htseq →
1.99.2-1+b1 →
armhf → 2022-04-21 10:14:23
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| htseq 1.99.2-1+b1 (armhf) Thu, 21 Apr 2022 09:56:35 +0000 |
+==============================================================================+
Package: htseq
Version: 1.99.2-1+b1
Source Version: 1.99.2-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-80200a58-7415-4355-b24b-b86f47e72bad' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
Fetched 26.8 MB in 12s (2325 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'htseq' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/htseq.git
Please use:
git clone https://salsa.debian.org/med-team/htseq.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 37.0 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main htseq 1.99.2-1 (dsc) [2161 B]
Get:2 http://172.17.4.1/private bookworm-staging/main htseq 1.99.2-1 (tar) [37.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main htseq 1.99.2-1 (diff) [11.1 kB]
Fetched 37.0 MB in 5s (7444 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/htseq-4d1daz/htseq-1.99.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/htseq-4d1daz' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-gW7zgl/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-gW7zgl/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-gW7zgl/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (3177 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 52 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (56.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12608 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: 2to3, debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
Filtered Build-Depends: 2to3, debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
dpkg-deb: building package 'sbuild-build-depends-htseq-dummy' in '/<<BUILDDIR>>/resolver-gW7zgl/apt_archive/sbuild-build-depends-htseq-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-htseq-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ Sources [552 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ Packages [632 B]
Fetched 2517 B in 1s (4264 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install htseq build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
2to3 autoconf automake autopoint autotools-dev blt bsdextrautils cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
fontconfig-config fonts-dejavu-core fonts-lyx gcc-12-base gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
libbrotli1 libbsd0 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3
libharfbuzz0b libhts3 libhtscodecs2 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libmagic-mgc libmagic1
libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0
libraqm0 librtmp1 libsigsegv2 libsmartcols1 libssh2-1 libsub-override-perl
libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db media-types po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs
python3-attr python3-brotli python3-chardet python3-cycler python3-dateutil
python3-debian python3-decorator python3-dev python3-distutils
python3-fonttools python3-fs python3-kiwisolver python3-lib2to3 python3-lxml
python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources
python3-pyparsing python3-pysam python3-scipy python3-setuptools python3-six
python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2
python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev
python3.9-minimal sgml-base swig swig4.0 tk8.6-blt2.5 ucf unicode-data
x11-common zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit
python3-build python3-tomli python3-installer gettext-doc libasprintf-dev
libgettextpo-dev groff libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-venv python-attr-doc
python-cycler-doc python-lxml-doc dvipng ffmpeg fonts-staypuft ghostscript
gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc
python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5
python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-pytest
python-pil-doc python-pyparsing-doc python-scipy-doc python-setuptools-doc
texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv
python3.10-doc binfmt-support python3.9-venv python3.9-doc sgml-base-doc
swig-doc swig-examples swig4.0-examples swig4.0-doc
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common publicsuffix libltdl-dev
libmail-sendmail-perl python3-apt python3-bs4 python3-html5lib
python3-olefile
The following NEW packages will be installed:
2to3 autoconf automake autopoint autotools-dev blt bsdextrautils cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
fontconfig-config fonts-dejavu-core fonts-lyx gcc-12-base gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
libbrotli1 libbsd0 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3
libharfbuzz0b libhts3 libhtscodecs2 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libmagic-mgc libmagic1
libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0
libraqm0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl libtcl8.6
libtiff5 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3
libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxrender1 libxslt1.1 libxss1 m4 man-db media-types po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs
python3-attr python3-brotli python3-chardet python3-cycler python3-dateutil
python3-debian python3-decorator python3-dev python3-distutils
python3-fonttools python3-fs python3-kiwisolver python3-lib2to3 python3-lxml
python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources
python3-pyparsing python3-pysam python3-scipy python3-setuptools python3-six
python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2
python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev
python3.9-minimal sbuild-build-depends-htseq-dummy sgml-base swig swig4.0
tk8.6-blt2.5 ucf unicode-data x11-common zlib1g-dev
The following packages will be upgraded:
libsmartcols1 zlib1g
2 upgraded, 155 newly installed, 0 to remove and 50 not upgraded.
