htseq →
0.13.5-1 →
armhf → 2021-01-23 11:07:11
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| htseq 0.13.5-1 (armhf) Sat, 23 Jan 2021 10:57:01 +0000 |
+==============================================================================+
Package: htseq
Version: 0.13.5-1
Source Version: 0.13.5-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-52140bad-9e16-49f5-bece-1e4208caaf2f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.1 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.1 MB]
Fetched 25.2 MB in 10s (2437 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'htseq' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/htseq.git
Please use:
git clone https://salsa.debian.org/med-team/htseq.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 331 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main htseq 0.13.5-1 (dsc) [2155 B]
Get:2 http://172.17.0.1/private bullseye-staging/main htseq 0.13.5-1 (tar) [318 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main htseq 0.13.5-1 (diff) [11.1 kB]
Fetched 331 kB in 0s (1600 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/htseq-cbjDqY/htseq-0.13.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/htseq-cbjDqY' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-WMPx2t/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-WMPx2t/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-WMPx2t/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (3586 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 75 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (45.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12379 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: 2to3, debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
Filtered Build-Depends: 2to3, debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
dpkg-deb: building package 'sbuild-build-depends-htseq-dummy' in '/<<BUILDDIR>>/resolver-WMPx2t/apt_archive/sbuild-build-depends-htseq-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-htseq-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ Sources [552 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ Packages [634 B]
Fetched 2519 B in 1s (3823 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install htseq build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
2to3 autoconf automake autopoint autotools-dev cpp-10 cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx g++-10
gcc-10 gcc-10-base gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libasan6 libatomic1 libblas3 libbrotli1 libbsd0 libcc1-0
libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgcc-10-dev
libgcc-s1 libgfortran5 libgnutls30 libgomp1 libgssapi-krb5-2 libhts3
libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack3 liblcms2-2 libmagic-mgc libmagic1 libnghttp2-14 libnsl2
libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1 libssl1.1
libstdc++-10-dev libstdc++6 libsub-override-perl libtiff5 libtirpc-common
libtirpc3 libtool libubsan1 libuchardet0 libwebp6 libwebpdemux2 libwebpmux3
libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support
po-debconf python-matplotlib-data python3 python3-all python3-all-dev
python3-chardet python3-cycler python3-dateutil python3-debian python3-dev
python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-numpy python3-pil python3-pkg-resources
python3-pyparsing python3-pysam python3-setuptools python3-six python3.9
python3.9-dev python3.9-minimal swig swig4.0 ttf-bitstream-vera zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-10-locales cython-doc
dh-make gcc-10-doc gettext-doc libasprintf-dev libgettextpo-dev groff
gnutls-bin krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils
libstdc++-10-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-cycler-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0
inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi
python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5
python3-scipy python3-sip python3-tornado texlive-extra-utils
texlive-latex-extra ttf-staypuft gfortran python-numpy-doc python3-pytest
python3-numpy-dbg python-pil-doc python3-pil-dbg python-pyparsing-doc
python-setuptools-doc python3.9-venv python3.9-doc binfmt-support swig-doc
swig-examples swig4.0-examples swig4.0-doc
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl javascript-common
krb5-locales publicsuffix libltdl-dev libmail-sendmail-perl python3-apt
python3-tk python3-olefile
The following NEW packages will be installed:
2to3 autoconf automake autopoint autotools-dev cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
libbrotli1 libbsd0 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6
libgfortran5 libgssapi-krb5-2 libhts3 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libmagic-mgc libmagic1
libnghttp2-14 libnsl2 libpipeline1 libpng16-16 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev
libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
libssl1.1 libsub-override-perl libtiff5 libtirpc-common libtirpc3 libtool
libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6
libxml2 m4 mailcap man-db media-types mime-support po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-chardet
python3-cycler python3-dateutil python3-debian python3-dev python3-distutils
python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
python3-numpy python3-pil python3-pkg-resources python3-pyparsing
python3-pysam python3-setuptools python3-six python3.9 python3.9-dev
python3.9-minimal sbuild-build-depends-htseq-dummy swig swig4.0
ttf-bitstream-vera zlib1g-dev
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libatomic1 libcc1-0 libgcc-10-dev
libgcc-s1 libgnutls30 libgomp1 libstdc++-10-dev libstdc++6 libubsan1
14 upgraded, 110 newly installed, 0 to remove and 61 not upgraded.
