htseq →
0.12.4-1 →
armhf → 2020-10-20 05:42:54
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| htseq 0.12.4-1 (armhf) Tue, 20 Oct 2020 05:23:28 +0000 |
+==============================================================================+
Package: htseq
Version: 0.12.4-1
Source Version: 0.12.4-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-e6bd25cc-6545-4774-9268-30ead608dd4a' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.4 MB in 27s (895 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'htseq' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/htseq.git
Please use:
git clone https://salsa.debian.org/med-team/htseq.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 639 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main htseq 0.12.4-1 (dsc) [2170 B]
Get:2 http://172.17.0.1/private bullseye-staging/main htseq 0.12.4-1 (tar) [626 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main htseq 0.12.4-1 (diff) [11.0 kB]
Fetched 639 kB in 0s (1358 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/htseq-QVy3gZ/htseq-0.12.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/htseq-QVy3gZ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-jzct9A/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-jzct9A/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-jzct9A/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2847 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 45 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12495 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
dpkg-deb: building package 'sbuild-build-depends-htseq-dummy' in '/<<BUILDDIR>>/resolver-jzct9A/apt_archive/sbuild-build-depends-htseq-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-htseq-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ Sources [546 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ Packages [630 B]
Fetched 2509 B in 1s (3365 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install htseq build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils
binutils-arm-linux-gnueabihf binutils-common ca-certificates cpp-10 cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx
g++-10 gcc-10 gcc-10-base gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libasan6 libatomic1 libbinutils libblas3 libbrotli1
libbsd0 libcc1-0 libcroco3 libctf0 libcurl3-gnutls libdebhelper-perl
libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libgcc-10-dev libgcc-s1 libgfortran5 libglib2.0-0 libgomp1
libgssapi-krb5-2 libhts3 libicu67 libimagequant0 libjbig0 libjpeg62-turbo
libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack3 liblcms2-2 libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal
libpython3.8-stdlib librtmp1 libsigsegv2 libssh2-1 libssl1.1
libstdc++-10-dev libstdc++6 libsub-override-perl libtiff5 libtool libubsan1
libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6
libxml2 m4 man-db mime-support node-jquery openssl po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-certifi
python3-chardet python3-cycler python3-dateutil python3-debian python3-dev
python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-numpy python3-pil python3-pkg-resources
python3-pyparsing python3-pysam python3-setuptools python3-six python3.8
python3.8-dev python3.8-minimal swig swig4.0 ttf-bitstream-vera zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales
cython-doc dh-make gcc-10-doc gettext-doc libasprintf-dev libgettextpo-dev
groff krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils
libstdc++-10-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-cycler-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0
inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi
python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5
python3-scipy python3-sip python3-tornado texlive-extra-utils
texlive-latex-extra ttf-staypuft gfortran python-numpy-doc python3-pytest
python3-numpy-dbg python-pil-doc python3-pil-dbg python-pyparsing-doc
python-setuptools-doc python3.8-venv python3.8-doc binfmt-support swig-doc
swig-examples swig4.0-examples swig4.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common krb5-locales publicsuffix libltdl-dev
libmail-sendmail-perl python3-apt python3-tk python3-olefile
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhts3 libicu67
libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2
libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librtmp1
libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtiff5 libtool
libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6
libxml2 m4 man-db mime-support node-jquery openssl po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-certifi
python3-chardet python3-cycler python3-dateutil python3-debian python3-dev
python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-numpy python3-pil python3-pkg-resources
python3-pyparsing python3-pysam python3-setuptools python3-six python3.8
python3.8-dev python3.8-minimal sbuild-build-depends-htseq-dummy swig
swig4.0 ttf-bitstream-vera zlib1g-dev
The following packages will be upgraded:
binutils binutils-arm-linux-gnueabihf binutils-common cpp-10 g++-10 gcc-10
gcc-10-base libasan6 libatomic1 libbinutils libcc1-0 libctf0 libgcc-10-dev
libgcc-s1 libgomp1 libstdc++-10-dev libstdc++6 libubsan1
18 upgraded, 110 newly installed, 0 to remove and 27 not upgraded.
