Raspbian Package Auto-Building

Build log for gromacs (4.6.5-1+b1) on armhf

gromacs4.6.5-1+b1armhf → 2014-05-09 03:04:16

sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testbuildd.raspbian.org

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║ gromacs 4.6.5-1+b1 (armhf)                                 09 May 2014 03:01 ║
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Package: gromacs
Version: 4.6.5-1+b1
Source Version: 4.6.5-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/gromacs-R2Jq_J/gromacs-4.6.5' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/gromacs-R2Jq_J' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-24660fb2-8851-4700-8980-b972f192f435' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Err http://172.17.0.1 jessie-staging InRelease
  
Err http://172.17.0.1 jessie-staging Release.gpg
  Unable to connect to 172.17.0.1:http:
Reading package lists...
W: Failed to fetch http://172.17.0.1/private/dists/jessie-staging/InRelease  

W: Failed to fetch http://172.17.0.1/private/dists/jessie-staging/Release.gpg  Unable to connect to 172.17.0.1:http:

W: Some index files failed to download. They have been ignored, or old ones used instead.

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Check APT
─────────

Checking available source versions...

Download source files with APT
──────────────────────────────

Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'gromacs' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debichem/unstable/gromacs/
Need to get 11.0 MB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main gromacs 4.6.5-1 (dsc) [2356 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main gromacs 4.6.5-1 (tar) [11.0 MB]
Get:3 http://172.17.0.1/private/ jessie-staging/main gromacs 4.6.5-1 (diff) [34.0 kB]
Fetched 11.0 MB in 5s (2094 kB/s)
Download complete and in download only mode

