htseq →
0.6.1p1-4 →
armhf → 2017-11-09 04:00:34
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| htseq 0.6.1p1-4 (armhf) Thu, 09 Nov 2017 03:44:00 +0000 |
+==============================================================================+
Package: htseq
Version: 0.6.1p1-4
Source Version: 0.6.1p1-4
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-c7c287b7-4a52-4d33-8c2e-9566072e870c' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.2 MB]
Fetched 22.5 MB in 8s (2549 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'htseq' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/htseq.git
Please use:
git clone git://anonscm.debian.org/debian-med/htseq.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 28.8 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main htseq 0.6.1p1-4 (dsc) [2154 B]
Get:2 http://172.17.0.1/private buster-staging/main htseq 0.6.1p1-4 (tar) [28.8 MB]
Get:3 http://172.17.0.1/private buster-staging/main htseq 0.6.1p1-4 (diff) [7360 B]
Fetched 28.8 MB in 7s (3652 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/htseq-y1yCWZ/htseq-0.6.1p1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/htseq-y1yCWZ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-TL4Xu0/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-TL4Xu0/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (7764 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15098 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), python-debian, python-setuptools, python-all-dev, python-sphinx, python-numpy, python-matplotlib, python-pysam, swig, cython
Filtered Build-Depends: debhelper (>= 9), python-debian, python-setuptools, python-all-dev, python-sphinx, python-numpy, python-matplotlib, python-pysam, swig, cython
dpkg-deb: building package 'sbuild-build-depends-htseq-dummy' in '/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive/sbuild-build-depends-htseq-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-htseq-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ Sources [544 B]
Get:5 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ Packages [625 B]
Fetched 2502 B in 0s (9069 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install htseq build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
e2fsprogs-l10n libsasl2-modules
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-strip-nondeterminism docutils-common file fontconfig
fontconfig-config fonts-lyx gettext gettext-base gnome-icon-theme groff-base
gtk-update-icon-cache hicolor-icon-theme intltool-debian libarchive-zip-perl
libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data
libavahi-common3 libblas3 libbsd0 libcairo2 libcroco3 libcups2
libcurl3-gnutls libdatrie1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran4 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b
libhts2 libicu57 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack3 libmagic-mgc libmagic1 libnghttp2-14
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1
libpixman-1-0 libpsl5 libpython-all-dev libpython-dev libpython-stdlib
libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib
librsvg2-2 librsvg2-common librtmp1 libsigsegv2 libssh2-1 libthai-data
libthai0 libtiff5 libtimedate-perl libtool libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1
libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2
libxrender1 m4 man-db mime-support po-debconf python python-alabaster
python-all python-all-dev python-babel python-babel-localedata
python-certifi python-chardet python-cycler python-dateutil python-debian
python-dev python-docutils python-functools32 python-idna python-imagesize
python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data
python-minimal python-numpy python-pkg-resources python-pygments
python-pyparsing python-pysam python-requests python-roman python-setuptools
python-six python-sphinx python-subprocess32 python-typing python-tz
python-urllib3 python2.7 python2.7-dev python2.7-minimal sgml-base
shared-mime-info sphinx-common swig swig3.0 ttf-bitstream-vera ucf xml-core
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev
groff cups-common krb5-doc krb5-user gvfs libjs-jquery-ui-docs librsvg2-bin
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser
libmail-box-perl python-doc python-tk python-cycler-doc fonts-linuxlibertine
| ttf-linux-libertine texlive-lang-french texlive-latex-base
texlive-latex-recommended python-jinja2-doc dvipng ffmpeg gir1.2-gtk-3.0
ghostscript inkscape ipython python-cairocffi python-configobj
python-excelerator python-gobject python-gtk2 python-matplotlib-doc
python-nose python-qt4 python-scipy python-sip python-tornado python-traits
python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft
gfortran python-numpy-dbg python-numpy-doc python-pyparsing-doc
python-cryptography python-openssl python-socks python-setuptools-doc
python-sphinx-rtd-theme libjs-mathjax texlive-fonts-recommended
texlive-generic-extra latexmk imagemagick-6.q16 sphinx-doc python-ntlm
python2.7-doc binfmt-support sgml-base-doc swig-doc swig-examples
swig3.0-examples swig3.0-doc
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libgdk-pixbuf2.0-bin
libglib2.0-data xdg-user-dirs libgail-common libgtk2.0-bin javascript-common
krb5-locales publicsuffix libltdl-dev libmail-sendmail-perl python-apt
docutils-doc libpaper-utils python-pil python-glade2 python-imaging
python-tk python-enum34 python-cryptography python-ipaddress python-openssl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-strip-nondeterminism docutils-common file fontconfig
