Raspbian Package Auto-Building

Build log for htseq (0.5.4p3-2) on armhf

htseq0.5.4p3-2armhf → 2013-09-18 10:07:32

sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testwandboard

╔══════════════════════════════════════════════════════════════════════════════╗
║ htseq 0.5.4p3-2 (armhf)                                    18 Sep 2013 09:53 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: htseq
Version: 0.5.4p3-2
Source Version: 0.5.4p3-2
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/htseq-sqqL1e/htseq-0.5.4p3' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/htseq-sqqL1e' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-3450af77-b648-464f-9e25-a551200fb3f9' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Get:1 http://172.17.0.1 jessie-staging Release.gpg [490 B]
Get:2 http://172.17.0.1 jessie-staging Release [10.8 kB]
Get:3 http://172.17.0.1 jessie-staging/main Sources [6892 kB]
Get:4 http://172.17.0.1 jessie-staging/main armhf Packages [7998 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 14.9 MB in 1min 21s (183 kB/s)
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Check APT
─────────

Checking available source versions...

Download source files with APT
──────────────────────────────

Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'htseq' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/python-htseq.git
Need to get 532 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main htseq 0.5.4p3-2 (dsc) [1526 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main htseq 0.5.4p3-2 (tar) [527 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main htseq 0.5.4p3-2 (diff) [3585 B]
Fetched 532 kB in 0s (729 kB/s)
Download complete and in download only mode