Need to get 88.1 MB of archives.
After this operation, 151 MB disk space will be freed.
Get:1 copy:/<<BUILDDIR>>/resolver-WMPx2t/apt_archive ./ sbuild-build-depends-htseq-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.2.1-6+rpi1 [746 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.2.1-6+rpi1 [202 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.2.1-6+rpi1 [36.1 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.2.1-6+rpi1 [84.1 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.2.1-6+rpi1 [8212 B]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libasan6 armhf 10.2.1-6+rpi1 [1986 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf cpp-10 armhf 10.2.1-6+rpi1 [6688 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.2.1-6+rpi1 [38.3 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf g++-10 armhf 10.2.1-6+rpi1 [7341 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf gcc-10 armhf 10.2.1-6+rpi1 [13.4 MB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libgcc-10-dev armhf 10.2.1-6+rpi1 [682 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-10-dev armhf 10.2.1-6+rpi1 [1751 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.2.1-6+rpi1 [408 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1i-2 [1272 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.1-2+rpi1 [790 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.1-2+rpi1 [1623 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.9.1-1 [37.8 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf mailcap all 3.68 [31.6 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.18.3-4 [62.3 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.18.3-4 [108 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.18.3-4 [315 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.18.3-4 [142 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libtirpc-common all 1.3.1-1 [13.4 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libtirpc3 armhf 1.3.1-1 [71.2 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libnsl2 armhf 1.3.0-2 [33.2 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.1-2+rpi1 [1658 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.1-2+rpi1 [464 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.9.1-1 [21.0 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.9.1-1 [64.1 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libgnutls30 armhf 3.7.0-5 [1275 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-3 [170 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.9.1-2 [77.2 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf 2to3 all 3.9.1-1 [21.9 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-3 [32.4 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-3 [509 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.21-3+b1 [1234 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.1 [188 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.10.0-1 [25.6 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.10.0-1 [15.3 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-3 [162 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20201015-2 [162 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-3 [1214 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.1 [1010 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.9.1-2 [143 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.9.0-2 [141 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.74.0-1 [301 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.7-1 [44.0 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.10-1 [121 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.1-6+rpi1 [232 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.11-2 [318 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-2 [120 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9 armhf 3.9.1-2+rpi1 [1413 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-dev armhf 3.9.1-2+rpi1 [3042 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.9.1-1 [21.2 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.9.1-1 [1068 B]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2.1 [136 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8.1 [223 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.3.3-1 [4153 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.9.1-1 [1056 B]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python3.9-dev armhf 3.9.1-2+rpi1 [501 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.9.1-1 [1168 B]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.9.1-1 [1064 B]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 51.1.0-1 [203 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 4.0.0-1 [99.0 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.15.0-2 [16.9 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.8.1-5 [81.7 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-debian all 0.1.39 [80.1 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.3.1-1 [272 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.19.4-1+b2 [2930 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 8.1.0-1 [407 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.3.3-1 [4109 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-pysam armhf 0.15.4+ds-3+b1 [1344 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 51.1.0-1 [1099 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf swig4.0 armhf 4.0.2-1 [1221 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf swig all 4.0.2-1 [330 kB]
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Setting up media-types (4.0.0) ...
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Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libasan6:armhf (10.2.1-6+rpi1) ...
Setting up libkrb5support0:armhf (1.18.3-4) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
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Setting up libimagequant0:armhf (2.12.2-1.1) ...