Need to get 103 MB of archives.
After this operation, 448 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gW7zgl/apt_archive ./ sbuild-build-depends-htseq-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.4-1 [811 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-4 [84.2 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.4-1 [1633 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.4-1 [38.6 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf media-types all 7.1.0 [33.2 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.4-1 [1625 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.4-1 [536 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.4-1 [21.7 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.4-1 [38.1 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.12-1+rpi1 [794 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.12-1+rpi1 [1595 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38-4 [149 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.12-1 [79.9 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf 2to3 all 3.10.4-1 [22.7 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.1+dfsg-1 [334 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.5-1 [308 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.5-1 [706 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.28-3+rpi1 [1456 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7 [195 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-3 [526 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.13+dfsg-1 [593 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7 [1070 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.12-1 [146 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220403 [113 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12-20220319-1+rpi1 [207 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-1 [108 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3 [161 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.82.0-2 [313 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.10-2 [55.4 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.8-1 [137 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12-20220319-1+rpi1 [238 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.0-1 [1229 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.2.1-1 [52.7 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2 [339 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.1+dfsg-1 [250 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-3 [142 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-1 [1587 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-10 [24.2 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.4.0-6 [150 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.4-1 [1454 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4 [183 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.4-1 [2984 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.4-1 [22.0 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.12-1+rpi1 [1611 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.12-1+rpi1 [1419 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.12-1+rpi1 [3013 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.4-1 [1072 B]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-4 [221 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-6+b1 [273 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2 [97.1 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2 [105 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.34-4 [218 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.5.1-2 [2741 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.12-1+rpi1 [492 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.4-1 [1064 B]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.4-1 [508 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.4-1 [25.4 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.12-1+rpi1 [501 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.4-1 [1076 B]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-2 [12.9 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 21.2.0-1 [57.5 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b2 [278 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-1 [99.0 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-3 [17.5 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python3-debian all 0.1.43 [115 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b1 [5157 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.7.3-2+b1 [13.0 MB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.9-1 [4227 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.1-1 [34.8 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.12-1 [89.1 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.8.0-1 [1297 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 4.0.0+dfsg-1 [24.0 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds-8 [296 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 14.0.0-1.1 [7868 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.32.0-1 [795 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1+b1 [52.1 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.0.1-1+b1 [429 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.9.12-1 [104 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.0.1-1+b1 [76.9 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.7-2 [140 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1 [34.1 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.5.1-2+b1 [7154 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-pysam armhf 0.17.0+ds-2+b1 [1834 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf swig4.0 armhf 4.0.2-2 [1221 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf swig all 4.0.2-2 [330 kB]
debconf: delaying package configuration, since apt-utils is not installed
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libfreetype6:armhf (2.11.1+dfsg-1) ...
Setting up libjs-sphinxdoc (4.5.0-3) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-8) ...
Setting up libxslt1.1:armhf (1.1.34-4) ...
Setting up libx11-6:armhf (2:1.7.5-1) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.4) ...
Setting up python3.9 (3.9.12-1+rpi1) ...
Setting up libpython3-stdlib:armhf (3.10.4-1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpython3.10:armhf (3.10.4-1) ...
Setting up liblapack3:armhf (3.10.1-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libhts3:armhf (1.13+ds-2) ...
Setting up python3.10 (3.10.4-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libpython3.9-dev:armhf (3.9.12-1+rpi1) ...
Setting up python3 (3.10.4-1) ...
Setting up man-db (2.10.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-tz (2022.1-1) ...
Setting up python3-six (1.16.0-3) ...
Setting up dh-autoreconf (20) ...
