hmmer →
3.4+dfsg-2 →
armhf → 2023-09-22 21:52:26
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| hmmer 3.4+dfsg-2 (armhf) Fri, 22 Sep 2023 19:09:53 +0000 |
+==============================================================================+
Package: hmmer
Version: 3.4+dfsg-2
Source Version: 3.4+dfsg-2
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-2e709c6a-0c07-4463-a098-9a7459d740e0' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.6 MB]
Fetched 28.7 MB in 29s (977 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'hmmer' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/hmmer.git
Please use:
git clone https://salsa.debian.org/med-team/hmmer.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 13.3 MB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main hmmer 3.4+dfsg-2 (dsc) [2119 B]
Get:2 http://172.17.4.1/private trixie-staging/main hmmer 3.4+dfsg-2 (tar) [13.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main hmmer 3.4+dfsg-2 (diff) [12.8 kB]
Fetched 13.3 MB in 2s (8281 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/hmmer-Ynjpyf/hmmer-3.4+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/hmmer-Ynjpyf' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-r0bkh1/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-r0bkh1/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-r0bkh1/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2641 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 4 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11775 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3
Filtered Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3
dpkg-deb: building package 'sbuild-build-depends-hmmer-dummy' in '/<<BUILDDIR>>/resolver-r0bkh1/apt_archive/sbuild-build-depends-hmmer-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-hmmer-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ Sources [510 B]
Get:5 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ Packages [585 B]
Fetched 2428 B in 1s (3264 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install hmmer build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl
libdivsufsort-dev libdivsufsort3 libelf1 libexpat1
libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1
libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
po-debconf python3 python3-minimal python3.11 python3.11-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv
python3.11-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
ca-certificates
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl
libdivsufsort-dev libdivsufsort3 libelf1 libexpat1
libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1
libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
po-debconf python3 python3-minimal python3.11 python3.11-minimal
sbuild-build-depends-hmmer-dummy
0 upgraded, 41 newly installed, 0 to remove and 4 not upgraded.
Need to get 22.8 MB of archives.
After this operation, 90.2 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-r0bkh1/apt_archive ./ sbuild-build-depends-hmmer-dummy 0.invalid.0 [876 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.5-3 [800 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.5-3 [1676 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.5-3 [1675 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.5-3 [582 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:10 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.22.4-10 [774 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-1 [80.5 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-12 [156 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-12 [1201 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libdivsufsort3 armhf 2.0.1-5 [43.2 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libdivsufsort-dev armhf 2.0.1-5 [19.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libpython3.11-minimal:armhf.
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Setting up media-types (10.1.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up bsdextrautils (2.39.2-1) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libpython3.11-stdlib:armhf (3.11.5-3) ...
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Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up libpython3-stdlib:armhf (3.11.4-5) ...
Setting up libdivsufsort-dev:armhf (2.0.1-5) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up python3.11 (3.11.5-3) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-7) ...
Setting up python3 (3.11.4-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.11.6) ...
Setting up sbuild-build-depends-hmmer-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 bsdextrautils_2.39.2-1 bsdutils_1:2.39.2-1 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.6 debianutils_5.13 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-4 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-12 gettext-base_0.21-12 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-3 libacl1_2.3.1-3 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.6-1 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.40-2+rpi2 libblkid1_2.39.2-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.40-2+rpi2 libctf0_2.40-2+rpi2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdivsufsort-dev_2.0.1-5 libdivsufsort3_2.0.1-5 libdpkg-perl_1.21.22+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.47-2 libgssapi-krb5-2_1.20.1-3 libhogweed6_3.9.1-2 libicu72_72.1-3 libidn2-0_2.3.4-1 libisl23_0.26-3 libjansson4_2.14-2 libk5crypto3_1.20.1-3 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-3 libkrb5support0_1.20.1-3 libksba8_1.6.3-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4+20230625-2 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.0-4 libpam-cap_1:2.66-4 libpam-modules_1.5.2-7 libpam-modules-bin_1.5.2-7 libpam-runtime_1.5.2-7 libpam0g_1.5.2-7 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpython3-stdlib_3.11.4-5 libpython3.11-minimal_3.11.5-3 libpython3.11-stdlib_3.11.5-3 libreadline8_8.2-1.3 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.5-1 libsmartcols1_2.39.2-1 libsqlite3-0_3.43.1-1 libss2_1.47.0-2 libssl1.1_1.1.1o-1 libssl3_3.0.10-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.12-1~deb12u1+rpi1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.12-1~deb12u1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.2-1 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.1-1 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.1.38-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 media-types_10.1.0 mount_2.39.2-1 nano_7.2-1 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 netbase_6.4 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python3_3.11.4-5 python3-minimal_3.11.4-5 python3.11_3.11.5-3 python3.11-minimal_3.11.5-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-hmmer-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.07-1 tar_1.34+dfsg-1.2 tzdata_2023c-10 usrmerge_37 util-linux_2.39.2-1 util-linux-extra_2.39.2-1 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Fri Sep 15 08:10:47 2023 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./hmmer_3.4+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting hmmer in /<<BUILDDIR>>/hmmer-3.4+dfsg
dpkg-source: info: unpacking hmmer_3.4+dfsg.orig.tar.xz
dpkg-source: info: unpacking hmmer_3.4+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_manpage_extension.patch
dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch
dpkg-source: info: applying verbose-easel
dpkg-source: info: applying skip_threads_check
dpkg-source: info: applying sub_make_parallel
dpkg-source: info: applying spelling
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-2e709c6a-0c07-4463-a098-9a7459d740e0
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package hmmer
dpkg-buildpackage: info: source version 3.4+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
dh_auto_clean
rm -f testsuite/esltmp*
rm -f easel/testsuite/esltmp*
rm -f tutorial/MADE1.hmm.h3?
rm -f config.log config.status configure
find . -name Makefile -delete
make[1]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
debian/rules override_dh_autoreconf
make[1]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
AUTOHEADER=true dh_autoreconf
make[1]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" dh_auto_configure -- --enable-threads
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads
configure: Configuring HMMER3 for your system.