Need to get 86.7 MB/88.0 MB of archives.
After this operation, 196 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jzct9A/apt_archive ./ sbuild-build-depends-htseq-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.2.0-13+rpi1 [31.7 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libctf0 armhf 2.35.1-1+rpi1 [35.3 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf binutils-arm-linux-gnueabihf armhf 2.35.1-1+rpi1 [1707 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libbinutils armhf 2.35.1-1+rpi1 [314 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf binutils-common armhf 2.35.1-1+rpi1 [2214 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf binutils armhf 2.35.1-1+rpi1 [60.1 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.2.0-13+rpi1 [199 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.2.0-13+rpi1 [36.1 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.2.0-13+rpi1 [84.1 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.2.0-13+rpi1 [8180 B]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libasan6 armhf 10.2.0-13+rpi1 [301 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.2.0-13+rpi1 [115 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf g++-10 armhf 10.2.0-13+rpi1 [6792 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-10-dev armhf 10.2.0-13+rpi1 [1746 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libgcc-10-dev armhf 10.2.0-13+rpi1 [685 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf gcc-10 armhf 10.2.0-13+rpi1 [12.3 MB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf cpp-10 armhf 10.2.0-13+rpi1 [6249 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.2.0-13+rpi1 [409 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.6-1 [752 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.6-1 [1552 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.6-1 [1654 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.6-1 [422 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1g-1 [811 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.21-2 [1259 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.181-1 [161 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.1-1 [1174 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.1 [578 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.6-1 [78.4 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.6-1 [145 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200925 [98.3 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.5.2-1 [200 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-10+b3 [62.0 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-10+b3 [112 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-10+b3 [318 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-10+b3 [135 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-3 [63.0 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.72.0-1 [297 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.6-1 [47.4 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.10-1 [121 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-3 [347 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-13+rpi1 [231 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.11-2 [318 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf node-jquery all 3.5.1+dfsg-4 [309 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg-4 [3612 B]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-7 [232 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.6-1 [1343 kB]
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Get:97 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.8.2-3 [1068 B]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.3.2-1 [4153 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-3 [1056 B]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.6-1 [519 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-3 [1164 B]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.8.2-3 [1064 B]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 50.3.0-1 [187 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-7 [81.1 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.15.0-1 [16.8 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.8.1-4 [81.6 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-debian all 0.1.38 [77.6 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.2.0-1 [45.5 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.19.2-2 [2960 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 7.2.0-1 [401 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.3.2-1 [4105 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-pysam armhf 0.15.4+ds-3 [1589 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 50.3.0-1 [511 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf swig4.0 armhf 4.0.1-5 [1236 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf swig all 4.0.1-5 [329 kB]
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Setting up libmagic1:armhf (1:5.38-5) ...
Setting up libdeflate0:armhf (1.6-1) ...
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Setting up libasan6:armhf (10.2.0-13+rpi1) ...
Setting up libkrb5support0:armhf (1.17-10+b3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.2.10-1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.5-1.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libatomic1:armhf (10.2.0-13+rpi1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up libk5crypto3:armhf (1.17-10+b3) ...
Setting up libgfortran5:armhf (10.2.0-13+rpi1) ...
Setting up libubsan1:armhf (10.2.0-13+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
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Setting up swig4.0 (4.0.1-5) ...
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Setting up openssl (1.1.1g-1) ...
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Setting up libxml2:armhf (2.9.10+dfsg-6.1) ...
Setting up libcc1-0:armhf (10.2.0-13+rpi1) ...
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Setting up libctf0:armhf (2.35.1-1+rpi1) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-2) ...
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Setting up libgcc-10-dev:armhf (10.2.0-13+rpi1) ...
Setting up m4 (1.4.18-4) ...
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Setting up python3-six (1.15.0-1) ...
Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up python3-pyparsing (2.4.7-1) ...
Setting up libfreetype6:armhf (2.10.2+dfsg-3) ...