Check arch
──────────

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-rwfaFQ/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 0 B/704 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11274 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), python-setuptools (>= 0.6b3), python-all-dev (>= 2.6.5), python-sphinx, python-numpy (>= 1:1.3.0), swig, cython (>= 0.11)
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), python-setuptools (>= 0.6b3), python-all-dev (>= 2.6.5), python-sphinx, python-numpy (>= 1:1.3.0), swig, cython (>= 0.11)
dpkg-deb: building package `sbuild-build-depends-htseq-dummy' in `/«BUILDDIR»/resolver-kZFrTr/apt_archive/sbuild-build-depends-htseq-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install htseq build dependencies (apt-based resolver)                        │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils cython debhelper docutils-common file gettext gettext-base
  groff-base intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1
  libexpat1-dev libffi6 libgfortran3 libglib2.0-0 libjs-jquery libjs-sphinxdoc
  libjs-underscore liblapack3 libmagic1 libpipeline1 libpython-all-dev
  libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
  libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.0.0
  libunistring0 libxml2 man-db mime-support po-debconf python python-all
  python-all-dev python-dev python-docutils python-jinja2 python-markupsafe
  python-minimal python-numpy python-pkg-resources python-pygments
  python-roman python-setuptools python-sphinx python-support python2.7
  python2.7-dev python2.7-minimal sgml-base sphinx-common swig swig2.0
  xml-core
Suggested packages:
  wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
  libmail-box-perl python-doc python-tk texlive-latex-recommended
  texlive-latex-base texlive-lang-french fonts-linuxlibertine
  ttf-linux-libertine python-jinja2-doc python-numpy-doc python-numpy-dbg
  python-nose gfortran python-distribute python-distribute-doc
  ttf-bitstream-vera jsmath libjs-mathjax dvipng texlive-latex-extra
  texlive-fonts-recommended python2.7-doc binfmt-support sgml-base-doc
  swig-doc swig-examples swig2.0-examples swig2.0-doc
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  libglib2.0-data shared-mime-info javascript-common libmail-sendmail-perl
  python-imaging libpaper-utils python-lxml docutils-doc python-chardet
  sphinx-doc
The following NEW packages will be installed:
  bsdmainutils cython debhelper docutils-common file gettext gettext-base
  groff-base intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1
  libexpat1-dev libffi6 libgfortran3 libglib2.0-0 libjs-jquery libjs-sphinxdoc
  libjs-underscore liblapack3 libmagic1 libpipeline1 libpython-all-dev
  libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
  libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.0.0
  libunistring0 libxml2 man-db mime-support po-debconf python python-all
  python-all-dev python-dev python-docutils python-jinja2 python-markupsafe
  python-minimal python-numpy python-pkg-resources python-pygments
  python-roman python-setuptools python-sphinx python-support python2.7
  python2.7-dev python2.7-minimal sbuild-build-depends-htseq-dummy sgml-base
  sphinx-common swig swig2.0 xml-core
0 upgraded, 61 newly installed, 0 to remove and 5 not upgraded.
Need to get 58.7 MB/58.7 MB of archives.
After this operation, 118 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.4-1 [36.9 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1e-2+rpi1 [1049 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-3 [666 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-2 [949 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.1-1 [29.4 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libpython2.7-minimal armhf 2.7.5-5 [520 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main mime-support all 3.54 [36.4 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.8.0.2-1 [397 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libpython2.7-stdlib armhf 2.7.5-5 [2413 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libpython2.7 armhf 2.7.5-5 [1159 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main python2.7-minimal armhf 2.7.5-5 [1196 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.4-1 [1907 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.8.1-6+rpi1 [229 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libexpat1-dev armhf 2.1.0-4 [210 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libpython2.7-dev armhf 2.7.5-5 [30.6 MB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main sgml-base all 1.26+nmu4 [14.6 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.1-1 [136 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main python2.7 armhf 2.7.5-5 [229 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main python-minimal armhf 2.7.5-4 [42.7 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libpython-stdlib armhf 2.7.5-4 [19.7 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main python armhf 2.7.5-4 [179 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main python-support all 1.0.15 [33.6 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main cython armhf 0.19+git51-g3078752-1 [1522 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.1-1 [1837 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20130720 [671 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main xml-core all 0.13+nmu2 [24.2 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main docutils-common all 0.10-3 [210 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libblas3 armhf 1.2.20110419-5 [201 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main libjs-jquery all 1.7.2+dfsg-3 [96.9 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libjs-underscore all 1.4.4-2 [49.1 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libjs-sphinxdoc all 1.1.3+dfsg-8 [44.5 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main liblapack3 armhf 3.4.2+dfsg-1 [3584 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libpython-dev armhf 2.7.5-4 [19.8 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libpython-all-dev armhf 2.7.5-4 [902 B]
Get:45 http://172.17.0.1/private/ jessie-staging/main python-all armhf 2.7.5-4 [872 B]
Get:46 http://172.17.0.1/private/ jessie-staging/main python2.7-dev armhf 2.7.5-5 [277 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main python-dev armhf 2.7.5-4 [1078 B]
Get:48 http://172.17.0.1/private/ jessie-staging/main python-all-dev armhf 2.7.5-4 [896 B]
Get:49 http://172.17.0.1/private/ jessie-staging/main python-roman all 1.4.0-2 [7266 B]
Get:50 http://172.17.0.1/private/ jessie-staging/main python-docutils all 0.10-3 [428 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main python-markupsafe armhf 0.18-1 [14.1 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main python-jinja2 all 2.7.1-1 [170 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main python-numpy armhf 1:1.7.1-3 [1926 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main python-pkg-resources all 0.6.49-2 [62.5 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main python-pygments all 1.6+dfsg-1 [547 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main python-setuptools all 0.6.49-2 [320 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main sphinx-common all 1.1.3+dfsg-8 [419 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main python-sphinx all 1.1.3+dfsg-8 [312 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main swig2.0 armhf 2.0.9-1 [1379 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main swig armhf 2.0.9-1 [280 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 58.7 MB in 4min 4s (240 kB/s)