fontconfig-config fonts-lyx gettext gettext-base gnome-icon-theme groff-base
gtk-update-icon-cache hicolor-icon-theme intltool-debian libarchive-zip-perl
libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data
libavahi-common3 libblas3 libbsd0 libcairo2 libcroco3 libcups2
libcurl3-gnutls libdatrie1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran4 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b
libhts2 libicu57 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack3 libmagic-mgc libmagic1 libnghttp2-14
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1
libpixman-1-0 libpsl5 libpython-all-dev libpython-dev libpython-stdlib
libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib
librsvg2-2 librsvg2-common librtmp1 libsigsegv2 libssh2-1 libthai-data
libthai0 libtiff5 libtimedate-perl libtool libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1
libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2
libxrender1 m4 man-db mime-support po-debconf python python-alabaster
python-all python-all-dev python-babel python-babel-localedata
python-certifi python-chardet python-cycler python-dateutil python-debian
python-dev python-docutils python-functools32 python-idna python-imagesize
python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data
python-minimal python-numpy python-pkg-resources python-pygments
python-pyparsing python-pysam python-requests python-roman python-setuptools
python-six python-sphinx python-subprocess32 python-typing python-tz
python-urllib3 python2.7 python2.7-dev python2.7-minimal
sbuild-build-depends-htseq-dummy sgml-base shared-mime-info sphinx-common
swig swig3.0 ttf-bitstream-vera ucf xml-core
0 upgraded, 155 newly installed, 0 to remove and 5 not upgraded.
Need to get 97.6 MB of archives.
After this operation, 284 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-TL4Xu0/apt_archive ./ sbuild-build-depends-htseq-dummy 0.invalid.0 [908 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.14 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8.1-0.1 [401 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.12.3-0.2 [304 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.12.3-0.2 [349 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.12.3-0.2 [435 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.14-2 [393 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.14-2 [1091 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.14-1 [40.7 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.14-2 [1854 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.14-2 [292 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.14-1 [20.1 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.14-1 [155 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf sgml-base all 1.29 [14.8 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-5 [609 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1+nmu1 [74.2 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf cython armhf 0.26.1-0.3+rpi1 [1748 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.1-1 [2653 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.10.5 [978 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf xml-core all 0.18 [23.4 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf docutils-common all 0.14+dfsg-1 [204 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf fonts-lyx all 2.2.3-2 [197 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf hicolor-icon-theme all 0.17-1 [11.5 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2 [110 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.8-6 [219 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.4-3 [290 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf shared-mime-info armhf 1.9-2 [749 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-common all 2.36.11-1 [312 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-0 armhf 2.36.11-1 [153 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf gtk-update-icon-cache armhf 3.22.24-1+rpi1 [76.4 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.8-2 [557 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.27-1 [168 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.10-5 [33.0 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.27-1 [50.0 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.40.12-1 [179 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.10-6 [71.5 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.6.2-1 [683 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.40.12-1 [72.0 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.40.12-1 [61.2 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf librsvg2-2 armhf 2.40.18-2 [269 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf librsvg2-common armhf 2.40.18-2 [195 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf gnome-icon-theme all 3.12.0-2 [9890 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libatk1.0-data all 2.26.0-2 [145 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libatk1.0-0 armhf 2.26.0-2 [42.3 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libavahi-common-data armhf 0.7-3 [122 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libavahi-common3 armhf 0.7-3 [50.6 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libavahi-client3 armhf 0.7-3 [53.4 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.2.0-12 [191 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.7.1-4 [103 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.2-2 [58.6 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.2-2 [116 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.2-2 [263 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.2-2 [133 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libcups2 armhf 2.2.5-2 [282 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.27.0-1 [71.0 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.18.0-4 [42.4 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.56.1-1 [274 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.3-1 [120 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-common all 2.24.31-2 [2693 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libxcomposite1 armhf 1:0.4.4-2 [16.1 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libxfixes3 armhf 1:5.0.3-1 [20.6 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libxcursor1 armhf 1:1.1.14-3 [31.8 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libxdamage1 armhf 1:1.1.4-3 [14.0 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libxi6 armhf 2:1.7.9-1 [77.8 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libxinerama1 armhf 2:1.1.3-1+b3 [16.3 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libxrandr2 armhf 2:1.5.1-1 [34.5 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-0 armhf 2.24.31-2 [1505 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libhts2 armhf 1.5-2 [242 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libjs-jquery all 3.2.1-1 [154 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libjs-underscore all 1.8.3~dfsg-1 [63.8 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libjs-sphinxdoc all 1.6.5-2 [86.1 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.7.1-4 [1508 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.14-2 [904 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.14-2 [27.6 MB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.14-1 [20.1 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.14-1 [958 B]
Get:119 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.14-1 [942 B]
Get:120 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.14-2 [295 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.14-1 [1130 B]
Get:122 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.14-1 [964 B]
Get:123 http://172.17.0.1/private buster-staging/main armhf python-babel-localedata all 2.4.0+dfsg.1-2 [3415 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 36.6.0-1 [170 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf python-tz all 2017.2-2 [33.9 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf python-babel all 2.4.0+dfsg.1-2 [84.3 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf python-certifi all 2017.7.27.1-2 [166 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf python-chardet all 3.0.4-1 [80.2 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf python-six all 1.11.0-1 [14.9 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf python-cycler all 0.10.0-1 [7448 B]
Get:131 http://172.17.0.1/private buster-staging/main armhf python-dateutil all 2.6.1-1 [61.1 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf python-debian all 0.1.31 [72.8 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf python-roman all 2.0.0-2 [8130 B]
Get:134 http://172.17.0.1/private buster-staging/main armhf python-docutils all 0.14+dfsg-1 [379 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf python-functools32 all 3.2.3.2-3 [11.0 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf python-idna all 2.5-1 [33.1 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf python-imagesize all 0.7.1-1 [3814 B]
Get:138 http://172.17.0.1/private buster-staging/main armhf python-markupsafe armhf 1.0-1+b1 [13.7 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf python-jinja2 all 2.9.6-1 [117 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf python-matplotlib-data all 2.0.0+dfsg1-2 [4414 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf python-pyparsing all 2.1.10+dfsg1-1 [88.5 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf python-numpy armhf 1:1.13.1-1 [1727 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf python-subprocess32 armhf 3.2.7-2 [28.2 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf python-matplotlib armhf 2.0.0+dfsg1-2+b1 [1530 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf python-pygments all 2.2.0+dfsg-1 [590 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf python-pysam armhf 0.12.0.1+ds-3+rpi1 [1307 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf python-urllib3 all 1.21.1-1 [97.0 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf python-requests all 2.18.1-1 [76.5 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 36.6.0-1 [305 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf python-alabaster all 0.7.8-1 [18.4 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf python-typing all 3.6.2-1 [22.0 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf sphinx-common all 1.6.5-2 [420 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf python-sphinx all 1.6.5-2 [459 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf swig3.0 armhf 3.0.12-1 [1228 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf swig armhf 3.0.12-1 [309 kB]
debconf: delaying package configuration, since apt-utils is not installed
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No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed.
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Setting up libk5crypto3:armhf (1.15.2-2) ...
Setting up python-functools32 (3.2.3.2-3) ...
Setting up libxcb-render0:armhf (1.12-1) ...
Setting up po-debconf (1.0.20) ...
Setting up python-dev (2.7.14-1) ...