Setting up python3-certifi (2020.6.20-1) ...
Setting up libpython3.8:armhf (3.8.6-1) ...
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Setting up libgssapi-krb5-2:armhf (1.17-10+b3) ...
Setting up cython3 (0.29.21-2) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up python3-dateutil (2.8.1-4) ...
Setting up libjs-jquery (3.5.1+dfsg-4) ...
Setting up python3-lib2to3 (3.8.6-1) ...
Setting up binutils-arm-linux-gnueabihf (2.35.1-1+rpi1) ...
Setting up python3-pkg-resources (50.3.0-1) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.6-1) ...
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Setting up gettext (0.19.8.1-10) ...
Setting up libstdc++-10-dev:armhf (10.2.0-13+rpi1) ...
Setting up python3-setuptools (50.3.0-1) ...
Setting up python3-all (3.8.2-3) ...
Setting up libcurl3-gnutls:armhf (7.72.0-1) ...
Setting up binutils (2.35.1-1+rpi1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-pil:armhf (7.2.0-1) ...
Setting up python3-chardet (3.0.4-7) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-7) ...
Setting up libpython3.8-dev:armhf (3.8.6-1) ...
Setting up python3-debian (0.1.38) ...
Setting up python3-numpy (1:1.19.2-2) ...
Setting up gcc-10 (10.2.0-13+rpi1) ...
Setting up python3.8-dev (3.8.6-1) ...
Setting up python3-matplotlib (3.3.2-1) ...
Setting up libhts3:armhf (1.11-2) ...
Setting up python3-pysam (0.15.4+ds-3) ...
Setting up libpython3-dev:armhf (3.8.2-3) ...
Setting up g++-10 (10.2.0-13+rpi1) ...
Setting up po-debconf (1.0.21) ...
Setting up libpython3-all-dev:armhf (3.8.2-3) ...
Setting up python3-dev (3.8.2-3) ...
Setting up python3-all-dev (3.8.2-3) ...
Setting up debhelper (13.2.1) ...
Setting up sbuild-build-depends-htseq-dummy (0.invalid.0) ...
Setting up dh-autoreconf (19) ...
Processing triggers for libc-bin (2.31-3+rpi1) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-1+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-13+rpi1 gcc-10_10.2.0-13+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-13+rpi1 libstdc++6_10.2.0-13+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35.1-1+rpi1 binutils-arm-linux-gnueabihf_2.35.1-1+rpi1 binutils-common_2.35.1-1+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.2.0-13+rpi1 cython3_0.29.21-2 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200925 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 file_1:5.38-5 findutils_4.7.0-1 fonts-lyx_2.3.5.2-1 g++_4:10.1.0-1+rpi1 g++-10_10.2.0-13+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.2.0-13+rpi1 gcc-10-base_10.2.0-13+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1+b1 gcc-8-base_8.4.0-4+rpi1+b1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan6_10.2.0-13+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-13+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.35.1-1+rpi1 libblas3_3.9.0-3 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-6+b1 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-13+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35-2+rpi1 libctf0_2.35.1-1+rpi1 libcurl3-gnutls_7.72.0-1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2.1 libdeflate0_1.6-1 libdpkg-perl_1.20.5+rpi1 libelf1_0.181-1 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libfreetype6_2.10.2+dfsg-3 libgcc-10-dev_10.2.0-13+rpi1 libgcc-s1_10.2.0-13+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-13+rpi1 libglib2.0-0_2.66.1-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-13+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libhogweed6_3.6-2 libhts3_1.11-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libimagequant0_2.12.2-1.1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.5-1.1 libjs-jquery_3.5.1+dfsg-4 libjs-jquery-ui_1.12.1+dfsg-7 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblapack3_3.9.0-3 liblcms2-2_2.9-4 libldap-2.4-2_2.4.51+dfsg-1 libldap-common_2.4.51+dfsg-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libncursesw6_6.2-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-2 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.1 libpython3-all-dev_3.8.2-3 libpython3-dev_3.8.2-3 libpython3-stdlib_3.8.2-3 libpython3.8_3.8.6-1 libpython3.8-dev_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libreadline8_8.0-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-13+rpi1 libstdc++6_10.2.0-13+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.2-1+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtiff5_4.1.0+git191117-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.2.0-13+rpi1 libuchardet0_0.0.7-1 libudev1_246.2-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxapian30_1.4.17-1 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxml2_2.9.10+dfsg-6.1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.36-3 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 node-jquery_3.5.1+dfsg-4 openssl_1.1.1g-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python-matplotlib-data_3.3.2-1 python3_3.8.2-3 python3-all_3.8.2-3 python3-all-dev_3.8.2-3 python3-certifi_2020.6.20-1 python3-chardet_3.0.4-7 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-4 python3-debian_0.1.38 python3-dev_3.8.2-3 python3-distutils_3.8.6-1 python3-kiwisolver_1.2.0-1 python3-lib2to3_3.8.6-1 python3-matplotlib_3.3.2-1 python3-minimal_3.8.2-3 python3-numpy_1:1.19.2-2 python3-pil_7.2.0-1 python3-pkg-resources_50.3.0-1 python3-pyparsing_2.4.7-1 python3-pysam_0.15.4+ds-3 python3-setuptools_50.3.0-1 python3-six_1.15.0-1 python3.8_3.8.6-1 python3.8-dev_3.8.6-1 python3.8-minimal_3.8.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htseq-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swig_4.0.1-5 swig4.0_4.0.1-5 sysvinit-utils_2.96-4 tar_1.30+dfsg-7 ttf-bitstream-vera_1.10-8 tzdata_2020a-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.wLbmQ1GR/trustedkeys.kbx': General error