Selecting previously unselected package libpipeline1:armhf.
(Reading database ... 11274 files and directories currently installed.)
Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.4-1_armhf.deb) ...
Selecting previously unselected package libssl1.0.0:armhf.
Unpacking libssl1.0.0:armhf (from .../libssl1.0.0_1.0.1e-2+rpi1_armhf.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.22.2-3_armhf.deb) ...
Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_armhf.deb) ...
Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.5-2_armhf.deb) ...
Selecting previously unselected package libasprintf0c2:armhf.
Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.3.1-1_armhf.deb) ...
Selecting previously unselected package libmagic1:armhf.
Unpacking libmagic1:armhf (from .../libmagic1_1%3a5.14-2_armhf.deb) ...
Selecting previously unselected package libpython2.7-minimal.
Unpacking libpython2.7-minimal (from .../libpython2.7-minimal_2.7.5-5_armhf.deb) ...
Selecting previously unselected package mime-support.
Unpacking mime-support (from .../mime-support_3.54_all.deb) ...
Selecting previously unselected package libexpat1:armhf.
Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-4_armhf.deb) ...
Selecting previously unselected package libffi6:armhf.
Unpacking libffi6:armhf (from .../libffi6_3.0.13-4_armhf.deb) ...
Selecting previously unselected package libsqlite3-0:armhf.
Unpacking libsqlite3-0:armhf (from .../libsqlite3-0_3.8.0.2-1_armhf.deb) ...
Selecting previously unselected package libpython2.7-stdlib.
Unpacking libpython2.7-stdlib (from .../libpython2.7-stdlib_2.7.5-5_armhf.deb) ...
Selecting previously unselected package libpython2.7.
Unpacking libpython2.7 (from .../libpython2.7_2.7.5-5_armhf.deb) ...
Selecting previously unselected package libxml2:armhf.
Unpacking libxml2:armhf (from .../libxml2_2.9.1+dfsg1-3_armhf.deb) ...
Selecting previously unselected package python2.7-minimal.
Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.5-5_armhf.deb) ...
Selecting previously unselected package libglib2.0-0:armhf.
Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.36.4-1_armhf.deb) ...
Selecting previously unselected package libcroco3:armhf.
Unpacking libcroco3:armhf (from .../libcroco3_0.6.8-2_armhf.deb) ...
Selecting previously unselected package libgfortran3:armhf.
Unpacking libgfortran3:armhf (from .../libgfortran3_4.8.1-6+rpi1_armhf.deb) ...
Selecting previously unselected package libexpat1-dev:armhf.
Unpacking libexpat1-dev:armhf (from .../libexpat1-dev_2.1.0-4_armhf.deb) ...
Selecting previously unselected package libpython2.7-dev.
Unpacking libpython2.7-dev (from .../libpython2.7-dev_2.7.5-5_armhf.deb) ...
Selecting previously unselected package libunistring0:armhf.
Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ...
Selecting previously unselected package sgml-base.
Unpacking sgml-base (from .../sgml-base_1.26+nmu4_all.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../file_1%3a5.14-2_armhf.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.3.1-1_armhf.deb) ...
Selecting previously unselected package python2.7.
Unpacking python2.7 (from .../python2.7_2.7.5-5_armhf.deb) ...
Selecting previously unselected package python-minimal.
Unpacking python-minimal (from .../python-minimal_2.7.5-4_armhf.deb) ...
Selecting previously unselected package libpython-stdlib:armhf.
Unpacking libpython-stdlib:armhf (from .../libpython-stdlib_2.7.5-4_armhf.deb) ...
Selecting previously unselected package python.
Unpacking python (from .../python_2.7.5-4_armhf.deb) ...
Selecting previously unselected package python-support.
Unpacking python-support (from .../python-support_1.0.15_all.deb) ...
Selecting previously unselected package cython.
Unpacking cython (from .../cython_0.19+git51-g3078752-1_armhf.deb) ...
Selecting previously unselected package gettext.
Unpacking gettext (from .../gettext_0.18.3.1-1_armhf.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
Unpacking debhelper (from .../debhelper_9.20130720_all.deb) ...
Selecting previously unselected package xml-core.
Unpacking xml-core (from .../xml-core_0.13+nmu2_all.deb) ...
Selecting previously unselected package docutils-common.
Unpacking docutils-common (from .../docutils-common_0.10-3_all.deb) ...
Selecting previously unselected package libblas3.
Unpacking libblas3 (from .../libblas3_1.2.20110419-5_armhf.deb) ...
Selecting previously unselected package libjs-jquery.
Unpacking libjs-jquery (from .../libjs-jquery_1.7.2+dfsg-3_all.deb) ...
Selecting previously unselected package libjs-underscore.
Unpacking libjs-underscore (from .../libjs-underscore_1.4.4-2_all.deb) ...
Selecting previously unselected package libjs-sphinxdoc.
Unpacking libjs-sphinxdoc (from .../libjs-sphinxdoc_1.1.3+dfsg-8_all.deb) ...
Selecting previously unselected package liblapack3.
Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-1_armhf.deb) ...
Selecting previously unselected package libpython-dev:armhf.
Unpacking libpython-dev:armhf (from .../libpython-dev_2.7.5-4_armhf.deb) ...
Selecting previously unselected package libpython-all-dev:armhf.
Unpacking libpython-all-dev:armhf (from .../libpython-all-dev_2.7.5-4_armhf.deb) ...
Selecting previously unselected package python-all.
Unpacking python-all (from .../python-all_2.7.5-4_armhf.deb) ...
Selecting previously unselected package python2.7-dev.
Unpacking python2.7-dev (from .../python2.7-dev_2.7.5-5_armhf.deb) ...
Selecting previously unselected package python-dev.
Unpacking python-dev (from .../python-dev_2.7.5-4_armhf.deb) ...
Selecting previously unselected package python-all-dev.
Unpacking python-all-dev (from .../python-all-dev_2.7.5-4_armhf.deb) ...
Selecting previously unselected package python-roman.
Unpacking python-roman (from .../python-roman_1.4.0-2_all.deb) ...
Selecting previously unselected package python-docutils.
Unpacking python-docutils (from .../python-docutils_0.10-3_all.deb) ...
Selecting previously unselected package python-markupsafe.
Unpacking python-markupsafe (from .../python-markupsafe_0.18-1_armhf.deb) ...
Selecting previously unselected package python-jinja2.
Unpacking python-jinja2 (from .../python-jinja2_2.7.1-1_all.deb) ...
Selecting previously unselected package python-numpy.
Unpacking python-numpy (from .../python-numpy_1%3a1.7.1-3_armhf.deb) ...
Selecting previously unselected package python-pkg-resources.
Unpacking python-pkg-resources (from .../python-pkg-resources_0.6.49-2_all.deb) ...
Selecting previously unselected package python-pygments.
Unpacking python-pygments (from .../python-pygments_1.6+dfsg-1_all.deb) ...
Selecting previously unselected package python-setuptools.
Unpacking python-setuptools (from .../python-setuptools_0.6.49-2_all.deb) ...
Selecting previously unselected package sphinx-common.
Unpacking sphinx-common (from .../sphinx-common_1.1.3+dfsg-8_all.deb) ...
Selecting previously unselected package python-sphinx.
Unpacking python-sphinx (from .../python-sphinx_1.1.3+dfsg-8_all.deb) ...