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking whether to compile using MPI... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking how to run the C preprocessor... gcc -E
checking for a BSD-compatible install... /usr/bin/install -c
checking for strip... strip
checking for ranlib... ranlib
checking for ar... /usr/bin/ar
checking whether ln -s works... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether gcc is Clang... no
checking whether pthreads work with "-pthread" and "-lpthread"... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking whether gcc can compile our NEON code... yes, armv7 flavor, with -mfpu=neon
checking whether gcc can compile our Altivec/VMX code... no
checking whether gcc can compile our SSE code... no
checking whether gcc can compile our NEON code... yes, armv7 flavor, with -mfpu=neon
configure: Activating ARM Neon vector DP implementation
checking compiler support --start-group... yes
checking for gzip... /usr/bin/gzip
checking for python3... yes
checking for library containing clock_gettime... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for endian.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for netinet/in.h... yes
checking for sys/param.h... yes
checking for sys/sysctl.h... no
checking for arm_neon.h... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for off_t... yes
checking whether byte ordering is bigendian... no
checking whether C compiler accepts -mlittle-endian... yes
checking for __attribute__((noreturn))... yes
checking for __attribute__((format))... yes
checking for mkstemp... yes
checking for popen... yes
checking for putenv... yes
checking for strcasecmp... yes
checking for strsep... yes
checking for times... yes
checking for getpid... yes
checking for sysctl... no
checking for sysconf... yes
checking for getcwd... yes
checking for chmod... yes
checking for stat... yes
checking for fstat... yes
checking for erfc... no
checking for library containing ntohs... none required
checking for library containing ntohl... none required
checking for library containing htons... none required
checking for library containing htonl... none required
checking for library containing socket... none required
checking for library containing inet_pton... none required
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating testsuite/Makefile
config.status: creating profmark/Makefile
config.status: creating src/impl_neon/Makefile
config.status: creating documentation/Makefile
config.status: creating documentation/man/Makefile
config.status: creating documentation/userguide/Makefile
config.status: creating documentation/userguide/inclusions/Makefile
config.status: creating easel/Makefile
config.status: creating easel/miniapps/Makefile
config.status: creating easel/testsuite/Makefile
config.status: creating easel/documentation/Makefile
config.status: creating documentation/userguide/titlepage.tex
config.status: creating documentation/userguide/titlepage_daemon.tex
config.status: creating documentation/userguide/copyright.tex
config.status: creating documentation/man/alimask.man
config.status: creating documentation/man/hmmalign.man
config.status: creating documentation/man/hmmbuild.man
config.status: creating documentation/man/hmmc2.man
config.status: creating documentation/man/hmmconvert.man
config.status: creating documentation/man/hmmemit.man
config.status: creating documentation/man/hmmer.man
config.status: creating documentation/man/hmmfetch.man
config.status: creating documentation/man/hmmlogo.man
config.status: creating documentation/man/hmmpgmd.man
config.status: creating documentation/man/hmmpgmd_shard.man
config.status: creating documentation/man/hmmpress.man
config.status: creating documentation/man/hmmscan.man
config.status: creating documentation/man/hmmsearch.man
config.status: creating documentation/man/hmmsim.man
config.status: creating documentation/man/hmmstat.man
config.status: creating documentation/man/jackhmmer.man
config.status: creating documentation/man/makehmmerdb.man
config.status: creating documentation/man/nhmmer.man
config.status: creating documentation/man/nhmmscan.man
config.status: creating documentation/man/phmmer.man
config.status: creating easel/miniapps/esl-afetch.man
config.status: creating easel/miniapps/esl-alimanip.man
config.status: creating easel/miniapps/esl-alimap.man
config.status: creating easel/miniapps/esl-alimask.man
config.status: creating easel/miniapps/esl-alimerge.man
config.status: creating easel/miniapps/esl-alipid.man
config.status: creating easel/miniapps/esl-alirev.man
config.status: creating easel/miniapps/esl-alistat.man
config.status: creating easel/miniapps/esl-compalign.man
config.status: creating easel/miniapps/esl-compstruct.man
config.status: creating easel/miniapps/esl-construct.man
config.status: creating easel/miniapps/esl-histplot.man
config.status: creating easel/miniapps/esl-mask.man
config.status: creating easel/miniapps/esl-mixdchlet.man
config.status: creating easel/miniapps/esl-reformat.man
config.status: creating easel/miniapps/esl-selectn.man
config.status: creating easel/miniapps/esl-seqrange.man
config.status: creating easel/miniapps/esl-seqstat.man
config.status: creating easel/miniapps/esl-sfetch.man
config.status: creating easel/miniapps/esl-shuffle.man
config.status: creating easel/miniapps/esl-ssdraw.man
config.status: creating easel/miniapps/esl-translate.man
config.status: creating easel/miniapps/esl-weight.man
config.status: creating easel/decoy_config.h
config.status: creating src/p7_config.h
config.status: creating easel/esl_config.h
config.status: linking src/impl_neon to src/impl
HMMER configuration:
compiler: gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -mfpu=neon -mlittle-endian -pthread
host: arm-unknown-linux-gnueabihf
linker: -Wl,-z,relro -Wl,-z,now -flto
libraries: -lpthread
DP implementation: neon
Now do 'make' to build HMMER, and optionally:
'make check' to run self tests,
'make install' to install programs and man pages,
'(cd easel; make install)' to install Easel tools.
make[1]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
export V=VERBOSE ; dh_auto_build
make -j4
make[2]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make -C easel all
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c easel.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_alloc.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_alphabet.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_arr2.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_arr3.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_bitfield.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_buffer.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_cluster.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_composition.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_cpu.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_dirichlet.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_distance.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_dmatrix.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_dsqdata.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_exponential.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_fileparser.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_gamma.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_gencode.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_getopts.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_gev.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_graph.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_gumbel.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_heap.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_histogram.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_hmm.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_huffman.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_hyperexp.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_iset.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_json.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_keyhash.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_lognormal.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_matrixops.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_mem.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_minimizer.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_mixdchlet.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_mixgev.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_mpi.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msa.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msacluster.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile2.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_a2m.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_afa.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_clustal.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_phylip.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_psiblast.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_selex.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_stockholm.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msashuffle.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msaweight.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_normal.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_paml.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_quicksort.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_random.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_rand64.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_randomseq.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_ratematrix.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_recorder.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_red_black.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_regexp.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_rootfinder.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_scorematrix.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_sq.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_sqio.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_sqio_ascii.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_sqio_ncbi.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_ssi.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_stack.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_stats.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_stopwatch.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_stretchexp.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_subcmd.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_threads.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_tree.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_varint.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_vectorops.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_weibull.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_workqueue.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_wuss.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_sse.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_avx.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_avx512.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -c esl_neon.c
gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_vmx.c
/usr/bin/ar -r libeasel.a easel.o esl_alloc.o esl_alphabet.o esl_arr2.o esl_arr3.o esl_bitfield.o esl_buffer.o esl_cluster.o esl_composition.o esl_cpu.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_graph.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_huffman.o esl_hyperexp.o esl_iset.o esl_json.o esl_keyhash.o esl_lognormal.o esl_matrixops.o esl_mem.o esl_minimizer.o esl_mixdchlet.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_quicksort.o esl_random.o esl_rand64.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_red_black.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_subcmd.o esl_threads.o esl_tree.o esl_varint.o esl_vectorops.o esl_weibull.o esl_workqueue.o esl_wuss.o esl_sse.o esl_avx.o esl_avx512.o esl_neon.o esl_vmx.o > /dev/null 2>&1
make -C miniapps all
make[4]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel/miniapps'
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-afetch esl-afetch.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimanip esl-alimanip.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 5 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimap esl-alimap.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimask esl-alimask.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimerge esl-alimerge.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alipid esl-alipid.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alirev esl-alirev.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alistat esl-alistat.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compalign esl-compalign.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compstruct esl-compstruct.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-construct esl-construct.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-histplot esl-histplot.c -leasel -lpthread -lm
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mask esl-mask.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mixdchlet esl-mixdchlet.c -leasel -lpthread -lm
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-reformat esl-reformat.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 5 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-selectn esl-selectn.c -leasel -lpthread -lm
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqrange esl-seqrange.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqstat esl-seqstat.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-sfetch esl-sfetch.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 5 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-shuffle esl-shuffle.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-ssdraw esl-ssdraw.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 5 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-translate esl-translate.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-weight esl-weight.c -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_alistat.c
gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_downsample.c
gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_filter.c
gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_index.c
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o easel easel.c cmd_alistat.o cmd_downsample.o cmd_filter.o cmd_index.o -leasel -lpthread -lm
lto-wrapper: warning: using serial compilation of 5 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
make[4]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel/miniapps'
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel'
make -C src all
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o alimask.o -c alimask.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o build.o -c build.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb.o -c cachedb.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb_shard.o -c cachedb_shard.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o emit.o -c emit.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o errors.o -c errors.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o evalues.o -c evalues.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o eweight.o -c eweight.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_decoding.o -c generic_decoding.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_chk.o -c generic_fwdback_chk.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_banded.o -c generic_fwdback_banded.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_null2.o -c generic_null2.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_msv.o -c generic_msv.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_optacc.o -c generic_optacc.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o h2_io.o -c h2_io.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o heatmap.o -c heatmap.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmlogo.o -c hmmlogo.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr.o -c hmmdmstr.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr_shard.o -c hmmdmstr_shard.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmd_search_status.o -c hmmd_search_status.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr.o -c hmmdwrkr.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr_shard.o -c hmmdwrkr_shard.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdutils.o -c hmmdutils.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmer.o -c hmmer.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o logsum.o -c logsum.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelconfig.o -c modelconfig.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelstats.o -c modelstats.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o mpisupport.o -c mpisupport.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o seqmodel.o -c seqmodel.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o tracealign.o -c tracealign.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_bg.o -c p7_bg.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_builder.o -c p7_builder.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domain.o -c p7_domain.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gbands.o -c p7_gbands.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmx.o -c p7_gmx.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxb.o -c p7_gmxb.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxchk.o -c p7_gmxchk.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hit.o -c p7_hit.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmm.o -c p7_hmm.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmcache.o -c p7_hmmcache.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmwindow.o -c p7_hmmwindow.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_prior.o -c p7_prior.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_profile.o -c p7_profile.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_tophits.o -c p7_tophits.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_trace.o -c p7_trace.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_scoredata.o -c p7_scoredata.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd2msa.o -c hmmpgmd2msa.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_alphabet.o -c fm_alphabet.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_general.o -c fm_general.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_sse.o -c fm_sse.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_ssv.o -c fm_ssv.c
/usr/bin/ar -r libhmmer.a build.o cachedb.o cachedb_shard.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdmstr_shard.o hmmd_search_status.o hmmdwrkr.o hmmdwrkr_shard.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domain.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hit.o p7_hmm.o p7_hmmcache.o p7_hmmd_search_stats.o p7_hmmfile.o p7_hmmwindow.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1
make -C impl_neon libhmmer-impl.stamp
make[4]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src/impl_neon'
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o decoding.o -c decoding.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o fwdback.o -c fwdback.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o io.o -c io.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o ssvfilter.o -c ssvfilter.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o msvfilter.o -c msvfilter.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o null2.o -c null2.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o optacc.o -c optacc.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o stotrace.o -c stotrace.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o vitfilter.o -c vitfilter.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_omx.o -c p7_omx.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o mpi.o -c mpi.c
/usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1
make[4]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src/impl_neon'
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmalign.o -c hmmalign.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 10 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmbuild.o -c hmmbuild.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 8 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmconvert.o -c hmmconvert.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 6 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmemit.o -c hmmemit.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 6 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmfetch.o -c hmmfetch.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 6 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 5 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd.o -c hmmpgmd.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 11 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd_shard.o -c hmmpgmd_shard.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpgmd_shard hmmpgmd_shard.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 11 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpress.o -c hmmpress.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 6 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmscan.o -c hmmscan.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 10 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsearch.o -c hmmsearch.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 10 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsim.o -c hmmsim.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 6 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmstat.o -c hmmstat.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 5 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o jackhmmer.o -c jackhmmer.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 12 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o phmmer.o -c phmmer.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 10 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmer.o -c nhmmer.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 13 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmscan.o -c nhmmscan.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 10 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o makehmmerdb.o -c makehmmerdb.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmc2.o -c hmmc2.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lpthread -lm