gpgv: Signature made Wed Oct 14 15:03:03 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./htseq_0.12.4-1.dsc
dpkg-source: info: extracting htseq in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking htseq_0.12.4.orig.tar.gz
dpkg-source: info: unpacking htseq_0.12.4-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-e6bd25cc-6545-4774-9268-30ead608dd4a
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package htseq
dpkg-buildpackage: info: source version 0.12.4-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.8 setup.py clean
symlinking folders for python3
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
# setup.py creates some symlinks in clean target
# remove these links to keep source tree clean
for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \
if [ -L ${link} ] ; then rm ${link} ; fi \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config
symlinking folders for python3
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build
symlinking folders for python3
running build
running build_py
running preprocess
cythonizing
/bin/sh: 1: cython: not found
Cython not found, but transpiled file found
SWIGging
correcting SWIG for python3
/bin/sh: 1: 2to3: not found
SWIG not found, but transpiled files found
moving swigged .py module
done
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts
copying HTSeq/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/features.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
running build_ext
building 'HTSeq._HTSeq' extension
creating build
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/src
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/_HTSeq.c -o build/temp.linux-armhf-3.8/src/_HTSeq.o -w
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/src/_HTSeq.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_HTSeq.cpython-38-arm-linux-gnueabihf.so
building 'HTSeq._StepVector' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c src/StepVector_wrap.cxx -o build/temp.linux-armhf-3.8/src/StepVector_wrap.o -w
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/src/StepVector_wrap.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_StepVector.cpython-38-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.8
copying and adjusting scripts/htseq-qa -> build/scripts-3.8
copying and adjusting scripts/htseq-count -> build/scripts-3.8
copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.8
changing mode of build/scripts-3.8/htseq-qa from 644 to 755
changing mode of build/scripts-3.8/htseq-count from 644 to 755
changing mode of build/scripts-3.8/htseq-count-barcodes from 644 to 755
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build; python3.8 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-htseq
symlinking folders for python3
running install
running build
running build_py
running preprocess
cythonizing
/bin/sh: 1: cython: not found
Cython not found, but transpiled file found
SWIGging
correcting SWIG for python3
/bin/sh: 1: 2to3: not found
SWIG not found, but transpiled files found
moving swigged .py module
done
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/features.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_HTSeq.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_StepVector.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/StepVector.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/utils.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/_version.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/features.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/qa.py to qa.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/count.py to count.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/utils.py to utils.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/features.py to features.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/StepVector.py to StepVector.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/_version.py to _version.cpython-38.pyc
running install_egg_info
running egg_info
writing HTSeq.egg-info/PKG-INFO
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing requirements to HTSeq.egg-info/requires.txt
writing top-level names to HTSeq.egg-info/top_level.txt
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'todo.txt'
no previously-included directories found matching 'example_data'
no previously-included directories found matching 'doc'
no previously-included directories found matching 'test'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq-0.12.4.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.8/htseq-qa -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.8/htseq-count -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.8/htseq-count-barcodes -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-qa to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -a -O--buildsystem=pybuild
dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-38-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 673835 new size 677288
dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-38-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 385904 new size 387430
dh_strip -a -a -O--buildsystem=pybuild
dh_makeshlibs -a -a -O--buildsystem=pybuild
dh_shlibdeps -a -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_0.12.4-1_armhf.deb'.