Selecting previously unselected package swig2.0.
Unpacking swig2.0 (from .../swig2.0_2.0.9-1_armhf.deb) ...
Selecting previously unselected package swig.
Unpacking swig (from .../swig_2.0.9-1_armhf.deb) ...
Selecting previously unselected package sbuild-build-depends-htseq-dummy.
Unpacking sbuild-build-depends-htseq-dummy (from .../sbuild-build-depends-htseq-dummy.deb) ...
Setting up libpipeline1:armhf (1.2.4-1) ...
Setting up libssl1.0.0:armhf (1.0.1e-2+rpi1) ...
Setting up groff-base (1.22.2-3) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.18.3.1-1) ...
Setting up libmagic1:armhf (1:5.14-2) ...
Setting up libpython2.7-minimal (2.7.5-5) ...
Setting up mime-support (3.54) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
Setting up libexpat1:armhf (2.1.0-4) ...
Setting up libffi6:armhf (3.0.13-4) ...
Setting up libsqlite3-0:armhf (3.8.0.2-1) ...
Setting up libpython2.7-stdlib (2.7.5-5) ...
Setting up libpython2.7 (2.7.5-5) ...
Setting up libxml2:armhf (2.9.1+dfsg1-3) ...
Setting up python2.7-minimal (2.7.5-5) ...
Setting up libglib2.0-0:armhf (2.36.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libgfortran3:armhf (4.8.1-6+rpi1) ...
Setting up libexpat1-dev:armhf (2.1.0-4) ...
Setting up libpython2.7-dev (2.7.5-5) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up sgml-base (1.26+nmu4) ...
Setting up file (1:5.14-2) ...
Setting up gettext-base (0.18.3.1-1) ...
Setting up python2.7 (2.7.5-5) ...
Setting up python-minimal (2.7.5-4) ...
Setting up libpython-stdlib:armhf (2.7.5-4) ...
Setting up python (2.7.5-4) ...
Setting up python-support (1.0.15) ...
Setting up cython (0.19+git51-g3078752-1) ...
Setting up gettext (0.18.3.1-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20130720) ...
Setting up xml-core (0.13+nmu2) ...
Setting up libblas3 (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libjs-jquery (1.7.2+dfsg-3) ...
Setting up libjs-underscore (1.4.4-2) ...
Setting up libjs-sphinxdoc (1.1.3+dfsg-8) ...
Setting up liblapack3 (3.4.2+dfsg-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libpython-dev:armhf (2.7.5-4) ...
Setting up libpython-all-dev:armhf (2.7.5-4) ...
Setting up python-all (2.7.5-4) ...
Setting up python2.7-dev (2.7.5-5) ...
Setting up python-dev (2.7.5-4) ...
Setting up python-all-dev (2.7.5-4) ...
Setting up python-roman (1.4.0-2) ...
Setting up python-markupsafe (0.18-1) ...
Setting up python-jinja2 (2.7.1-1) ...
Setting up python-numpy (1:1.7.1-3) ...
Setting up python-pkg-resources (0.6.49-2) ...
Setting up python-pygments (1.6+dfsg-1) ...
Setting up python-setuptools (0.6.49-2) ...
Setting up sphinx-common (1.1.3+dfsg-8) ...
Setting up swig2.0 (2.0.9-1) ...
Setting up swig (2.0.9-1) ...
Processing triggers for sgml-base ...
Setting up docutils-common (0.10-3) ...
Processing triggers for sgml-base ...
Setting up python-docutils (0.10-3) ...
update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python-sphinx (1.1.3+dfsg-8) ...
Setting up sbuild-build-depends-htseq-dummy (0.invalid.0) ...
Processing triggers for libc-bin ...
Processing triggers for python-support ...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.11.0-armv7-x13 armhf (armv7l)
Toolchain package versions: binutils_2.23.52.20130612-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-2+rpi1 gcc-4.6_4.6.4-2+rpi1 libc6-dev_2.17-7+rpi1+b1 libstdc++6_4.8.1-6+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 linux-libc-dev_3.10.1-1+rpi1+b1
Package versions: apt_0.9.7.8+rpi1 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.23.52.20130612-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2+rpi1 cython_0.19+git51-g3078752-1 dash_0.5.7-3 debconf_1.5.51 debfoster_2.7-1.2 debhelper_9.20130720 debianutils_4.4 diffutils_1:3.2-8 docutils-common_0.10-3 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-6 g++_4:4.6.3-8 g++-4.6_4.6.4-2+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-2+rpi1 gcc-4.6-base_4.6.4-2+rpi1 gcc-4.7-base_4.7.3-4+rpi1 gcc-4.8-base_4.8.1-6+rpi1 gettext_0.18.3.1-1 gettext-base_0.18.3.1-1 gnupg_1.4.14-1 gpgv_1.4.14-1 grep_2.14-3 groff-base_1.22.2-3 gzip_1.6-2 hostname_3.13 initramfs-tools_0.113 initscripts_2.88dsf-43 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.52-1 libapt-pkg4.12_0.9.7.8+rpi1 libarchive-extract-perl_0.68-1 libasprintf0c2_0.18.3.1-1 libattr1_1:2.4.47-1 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libc-bin_2.17-7+rpi1+b1 libc-dev-bin_2.17-7+rpi1+b1 libc6_2.17-7+rpi1+b1 libc6-dev_2.17-7+rpi1+b1 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdbus-1-3_1.6.12-1 libdpkg-perl_1.16.10 libexpat1_2.1.0-4 libexpat1-dev_2.1.0-4 libffi6_3.0.13-4 libgc1c2_1:7.2d-5 libgcc1_1:4.8.1-6+rpi1 libgdbm3_1.8.3-12 libgfortran3_4.8.1-6+rpi1 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.2+dfsg-2 libgomp1_4.8.1-6+rpi1 libjs-jquery_1.7.2+dfsg-3 libjs-sphinxdoc_1.1.3+dfsg-8 libjs-underscore_1.4.4-2 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblapack3_3.4.2+dfsg-1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmodule-pluggable-perl_4.7-1 libmount1_2.20.1-5.5 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnih-dbus1_1.0.3-4.1+b1 libnih1_1.0.3-4.1+b1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpipeline1_1.2.4-1 libpod-latex-perl_0.61-1 libprocps0_1:3.3.4-2 libpython-all-dev_2.7.5-4 libpython-dev_2.7.5-4 libpython-stdlib_2.7.5-4 libpython2.7_2.7.5-5 libpython2.7-dev_2.7.5-5 libpython2.7-minimal_2.7.5-5 libpython2.7-stdlib_2.7.5-5 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libsqlite3-0_3.8.0.2-1 libss2_1.42.8-1 libssl1.0.0_1.0.1e-2+rpi1 libstdc++6_4.8.1-6+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 libswitch-perl_2.16-2 libterm-ui-perl_0.36-1 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libxml2_2.9.1+dfsg1-3 linux-libc-dev_3.10.1-1+rpi1+b1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 make_3.81-8.2 makedev_2.3.1-93 man-db_2.6.5-2 mawk_1.3.3-17 mime-support_3.54 mount_2.20.1-5.5 mountall_2.49 multiarch-support_2.17-7+rpi1+b1 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-3 perl_5.18.1-3 perl-base_5.18.1-3 perl-modules_5.18.1-3 plymouth_0.8.8-6+deb8u1 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 python_2.7.5-4 python-all_2.7.5-4 python-all-dev_2.7.5-4 python-dev_2.7.5-4 python-docutils_0.10-3 python-jinja2_2.7.1-1 python-markupsafe_0.18-1 python-minimal_2.7.5-4 python-numpy_1:1.7.1-3 python-pkg-resources_0.6.49-2 python-pygments_1.6+dfsg-1 python-roman_1.4.0-2 python-setuptools_0.6.49-2 python-sphinx_1.1.3+dfsg-8 python-support_1.0.15 python2.7_2.7.5-5 python2.7-dev_2.7.5-5 python2.7-minimal_2.7.5-5 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htseq-dummy_0.invalid.0 sed_4.2.2-2 sensible-utils_0.0.9 sgml-base_1.26+nmu4 sphinx-common_1.1.3+dfsg-8 swig_2.0.9-1 swig2.0_2.0.9-1 sysv-rc_2.88dsf-43 sysvinit_2.88dsf-43 sysvinit-utils_2.88dsf-43 tar_1.26+dfsg-8 tzdata_2013d-1 udev_175-7.2 util-linux_2.20.1-5.5 xml-core_0.13+nmu2 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Sep  5 19:22:27 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./htseq_0.5.4p3-2.dsc
dpkg-source: info: extracting htseq in htseq-0.5.4p3
dpkg-source: info: unpacking htseq_0.5.4p3.orig.tar.gz
dpkg-source: info: unpacking htseq_0.5.4p3-2.debian.tar.gz
dpkg-source: info: applying fix_version.patch
dpkg-source: info: applying add_sphinx_man_pages.patch