Setting up python-certifi (2017.7.27.1-2) ...
Setting up python-tz (2017.2-2) ...
Setting up libx11-6:armhf (2:1.6.4-3) ...
Setting up libpython-all-dev:armhf (2.7.14-1) ...
Setting up python-imagesize (0.7.1-1) ...
Setting up python-alabaster (0.7.8-1) ...
Setting up python-pkg-resources (36.6.0-1) ...
Setting up python-roman (2.0.0-2) ...
Setting up python-markupsafe (1.0-1+b1) ...
Setting up python-numpy (1:1.13.1-1) ...
Setting up cython (0.26.1-0.3+rpi1) ...
Setting up python-six (1.11.0-1) ...
Setting up python-pygments (2.2.0+dfsg-1) ...
Setting up libxcomposite1:armhf (1:0.4.4-2) ...
Setting up libxcb-shm0:armhf (1.12-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libavahi-client3:armhf (0.7-3) ...
Setting up libkrb5-3:armhf (1.15.2-2) ...
Setting up python-subprocess32 (3.2.7-2) ...
Setting up python-all (2.7.14-1) ...
Setting up fontconfig (2.12.3-0.2) ...
Regenerating fonts cache... done.
Setting up python-setuptools (36.6.0-1) ...
Setting up python-urllib3 (1.21.1-1) ...
Setting up python-chardet (3.0.4-1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libxfixes3:armhf (1:5.0.3-1) ...
Setting up python-jinja2 (2.9.6-1) ...
Setting up python-babel (2.4.0+dfsg.1-2) ...
update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up libgdk-pixbuf2.0-0:armhf (2.36.11-1) ...
Setting up python-cycler (0.10.0-1) ...
Setting up libgssapi-krb5-2:armhf (1.15.2-2) ...
Setting up python-dateutil (2.6.1-1) ...
Setting up python-debian (0.1.31) ...
Setting up gtk-update-icon-cache (3.22.24-1+rpi1) ...
Setting up libxcursor1:armhf (1:1.1.14-3) ...
Setting up python-all-dev (2.7.14-1) ...
Setting up libpango-1.0-0:armhf (1.40.12-1) ...
Setting up python-requests (2.18.1-1) ...
Setting up libxrandr2:armhf (2:1.5.1-1) ...
Setting up libcups2:armhf (2.2.5-2) ...
Setting up libxi6:armhf (2:1.7.9-1) ...
Setting up libcairo2:armhf (1.15.8-2) ...
Setting up libxinerama1:armhf (2:1.1.3-1+b3) ...
Setting up libxdamage1:armhf (1:1.1.4-3) ...
Setting up libcurl3-gnutls:armhf (7.56.1-1) ...
Setting up libpangoft2-1.0-0:armhf (1.40.12-1) ...
Setting up libhts2:armhf (1.5-2) ...
Setting up python-pysam (0.12.0.1+ds-3+rpi1) ...
Setting up libpangocairo-1.0-0:armhf (1.40.12-1) ...
Setting up librsvg2-2:armhf (2.40.18-2) ...
Setting up librsvg2-common:armhf (2.40.18-2) ...
Setting up gnome-icon-theme (3.12.0-2) ...
update-alternatives: using /usr/share/icons/gnome/scalable/places/debian-swirl.svg to provide /usr/share/icons/gnome/scalable/places/start-here.svg (start-here.svg) in auto mode
Setting up libgtk2.0-0:armhf (2.24.31-2) ...
Setting up python-matplotlib (2.0.0+dfsg1-2+b1) ...
Processing triggers for sgml-base (1.29) ...
Setting up docutils-common (0.14+dfsg-1) ...
Processing triggers for sgml-base (1.29) ...
Setting up python-docutils (0.14+dfsg-1) ...
update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python-sphinx (1.6.5-2) ...
Setting up dh-autoreconf (14) ...
Setting up dh-strip-nondeterminism (0.040-1) ...
Setting up debhelper (10.10.5) ...
Setting up sbuild-build-depends-htseq-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-17) ...