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Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
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Setting up libssh2-1:armhf (1.9.0-2) ...
Setting up libkrb5-3:armhf (1.18.3-4) ...
Setting up libtiff5:armhf (4.2.0-1) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Setting up swig4.0 (4.0.2-1) ...
Setting up python-matplotlib-data (3.3.3-1) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libgcc-10-dev:armhf (10.2.1-6+rpi1) ...
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Setting up libjs-jquery-ui (1.12.1+dfsg-8) ...
Setting up libfreetype6:armhf (2.10.4+dfsg-1) ...
Setting up libgssapi-krb5-2:armhf (1.18.3-4) ...
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Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.10.0-1) ...
Setting up dwz (0.13+20201015-2) ...
Setting up groff-base (1.22.4-5) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libtirpc3:armhf (1.3.1-1) ...
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Setting up g++-10 (10.2.1-6+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
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Setting up libpython3.9-stdlib:armhf (3.9.1-2+rpi1) ...
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Setting up libhts3:armhf (1.11-2) ...
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Setting up python3 (3.9.1-1) ...
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Setting up python3-pil:armhf (8.1.0-1) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up python3-cycler (0.10.0-3) ...
Setting up python3-kiwisolver (1.3.1-1) ...
Setting up cython3 (0.29.21-3+b1) ...
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Setting up python3-dateutil (2.8.1-5) ...
Setting up python3-lib2to3 (3.9.1-2) ...
Setting up python3-pkg-resources (51.1.0-1) ...
Setting up python3-distutils (3.9.1-2) ...
Setting up dh-python (4.20201102) ...
Setting up python3-pysam (0.15.4+ds-3+b1) ...
Setting up libpython3-dev:armhf (3.9.1-1) ...
Setting up python3-setuptools (51.1.0-1) ...
Setting up python3-all (3.9.1-1) ...
Setting up 2to3 (3.9.1-1) ...
Setting up python3-chardet (4.0.0-1) ...
Setting up libpython3-all-dev:armhf (3.9.1-1) ...
Setting up python3-debian (0.1.39) ...
Setting up python3-dev (3.9.1-1) ...
Setting up python3-numpy (1:1.19.4-1+b2) ...
Setting up python3-all-dev (3.9.1-1) ...
Setting up python3-matplotlib (3.3.3-1) ...
Setting up debhelper (13.3.1) ...
Setting up sbuild-build-depends-htseq-dummy (0.invalid.0) ...
Setting up dh-autoreconf (19) ...
Processing triggers for libc-bin (2.31-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-5+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1
Package versions: 2to3_3.9.1-1 adduser_3.118 apt_2.1.12 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1-1 binutils_2.35.1-5+rpi1 binutils-arm-linux-gnueabihf_2.35.1-5+rpi1 binutils-common_2.35.1-5+rpi1 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.1-6+rpi1 cython3_0.29.21-3+b1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.10.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-2 file_1:5.39-3 findutils_4.7.0+git20201010-2 fonts-lyx_2.3.6-1 g++_4:10.2.0-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gettext_0.21-3 gettext-base_0.21-3 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-8 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1+b1 libbinutils_2.35.1-5+rpi1 libblas3_3.9.0-3 libblkid1_2.36.1-2 libbrotli1_1.0.9-2+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-5+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.45.6-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-5+rpi1 libctf0_2.35.1-5+rpi1 libcurl3-gnutls_7.74.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255+b1 libdebhelper-perl_13.3.1 libdeflate0_1.7-1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-3 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-2 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.10.0-1 libfreetype6_2.10.4+dfsg-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.1-6+rpi1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.0-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed6_3.6-2 libhts3_1.11-2 libicu67_67.1-6 libidn2-0_2.3.0-4 libimagequant0_2.12.2-1.1 libisl23_0.23-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.5-2 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui_1.12.1+dfsg-8 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-2 liblapack3_3.9.0-3 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 libldap-common_2.4.56+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libnsl2_1.3.0-2 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.1 libpython3-all-dev_3.9.1-1 libpython3-dev_3.9.1-1 libpython3-stdlib_3.9.1-1 