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=root
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-3450af77-b648-464f-9e25-a551200fb3f9
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=192.168.1.2 55816 22
SSH_CONNECTION=192.168.1.2 55816 192.168.1.46 22
SSH_TTY=/dev/pts/1
TERM=xterm
USER=root
_=/etc/init.d/buildd

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package htseq
dpkg-buildpackage: source version 0.5.4p3-2
 dpkg-source --before-build htseq-0.5.4p3
dpkg-buildpackage: host architecture armhf
dpkg-source: info: using options from htseq-0.5.4p3/debian/source/options: --extend-diff-ignore=HTSeq\.egg-info/.* --extend-diff-ignore=HTSeq/StepVector\.py --extend-diff-ignore=src/StepVector_wrap\.cxx --extend-diff-ignore=src/_HTSeq\.c
 fakeroot debian/rules clean
dh clean --with python2,sphinxdoc
   dh_testdir
   debian/rules override_dh_auto_clean
make[1]: Entering directory `/«PKGBUILDDIR»'
make -C src clean
make[2]: Entering directory `/«PKGBUILDDIR»/src'
rm -f StepVector_wrap.cxx ../HTSeq/StepVector.py _HTSeq.c
make[2]: Leaving directory `/«PKGBUILDDIR»/src'
rm -rf dist build MANIFEST
rm -rf *.egg-info
dh_auto_clean
running clean
'build/lib.linux-armv7l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
make[1]: Leaving directory `/«PKGBUILDDIR»'
   dh_clean
 debian/rules build-arch
dh build-arch --with python2,sphinxdoc
   dh_testdir -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory `/«PKGBUILDDIR»'
make -C src
make[2]: Entering directory `/«PKGBUILDDIR»/src'
swig -Wall -c++ -python StepVector.i 
mv StepVector.py ../HTSeq
cython HTSeq/_HTSeq.pyx -o _HTSeq.c
make[2]: Leaving directory `/«PKGBUILDDIR»/src'
python setup.py build
running build
running build_py
creating build
creating build/lib.linux-armv7l-2.7
creating build/lib.linux-armv7l-2.7/HTSeq
copying HTSeq/__init__.py -> build/lib.linux-armv7l-2.7/HTSeq
copying HTSeq/_HTSeq_internal.py -> build/lib.linux-armv7l-2.7/HTSeq
copying HTSeq/StepVector.py -> build/lib.linux-armv7l-2.7/HTSeq
copying HTSeq/_version.py -> build/lib.linux-armv7l-2.7/HTSeq
creating build/lib.linux-armv7l-2.7/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> build/lib.linux-armv7l-2.7/HTSeq/scripts
copying HTSeq/scripts/qa.py -> build/lib.linux-armv7l-2.7/HTSeq/scripts
copying HTSeq/scripts/count.py -> build/lib.linux-armv7l-2.7/HTSeq/scripts
running build_ext
building 'HTSeq._HTSeq' extension
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/src
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/pymodules/python2.7/numpy/core/include -I/usr/include/python2.7 -c src/_HTSeq.c -o build/temp.linux-armv7l-2.7/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 build/temp.linux-armv7l-2.7/src/_HTSeq.o -o build/lib.linux-armv7l-2.7/HTSeq/_HTSeq.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.7 -c src/StepVector_wrap.cxx -o build/temp.linux-armv7l-2.7/src/StepVector_wrap.o -w
cc1plus: warning: command line option '-Wstrict-prototypes' is valid for Ada/C/ObjC but not for C++ [enabled by default]
c++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 build/temp.linux-armv7l-2.7/src/StepVector_wrap.o -o build/lib.linux-armv7l-2.7/HTSeq/_StepVector.so
running build_scripts
creating build/scripts-2.7
copying and adjusting scripts/htseq-qa -> build/scripts-2.7
copying and adjusting scripts/htseq-count -> build/scripts-2.7
changing mode of build/scripts-2.7/htseq-qa from 664 to 775
changing mode of build/scripts-2.7/htseq-count from 664 to 775
# build the man pages for the binary package
python setup.py build_sphinx -b man
running build_sphinx
creating build/sphinx
creating build/sphinx/doctrees
creating build/sphinx/man
Running Sphinx v1.1.3
loading pickled environment... not yet created
building [man]: all manpages
updating environment: 14 added, 0 changed, 0 removed
reading sources... [  7%] alignments
reading sources... [ 14%] contrib
reading sources... [ 21%] count
reading sources... [ 28%] features
reading sources... [ 35%] genomic
reading sources... [ 42%] history
reading sources... [ 50%] index
reading sources... [ 57%] install
reading sources... [ 64%] misc
reading sources... [ 71%] overview
reading sources... [ 78%] qa
reading sources... [ 85%] sequences
reading sources... [ 92%] tour
reading sources... [100%] tss