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src'
make -C profmark all
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lpthread -lm
../easel/esl_ssi.h:115:13: warning: type of 'esl_ssi_FindNumber' does not match original declaration [-Wlto-type-mismatch]
115 | extern int esl_ssi_FindNumber(ESL_SSI *ssi, int64_t nkey,
| ^
../easel/esl_ssi.c:253:1: note: 'esl_ssi_FindNumber' was previously declared here
253 | esl_ssi_FindNumber(ESL_SSI *ssi, int64_t nkey, uint16_t *opt_fh, off_t *opt_roff, off_t *opt_doff, int64_t *opt_L, char **opt_pkey)
| ^
../easel/esl_ssi.c:253:1: note: code may be misoptimized unless '-fno-strict-aliasing' is used
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lpthread -lm
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/profmark'
make[2]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
export V=VERBOSE ; make check -j4 | tee debian/test_log
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[2]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make -C easel tests
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o easel_utest -I. -I. -L. -DeslEASEL_TESTDRIVE ./easel.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alloc_utest -I. -I. -L. -DeslALLOC_TESTDRIVE ./esl_alloc.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alphabet_utest -I. -I. -L. -DeslALPHABET_TESTDRIVE ./esl_alphabet.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_bitfield_utest -I. -I. -L. -DeslBITFIELD_TESTDRIVE ./esl_bitfield.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_buffer_utest -I. -I. -L. -DeslBUFFER_TESTDRIVE ./esl_buffer.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cluster_utest -I. -I. -L. -DeslCLUSTER_TESTDRIVE ./esl_cluster.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cpu_utest -I. -I. -L. -DeslCPU_TESTDRIVE ./esl_cpu.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dirichlet_utest -I. -I. -L. -DeslDIRICHLET_TESTDRIVE ./esl_dirichlet.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_distance_utest -I. -I. -L. -DeslDISTANCE_TESTDRIVE ./esl_distance.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dmatrix_utest -I. -I. -L. -DeslDMATRIX_TESTDRIVE ./esl_dmatrix.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dsqdata_utest -I. -I. -L. -DeslDSQDATA_TESTDRIVE ./esl_dsqdata.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_exponential_utest -I. -I. -L. -DeslEXPONENTIAL_TESTDRIVE ./esl_exponential.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_fileparser_utest -I. -I. -L. -DeslFILEPARSER_TESTDRIVE ./esl_fileparser.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gamma_utest -I. -I. -L. -DeslGAMMA_TESTDRIVE ./esl_gamma.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gencode_utest -I. -I. -L. -DeslGENCODE_TESTDRIVE ./esl_gencode.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_getopts_utest -I. -I. -L. -DeslGETOPTS_TESTDRIVE ./esl_getopts.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_graph_utest -I. -I. -L. -DeslGRAPH_TESTDRIVE ./esl_graph.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gumbel_utest -I. -I. -L. -DeslGUMBEL_TESTDRIVE ./esl_gumbel.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_heap_utest -I. -I. -L. -DeslHEAP_TESTDRIVE ./esl_heap.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_histogram_utest -I. -I. -L. -DeslHISTOGRAM_TESTDRIVE ./esl_histogram.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hmm_utest -I. -I. -L. -DeslHMM_TESTDRIVE ./esl_hmm.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_huffman_utest -I. -I. -L. -DeslHUFFMAN_TESTDRIVE ./esl_huffman.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hyperexp_utest -I. -I. -L. -DeslHYPEREXP_TESTDRIVE ./esl_hyperexp.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_iset_utest -I. -I. -L. -DeslISET_TESTDRIVE ./esl_iset.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_json_utest -I. -I. -L. -DeslJSON_TESTDRIVE ./esl_json.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_keyhash_utest -I. -I. -L. -DeslKEYHASH_TESTDRIVE ./esl_keyhash.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_lognormal_utest -I. -I. -L. -DeslLOGNORMAL_TESTDRIVE ./esl_lognormal.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_matrixops_utest -I. -I. -L. -DeslMATRIXOPS_TESTDRIVE ./esl_matrixops.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mem_utest -I. -I. -L. -DeslMEM_TESTDRIVE ./esl_mem.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_minimizer_utest -I. -I. -L. -DeslMINIMIZER_TESTDRIVE ./esl_minimizer.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mixdchlet_utest -I. -I. -L. -DeslMIXDCHLET_TESTDRIVE ./esl_mixdchlet.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msa_utest -I. -I. -L. -DeslMSA_TESTDRIVE ./esl_msa.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msacluster_utest -I. -I. -L. -DeslMSACLUSTER_TESTDRIVE ./esl_msacluster.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_utest -I. -I. -L. -DeslMSAFILE_TESTDRIVE ./esl_msafile.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile2_utest -I. -I. -L. -DeslMSAFILE2_TESTDRIVE ./esl_msafile2.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_a2m_utest -I. -I. -L. -DeslMSAFILE_A2M_TESTDRIVE ./esl_msafile_a2m.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_afa_utest -I. -I. -L. -DeslMSAFILE_AFA_TESTDRIVE ./esl_msafile_afa.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_clustal_utest -I. -I. -L. -DeslMSAFILE_CLUSTAL_TESTDRIVE ./esl_msafile_clustal.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_phylip_utest -I. -I. -L. -DeslMSAFILE_PHYLIP_TESTDRIVE ./esl_msafile_phylip.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_psiblast_utest -I. -I. -L. -DeslMSAFILE_PSIBLAST_TESTDRIVE ./esl_msafile_psiblast.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_selex_utest -I. -I. -L. -DeslMSAFILE_SELEX_TESTDRIVE ./esl_msafile_selex.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_stockholm_utest -I. -I. -L. -DeslMSAFILE_STOCKHOLM_TESTDRIVE ./esl_msafile_stockholm.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msaweight_utest -I. -I. -L. -DeslMSAWEIGHT_TESTDRIVE ./esl_msaweight.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_normal_utest -I. -I. -L. -DeslNORMAL_TESTDRIVE ./esl_normal.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_quicksort_utest -I. -I. -L. -DeslQUICKSORT_TESTDRIVE ./esl_quicksort.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_random_utest -I. -I. -L. -DeslRANDOM_TESTDRIVE ./esl_random.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rand64_utest -I. -I. -L. -DeslRAND64_TESTDRIVE ./esl_rand64.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_randomseq_utest -I. -I. -L. -DeslRANDOMSEQ_TESTDRIVE ./esl_randomseq.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ratematrix_utest -I. -I. -L. -DeslRATEMATRIX_TESTDRIVE ./esl_ratematrix.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_red_black_utest -I. -I. -L. -DeslRED_BLACK_TESTDRIVE ./esl_red_black.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_recorder_utest -I. -I. -L. -DeslRECORDER_TESTDRIVE ./esl_recorder.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_regexp_utest -I. -I. -L. -DeslREGEXP_TESTDRIVE ./esl_regexp.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rootfinder_utest -I. -I. -L. -DeslROOTFINDER_TESTDRIVE ./esl_rootfinder.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_scorematrix_utest -I. -I. -L. -DeslSCOREMATRIX_TESTDRIVE ./esl_scorematrix.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sq_utest -I. -I. -L. -DeslSQ_TESTDRIVE ./esl_sq.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sqio_utest -I. -I. -L. -DeslSQIO_TESTDRIVE ./esl_sqio.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ssi_utest -I. -I. -L. -DeslSSI_TESTDRIVE ./esl_ssi.c -leasel -lm -lpthread
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stack_utest -I. -I. -L. -DeslSTACK_TESTDRIVE ./esl_stack.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stats_utest -I. -I. -L. -DeslSTATS_TESTDRIVE ./esl_stats.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stretchexp_utest -I. -I. -L. -DeslSTRETCHEXP_TESTDRIVE ./esl_stretchexp.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_tree_utest -I. -I. -L. -DeslTREE_TESTDRIVE ./esl_tree.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_varint_utest -I. -I. -L. -DeslVARINT_TESTDRIVE ./esl_varint.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vectorops_utest -I. -I. -L. -DeslVECTOROPS_TESTDRIVE ./esl_vectorops.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_weibull_utest -I. -I. -L. -DeslWEIBULL_TESTDRIVE ./esl_weibull.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_wuss_utest -I. -I. -L. -DeslWUSS_TESTDRIVE ./esl_wuss.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sse_utest -I. -I. -L. -DeslSSE_TESTDRIVE ./esl_sse.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx_utest -I. -I. -L. -DeslAVX_TESTDRIVE ./esl_avx.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx512_utest -I. -I. -L. -DeslAVX512_TESTDRIVE ./esl_avx512.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_neon_utest -I. -I. -L. -DeslNEON_TESTDRIVE ./esl_neon.c -leasel -lm -lpthread
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vmx_utest -I. -I. -L. -DeslVMX_TESTDRIVE ./esl_vmx.c -leasel -lm -lpthread
make -C miniapps tests
make[4]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel/miniapps'
make[4]: Nothing to be done for 'tests'.
make[4]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel/miniapps'
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel'
make -C src tests
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make -C impl_neon libhmmer-impl.stamp
make[4]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src/impl_neon'
make[4]: 'libhmmer-impl.stamp' is up to date.