Processing triggers for libgdk-pixbuf2.0-0:armhf (2.36.11-1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29.1-6+rpi1 dpkg-dev_1.19.0.4 g++-7_7.2.0-12 gcc-7_7.2.0-12 libc6-dev_2.24-17 libstdc++-7-dev_7.2.0-12 libstdc++6_7.2.0-12 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha3 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1+nmu1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-6+rpi1 binutils-arm-linux-gnueabihf_2.29.1-6+rpi1 binutils-common_2.29.1-6+rpi1 bsdmainutils_9.0.14 bsdutils_1:2.30.2-0.1 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-12 cython_0.26.1-0.3+rpi1 dash_0.5.8-2.5 debconf_1.5.64 debhelper_10.10.5 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.1-5 dmsetup_2:1.02.142-1 docutils-common_0.14+dfsg-1 dpkg_1.19.0.4 dpkg-dev_1.19.0.4 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 e2fsprogs-l10n_1.43.7-1 fakeroot_1.22-1 fdisk_2.30.2-0.1 file_1:5.32-1 findutils_4.6.0+git+20170729-2 fontconfig_2.12.3-0.2 fontconfig-config_2.12.3-0.2 fonts-lyx_2.2.3-2 g++_4:7.2.0-1d1 g++-7_7.2.0-12 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-12 gcc-7-base_7.2.0-12 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnome-icon-theme_3.12.0-2 gnupg_2.2.1-5 gnupg-agent_2.2.1-5 gnupg-l10n_2.2.1-5 gnupg-utils_2.2.1-5 gpg_2.2.1-5 gpg-agent_2.2.1-5 gpg-wks-client_2.2.1-5 gpg-wks-server_2.2.1-5 gpgconf_2.2.1-5 gpgsm_2.2.1-5 gpgv_2.2.1-5 grep_3.1-2 groff-base_1.22.3-9 gtk-update-icon-cache_3.22.24-1+rpi1 gzip_1.6-5 hicolor-icon-theme_0.17-1 hostname_3.18 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.1-2 libapt-pkg5.0_1.6~alpha3 libarchive-zip-perl_1.59-1 libasan4_7.2.0-12 libassuan0_2.4.3-3 libatk1.0-0_2.26.0-2 libatk1.0-data_2.26.0-2 libatomic1_7.2.0-12 libattr1_1:2.4.47-2 libaudit-common_1:2.8.1-1 libaudit1_1:2.8.1-1 libavahi-client3_0.7-3 libavahi-common-data_0.7-3 libavahi-common3_0.7-3 libbinutils_2.29.1-6+rpi1 libblas3_3.7.1-4 libblkid1_2.30.2-0.1 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-17 libc-dev-bin_2.24-17 libc6_2.24-17 libc6-dev_2.24-17 libcairo2_1.15.8-2 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.1 libcc1-0_7.2.0-12 libcilkrts5_7.2.0-12 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.5-1 libcups2_2.2.5-2 libcurl3-gnutls_7.56.1-1 libdatrie1_0.2.10-5 libdb5.3_5.3.28-13.1 libdbus-1-3_1.11.22-1 libdebconfclient0_0.232 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.19.0.4 libdrm-common_2.4.84-2+rpi1 libdrm2_2.4.84-2+rpi1 libexpat1_2.2.3-1 libexpat1-dev_2.2.3-1 libfakeroot_1.22-1 libfdisk1_2.30.2-0.1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libfontconfig1_2.12.3-0.2 libfreetype6_2.8.1-0.1 libgcc-7-dev_7.2.0-12 libgcc1_1:7.2.0-12 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libgdk-pixbuf2.0-0_2.36.11-1 libgdk-pixbuf2.0-common_2.36.11-1 libgfortran4_7.2.0-12 libglib2.0-0_2.54.1-1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.16-1 libgomp1_7.2.0-12 libgpg-error0_1.27-4 libgraphite2-3_1.3.10-6 libgssapi-krb5-2_1.15.2-2 libgtk2.0-0_2.24.31-2 libgtk2.0-common_2.24.31-2 libharfbuzz0b_1.6.2-1 libhogweed4_3.3-2 libhts2_1.5-2 libicu57_57.1-8 libidn11_1.33-2 libidn2-0_2.0.2-5 libip4tc0_1.6.1-2+b1 libisl15_0.18-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2 libjs-jquery_3.2.1-1 libjs-jquery-ui_1.12.1+dfsg-5 libjs-sphinxdoc_1.6.5-2 libjs-underscore_1.8.3~dfsg-1 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 liblapack3_3.7.1-4 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.2-0.1 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libncurses5_6.0+20170902-1 libncursesw5_6.0+20170902-1 libnettle6_3.3-2 