/«PKGBUILDDIR»/doc/features.rst:190: ERROR: Unknown interpreted text role "attribute".
/«PKGBUILDDIR»/doc/features.rst:212: ERROR: Unknown interpreted text role "attribute".
/«PKGBUILDDIR»/doc/features.rst:239: ERROR: Unknown interpreted text role "attribute".
/«PKGBUILDDIR»/doc/genomic.rst:176: ERROR: Unknown interpreted text role "method".
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... htseq-qa.1 { } htseq-count.1 { } 
build succeeded, 4 warnings.
make[1]: Leaving directory `/«PKGBUILDDIR»'
   debian/rules override_dh_auto_test
make[1]: Entering directory `/«PKGBUILDDIR»'
python2.7 setup.py test -vv
running test
dh override_dh_auto_test --with python2,sphinxdoc
make[1]: Leaving directory `/«PKGBUILDDIR»'
 fakeroot debian/rules binary-arch
dh binary-arch --with python2,sphinxdoc
   dh_testroot -a
   dh_prep -a
   dh_auto_install -a
running install
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /«PKGBUILDDIR»/debian/tmp
creating /«PKGBUILDDIR»/debian/tmp/usr
creating /«PKGBUILDDIR»/debian/tmp/usr/lib
creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7
creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages
creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
copying build/lib.linux-armv7l-2.7/HTSeq/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
copying build/lib.linux-armv7l-2.7/HTSeq/_HTSeq_internal.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
copying build/lib.linux-armv7l-2.7/HTSeq/StepVector.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
copying build/lib.linux-armv7l-2.7/HTSeq/_version.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying build/lib.linux-armv7l-2.7/HTSeq/scripts/__init__.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying build/lib.linux-armv7l-2.7/HTSeq/scripts/qa.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying build/lib.linux-armv7l-2.7/HTSeq/scripts/count.py -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq/scripts
copying build/lib.linux-armv7l-2.7/HTSeq/_HTSeq.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
copying build/lib.linux-armv7l-2.7/HTSeq/_StepVector.so -> /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq
running install_egg_info
running egg_info
creating HTSeq.egg-info
writing HTSeq.egg-info/PKG-INFO
writing top-level names to HTSeq.egg-info/top_level.txt
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'example_data'
no previously-included directories found matching 'test'
warning: no previously-included files found matching 'todo.txt'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info
running install_scripts
creating /«PKGBUILDDIR»/debian/tmp/usr/bin
copying build/scripts-2.7/htseq-qa -> /«PKGBUILDDIR»/debian/tmp/usr/bin
copying build/scripts-2.7/htseq-count -> /«PKGBUILDDIR»/debian/tmp/usr/bin
changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/htseq-qa to 775
changing mode of /«PKGBUILDDIR»/debian/tmp/usr/bin/htseq-count to 775
   dh_install -a
   dh_installdocs -a
   debian/rules override_dh_sphinxdoc-arch
make[1]: Entering directory `/«PKGBUILDDIR»'
# dh_sphinxdoc doesn't fail silently when there are no docs
make[1]: Leaving directory `/«PKGBUILDDIR»'
   debian/rules override_dh_installchangelogs
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_installchangelogs -k doc/history.rst
make[1]: Leaving directory `/«PKGBUILDDIR»'
   dh_installman -a
   dh_python2 -a
   dh_perl -a
   dh_link -a
   dh_compress -a
   dh_fixperms -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-htseq: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-htseq: unused substitution variable ${python:Versions}
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package `python-htseq' in `../python-htseq_0.5.4p3-2_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../htseq_0.5.4p3-2_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build htseq-0.5.4p3
dpkg-source: info: using options from htseq-0.5.4p3/debian/source/options: --extend-diff-ignore=HTSeq\.egg-info/.* --extend-diff-ignore=HTSeq/StepVector\.py --extend-diff-ignore=src/StepVector_wrap\.cxx --extend-diff-ignore=src/_HTSeq\.c
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130918-1007

