssl-dev:armhf (1.0.2g-2) ...
Setting up dh-strip-nondeterminism (0.016-1) ...
Setting up dh-autoreconf (12) ...
Setting up debhelper (9.20160403) ...
Setting up dh-exec (0.23) ...
Setting up sbuild-build-depends-htslib-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-5) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-8 dpkg-dev_1.18.4 g++-5_5.3.1-14 gcc-5_5.3.1-14 libc6-dev_2.22-5 libstdc++-5-dev_5.3.1-14 libstdc++6_5.3.1-14 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.114 apt_1.2.10 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.7-2 autotools-dev_20150820.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-8 bsdmainutils_9.0.10 bsdutils_1:2.27.1-6 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-14 dash_0.5.8-2.2 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.7 dh-autoreconf_12 dh-exec_0.23 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.120-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.43~WIP.2016.03.15-2 e2fsprogs_1.43~WIP.2016.03.15-2 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-14 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-12 gcc-5_5.3.1-14 gcc-5-base_5.3.1-14 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-5 gpgv_1.4.20-5 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-5 hostname_3.17 init_1.29 init-system-helpers_1.29 initscripts_2.88dsf-59.3 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-8+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10-4 libapt-pkg5.0_1.2.10 libarchive-zip-perl_1.57-1 libasan2_5.3.1-14 libatomic1_5.3.1-14 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-6 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.22-5 libc-dev-bin_2.22-5 libc6_2.22-5 libc6-dev_2.22-5 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-14 libcomerr2_1.43~WIP.2016.03.15-2 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcurl3-gnutls_7.47.0-1 libcurl4-gnutls-dev_7.47.0-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.208 libdevmapper1.02.1_2:1.02.120-1 libdpkg-perl_1.18.4 libdrm2_2.4.67-1 libfakeroot_1.20.2-1 libfdisk1_2.27.1-6 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgc1c2_1:7.4.2-7.4 libgcc-5-dev_5.3.1-14 libgcc1_1:5.3.1-14 libgcrypt20_1.6.5-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.0-1 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.10-4 libgomp1_5.3.1-14 libgpg-error0_1.21-2 libgssapi-krb5-2_1.13.2+dfsg-5 libhogweed4_3.2-1 libicu55_55.1-7 libidn11_1.32-3 libisl15_0.16.1-1 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8 libklibc_2.0.4-8+rpi1 libkmod2_22-1.1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-6 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160319-1 libncursesw5_6.0+20160319-1 libnettle6_3.2-1 libnghttp2-14_1.9.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-3.1 libperl5.22_5.22.1-9 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 librtmp1_2.4+20151223.gitfa8646d-1+b1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.0-1 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsigsegv2_2.10-5 libsmartcols1_2.27.1-6 libss2_1.43~WIP.2016.03.15-2 libssh2-1_1.5.0-2.1 libssl-dev_1.0.2g-2 libssl1.0.2_1.0.2g-2 libstdc++-5-dev_5.3.1-14 libstdc++6_5.3.1-14 libsystemd0_229-4 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-1 libtool_2.4.6-0.1 libubsan0_5.3.1-14 libudev1_229-4 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.05-1 mawk_1.3.3-17 mount_2.27.1-6 multiarch-support_2.22-5 nano_2.5.3-2 ncurses-base_6.0+20160319-1 ncurses-bin_6.0+20160319-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-9 perl-base_5.22.1-9 perl-modules-5.22_5.22.1-9 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htslib-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_229-4 systemd-sysv_229-4 sysv-rc_2.88dsf-59.3 sysvinit-utils_2.88dsf-59.3 tar_1.28-2.1 tzdata_2016c-0+deb8u1 udev_229-4 util-linux_2.27.1-6 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Apr 25 13:32:44 2016 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./htslib_1.3.1-1.dsc
dpkg-source: info: extracting htslib in htslib-1.3.1
dpkg-source: info: unpacking htslib_1.3.1.orig.tar.gz
dpkg-source: info: unpacking htslib_1.3.1-1.debian.tar.xz
dpkg-source: info: applying define_PATH_MAX.patch
dpkg-source: info: applying literal_version.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-835ac84e-b7f3-4f7f-9d6c-580eae47c51d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: source package htslib
dpkg-buildpackage: source version 1.3.1-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build htslib-1.3.1
dpkg-buildpackage: host architecture armhf
dpkg-source: info: using options from htslib-1.3.1/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md)$
fakeroot debian/rules clean
dh clean --parallel
dh_testdir -O--parallel
dh_auto_clean -O--parallel
make -j4 distclean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f test/*.tmp test/*.tmp.*
rm -f libhts.so libhts.so.*
rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM version.h
rm -f libhts.a bgzip htsfile tabix test/fieldarith test/hfile test/sam test/test-regidx test/test_view test/test-vcf-api test/test-vcf-sweep
rm -f config.cache config.h config.log config.mk config.status
rm -f TAGS *-uninstalled.pc
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--parallel
rm -f debian/debhelper-build-stamp
rm -f debian/libhts1.substvars
rm -f debian/libhts1.*.debhelper
rm -rf debian/libhts1/
rm -f debian/libhts-dev.substvars
rm -f debian/libhts-dev.*.debhelper
rm -rf debian/libhts-dev/
rm -f debian/htslib-test.substvars
rm -f debian/htslib-test.*.debhelper
rm -rf debian/htslib-test/
rm -f debian/tabix.substvars
rm -f debian/tabix.*.debhelper
rm -rf debian/tabix/
rm -rf debian/.debhelper/
rm -f debian/*.debhelper.log
rm -f debian/files
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
rm -f *-stamp
debian/rules build-arch
dh build-arch --parallel
dh_testdir -a -O--parallel
dh_update_autotools_config -a -O--parallel
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
autoconf
./configure --enable-libcurl
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ranlib... ranlib
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for gmtime_r... yes
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for curl_easy_pause in -lcurl... yes
checking for CCHmac... no
checking for library containing HMAC... -lcrypto
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- \
CFLAGS="$(dpkg-buildflags --get CFLAGS)" \
CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \
LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \
# re-try later LDLIBS=-lhts \
PACKAGE_VERSION="1.3.1-1" \
libdir=/usr/lib/arm-linux-gnueabihf
make -j4 "CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS=-Wl,-z,relro
make[2]: Entering directory '/<<PKGBUILDDIR>>'
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c
echo '#define HTS_VERSION "1.3.1"' > version.h
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_samtools.o cram/cram_samtools.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/files.o cram/files.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/rANS_static.o cram/rANS_static.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/sam_header.o cram/sam_header.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/thread_pool.o cram/thread_pool.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/vlen.o cram/vlen.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/zfio.o cram/zfio.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_libcurl.o hfile_libcurl.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o kfunc.pico kfunc.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o knetfile.pico knetfile.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o kstring.pico kstring.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o bgzf.pico bgzf.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o faidx.pico faidx.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o hfile.pico hfile.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o hfile_net.pico hfile_net.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o hts.pico hts.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o md5.pico md5.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o regidx.pico regidx.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o sam.pico sam.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o synced_bcf_reader.pico synced_bcf_reader.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o vcf_sweep.pico vcf_sweep.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o tbx.pico tbx.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o vcf.pico vcf.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o vcfutils.pico vcfutils.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_codecs.pico cram/cram_codecs.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_decode.pico cram/cram_decode.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_encode.pico cram/cram_encode.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_external.pico cram/cram_external.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_index.pico cram/cram_index.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_io.pico cram/cram_io.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_samtools.pico cram/cram_samtools.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_stats.pico cram/cram_stats.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/files.pico cram/files.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/mFILE.pico cram/mFILE.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/open_trace_file.pico cram/open_trace_file.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/pooled_alloc.pico cram/pooled_alloc.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/rANS_static.pico cram/rANS_static.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/sam_header.pico cram/sam_header.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/string_alloc.pico cram/string_alloc.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/thread_pool.pico cram/thread_pool.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/vlen.pico cram/vlen.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/zfio.pico cram/zfio.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o hfile_libcurl.pico hfile_libcurl.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c
gcc -shared -Wl,-soname,libhts.so.1 -pthread -Wl,-z,relro -o libhts.so kfunc.pico knetfile.pico kstring.pico bgzf.pico faidx.pico hfile.pico hfile_net.pico hts.pico md5.pico regidx.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/sam_header.pico cram/string_alloc.pico cram/thread_pool.pico cram/vlen.pico cram/zfio.pico hfile_libcurl.pico -lz -lm -lcurl -lcrypto
ln -sf libhts.so libhts.so.1
ar -rc libhts.a kfunc.o knetfile.o kstring.o bgzf.o faidx.o hfile.o hfile_net.o hts.o md5.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o cram/thread_pool.o cram/vlen.o cram/zfio.o hfile_libcurl.o
ranlib libhts.a
gcc -pthread -Wl,-z,relro -o bgzip bgzip.o libhts.a -lz -lcurl -lcrypto
gcc -pthread -Wl,-z,relro -o htsfile htsfile.o libhts.a -lz -lcurl -lcrypto
gcc -pthread -Wl,-z,relro -o tabix tabix.o libhts.a -lz -lcurl -lcrypto
gcc -pthread -Wl,-z,relro -o test/fieldarith test/fieldarith.o libhts.a -lz -lcurl -lcrypto
gcc -pthread -Wl,-z,relro -o test/hfile test/hfile.o libhts.a -lz -lcurl -lcrypto
gcc -pthread -Wl,-z,relro -o test/sam test/sam.o libhts.a -lz -lcurl -lcrypto
gcc -pthread -Wl,-z,relro -o test/test-regidx test/test-regidx.o libhts.a -lz -lcurl -lcrypto
gcc -pthread -Wl,-z,relro -o test/test_view test/test_view.o libhts.a -lz -lcurl -lcrypto
gcc -pthread -Wl,-z,relro -o test/test-vcf-api test/test-vcf-api.o libhts.a -lz -lcurl -lcrypto
gcc -pthread -Wl,-z,relro -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -lz -lcurl -lcrypto
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test
make -j4 test VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>'
test/fieldarith test/fieldarith.sam
test/hfile
test/sam test/ce.fa test/faidx.fa
Makefile:310: recipe for target 'test' failed
make[2]: *** [test] Bus error
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test: make -j4 test VERBOSE=1 returned exit code 2
debian/rules:10: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules:7: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--------------------------------------------------------------------------------
Build finished at 20160501-2227
Finished
--------
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 33212
Build-Time: 174
Distribution: stretch-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 237
Job: htslib_1.3.1-1
Machine Architecture: armhf
Package: htslib
Package-Time: 451
Source-Version: 1.3.1-1
Space: 33212
Status: attempted
Version: 1.3.1-1
--------------------------------------------------------------------------------
Finished at 20160501-2227
Build needed 00:07:31, 33212k disc space