make[4]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src/impl_neon'
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7BUILD_TESTDRIVE -o build_utest ./build.c -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_TESTDRIVE -o generic_fwdback_utest ./generic_fwdback.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_CHK_TESTDRIVE -o generic_fwdback_chk_utest ./generic_fwdback_chk.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_MSV_TESTDRIVE -o generic_msv_utest ./generic_msv.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_STOTRACE_TESTDRIVE -o generic_stotrace_utest ./generic_stotrace.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_VITERBI_TESTDRIVE -o generic_viterbi_utest ./generic_viterbi.c -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMER_TESTDRIVE -o hmmer_utest ./hmmer.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7LOGSUM_TESTDRIVE -o logsum_utest ./logsum.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7MODELCONFIG_TESTDRIVE -o modelconfig_utest ./modelconfig.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7SEQMODEL_TESTDRIVE -o seqmodel_utest ./seqmodel.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7ALIDISPLAY_TESTDRIVE -o p7_alidisplay_utest ./p7_alidisplay.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7BG_TESTDRIVE -o p7_bg_utest ./p7_bg.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7DOMAIN_TESTDRIVE -o p7_domain_utest ./p7_domain.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GMX_TESTDRIVE -o p7_gmx_utest ./p7_gmx.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GMXCHK_TESTDRIVE -o p7_gmxchk_utest ./p7_gmxchk.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HIT_TESTDRIVE -o p7_hit_utest ./p7_hit.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATS_TESTDRIVE -o p7_hmmd_search_stats_utest ./p7_hmmd_search_stats.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMM_TESTDRIVE -o p7_hmm_utest ./p7_hmm.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMFILE_TESTDRIVE -o p7_hmmfile_utest ./p7_hmmfile.c -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 5 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7PROFILE_TESTDRIVE -o p7_profile_utest ./p7_profile.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7TOPHITS_TESTDRIVE -o p7_tophits_utest ./p7_tophits.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7TRACE_TESTDRIVE -o p7_trace_utest ./p7_trace.c -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7SCOREDATA_TESTDRIVE -o p7_scoredata_utest ./p7_scoredata.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMPGMD2MSA_TESTDRIVE -o hmmpgmd2msa_utest ./hmmpgmd2msa.c -lhmmer -leasel -ldivsufsort -lpthread -lm
lto-wrapper: warning: using serial compilation of 7 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATUS_TESTDRIVE -o hmmd_search_status_utest ./hmmd_search_status.c -lhmmer -leasel -ldivsufsort -lpthread -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o itest_brute.o -c itest_brute.c
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o itest_brute itest_brute.o -lhmmer -leasel -ldivsufsort -lpthread -lm
make -C impl_neon tests
make[4]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src/impl_neon'
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7DECODING_TESTDRIVE -o decoding_utest ./decoding.c -lhmmer -leasel -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7FWDBACK_TESTDRIVE -o fwdback_utest ./fwdback.c -lhmmer -leasel -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7IO_TESTDRIVE -o io_utest ./io.c -lhmmer -leasel -lm
lto-wrapper: warning: using serial compilation of 6 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7MSVFILTER_TESTDRIVE -o msvfilter_utest ./msvfilter.c -lhmmer -leasel -lm
lto-wrapper: warning: using serial compilation of 4 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7NULL2_TESTDRIVE -o null2_utest ./null2.c -lhmmer -leasel -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7OPTACC_TESTDRIVE -o optacc_utest ./optacc.c -lhmmer -leasel -lm
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7STOTRACE_TESTDRIVE -o stotrace_utest ./stotrace.c -lhmmer -leasel -lm
gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7VITFILTER_TESTDRIVE -o vitfilter_utest ./vitfilter.c -lhmmer -leasel -lm
make[4]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src/impl_neon'
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src'
make -C easel check
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make -C miniapps check
make[4]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel/miniapps'
make[4]: Nothing to be done for 'check'.
make[4]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel/miniapps'
make -C testsuite check
make[4]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel/testsuite'
Running Easel test suite...
exercise 1 [ easel-utest] ... ok.
exercise 2 [ alloc-utest] ... ok.
exercise 3 [ alphabet-utest] ... ok.
exercise 4 [ avx-utest] ... ok.
exercise 5 [ avx512-utest] ... ok.
exercise 6 [ bitfield-utest] ... ok.
exercise 7 [ buffer-utest] ... ok.
exercise 8 [ cluster-utest] ... ok.
exercise 9 [ cpu-utest] ... ok.
exercise 10 [ dirichlet-utest] ... ok.
exercise 11 [ distance-utest] ... ok.
exercise 12 [ dmatrix-utest] ... ok.
exercise 13 [ dsqdata-utest] ... ok.
exercise 14 [ exponential-utest] ... ok.
exercise 15 [ fileparser-utest] ... ok.
exercise 16 [ gamma-utest] ... ok.
exercise 17 [ gencode-utest] ... ok.
exercise 18 [ getopts-utest] ... ok.
exercise 19 [ graph-utest] ... ok.
exercise 20 [ gumbel-utest] ... ok.
exercise 21 [ heap-utest] ... ok.
exercise 22 [ histogram-utest] ... ok.
exercise 23 [ huffman-utest] ... ok.
exercise 24 [ hyperexp-utest] ... ok.
exercise 25 [ iset-utest] ... ok.
exercise 26 [ json-utest] ... ok.
exercise 27 [ keyhash-utest] ... ok.
exercise 28 [ lognormal-utest] ... ok.
exercise 29 [ matrixops-utest] ... ok.
exercise 30 [ mem-utest] ... ok.
exercise 31 [ minimizer-utest] ... ok.
exercise 32 [ mixdchlet-utest] ... ok.
exercise 33 [ msa-utest] ... ok.
exercise 34 [ msacluster-utest] ... ok.
exercise 35 [ msafile] ... ok.
exercise 36 [ msafile2] ... ok.
exercise 37 [ msafile-a2m] ... ok.
exercise 38 [ msafile-afa] ... ok.
exercise 39 [ msafile-clustal] ... ok.
exercise 40 [ msafile-phylip] ... ok.
exercise 41 [ msafile-psiblast] ... ok.
exercise 42 [ msafile-selex] ... ok.
exercise 43 [ msafile-stockholm] ... ok.
exercise 44 [ msaweight-utest] ... ok.
exercise 45 [ neon-utest] ... ok.
exercise 46 [ normal-utest] ... ok.
exercise 47 [ quicksort-utest] ... ok.
exercise 48 [ random-utest] ... ok.
exercise 49 [ rand64-utest] ... ok.
exercise 50 [ randomseq-utest] ... ok.
exercise 51 [ ratematrix-utest] ... ok.
exercise 52 [ recorder-utest] ... ok.
exercise 53 [ red_black-utest] ... ok.
exercise 54 [ regexp-utest] ... ok.
exercise 55 [ rootfinder-utest] ... ok.
exercise 56 [ scorematrix-utest] ... ok.
exercise 57 [ sq-utest] ... ok.
exercise 58 [ sqio-utest] ... ok.
exercise 59 [ sse-utest] ... ok.
exercise 60 [ ssi-utest] ... ok.
exercise 61 [ stack-utest] ... ok.
exercise 62 [ stats-utest] ... ok.
exercise 63 [ stretchexp-utest] ... ok.
exercise 64 [ tree-utest] ... ok.
exercise 65 [ varint-utest] ... ok.
exercise 66 [ vectorops-utest] ... ok.
exercise 67 [ vmx-utest] ... ok.
exercise 68 [ weibull-utest] ... ok.
exercise 69 [ wuss-utest] ... ok.
exercise 70 [ e2] ... ok.
exercise 71 [ degen-residues] ... ok.
exercise 72 [ ncbi-indices] ... ok.
exercise 73 [ blank-gf] ... ok.
exercise 74 [ sindi] ... ok.
exercise 75 [ esl-translate] ... ok.
exercise 76 [ esl-afetch] ... ok.
exercise 77 [ esl-alimanip] ... ok.
exercise 78 [ esl-alimap] ... ok.
exercise 79 [ esl-alimask] ... ok.
exercise 80 [ esl-alimerge] ... ok.
exercise 81 [ esl-alistat] ... ok.
exercise 82 [ esl-compalign] ... ok.
exercise 83 [ esl-construct] ... ok.
exercise 84 [ esl-mask] ... ok.
exercise 85 [ esl-seqrange] ... ok.
exercise 86 [ esl-shuffle] ... ok.
exercise 87 [ esl-ssdraw] ... ok.
All 87 exercises at level <= 2 passed.