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


htseq_0.5.4p3-2_armhf.changes:
──────────────────────────────

Format: 1.8
Date: Thu, 05 Sep 2013 10:02:53 -0700
Source: htseq
Binary: python-htseq python-htseq-doc
Architecture: armhf
Version: 0.5.4p3-2
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Diane Trout <diane@ghic.org>
Description: 
 python-htseq - high-throughput genome sequencing read analysis utilities
 python-htseq-doc - documetation for HTSeq (high-throughput genome sequencing)
Closes: 721780
Changes: 
 htseq (0.5.4p3-2) unstable; urgency=low
 .
   [ Andreas Tille ]
   * debian/control:
      - add myself to Uploaders
      - cme fix dpkg-control
 .
   [ Diane Trout ]
   * build man pages in binary target and html pages in independent.
   * disable dh_sphinxinstall for binary build.
     Closes: #721780
Checksums-Sha1: 
 160ba7ca2c9c7a7da3df2e1010eda3159df4430b 201552 python-htseq_0.5.4p3-2_armhf.deb
Checksums-Sha256: 
 b8222b2f45fbe43949fe7fc04a6ee682ca4d7e0ed4167c83e9c3b07e755972a4 201552 python-htseq_0.5.4p3-2_armhf.deb
Files: 
 a9bacf784cce5c75ea70da2e3988550e 201552 python optional python-htseq_0.5.4p3-2_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


python-htseq_0.5.4p3-2_armhf.deb
────────────────────────────────

 new debian package, version 2.0.
 size 201552 bytes: control archive=1605 bytes.
     920 bytes,    21 lines      control              
    1518 bytes,    20 lines      md5sums              
     162 bytes,     9 lines   *  postinst             #!/bin/sh
     261 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-htseq
 Source: htseq
 Version: 0.5.4p3-2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 526
 Depends: python (>= 2.7), python (<< 2.8), libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0)
 Section: python
 Priority: optional
 Homepage: http://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
 Description: high-throughput genome sequencing read analysis utilities
  HTSeq can be used to performing a number of common analysis tasks
  when working with high-throughput genome sequencing reads:
  .
    * Getting statistical summaries about the base-call quality scores to
      study the data quality.
    * Calculating a coverage vector and exporting it for visualization in
      a genome browser.
    * Reading in annotation data from a GFF file.
    * Assigning aligned reads from an RNA-Seq experiments to exons and
      genes.