dpkg-deb: building package 'python3-htseq' in '../python3-htseq_0.12.4-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../htseq_0.12.4-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-10-20T05:42:45Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
htseq_0.12.4-1_armhf.changes:
-----------------------------
Format: 1.8
Date: Wed, 14 Oct 2020 16:53:52 +0200
Source: htseq
Binary: python3-htseq python3-htseq-dbgsym
Architecture: armhf
Version: 0.12.4-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-htseq - Python3 high-throughput genome sequencing read analysis utilities
Changes:
htseq (0.12.4-1) unstable; urgency=medium
.
* New upstream version
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
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9685f9a63c3d8fcc7a3d0c3dd90fe7844a65aee4 1142212 python3-htseq-dbgsym_0.12.4-1_armhf.deb
a5a8e5f5bd0e7eafc61dddc6a8af26c782867268 228516 python3-htseq_0.12.4-1_armhf.deb
Checksums-Sha256:
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c17d4f6b66b83f732c1196983f96e1c126b5af9cd11ce67497b7391c0e9fcca7 1142212 python3-htseq-dbgsym_0.12.4-1_armhf.deb
477da8e17014c3c6262af6b2a6b1b480de1b81a511737b7315a7b6a723916e4f 228516 python3-htseq_0.12.4-1_armhf.deb
Files:
cc2ca567841caa237bf38f53081d6ae7 7240 python optional htseq_0.12.4-1_armhf.buildinfo
5be227e1e69f29b9a054852164c8ce92 1142212 debug optional python3-htseq-dbgsym_0.12.4-1_armhf.deb
349f9258aa78a77668fde7edc169b2a5 228516 python optional python3-htseq_0.12.4-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-htseq-dbgsym_0.12.4-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 1142212 bytes: control archive=652 bytes.
430 bytes, 12 lines control
305 bytes, 3 lines md5sums
Package: python3-htseq-dbgsym
Source: htseq
Version: 0.12.4-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1227
Depends: python3-htseq (= 0.12.4-1)
Section: debug
Priority: optional
Description: debug symbols for python3-htseq
Build-Ids: 5e6be72d6d9c2e1a91cf5b8ccbe039215f84a608 a5ca558de0d0e02ef2f064a3476b878fd11aad28
drwxr-xr-x root/root 0 2020-10-14 14:53 ./
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/debug/.build-id/5e/
-rw-r--r-- root/root 244752 2020-10-14 14:53 ./usr/lib/debug/.build-id/5e/6be72d6d9c2e1a91cf5b8ccbe039215f84a608.debug
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/debug/.build-id/a5/
-rw-r--r-- root/root 992776 2020-10-14 14:53 ./usr/lib/debug/.build-id/a5/ca558de0d0e02ef2f064a3476b878fd11aad28.debug
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 3176 2020-10-14 14:53 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-htseq.debug
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/share/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-10-14 14:53 ./usr/share/doc/python3-htseq-dbgsym -> python3-htseq
python3-htseq_0.12.4-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 228516 bytes: control archive=1924 bytes.