Setting up python3-decorator (4.4.2-2) ...
Setting up python3-pyparsing (3.0.7-2) ...
Setting up python3-brotli (1.0.9-2+b2) ...
Setting up libraqm0:armhf (0.7.0-4) ...
Setting up python3-cycler (0.11.0-1) ...
Setting up python3-kiwisolver (1.3.2-1+b1) ...
Setting up cython3 (0.29.28-3+rpi1) ...
Setting up libpython3.10-dev:armhf (3.10.4-1) ...
Setting up python3.10-dev (3.10.4-1) ...
Setting up python3.9-dev (3.9.12-1+rpi1) ...
Setting up python3-lxml:armhf (4.8.0-1) ...
Setting up python3-dateutil (2.8.1-6) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-lib2to3 (3.9.12-1) ...
Setting up python3-appdirs (1.4.4-2) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-10) ...
Setting up python3-pkg-resources (59.6.0-1.2) ...
Setting up python3-distutils (3.9.12-1) ...
Setting up dh-python (5.20220403) ...
Setting up python3-sympy (1.9-1) ...
Setting up python3-attr (21.2.0-1) ...
Setting up libxft2:armhf (2.3.4-1) ...
Setting up python3-pysam (0.17.0+ds-2+b1) ...
Setting up libpython3-dev:armhf (3.10.4-1) ...
Setting up python3-setuptools (59.6.0-1.2) ...
Setting up python3-lz4 (4.0.0+dfsg-1) ...
Setting up python3-unicodedata2 (14.0.0+ds-8) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up python3-all (3.10.4-1) ...
Setting up debhelper (13.7) ...
Setting up 2to3 (3.10.4-1) ...
Setting up python3-fs (2.4.12-1) ...
Setting up python3-packaging (21.3-1) ...
Setting up python3-chardet (4.0.0-1) ...
Setting up libpython3-all-dev:armhf (3.10.4-1) ...
Setting up python3-debian (0.1.43) ...
Setting up python3-dev (3.10.4-1) ...
Setting up python3-numpy (1:1.21.5-1+b1) ...
Setting up python3-all-dev (3.10.4-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up python3-scipy (1.7.3-2+b1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.9.12-1) ...
Setting up python3-fonttools (4.32.0-1) ...
Setting up python3-pil:armhf (9.0.1-1+b1) ...
Setting up python3-pil.imagetk:armhf (9.0.1-1+b1) ...
Setting up python3-ufolib2 (0.13.1+dfsg1-1) ...
Setting up python3-matplotlib (3.5.1-2+b1) ...
Setting up sbuild-build-depends-htseq-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.2+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.16.14-1+rpi1
Package versions: 2to3_3.10.4-1 adduser_3.120 apt_2.4.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.38-4 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 cython3_0.29.28-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7 debianutils_5.7-0.1 dh-autoreconf_20 dh-python_5.20220403 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3+b1 dpkg_1.21.2+rpi1 dpkg-dev_1.21.2+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-2 findutils_4.9.0-2 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.6-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-12-base_12-20220319-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3+b1 gpg_2.2.27-3+b1 gpg-agent_2.2.27-3+b1 gpg-wks-client_2.2.27-3+b1 gpg-wks-server_2.2.27-3+b1 gpgconf_2.2.27-3+b1 gpgsm_2.2.27-3+b1 gpgv_2.2.27-3+b1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.4.3 libarchive-zip-perl_1.68-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38-3+rpi1 libblas3_3.10.1-1 libblkid1_2.37.3-1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-16+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-3+rpi1 libctf0_2.38-3+rpi1 libcurl3-gnutls_7.82.0-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.7 libdeflate0_1.10-2 libdpkg-perl_1.21.2+rpi1 libelf1_0.186-1 libexpat1_2.4.8-1 libexpat1-dev_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.28-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontconfig1_2.13.1-4.4 libfreetype6_2.11.1+dfsg-1 libfribidi0_1.0.8-2.1 libgcc-11-dev_11.2.0-16+rpi1 libgcc-s1_11.2.0-16+rpi1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12-20220319-1+rpi1 libglib2.0-0_2.72.0-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.3-4 libgomp1_11.2.0-16+rpi1 libgpg-error0_1.43-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.19.2-2+b1 libharfbuzz0b_2.7.4-1 libhogweed6_3.7.3-1 libhts3_1.13+ds-2 libhtscodecs2_1.2.1-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libimagequant0_2.17.0-1 libisl23_0.24-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-jquery-ui_1.13.1+dfsg-1 libjs-sphinxdoc_4.5.0-3 libjs-underscore_1.13.2~dfsg-2 libk5crypto3_1.19.2-2+b1 libkeyutils1_1.6.1-3+rpi1 libkrb5-3_1.19.2-2+b1 libkrb5support0_1.19.2-2+b1 libksba8_1.6.0-2 liblapack3_3.10.1-1 liblbfgsb0_3.0+dfsg.3-10 liblcms2-2_2.12~rc1-2 libldap-2.5-0_2.5.11+dfsg-1+rpi1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmount1_2.37.3-1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3-2 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.4.0-6 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libpython3-all-dev_3.10.4-1 libpython3-dev_3.10.4-1 libpython3-stdlib_3.10.4-1 libpython3.10_3.10.4-1 libpython3.10-dev_3.10.4-1 libpython3.10-minimal_3.10.4-1 libpython3.10-stdlib_3.10.4-1 libpython3.9_3.9.12-1+rpi1 libpython3.9-dev_3.9.12-1+rpi1 libpython3.9-minimal_3.9.12-1+rpi1 libpython3.9-stdlib_3.9.12-1+rpi1 libqhull-r8.0_2020.2-4 libraqm0_0.7.0-4 libreadline8_8.1.