libpython3.9_3.9.1-2+rpi1 libpython3.9-dev_3.9.1-2+rpi1 libpython3.9-minimal_3.9.1-2+rpi1 libpython3.9-stdlib_3.9.1-2+rpi1 libreadline8_8.1-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-3 libsmartcols1_2.36.1-2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1 libssh2-1_1.9.0-2 libssl1.1_1.1.1i-2 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-4+rpi1 libtasn1-6_4.16.0-2 libtiff5_4.2.0-1 libtinfo6_6.2+20201114-1 libtirpc-common_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-4+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2.1 libxdmcp6_1:1.1.2-3 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 mailcap_3.68 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mount_2.36.1-2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.3.3-1 python3_3.9.1-1 python3-all_3.9.1-1 python3-all-dev_3.9.1-1 python3-chardet_4.0.0-1 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-5 python3-debian_0.1.39 python3-dev_3.9.1-1 python3-distutils_3.9.1-2 python3-kiwisolver_1.3.1-1 python3-lib2to3_3.9.1-2 python3-matplotlib_3.3.3-1 python3-minimal_3.9.1-1 python3-numpy_1:1.19.4-1+b2 python3-pil_8.1.0-1 python3-pkg-resources_51.1.0-1 python3-pyparsing_2.4.7-1 python3-pysam_0.15.4+ds-3+b1 python3-setuptools_51.1.0-1 python3-six_1.15.0-2 python3.9_3.9.1-2+rpi1 python3.9-dev_3.9.1-2+rpi1 python3.9-minimal_3.9.1-2+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htseq-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swig_4.0.2-1 swig4.0_4.0.2-1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 ttf-bitstream-vera_1.10-8.1 tzdata_2020d-1 util-linux_2.36.1-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.fFXm2WLI/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan 18 10:26:14 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./htseq_0.13.5-1.dsc
dpkg-source: info: extracting htseq in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking htseq_0.13.5.orig.tar.gz
dpkg-source: info: unpacking htseq_0.13.5-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-52140bad-9e16-49f5-bece-1e4208caaf2f
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package htseq
dpkg-buildpackage: info: source version 0.13.5-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:232: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
# setup.py creates some symlinks in clean target
# remove these links to keep source tree clean
for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \
if [ -L ${link} ] ; then rm ${link} ; fi \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.21
SWIGging
correcting SWIG for python3
RefactoringTool: Skipping optional fixer: buffer
RefactoringTool: Skipping optional fixer: idioms
RefactoringTool: Skipping optional fixer: set_literal
RefactoringTool: Skipping optional fixer: ws_comma
RefactoringTool: Refactored src/StepVector.py
RefactoringTool: Files that were modified:
RefactoringTool: src/StepVector.py
moving swigged .py module
done
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts
copying HTSeq/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/features.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
running build_ext
building 'HTSeq._HTSeq' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/src
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/_HTSeq.c -o build/temp.linux-armhf-3.9/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.9/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.9
copying and adjusting scripts/htseq-qa -> build/scripts-3.9
copying and adjusting scripts/htseq-count -> build/scripts-3.9
copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.9
changing mode of build/scripts-3.9/htseq-qa from 644 to 755
changing mode of build/scripts-3.9/htseq-count from 644 to 755
changing mode of build/scripts-3.9/htseq-count-barcodes from 644 to 755
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build; python3.9 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-htseq
running install
running build
running build_py
running preprocess
cythonizing
Cython version 0.29.21
SWIGging
correcting SWIG for python3
RefactoringTool: Skipping optional fixer: buffer
RefactoringTool: Skipping optional fixer: idioms
RefactoringTool: Skipping optional fixer: set_literal
RefactoringTool: Skipping optional fixer: ws_comma
RefactoringTool: Refactored src/StepVector.py
RefactoringTool: Files that were modified:
RefactoringTool: src/StepVector.py
moving swigged .py module
done
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq
running build_ext