System information:
Fri Sep 22 21:46:43 UTC 2023
Linux bm-wb-04 4.9.0-0.bpo.4-armmp #1 SMP Debian 4.9.51-1~bpo8+1 (2017-10-17) armv7l GNU/Linux
make[4]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel/testsuite'
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel'
make -C testsuite check
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
Running HMMER test suite...
exercise 1 [ hmmer] ... ok.
exercise 2 [ build] ... ok.
exercise 3 [ generic_fwdback] ... ok.
exercise 4 [ generic_msv] ... ok.
exercise 5 [ generic_stotrace] ... ok.
exercise 6 [ generic_viterbi] ... ok.
exercise 7 [ hmmd_search_status] ... ok.
exercise 8 [ logsum] ... ok.
exercise 9 [ modelconfig] ... ok.
exercise 10 [ seqmodel] ... ok.
exercise 11 [ p7_alidisplay] ... ok.
exercise 12 [ p7_bg] ... ok.
exercise 13 [ p7_domain] ... ok.
exercise 14 [ p7_gmx] ... ok.
exercise 15 [ p7_hit] ... ok.
exercise 16 [ p7_hmm] ... ok.
exercise 17 [ p7_hmmfile] ... ok.
exercise 18 [ p7_hmmd_search_stats] ... ok.
exercise 19 [ p7_profile] ... ok.
exercise 20 [ p7_tophits] ... ok.
exercise 21 [ p7_trace] ... ok.
exercise 22 [ p7_scoredata] ... ok.
exercise 23 [ decoding] ... ok.
exercise 24 [ fwdback] ... ok.
exercise 25 [ io] ... ok.
exercise 26 [ msvfilter] ... ok.
exercise 27 [ null2] ... ok.
exercise 28 [ optacc] ... ok.
exercise 29 [ stotrace] ... ok.
exercise 30 [ vitfilter] ... ok.
exercise 31 [ hmmpgmd2msa] ... ok.
exercise 32 [ hmmalign] ... ok.
exercise 33 [ hmmalign/-h] ... ok.
exercise 34 [ hmmalign/-o] ... ok.
exercise 35 [ hmmalign/--mapali] ... ok.
exercise 36 [ hmmalign/--trim] ... ok.
exercise 37 [ hmmalign/--amino] ... ok.
exercise 38 [ hmmalign/--informat] ... ok.
exercise 39 [ hmmalign/--outformat] ... ok.
exercise 40 [ hmmbuild] ... ok.
exercise 41 [ build/-h] ... ok.
exercise 42 [ build/-n] ... ok.
exercise 43 [ build/-o] ... ok.
exercise 44 [ build/-O] ... ok.
exercise 45 [ build/--amino] ... ok.
exercise 46 [ build/--dna] ... ok.
exercise 47 [ build/--rna] ... ok.
exercise 48 [ build/--fast] ... ok.
exercise 49 [ build/--hand] ... ok.
exercise 50 [ build/--symfrac] ... ok.
exercise 51 [ build/--fragthresh] ... ok.
exercise 52 [ build/--wpb] ... ok.
exercise 53 [ build/--wgsc] ... ok.
exercise 54 [ build/--wblosum] ... ok.
exercise 55 [ build/--wnone] ... ok.
exercise 56 [ build/--wid] ... ok.
exercise 57 [ build/--eent] ... ok.
exercise 58 [ build/--eclust] ... ok.
exercise 59 [ build/--enone] ... ok.
exercise 60 [ build/--eset] ... ok.
exercise 61 [ build/--ere] ... ok.
exercise 62 [ build/--esigma] ... ok.
exercise 63 [ build/--eid] ... ok.
exercise 64 [ build/--pnone] ... ok.
exercise 65 [ build/--plaplace] ... ok.
exercise 66 [ build/--EmL] ... ok.
exercise 67 [ build/--EmN] ... ok.
exercise 68 [ build/--EvL] ... ok.
exercise 69 [ build/--EvN] ... ok.
exercise 70 [ build/--EfL] ... ok.
exercise 71 [ build/--EfN] ... ok.
exercise 72 [ build/--Eft] ... ok.
exercise 73 [ build/--informat] ... ok.
exercise 74 [ build/--seed] ... ok.
exercise 75 [ search] ... ok.
exercise 76 [ search/-h] ... ok.
exercise 77 [ search/-o] ... ok.
exercise 78 [ search/-A] ... ok.
exercise 79 [ search/--tblout] ... ok.
exercise 80 [ search/--domtblout] ... ok.
exercise 81 [ search/--pfamtblout] ... ok.
exercise 82 [ search/--acc] ... ok.
exercise 83 [ search/--noali] ... ok.
exercise 84 [ search/--notextw] ... ok.
exercise 85 [ search/--textw] ... ok.
exercise 86 [ search/-E] ... ok.
exercise 87 [ search/-T] ... ok.
exercise 88 [ search/--domE] ... ok.
exercise 89 [ search/--domT] ... ok.
exercise 90 [ search/--incE] ... ok.
exercise 91 [ search/--incT] ... ok.
exercise 92 [ search/--incdomE] ... ok.
exercise 93 [ search/--incdomT] ... ok.
exercise 94 [ search/--cut_ga] ... ok.
exercise 95 [ search/--cut_nc] ... ok.
exercise 96 [ search/--cut_tc] ... ok.
exercise 97 [ search/--max] ... ok.
exercise 98 [ search/--F1] ... ok.
exercise 99 [ search/--F2] ... ok.
exercise 100 [ search/--F3] ... ok.
exercise 101 [ search/--nobias] ... ok.
exercise 102 [ search/--nonull2] ... ok.
exercise 103 [ search/-Z] ... ok.
exercise 104 [ search/--domZ] ... ok.
exercise 105 [ search/--seed] ... ok.
exercise 106 [ search/--tformat] ... ok.
exercise 107 [ hmmscan] ... ok.
exercise 108 [ scan/-h] ... ok.
exercise 109 [ scan/-o] ... ok.
exercise 110 [ scan/--tblout] ... ok.
exercise 111 [ scan/--domtblout] ... ok.
exercise 112 [ scan/--pfamtblout] ... ok.
exercise 113 [ scan/--acc] ... ok.
exercise 114 [ scan/--noali] ... ok.
exercise 115 [ scan/--notextw] ... ok.
exercise 116 [ scan/--textw] ... ok.
exercise 117 [ scan/-E] ... ok.
exercise 118 [ scan/-T] ... ok.
exercise 119 [ scan/--domE] ... ok.
exercise 120 [ scan/--domT] ... ok.
exercise 121 [ scan/--incE] ... ok.
exercise 122 [ scan/--incT] ... ok.
exercise 123 [ scan/--incdomE] ... ok.
exercise 124 [ scan/--incdomT] ... ok.
exercise 125 [ scan/--incdomT] ... ok.
exercise 126 [ scan/--cut_ga] ... ok.
exercise 127 [ scan/--cut_nc] ... ok.
exercise 128 [ scan/--cut_tc] ... ok.
exercise 129 [ scan/--max] ... ok.
exercise 130 [ scan/--F1] ... ok.
exercise 131 [ scan/--F2] ... ok.
exercise 132 [ scan/--F3] ... ok.
exercise 133 [ scan/--nobias] ... ok.
exercise 134 [ scan/--nonull2] ... ok.
exercise 135 [ scan/-Z] ... ok.
exercise 136 [ scan/--domZ] ... ok.
exercise 137 [ scan/--seed] ... ok.
exercise 138 [ scan/--qformat] ... ok.
exercise 139 [ scan/--cpu] ... ok.
exercise 140 [ jackhmmer] ... ok.
exercise 141 [ j/-h] ... ok.