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-2+b1 libsasl2-modules-db_2.1.28+dfsg-2+b1 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.38-4 libsqlite3-0_3.38.1-1 libss2_1.46.5-2 libssh2-1_1.10.0-3 libssl1.1_1.1.1n-1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_250.4-1+rpi1 libtasn1-6_4.18.0-4 libtcl8.6_8.6.12+dfsg-1 libtiff5_4.3.0-6+b1 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.12-1 libtool_2.4.7-3 libubsan1_11.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_250.4-1+rpi1 libunistring2_1.0-1 libuuid1_2.37.3-1 libwebp7_1.2.2-2 libwebpdemux2_1.2.2-2 libwebpmux3_1.2.2-2 libx11-6_2:1.7.5-1 libx11-data_2:1.7.5-1 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.4-1 libxml2_2.9.13+dfsg-1 libxrender1_1:0.9.10-1 libxslt1.1_1.1.34-4 libxss1_1:1.2.3-1 libxxhash0_0.8.1-1 libzstd1_1.4.9+dfsg-1+rpi1 linux-libc-dev_5.16.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3 media-types_7.1.0 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 netbase_6.3 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.5.1-2 python3_3.10.4-1 python3-all_3.10.4-1 python3-all-dev_3.10.4-1 python3-appdirs_1.4.4-2 python3-attr_21.2.0-1 python3-brotli_1.0.9-2+b2 python3-chardet_4.0.0-1 python3-cycler_0.11.0-1 python3-dateutil_2.8.1-6 python3-debian_0.1.43 python3-decorator_4.4.2-2 python3-dev_3.10.4-1 python3-distutils_3.9.12-1 python3-fonttools_4.32.0-1 python3-fs_2.4.12-1 python3-kiwisolver_1.3.2-1+b1 python3-lib2to3_3.9.12-1 python3-lxml_4.8.0-1 python3-lz4_4.0.0+dfsg-1 python3-matplotlib_3.5.1-2+b1 python3-minimal_3.10.4-1 python3-mpmath_1.2.1-2 python3-numpy_1:1.21.5-1+b1 python3-packaging_21.3-1 python3-pil_9.0.1-1+b1 python3-pil.imagetk_9.0.1-1+b1 python3-pkg-resources_59.6.0-1.2 python3-pyparsing_3.0.7-2 python3-pysam_0.17.0+ds-2+b1 python3-scipy_1.7.3-2+b1 python3-setuptools_59.6.0-1.2 python3-six_1.16.0-3 python3-sympy_1.9-1 python3-tk_3.9.12-1 python3-tz_2022.1-1 python3-ufolib2_0.13.1+dfsg1-1 python3-unicodedata2_14.0.0+ds-8 python3.10_3.10.4-1 python3.10-dev_3.10.4-1 python3.10-minimal_3.10.4-1 python3.9_3.9.12-1+rpi1 python3.9-dev_3.9.12-1+rpi1 python3.9-minimal_3.9.12-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htseq-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 swig_4.0.2-2 swig4.0_4.0.2-2 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2021e-1 ucf_3.0043 unicode-data_14.0.0-1.1 util-linux_2.37.3-1 x11-common_1:7.7+23 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.4TGFv6wl/trustedkeys.kbx': General error
gpgv: Signature made Sun Jan 16 18:49:05 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./htseq_1.99.2-1.dsc
dpkg-source: info: extracting htseq in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking htseq_1.99.2.orig.tar.gz
dpkg-source: info: unpacking htseq_1.99.2-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.99.2-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-80200a58-7415-4355-b24b-b86f47e72bad
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package htseq
dpkg-buildpackage: info: source version 1.99.2-1+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:239: python3.9 setup.py clean
/bin/sh: 1: git: not found
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
I: pybuild base:239: python3.10 setup.py clean
/<<PKGBUILDDIR>>/setup.py:5: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.log import INFO as logINFO
/bin/sh: 1: git: not found
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
# setup.py creates some symlinks in clean target
# remove these links to keep source tree clean
for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \
if [ -L ${link} ] ; then rm ${link} ; fi \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:239: python3.9 setup.py config
/bin/sh: 1: git: not found
running config
I: pybuild base:239: python3.10 setup.py config
/<<PKGBUILDDIR>>/setup.py:5: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.log import INFO as logINFO
/bin/sh: 1: git: not found
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:239: /usr/bin/python3.9 setup.py build
/bin/sh: 1: git: not found
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.28
SWIGging
moving swigged .py module