building 'HTSeq._HTSeq' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/_HTSeq.c -o build/temp.linux-armhf-3.9/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.9/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/features.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/StepVector.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/utils.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/_version.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/__pycache__/features.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_htseq/build/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/qa.py to qa.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count.py to count.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/utils.py to utils.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/features.py to features.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/StepVector.py to StepVector.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq/_version.py to _version.cpython-39.pyc
running install_egg_info
running egg_info
writing HTSeq.egg-info/PKG-INFO
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing requirements to HTSeq.egg-info/requires.txt
writing top-level names to HTSeq.egg-info/top_level.txt
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'todo.txt'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.9/dist-packages/HTSeq-0.13.5.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.9/htseq-qa -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.9/htseq-count -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.9/htseq-count-barcodes -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-qa to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -a -O--buildsystem=pybuild
dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 618122 new size 621137
dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 388190 new size 389677
dh_strip -a -a -O--buildsystem=pybuild
dh_makeshlibs -a -a -O--buildsystem=pybuild
dh_shlibdeps -a -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-htseq' in '../python3-htseq_0.13.5-1_armhf.deb'.
dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_0.13.5-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../htseq_0.13.5-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-01-23T11:07:04Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
htseq_0.13.5-1_armhf.changes:
-----------------------------
Format: 1.8
Date: Mon, 18 Jan 2021 11:21:51 +0100
Source: htseq
Binary: python3-htseq python3-htseq-dbgsym
Architecture: armhf
Version: 0.13.5-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-htseq - Python3 high-throughput genome sequencing read analysis utilities
Changes:
htseq (0.13.5-1) unstable; urgency=medium
.
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.5.1 (routine-update)
.
[ Juhani Numminen ]
* Remove generated file src/Stepvector.py with debian/clean
* Add Build-Depends 2to3 needed by setup.py
* export CYTHON=cython3 so that setup.py can find the cython3 executable
* Use autopkgtest-pkg-python to execute the same test that manually-written
debian/tests/control did
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Checksums-Sha256:
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Files:
f80ff6b38875b8da0199a314bfc4f653 7339 python optional htseq_0.13.5-1_armhf.buildinfo
939e4aeaf43a7bbfb66dd4d9eae3503c 1041680 debug optional python3-htseq-dbgsym_0.13.5-1_armhf.deb
2070866b6024153a6954d9d79935f860 197060 python optional python3-htseq_0.13.5-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-htseq-dbgsym_0.13.5-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 1041680 bytes: control archive=652 bytes.
430 bytes, 12 lines control
305 bytes, 3 lines md5sums
Package: python3-htseq-dbgsym
Source: htseq
Version: 0.13.5-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1126
Depends: python3-htseq (= 0.13.5-1)
Section: debug
Priority: optional
Description: debug symbols for python3-htseq
Build-Ids: 803c71aff5f3330d41a7cc9071587fa3dc00eac2 d66c9262e84e3d3f81b536372370378f5f0803ca
drwxr-xr-x root/root 0 2021-01-18 10:21 ./
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/debug/.build-id/80/
-rw-r--r-- root/root 248308 2021-01-18 10:21 ./usr/lib/debug/.build-id/80/3c71aff5f3330d41a7cc9071587fa3dc00eac2.debug
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/debug/.build-id/d6/
-rw-r--r-- root/root 886428 2021-01-18 10:21 ./usr/lib/debug/.build-id/d6/6c9262e84e3d3f81b536372370378f5f0803ca.debug
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 3244 2021-01-18 10:21 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-htseq.debug
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/share/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-01-18 10:21 ./usr/share/doc/python3-htseq-dbgsym -> python3-htseq
python3-htseq_0.13.5-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 197060 bytes: control archive=1924 bytes.