libnghttp2-14_1.27.0-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpango-1.0-0_1.40.12-1 libpangocairo-1.0-0_1.40.12-1 libpangoft2-1.0-0_1.40.12-1 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.1-2 libpipeline1_1.4.2-1 libpixman-1-0_0.34.0-1 libplymouth4_0.9.3-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3 libpsl5_0.18.0-4 libpython-all-dev_2.7.14-1 libpython-dev_2.7.14-1 libpython-stdlib_2.7.14-1 libpython2.7_2.7.14-2 libpython2.7-dev_2.7.14-2 libpython2.7-minimal_2.7.14-2 libpython2.7-stdlib_2.7.14-2 libreadline7_7.0-3 librsvg2-2_2.40.18-2 librsvg2-common_2.40.18-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsmartcols1_2.30.2-0.1 libsqlite3-0_3.20.1-2 libss2_1.43.7-1 libssh2-1_1.8.0-1 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-12 libstdc++6_7.2.0-12 libsystemd0_235-2 libtasn1-6_4.12-2.1 libthai-data_0.1.27-1 libthai0_0.1.27-1 libtiff5_4.0.8-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170902-1 libtool_2.4.6-2 libubsan0_7.2.0-12 libudev1_235-2 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1+b2 libxcb-render0_1.12-1 libxcb-shm0_1.12-1 libxcb1_1.12-1 libxcomposite1_1:0.4.4-2 libxcursor1_1:1.1.14-3 libxdamage1_1:1.1.4-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxinerama1_2:1.1.3-1+b3 libxml2_2.9.4+dfsg1-5 libxrandr2_2:1.5.1-1 libxrender1_1:0.9.10-1 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mime-support_3.60 mount_2.30.2-0.1 mountall_2.54 multiarch-support_2.24-17 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 openssl_1.1.0f-5 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-2 perl-base_5.26.1-2 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-2 pinentry-curses_1.0.0-3 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.14-1 python-alabaster_0.7.8-1 python-all_2.7.14-1 python-all-dev_2.7.14-1 python-babel_2.4.0+dfsg.1-2 python-babel-localedata_2.4.0+dfsg.1-2 python-certifi_2017.7.27.1-2 python-chardet_3.0.4-1 python-cycler_0.10.0-1 python-dateutil_2.6.1-1 python-debian_0.1.31 python-dev_2.7.14-1 python-docutils_0.14+dfsg-1 python-functools32_3.2.3.2-3 python-idna_2.5-1 python-imagesize_0.7.1-1 python-jinja2_2.9.6-1 python-markupsafe_1.0-1+b1 python-matplotlib_2.0.0+dfsg1-2+b1 python-matplotlib-data_2.0.0+dfsg1-2 python-minimal_2.7.14-1 python-numpy_1:1.13.1-1 python-pkg-resources_36.6.0-1 python-pygments_2.2.0+dfsg-1 python-pyparsing_2.1.10+dfsg1-1 python-pysam_0.12.0.1+ds-3+rpi1 python-requests_2.18.1-1 python-roman_2.0.0-2 python-setuptools_36.6.0-1 python-six_1.11.0-1 python-sphinx_1.6.5-2 python-subprocess32_3.2.7-2 python-typing_3.6.2-1 python-tz_2017.2-2 python-urllib3_1.21.1-1 python2.7_2.7.14-2 python2.7-dev_2.7.14-2 python2.7-minimal_2.7.14-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htseq-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 sgml-base_1.29 shared-mime-info_1.9-2 sphinx-common_1.6.5-2 swig_3.0.12-1 swig3.0_3.0.12-1 systemd_235-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 ttf-bitstream-vera_1.10-8 tzdata_2017c-1 ucf_3.0036 udev_235-2 util-linux_2.30.2-0.1 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 9 14:55:09 2015 UTC
gpgv: using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./htseq_0.6.1p1-4.dsc
dpkg-source: info: extracting htseq in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking htseq_0.6.1p1.orig.tar.xz
dpkg-source: info: unpacking htseq_0.6.1p1-4.debian.tar.xz
dpkg-source: info: applying set-matplotlib-backend.patch
dpkg-source: info: applying fix_version.patch
dpkg-source: info: applying add_sphinx_man_pages.patch
dpkg-source: info: applying skip_tests_with_rounding_differences.patch
dpkg-source: info: applying sphinx_1_3.patch