done
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/StretchVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/features.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/count_features_per_file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/reads_io_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/reads_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features
running build_ext
building 'HTSeq._HTSeq' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/src
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/_HTSeq.c -o build/temp.linux-armhf-3.9/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.9/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.9
copying and adjusting scripts/htseq-qa -> build/scripts-3.9
copying and adjusting scripts/htseq-count -> build/scripts-3.9
copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.9
changing mode of build/scripts-3.9/htseq-qa from 644 to 755
changing mode of build/scripts-3.9/htseq-count from 644 to 755
changing mode of build/scripts-3.9/htseq-count-barcodes from 644 to 755
I: pybuild base:239: /usr/bin/python3 setup.py build
/<<PKGBUILDDIR>>/setup.py:5: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.log import INFO as logINFO
/bin/sh: 1: git: not found
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.28
SWIGging
moving swigged .py module
done
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq
copying HTSeq/StretchVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts
copying HTSeq/scripts/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts
copying HTSeq/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq
copying HTSeq/features.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/count_features_per_file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/reads_io_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/reads_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_features
running build_ext
building 'HTSeq._HTSeq' extension
creating build/temp.linux-armhf-3.10
creating build/temp.linux-armhf-3.10/src
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c src/_HTSeq.c -o build/temp.linux-armhf-3.10/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/_HTSeq.cpython-310-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.10/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/_StepVector.cpython-310-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.10
copying and adjusting scripts/htseq-qa -> build/scripts-3.10
copying and adjusting scripts/htseq-count -> build/scripts-3.10
copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.10
changing mode of build/scripts-3.10/htseq-qa from 644 to 755
changing mode of build/scripts-3.10/htseq-count from 644 to 755
changing mode of build/scripts-3.10/htseq-count-barcodes from 644 to 755
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build; python3.9 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build; python3.10 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-htseq/ -a -O--buildsystem=pybuild
I: pybuild base:239: /usr/bin/python3.9 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-htseq
/bin/sh: 1: git: not found
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.28
SWIGging
moving swigged .py module
done
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
running build_ext
building 'HTSeq._HTSeq' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/_HTSeq.c -o build/temp.linux-armhf-3.9/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.9/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/StretchVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features/count_features_per_file.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features/reads_io_processor.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features/reads_stats.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_features/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/features.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/StepVector.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/StretchVector.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/utils.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/_version.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/features.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/StretchVector.py to StretchVector.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/qa.py to qa.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count.py to count.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/utils.py to utils.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py to count_features_per_file.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py to reads_io_processor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_features/reads_stats.py to reads_stats.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/utils.py to utils.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/features.py to features.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/StepVector.py to StepVector.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/_version.py to _version.cpython-39.pyc