1072 bytes, 25 lines control
1947 bytes, 23 lines md5sums
251 bytes, 12 lines * postinst #!/bin/sh
400 bytes, 12 lines * prerm #!/bin/sh
Package: python3-htseq
Source: htseq
Version: 0.13.5-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 703
Depends: python3 (<< 3.10), python3 (>= 3.9~), python3-numpy, python3-pysam, python3:any, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5)
Breaks: python-htseq (<= 0.9.1)
Provides: python-htseq
Section: python
Priority: optional
Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
Description: Python3 high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks
when working with high-throughput genome sequencing reads:
.
* Getting statistical summaries about the base-call quality scores to
study the data quality.
* Calculating a coverage vector and exporting it for visualization in
a genome browser.
* Reading in annotation data from a GFF file.
* Assigning aligned reads from an RNA-Seq experiments to exons and
genes.
.
This package contains the Python 3 module.
drwxr-xr-x root/root 0 2021-01-18 10:21 ./
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/bin/
-rwxr-xr-x root/root 75 2021-01-18 10:21 ./usr/bin/htseq-count
-rwxr-xr-x root/root 103 2021-01-18 10:21 ./usr/bin/htseq-count-barcodes
-rwxr-xr-x root/root 69 2021-01-18 10:21 ./usr/bin/htseq-qa
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/python3/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq-0.13.5.egg-info/
-rw-r--r-- root/root 3196 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq-0.13.5.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq-0.13.5.egg-info/dependency_links.txt
-rw-r--r-- root/root 28 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq-0.13.5.egg-info/requires.txt
-rw-r--r-- root/root 6 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq-0.13.5.egg-info/top_level.txt
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq/
-rw-r--r-- root/root 21410 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq/StepVector.py
-rw-r--r-- root/root 440600 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 1504 2020-12-29 02:41 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq_internal.py
-rw-r--r-- root/root 94660 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 38973 2020-12-29 02:41 ./usr/lib/python3/dist-packages/HTSeq/__init__.py
-rw-r--r-- root/root 22 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq/_version.py
-rw-r--r-- root/root 13551 2020-12-29 02:41 ./usr/lib/python3/dist-packages/HTSeq/features.py
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/lib/python3/dist-packages/HTSeq/scripts/
-rw-r--r-- root/root 0 2020-12-29 02:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/__init__.py
-rw-r--r-- root/root 25933 2020-12-29 02:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/count.py
-rw-r--r-- root/root 24277 2020-12-29 02:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/count_with_barcodes.py
-rw-r--r-- root/root 10427 2020-12-29 02:41 ./usr/lib/python3/dist-packages/HTSeq/scripts/qa.py
-rw-r--r-- root/root 2621 2020-12-29 02:41 ./usr/lib/python3/dist-packages/HTSeq/utils.py
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/share/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/share/doc/python3-htseq/
-rw-r--r-- root/root 1717 2021-01-18 10:21 ./usr/share/doc/python3-htseq/changelog.Debian.gz
-rw-r--r-- root/root 959 2021-01-18 10:21 ./usr/share/doc/python3-htseq/copyright
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/share/man/
drwxr-xr-x root/root 0 2021-01-18 10:21 ./usr/share/man/man1/
-rw-r--r-- root/root 5662 2021-01-18 10:21 ./usr/share/man/man1/htseq-count.1.gz
-rw-r--r-- root/root 1994 2021-01-18 10:21 ./usr/share/man/man1/htseq-qa.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 15692
Build-Time: 190
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 393
Job: htseq_0.13.5-1
Machine Architecture: armhf
Package: htseq
Package-Time: 603
Source-Version: 0.13.5-1
Space: 15692
Status: successful
Version: 0.13.5-1
--------------------------------------------------------------------------------
Finished at 2021-01-23T11:07:04Z
Build needed 00:10:03, 15692k disk space