dpkg-source: info: applying update-pysam-interface.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-c7c287b7-4a52-4d33-8c2e-9566072e870c
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package htseq
dpkg-buildpackage: info: source version 0.6.1p1-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build htseq-0.6.1p1
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from htseq-0.6.1p1/debian/source/options: --extend-diff-ignore=HTSeq\.egg-info/.* --extend-diff-ignore=HTSeq/StepVector\.py --extend-diff-ignore=src/StepVector_wrap\.cxx --extend-diff-ignore=src/_HTSeq\.c
fakeroot debian/rules clean
I: VER=0.6.1p1
dh clean --with python2,sphinxdoc
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
I: VER=0.6.1p1
./clean
rm -rf *.egg-info HTSeq/_version.py
rm example_data/minus.wig example_data/plus.wig
rm: cannot remove 'example_data/minus.wig': No such file or directory
rm: cannot remove 'example_data/plus.wig': No such file or directory
debian/rules:51: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
rm example_data/test.fa example_data/test.fq
rm: cannot remove 'example_data/test.fa': No such file or directory
rm: cannot remove 'example_data/test.fq': No such file or directory
debian/rules:51: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
dh_auto_clean
python setup.py clean -a
/usr/lib/python2.7/dist-packages/setuptools/dist.py:360: UserWarning: The version specified ('0.6.1p1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
"details." % self.metadata.version
running clean
'build/lib.linux-armv8l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv8l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find . -name \*.pyc -exec rm {} \+
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
I: VER=0.6.1p1
dh build-arch --with python2,sphinxdoc
dh_update_autotools_config -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
I: VER=0.6.1p1
./build_it
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
swig -Wall -c++ -python StepVector.i
mv StepVector.py ../HTSeq
cython HTSeq/_HTSeq.pyx -o _HTSeq.c
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
/usr/lib/python2.7/dist-packages/setuptools/dist.py:360: UserWarning: The version specified ('0.6.1p1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
"details." % self.metadata.version
running build
running build_py
creating build
creating build/lib.linux-armv8l-2.7
creating build/lib.linux-armv8l-2.7/HTSeq
copying HTSeq/__init__.py -> build/lib.linux-armv8l-2.7/HTSeq
copying HTSeq/_HTSeq_internal.py -> build/lib.linux-armv8l-2.7/HTSeq
copying HTSeq/StepVector.py -> build/lib.linux-armv8l-2.7/HTSeq
copying HTSeq/_version.py -> build/lib.linux-armv8l-2.7/HTSeq
creating build/lib.linux-armv8l-2.7/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> build/lib.linux-armv8l-2.7/HTSeq/scripts
copying HTSeq/scripts/qa.py -> build/lib.linux-armv8l-2.7/HTSeq/scripts
copying HTSeq/scripts/count.py -> build/lib.linux-armv8l-2.7/HTSeq/scripts
running build_ext
building 'HTSeq._HTSeq' extension
creating build/temp.linux-armv8l-2.7
creating build/temp.linux-armv8l-2.7/src
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/_HTSeq.c -o build/temp.linux-armv8l-2.7/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-LSpDd8/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv8l-2.7/src/_HTSeq.o -o build/lib.linux-armv8l-2.7/HTSeq/_HTSeq.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/StepVector_wrap.cxx -o build/temp.linux-armv8l-2.7/src/StepVector_wrap.o -w
cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-LSpDd8/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv8l-2.7/src/StepVector_wrap.o -o build/lib.linux-armv8l-2.7/HTSeq/_StepVector.so