exercise 142 [ j/-N] ... ok.
exercise 143 [ j/-o] ... ok.
exercise 144 [ j/-A] ... ok.
exercise 145 [ j/--tblout] ... ok.
exercise 146 [ j/--domtblout] ... ok.
exercise 147 [ j/--chkhmm] ... ok.
exercise 148 [ j/--chkali] ... ok.
exercise 149 [ j/--acc] ... ok.
exercise 150 [ j/--noali] ... ok.
exercise 151 [ j/--notextw] ... ok.
exercise 152 [ j/--textw] ... ok.
exercise 153 [ j/--popen] ... ok.
exercise 154 [ j/--pextend] ... ok.
exercise 155 [ j/--mxfile] ... ok.
exercise 156 [ j/-E] ... ok.
exercise 157 [ j/-T] ... ok.
exercise 158 [ j/--domE] ... ok.
exercise 159 [ j/--domT] ... ok.
exercise 160 [ j/--incE] ... ok.
exercise 161 [ j/--incT] ... ok.
exercise 162 [ j/--incdomE] ... ok.
exercise 163 [ j/--incdomT] ... ok.
exercise 164 [ j/--max] ... ok.
exercise 165 [ j/--F1] ... ok.
exercise 166 [ j/--F2] ... ok.
exercise 167 [ j/--F3] ... ok.
exercise 168 [ j/--nobias] ... ok.
exercise 169 [ j/--EmL] ... ok.
exercise 170 [ j/--EmN] ... ok.
exercise 171 [ j/--EvL] ... ok.
exercise 172 [ j/--EvN] ... ok.
exercise 173 [ j/--EfL] ... ok.
exercise 174 [ j/--EfN] ... ok.
exercise 175 [ j/--Eft] ... ok.
exercise 176 [ j/--nonull2] ... ok.
exercise 177 [ j/-Z] ... ok.
exercise 178 [ j/--domZ] ... ok.
exercise 179 [ j/--seed] ... ok.
exercise 180 [ j/--qformat] ... ok.
exercise 181 [ j/--tformat] ... ok.
exercise 182 [ phmmer] ... ok.
exercise 183 [ phmmer/-h] ... ok.
exercise 184 [ phmmer/-o] ... ok.
exercise 185 [ phmmer/-A] ... ok.
exercise 186 [ phmmer/--tblout] ... ok.
exercise 187 [ phmmer/--domtblout] ... ok.
exercise 188 [ phmmer/--pfamtblout] ... ok.
exercise 189 [ phmmer/--acc] ... ok.
exercise 190 [ phmmer/--noali] ... ok.
exercise 191 [ phmmer/--notextw] ... ok.
exercise 192 [ phmmer/--textw] ... ok.
exercise 193 [ phmmer/--popen] ... ok.
exercise 194 [ phmmer/--pextend] ... ok.
exercise 195 [ phmmer/--mxfile] ... ok.
exercise 196 [ phmmer/-E] ... ok.
exercise 197 [ phmmer/-T] ... ok.
exercise 198 [ phmmer/--domE] ... ok.
exercise 199 [ phmmer/--domT] ... ok.
exercise 200 [ phmmer/--incE] ... ok.
exercise 201 [ phmmer/--incT] ... ok.
exercise 202 [ phmmer/--incdomE] ... ok.
exercise 203 [ phmmer/--incdomT] ... ok.
exercise 204 [ phmmer/--max] ... ok.
exercise 205 [ phmmer/--F1] ... ok.
exercise 206 [ phmmer/--F2] ... ok.
exercise 207 [ phmmer/--F3] ... ok.
exercise 208 [ phmmer/--nobias] ... ok.
exercise 209 [ phmmer/--EmL] ... ok.
exercise 210 [ phmmer/--EmN] ... ok.
exercise 211 [ phmmer/--EvL] ... ok.
exercise 212 [ phmmer/--EvN] ... ok.
exercise 213 [ phmmer/--EfL] ... ok.
exercise 214 [ phmmer/--EfN] ... ok.
exercise 215 [ phmmer/--Eft] ... ok.
exercise 216 [ phmmer/--nonull2] ... ok.
exercise 217 [ phmmer/-Z] ... ok.
exercise 218 [ phmmer/--domZ] ... ok.
exercise 219 [ phmmer/--seed] ... ok.
exercise 220 [ phmmer/--qformat] ... ok.
exercise 221 [ phmmer/--tformat] ... ok.
exercise 222 [ nhmmer] ... ok.
exercise 223 [ nhmmer/-h] ... ok.
exercise 224 [ nhmmer/-o] ... ok.
exercise 225 [ nhmmer/-A] ... ok.
exercise 226 [ nhmmer/--tblout] ... ok.
exercise 227 [ nhmmer/--dfamtblout] ... ok.
exercise 228 [ nhmmer/--acc] ... ok.
exercise 229 [ nhmmer/--noali] ... ok.
exercise 230 [ nhmmer/--notextw] ... ok.
exercise 231 [ nhmmer/--textw] ... ok.
exercise 232 [ nhmmer/-E] ... ok.
exercise 233 [ nhmmer/-T] ... ok.
exercise 234 [ nhmmer/--incE] ... ok.
exercise 235 [ nhmmer/--incT] ... ok.
exercise 236 [ nhmmer/--max] ... ok.
exercise 237 [ nhmmer/--F1] ... ok.
exercise 238 [ nhmmer/--F2] ... ok.
exercise 239 [ nhmmer/--F3] ... ok.
exercise 240 [ nhmmer/--nobias] ... ok.
exercise 241 [ nhmmer/--nonull2] ... ok.
exercise 242 [ nhmmer/-Z] ... ok.
exercise 243 [ nhmmer/--seed] ... ok.
exercise 244 [ nhmmscan] ... ok.
exercise 245 [ nhmmscan/-h] ... ok.
exercise 246 [ nhmmscan/-o] ... ok.
exercise 247 [ nhmmscan/--tblout] ... ok.
exercise 248 [nhmmscan/--dfamtblout] ... ok.
exercise 249 [ nhmmscan/--acc] ... ok.
exercise 250 [ nhmmscan/--noali] ... ok.
exercise 251 [ nhmmscan/--notextw] ... ok.
exercise 252 [ nhmmscan/--textw] ... ok.
exercise 253 [ nhmmscan/-E] ... ok.
exercise 254 [ nhmmscan/-T] ... ok.
exercise 255 [ nhmmscan/--incE] ... ok.
exercise 256 [ nhmmscan/--incT] ... ok.
exercise 257 [ nhmmscan/--max] ... ok.
exercise 258 [ nhmmscan/--F1] ... ok.
exercise 259 [ nhmmscan/--F2] ... ok.
exercise 260 [ nhmmscan/--F3] ... ok.
exercise 261 [ nhmmscan/--nobias] ... ok.
exercise 262 [ nhmmscan/--nonull2] ... ok.
exercise 263 [ nhmmscan/-Z] ... ok.
exercise 264 [ nhmmscan/--seed] ... ok.
exercise 265 [ hmmemit] ... ok.
exercise 266 [ hmmemit/-h] ... ok.
exercise 267 [ hmmemit/-c] ... ok.
exercise 268 [ hmmemit/-o] ... ok.
exercise 269 [ hmmemit/-p] ... ok.
exercise 270 [ hmmemit/-N] ... ok.