drwxr-xr-x root/root         0 2013-09-18 10:07 ./
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/lib/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/scripts/
-rw-r--r-- root/root    358540 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/_HTSeq.so
-rw-r--r-- root/root     86888 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/_StepVector.so
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/lib/pyshared/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/lib/pyshared/python2.7/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/lib/pyshared/python2.7/HTSeq/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/bin/
-rwxr-xr-x root/root        75 2013-09-18 10:07 ./usr/bin/htseq-count
-rwxr-xr-x root/root        69 2013-09-18 10:07 ./usr/bin/htseq-qa
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/share/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/share/doc/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/share/doc/python-htseq/
-rw-r--r-- root/root      1227 2013-09-05 19:18 ./usr/share/doc/python-htseq/copyright
-rw-r--r-- root/root       322 2013-09-05 19:18 ./usr/share/doc/python-htseq/changelog.Debian.gz
-rw-r--r-- root/root      3927 2013-04-29 14:46 ./usr/share/doc/python-htseq/changelog.gz
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/share/man/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/share/man/man1/
-rw-r--r-- root/root      2755 2013-09-18 10:07 ./usr/share/man/man1/htseq-count.1.gz
-rw-r--r-- root/root      1995 2013-09-18 10:07 ./usr/share/man/man1/htseq-qa.1.gz
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/share/pyshared/
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/share/pyshared/HTSeq/
-rw-r--r-- root/root     32996 2013-04-18 14:16 ./usr/share/pyshared/HTSeq/__init__.py
-rw-r--r-- root/root      1407 2013-02-20 14:19 ./usr/share/pyshared/HTSeq/_HTSeq_internal.py
-rw-r--r-- root/root     25079 2013-09-18 10:05 ./usr/share/pyshared/HTSeq/StepVector.py
-rw-r--r-- root/root        24 2013-04-29 14:47 ./usr/share/pyshared/HTSeq/_version.py
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/share/pyshared/HTSeq/scripts/
-rw-r--r-- root/root         0 2013-02-18 14:04 ./usr/share/pyshared/HTSeq/scripts/__init__.py
-rw-r--r-- root/root      7729 2013-02-20 14:17 ./usr/share/pyshared/HTSeq/scripts/qa.py
-rw-r--r-- root/root     11657 2013-04-29 14:50 ./usr/share/pyshared/HTSeq/scripts/count.py
drwxr-xr-x root/root         0 2013-09-18 10:07 ./usr/share/pyshared/HTSeq-0.5.4p3.egg-info/
-rw-r--r-- root/root       710 2013-09-18 10:07 ./usr/share/pyshared/HTSeq-0.5.4p3.egg-info/PKG-INFO
-rw-r--r-- root/root         6 2013-09-18 10:07 ./usr/share/pyshared/HTSeq-0.5.4p3.egg-info/top_level.txt
-rw-r--r-- root/root         1 2013-09-18 10:07 ./usr/share/pyshared/HTSeq-0.5.4p3.egg-info/dependency_links.txt
-rw-r--r-- root/root       403 2013-09-18 10:07 ./usr/share/pyshared/HTSeq-0.5.4p3.egg-info/SOURCES.txt
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/scripts/count.py -> ../../../../../share/pyshared/HTSeq/scripts/count.py
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/scripts/qa.py -> ../../../../../share/pyshared/HTSeq/scripts/qa.py
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/scripts/__init__.py -> ../../../../../share/pyshared/HTSeq/scripts/__init__.py
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/_version.py -> ../../../../share/pyshared/HTSeq/_version.py
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/StepVector.py -> ../../../../share/pyshared/HTSeq/StepVector.py
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/_HTSeq_internal.py -> ../../../../share/pyshared/HTSeq/_HTSeq_internal.py
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq/__init__.py -> ../../../../share/pyshared/HTSeq/__init__.py
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info/SOURCES.txt -> ../../../../share/pyshared/HTSeq-0.5.4p3.egg-info/SOURCES.txt
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info/dependency_links.txt -> ../../../../share/pyshared/HTSeq-0.5.4p3.egg-info/dependency_links.txt
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info/top_level.txt -> ../../../../share/pyshared/HTSeq-0.5.4p3.egg-info/top_level.txt
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/python2.7/dist-packages/HTSeq-0.5.4p3.egg-info/PKG-INFO -> ../../../../share/pyshared/HTSeq-0.5.4p3.egg-info/PKG-INFO
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/pyshared/python2.7/HTSeq/_StepVector.so -> ../../../python2.7/dist-packages/HTSeq/_StepVector.so
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/lib/pyshared/python2.7/HTSeq/_HTSeq.so -> ../../../python2.7/dist-packages/HTSeq/_HTSeq.so
lrwxrwxrwx root/root         0 2013-09-18 10:07 ./usr/share/doc/python-htseq/history.rst.gz -> changelog.gz


┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 10928
Build-Time: 157
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 590
Job: htseq_0.5.4p3-2
Machine Architecture: armhf
Package: htseq
Package-Time: 851
Source-Version: 0.5.4p3-2
Space: 10928
Status: successful
Version: 0.5.4p3-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20130918-1007
Build needed 00:14:11, 10928k disc space