running build_scripts
creating build/scripts-2.7
copying and adjusting scripts/htseq-qa -> build/scripts-2.7
copying and adjusting scripts/htseq-count -> build/scripts-2.7
changing mode of build/scripts-2.7/htseq-qa from 664 to 775
changing mode of build/scripts-2.7/htseq-count from 664 to 775
# build the man pages for the binary package
python setup.py build_sphinx -b man
/usr/lib/python2.7/dist-packages/setuptools/dist.py:360: UserWarning: The version specified ('0.6.1p1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
"details." % self.metadata.version
running build_sphinx
creating /<<PKGBUILDDIR>>/build/sphinx
creating /<<PKGBUILDDIR>>/build/sphinx/doctrees
creating /<<PKGBUILDDIR>>/build/sphinx/man
Running Sphinx v1.6.5
loading pickled environment... not yet created
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: 16 added, 0 changed, 0 removed
reading sources... [ 6%] alignments
reading sources... [ 12%] contrib
reading sources... [ 18%] count
reading sources... [ 25%] counting
reading sources... [ 31%] features
reading sources... [ 37%] genomic
reading sources... [ 43%] history
reading sources... [ 50%] index
reading sources... [ 56%] install
reading sources... [ 62%] misc
reading sources... [ 68%] otherparsers
reading sources... [ 75%] overview
reading sources... [ 81%] qa
reading sources... [ 87%] sequences
reading sources... [ 93%] tour
reading sources... [100%] tss
/<<PKGBUILDDIR>>/doc/tss.rst:356: WARNING: Inline substitution_reference start-string without end-string.
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... htseq-qa.1 { } htseq-count.1 { }
build succeeded, 1 warning.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
I: VER=0.6.1p1
echo "testing on architecture arm"
testing on architecture arm
python2.7 test/test.py
Doctest of features.rst:
All 7 tests passed.
Doctest of genomic.rst:
All 26 tests passed.
Doctest of otherparsers.rst:
All 1 tests passed.
Doctest of tss.rst:
**********************************************************************
File "../doc/tss.rst", line 114, in tss.rst
Failed example:
wincvg
Expected:
array([0, 0, 0, ..., 0, 0, 0], dtype=int32)
Got:
array([0, 0, 0, ..., 0, 0, 0])
**********************************************************************
1 items had failures:
1 of 37 in tss.rst
***Test Failed*** 1 failures.
1 of 37 tests failed.
Doctest of misc.rst:
All 1 tests passed.
Doctest of count.rst:
All 0 tests passed.
Doctest of index.rst:
All 0 tests passed.
Doctest of install.rst:
All 0 tests passed.
Doctest of qa.rst:
All 0 tests passed.
Doctest of overview.rst:
All 0 tests passed.
Doctest of history.rst:
All 0 tests passed.
Doctest of counting.rst:
All 0 tests passed.
Doctest of tour.rst:
All 80 tests passed.
Doctest of contrib.rst:
All 0 tests passed.
Doctest of sequences.rst:
All 46 tests passed.
Doctest of alignments.rst:
All 6 tests passed.
Not all tests passed.
debian/rules:19: recipe for target 'test-python2.7' failed
make[1]: *** [test-python2.7] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules:15: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2017-11-09T04:00:32Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 81652
Build-Time: 216
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 751
Job: htseq_0.6.1p1-4
Machine Architecture: armhf
Package: htseq
Package-Time: 992
Source-Version: 0.6.1p1-4
Space: 81652
Status: attempted
Version: 0.6.1p1-4
--------------------------------------------------------------------------------
Finished at 2017-11-09T04:00:32Z
Build needed 00:16:32, 81652k disk space