exercise 271 [ hmmemit/-L] ... ok.
exercise 272 [ hmmemit/--local] ... ok.
exercise 273 [ hmmemit/--unilocal] ... ok.
exercise 274 [ hmmemit/--glocal] ... ok.
exercise 275 [ hmmemit/--uniglocal] ... ok.
exercise 276 [ hmmfetch] ... ok.
exercise 277 [ hmmstat] ... ok.
exercise 278 [ hmmlogo] ... ok.
exercise 279 [ hmmconvert] ... ok.
exercise 280 [ hmmsim] ... ok.
exercise 281 [ hmmbuild_variation] ... ok.
exercise 282 [ hmmscan_variation] ... ok.
exercise 283 [ hmmsearch_variation] ... ok.
exercise 284 [ phmmer_variation] ... ok.
exercise 285 [ mapali] ... ok.
exercise 286 [ fragments] ... ok.
exercise 287 [ nonresidues] ... ok.
exercise 288 [ opt-annotation] ... ok.
exercise 289 [ dup-names] ... ok.
exercise 290 [ mapali-again] ... ok.
exercise 291 [ delete-corruption] ... ok.
exercise 292 [ msa-integrity] ... ok.
exercise 293 [ hmmemit-consensus] ... ok.
exercise 294 [ hmmconvert] ... ok.
exercise 295 [ stdin_pipes] ... ok.
exercise 296 [ nhmmer_generic] ... ok.
exercise 297 [ hmmpgmd_ga] ... ok.
exercise 298 [ rewind] ... ok.
exercise 299 [ hmmpgmd_shard_ga] ... ok.
exercise 300 [ bad-fasta] ... ok.
exercise 301 [ brute-itest] ... ok.
exercise 302 [ hmmpress-itest] ... ok.
exercise 303 [ h39] ... ok.
exercise 304 [ h45] ... ok.
exercise 305 [ h50] ... ok.
exercise 306 [ h82] ... ok.
exercise 307 [ iss159] ... ok.
All 307 exercises at level <= 2 passed.
System information:
Fri Sep 22 21:48:20 UTC 2023
Linux bm-wb-04 4.9.0-0.bpo.4-armmp #1 SMP Debian 4.9.51-1~bpo8+1 (2017-10-17) armv7l GNU/Linux
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/testsuite'
make[2]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
if tail -n 6 debian/test_log | head -n 1 | grep -q FAILED ; then false ; fi
make[1]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
dh_auto_install
make -j4 install DESTDIR=/<<BUILDDIR>>/hmmer-3.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
SUBDIR easel
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
SUBDIR miniapps
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/easel'
SUBDIR src
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
SUBDIR impl_neon
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src'
SUBDIR profmark
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/profmark'
if [ ! -d /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/tmp/usr/bin ]; then /usr/bin/install -c -d /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/tmp/usr/bin; fi
if [ ! -d /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1 ]; then /usr/bin/install -c -d /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1; fi
make -C src install
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src'
for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \
/usr/bin/install -c -m 0755 $file /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/tmp/usr/bin/ ;\
done
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/src'
make -C documentation install
make[3]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/documentation'
make -C man install
make[4]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/documentation/man'
for file in hmmer hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \
/usr/bin/install -c -m 0664 $file.man /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1/${file}.1 ;\
done
make[4]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/documentation/man'
make[3]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg/documentation'
make[2]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
mkdir -p /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer/usr/lib/arm-linux-gnueabihf/hmmer/
cp src/hmmc2 /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer/usr/lib/arm-linux-gnueabihf/hmmer/
make[1]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
dh_installexamples
mkdir -p /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl
find src/ -maxdepth 1 -name "*_utest" -exec cp \{\} /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/ \;
find src/impl_sse -name "*_utest" -exec cp \{\} /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl \;
cp src/itest_brute /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src
cp src/hmmpress.itest.pl /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src
cp -aR testsuite /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples
find easel -name "*.o" -delete
cp -aR easel /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples
cp -aR tutorial /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples
find /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name 'Makefile' | xargs sed -i "s^/<<BUILDDIR>>/hmmer-3.4+dfsg^.^g"
find /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "esltmp*" -delete
make[1]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
dh_compress -Xtutorial/
make[1]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
dh_fixperms
find debian -name .dropbox.attr -delete
find debian -name "*.fa" -executable -exec chmod -x \{\} \;
find /<<BUILDDIR>>/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "*.man" -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/hmmer-3.4+dfsg'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'hmmer-examples' in '../hmmer-examples_3.4+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../hmmer_3.4+dfsg-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../hmmer_3.4+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-09-22T21:52:14Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
hmmer_3.4+dfsg-2_armhf.changes:
-------------------------------
Format: 1.8
Date: Fri, 15 Sep 2023 10:08:46 +0200
Source: hmmer
Binary: hmmer-examples
Architecture: armhf
Version: 3.4+dfsg-2
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
hmmer-examples - profile hidden Markov models for protein sequence analysis (examp
Changes:
hmmer (3.4+dfsg-2) unstable; urgency=medium
.
* Team upload.
* d/control: hmmer-examples contains arch-specific test programs, mark
as "Architecture: any".
Checksums-Sha1:
3a92d765ada45d9d88497d8c159e706a1662bd9a 30896248 hmmer-examples_3.4+dfsg-2_armhf.deb
e6230dcbd7a8f39bfdd66f4581be8398f754c310 5314 hmmer_3.4+dfsg-2_armhf.buildinfo
Checksums-Sha256:
16344c5d18e12d08868cff1f17aeeb2752bf39c80577144c91563ac2cc53ebb7 30896248 hmmer-examples_3.4+dfsg-2_armhf.deb
7833a16ca824001c4806476890d1dd8a908d313c463341d755e7e641b0c46ee9 5314 hmmer_3.4+dfsg-2_armhf.buildinfo
Files:
5d9d789a4df295ae600775c5ceb01c68 30896248 doc optional hmmer-examples_3.4+dfsg-2_armhf.deb
90949080ae6c788e73356c0d65a0b7a1 5314 science optional hmmer_3.4+dfsg-2_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
hmmer-examples_3.4+dfsg-2_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 30896248 bytes: control archive=18140 bytes.
864 bytes, 22 lines control
68181 bytes, 741 lines md5sums
Package: hmmer-examples
Source: hmmer
Version: 3.4+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 31887
Depends: libperl4-corelibs-perl
Section: doc
Priority: optional
Multi-Arch: foreign
Homepage: http://hmmer.org/
Description: profile hidden Markov models for protein sequence analysis (examples)
HMMER is an implementation of profile hidden Markov model methods for
sensitive searches of biological sequence databases using multiple sequence
alignments as queries.
.
Given a multiple sequence alignment as input, HMMER builds a statistical
model called a "hidden Markov model" which can then be used as a query into
a sequence database to find (and/or align) additional homologues of the
sequence family.
.
This package contains example files to test the hmmer package.
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 331464
Build-Time: 9292
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 387
Job: hmmer_3.4+dfsg-2
Machine Architecture: armhf
Package: hmmer
Package-Time: 9741
Source-Version: 3.4+dfsg-2
Space: 331464
Status: successful
Version: 3.4+dfsg-2
--------------------------------------------------------------------------------
Finished at 2023-09-22T21:52:14Z
Build needed 02:42:21, 331464k disc space