1071 bytes, 25 lines control
1947 bytes, 23 lines md5sums
251 bytes, 12 lines * postinst #!/bin/sh
400 bytes, 12 lines * prerm #!/bin/sh
Package: python3-htseq
Source: htseq
Version: 0.12.4-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 814
Depends: python3 (<< 3.9), python3 (>= 3.8~), python3-numpy, python3-pysam, python3:any, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5)
Breaks: python-htseq (<= 0.9.1)
Provides: python-htseq
Section: python
Priority: optional
Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
Description: Python3 high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks
when working with high-throughput genome sequencing reads:
.
* Getting statistical summaries about the base-call quality scores to
study the data quality.
* Calculating a coverage vector and exporting it for visualization in
a genome browser.
* Reading in annotation data from a GFF file.
* Assigning aligned reads from an RNA-Seq experiments to exons and
genes.
.
This package contains the Python 3 module.
drwxr-xr-x root/root 0 2020-10-14 14:53 ./
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/bin/
-rwxr-xr-x root/root 75 2020-10-14 14:53 ./usr/bin/htseq-count
-rwxr-xr-x root/root 103 2020-10-14 14:53 ./usr/bin/htseq-count-barcodes
-rwxr-xr-x root/root 69 2020-10-14 14:53 ./usr/bin/htseq-qa
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/python3/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq-0.12.4.egg-info/
-rw-r--r-- root/root 3457 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq-0.12.4.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq-0.12.4.egg-info/dependency_links.txt
-rw-r--r-- root/root 28 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq-0.12.4.egg-info/requires.txt
-rw-r--r-- root/root 6 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq-0.12.4.egg-info/top_level.txt
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq/
-rw-r--r-- root/root 28266 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq/StepVector.py
-rw-r--r-- root/root 551264 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 1504 2020-04-19 23:45 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq_internal.py
-rw-r--r-- root/root 94468 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 36024 2020-04-19 23:45 ./usr/lib/python3/dist-packages/HTSeq/__init__.py
-rw-r--r-- root/root 22 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq/_version.py
-rw-r--r-- root/root 13468 2020-04-19 23:45 ./usr/lib/python3/dist-packages/HTSeq/features.py
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/lib/python3/dist-packages/HTSeq/scripts/
-rw-r--r-- root/root 0 2020-04-19 23:45 ./usr/lib/python3/dist-packages/HTSeq/scripts/__init__.py
-rw-r--r-- root/root 25372 2020-04-19 23:45 ./usr/lib/python3/dist-packages/HTSeq/scripts/count.py
-rw-r--r-- root/root 24277 2020-04-19 23:45 ./usr/lib/python3/dist-packages/HTSeq/scripts/count_with_barcodes.py
-rw-r--r-- root/root 10427 2020-04-19 23:45 ./usr/lib/python3/dist-packages/HTSeq/scripts/qa.py
-rw-r--r-- root/root 2216 2020-04-19 23:45 ./usr/lib/python3/dist-packages/HTSeq/utils.py
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/share/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/share/doc/python3-htseq/
-rw-r--r-- root/root 1540 2020-10-14 14:53 ./usr/share/doc/python3-htseq/changelog.Debian.gz
-rw-r--r-- root/root 959 2020-10-14 14:53 ./usr/share/doc/python3-htseq/copyright
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/share/man/
drwxr-xr-x root/root 0 2020-10-14 14:53 ./usr/share/man/man1/
-rw-r--r-- root/root 5662 2020-10-14 14:53 ./usr/share/man/man1/htseq-count.1.gz
-rw-r--r-- root/root 1994 2020-10-14 14:53 ./usr/share/man/man1/htseq-qa.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 19956
Build-Time: 321
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 786
Job: htseq_0.12.4-1
Machine Architecture: armhf
Package: htseq
Package-Time: 1157
Source-Version: 0.12.4-1
Space: 19956
Status: successful
Version: 0.12.4-1
--------------------------------------------------------------------------------
Finished at 2020-10-20T05:42:45Z
Build needed 00:19:17, 19956k disc space