running install_egg_info
running egg_info
writing HTSeq.egg-info/PKG-INFO
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing requirements to HTSeq.egg-info/requires.txt
writing top-level names to HTSeq.egg-info/top_level.txt
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'todo.txt'
adding license file 'LICENSE'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq-1.99.2.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.9/htseq-qa -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.9/htseq-count -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.9/htseq-count-barcodes -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-qa to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755
I: pybuild base:239: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-htseq
/<<PKGBUILDDIR>>/setup.py:5: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
from distutils.log import INFO as logINFO
/bin/sh: 1: git: not found
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.28
SWIGging
moving swigged .py module
done
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq
running build_ext
building 'HTSeq._HTSeq' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c src/_HTSeq.c -o build/temp.linux-armhf-3.10/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/_HTSeq.cpython-310-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.10/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/_StepVector.cpython-310-arm-linux-gnueabihf.so
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/StretchVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_features/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_features/count_features_per_file.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_features/reads_io_processor.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_features/reads_stats.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/count_features/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/features.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/__pycache__/StepVector.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/__pycache__/StretchVector.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/__pycache__/utils.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/__pycache__/_version.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/__pycache__/features.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/_HTSeq.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_htseq/build/HTSeq/_StepVector.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/StretchVector.py to StretchVector.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/qa.py to qa.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count.py to count.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/utils.py to utils.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py to count_features_per_file.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py to reads_io_processor.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/scripts/count_features/reads_stats.py to reads_stats.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/utils.py to utils.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/features.py to features.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/StepVector.py to StepVector.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq/_version.py to _version.cpython-310.pyc
running install_egg_info
running egg_info
writing HTSeq.egg-info/PKG-INFO
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing requirements to HTSeq.egg-info/requires.txt
writing top-level names to HTSeq.egg-info/top_level.txt
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'todo.txt'
adding license file 'LICENSE'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.10/dist-packages/HTSeq-1.99.2.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.10/htseq-qa -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.10/htseq-count -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.10/htseq-count-barcodes -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-qa to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_1.99.2-1+b1_armhf.deb'.