Check arch
──────────

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-9cr_tP/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/810 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12374 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.0), libfftw3-dev, libmpich-dev (>= 3), libopenmpi-dev (>= 1.2.4-5), libx11-dev, zlib1g-dev, libgsl0-dev, libxml2-dev, libblas-dev, liblapack-dev, cmake, hardening-wrapper, chrpath
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 7.0.0), libfftw3-dev, libmpich-dev (>= 3), libopenmpi-dev (>= 1.2.4-5), libx11-dev, zlib1g-dev, libgsl0-dev, libxml2-dev, libblas-dev, liblapack-dev, cmake, hardening-wrapper, chrpath
dpkg-deb: building package `sbuild-build-depends-gromacs-dummy' in `/«BUILDDIR»/resolver-yz0bI5/apt_archive/sbuild-build-depends-gromacs-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install gromacs build dependencies (apt-based resolver)                      │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  adduser bsdmainutils chrpath cmake cmake-data debhelper file gettext
  gettext-base gfortran gfortran-4.8 groff-base hardening-wrapper
  intltool-debian libarchive13 libasprintf0c2 libblas-dev libblas3 libcr0
  libcroco3 libcurl3 libexpat1 libffi6 libfftw3-bin libfftw3-dev
  libfftw3-double3 libfftw3-single3 libgcrypt11 libgfortran-4.8-dev
  libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgsl0-dev libgsl0ldbl
  libgssapi-krb5-2 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libidn11
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
  libldap-2.4-2 libltdl7 liblzo2-2 libmagic1 libmpich-dev libmpich10
  libnettle4 libopenmpi-dev libopenmpi1.6 libp11-kit0 libpci-dev libpci3
  libpipeline1 libpthread-stubs0-dev libsasl2-2 libsasl2-modules-db libsctp1
  libssh2-1 libssl1.0.0 libtasn1-6 libtorque2 libunistring0 libx11-6
  libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev
  libxdmcp6 libxml2 libxml2-dev man-db openmpi-common po-debconf
  x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools
  xtrans-dev zlib1g-dev
Suggested packages:
  liblocale-gettext-perl wamerican wordlist whois vacation codeblocks eclipse
  dh-make gettext-doc gfortran-doc gfortran-4.8-doc libgfortran3-dbg groff
  lrzip blcr-dkms libfftw3-doc rng-tools gsl-ref-psdoc gsl-doc-pdf
  gsl-doc-info gsl-ref-html krb5-doc krb5-user libhwloc-contrib-plugins
  libxcb-doc pkg-config less www-browser libmail-box-perl
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  ca-certificates libglib2.0-data shared-mime-info libhwloc-plugins
  krb5-locales mpich libsasl2-modules lksctp-tools libx11-doc xml-core
  libmail-sendmail-perl
The following NEW packages will be installed:
  adduser bsdmainutils chrpath cmake cmake-data debhelper file gettext
  gettext-base gfortran gfortran-4.8 groff-base hardening-wrapper
  intltool-debian libarchive13 libasprintf0c2 libblas-dev libblas3 libcr0
  libcroco3 libcurl3 libexpat1 libffi6 libfftw3-bin libfftw3-dev
  libfftw3-double3 libfftw3-single3 libgcrypt11 libgfortran-4.8-dev
  libgfortran3 libglib2.0-0 libgnutls26 libgpg-error0 libgsl0-dev libgsl0ldbl
  libgssapi-krb5-2 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libidn11
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
  libldap-2.4-2 libltdl7 liblzo2-2 libmagic1 libmpich-dev libmpich10
  libnettle4 libopenmpi-dev libopenmpi1.6 libp11-kit0 libpci-dev libpci3
  libpipeline1 libpthread-stubs0-dev libsasl2-2 libsasl2-modules-db libsctp1
  libssh2-1 libssl1.0.0 libtasn1-6 libtorque2 libunistring0 libx11-6
  libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev
  libxdmcp6 libxml2 libxml2-dev man-db openmpi-common po-debconf
  sbuild-build-depends-gromacs-dummy x11proto-core-dev x11proto-input-dev
  x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded.
Need to get 38.9 MB/38.9 MB of archives.
After this operation, 119 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
  libpipeline1 libssl1.0.0 groff-base bsdmainutils man-db libasprintf0c2
  libgpg-error0 libgcrypt11 libffi6 libp11-kit0 libtasn1-6 libgnutls26
  libkeyutils1 libkrb5support0 libk5crypto3 libkrb5-3 libgssapi-krb5-2
  libidn11 libsasl2-modules-db libsasl2-2 libldap-2.4-2 libmagic1 libpci3
  libxml2 liblzo2-2 libnettle4 libarchive13 libglib2.0-0 libcroco3 libssh2-1
  libcurl3 libexpat1 libfftw3-double3 libfftw3-single3 libgfortran3 libltdl7
  libsctp1 libunistring0 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6
  libhwloc5 libmpich10 adduser file gettext-base chrpath cmake-data cmake
  gettext intltool-debian po-debconf debhelper libgfortran-4.8-dev
  gfortran-4.8 gfortran hardening-wrapper libblas3 libblas-dev libcr0
  libfftw3-bin libfftw3-dev libgsl0ldbl libgsl0-dev liblapack3 liblapack-dev
  zlib1g-dev libpci-dev libpthread-stubs0-dev libtorque2 xorg-sgml-doctools
  x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev
  xtrans-dev libxcb1-dev libx11-dev libxml2-dev libhwloc-dev libibverbs1
  libibverbs-dev libmpich-dev libopenmpi1.6 openmpi-common libopenmpi-dev
E: There are problems and -y was used without --force-yes
apt-get failed.
Package installation failed
Not removing build depends: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
E: Package build dependencies not satisfied; skipping

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 0
Build-Time: 0
Distribution: jessie-staging
Fail-Stage: install-deps
Host Architecture: armhf
Install-Time: 0
Job: gromacs_4.6.5-1
Machine Architecture: armhf
Package: gromacs
Package-Time: 0
Source-Version: 4.6.5-1
Space: 0
Status: failed
Version: 4.6.5-1+b1
────────────────────────────────────────────────────────────────────────────────
Finished at 20140509-0301
Build needed 00:00:00, 0k disc space