dpkg-deb: building package 'python3-htseq' in '../python3-htseq_1.99.2-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../htseq_1.99.2-1+b1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../htseq_1.99.2-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-04-21T10:14:19Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
htseq_1.99.2-1+b1_armhf.changes:
--------------------------------
Format: 1.8
Date: Sun, 16 Jan 2022 18:57:47 +0100
Source: htseq (1.99.2-1)
Binary: python3-htseq python3-htseq-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.99.2-1+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
python3-htseq - Python3 high-throughput genome sequencing read analysis utilities
Changes:
htseq (1.99.2-1+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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1238a197e8cdbdfb43ff88553d08af78a3c0afa52138b7b2cb7f7f77e696c585 2246644 python3-htseq-dbgsym_1.99.2-1+b1_armhf.deb
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Files:
d222894b64b11f2ddc665218cb3734f2 9317 python optional htseq_1.99.2-1+b1_armhf.buildinfo
ed12ae781f49e0c051babec4eb23cb4b 2246644 debug optional python3-htseq-dbgsym_1.99.2-1+b1_armhf.deb
354fcee08866d5ef7868da452801c916 296876 python optional python3-htseq_1.99.2-1+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-htseq-dbgsym_1.99.2-1+b1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 2246644 bytes: control archive=764 bytes.
529 bytes, 12 lines control
517 bytes, 5 lines md5sums
Package: python3-htseq-dbgsym
Source: htseq (1.99.2-1)
Version: 1.99.2-1+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2438
Depends: python3-htseq (= 1.99.2-1+b1)
Section: debug
Priority: optional
Description: debug symbols for python3-htseq
Build-Ids: 17cd98bcf82b2ff21d45c28f3a051c93296eacfb 4edaba22c1571c2a739c953863790b0a8d9e5103 ba5c2ec65f49245505f019173ac8384c6ab3b0b9 dfd3117658c4377385b6ba53c62059d4499a9efb
drwxr-xr-x root/root 0 2022-01-16 17:57 ./
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.build-id/17/
-rw-r--r-- root/root 980692 2022-01-16 17:57 ./usr/lib/debug/.build-id/17/cd98bcf82b2ff21d45c28f3a051c93296eacfb.debug
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.build-id/4e/
-rw-r--r-- root/root 981268 2022-01-16 17:57 ./usr/lib/debug/.build-id/4e/daba22c1571c2a739c953863790b0a8d9e5103.debug
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.build-id/ba/
-rw-r--r-- root/root 225684 2022-01-16 17:57 ./usr/lib/debug/.build-id/ba/5c2ec65f49245505f019173ac8384c6ab3b0b9.debug
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.build-id/df/
-rw-r--r-- root/root 225912 2022-01-16 17:57 ./usr/lib/debug/.build-id/df/d3117658c4377385b6ba53c62059d4499a9efb.debug
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 65084 2022-01-16 17:57 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-htseq.debug
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/share/
drwxr-xr-x root/root 0 2022-01-16 17:57 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-01-16 17:57 ./usr/share/doc/python3-htseq-dbgsym -> python3-htseq
python3-htseq_1.99.2-1+b1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 296876 bytes: control archive=2164 bytes.
1057 bytes, 24 lines control
2961 bytes, 33 lines md5sums
273 bytes, 12 lines * postinst #!/bin/sh
417 bytes, 12 lines * prerm #!/bin/sh
Package: python3-htseq
Source: htseq (1.99.2-1)
Version: 1.99.2-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1456
Depends: python3 (<< 3.11), python3 (>= 3.9~), python3-numpy, python3-pysam, python3:any, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Provides: python-htseq
Section: python
Priority: optional
Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
Description: Python3 high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks
when working with high-throughput genome sequencing reads:
.
* Getting statistical summaries about the base-call quality scores to
study the data quality.
* Calculating a coverage vector and exporting it for visualization in
a genome browser.
* Reading in annotation data from a GFF file.
* Assigning aligned reads from an RNA-Seq experiments to exons and
genes.
.
This package contains the Python 3 module.
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Build Architecture: armhf
Build-Space: 118228
Build-Time: 387
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 648
Job: htseq_1.99.2-1
Machine Architecture: armhf
Package: htseq
Package-Time: 1064
Source-Version: 1.99.2-1
Space: 118228
Status: successful
Version: 1.99.2-1+b1
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Finished at 2022-04-21T10:14:19Z
Build needed 00:17:44, 118228k disk space