gromacs →
2018-2 →
armhf → 2018-01-26 13:42:13
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| gromacs 2018-2 (armhf) Fri, 26 Jan 2018 12:36:46 +0000 |
+==============================================================================+
Package: gromacs
Version: 2018-2
Source Version: 2018-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-f6aa9f07-60f2-4cf1-88c7-9833cae29faf' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.5 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.3 MB]
Fetched 22.8 MB in 8s (2747 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'gromacs' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debichem/packages/gromacs.git
Please use:
git clone https://anonscm.debian.org/git/debichem/packages/gromacs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 29.9 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main gromacs 2018-2 (dsc) [2605 B]
Get:2 http://172.17.0.1/private buster-staging/main gromacs 2018-2 (tar) [29.9 MB]
Get:3 http://172.17.0.1/private buster-staging/main gromacs 2018-2 (diff) [34.7 kB]
Fetched 29.9 MB in 3s (9131 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/gromacs-xPr7VH/gromacs-2018' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gromacs-xPr7VH' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Blc6O1/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Blc6O1/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Blc6O1/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ Packages [429 B]
Fetched 2105 B in 0s (10.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (69.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15307 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: chrpath, cmake, debhelper (>= 10), libblas-dev, libboost-dev, libfftw3-dev, liblapack-dev, libmpich-dev (>= 3.0.4-6), libopenmpi-dev (>= 1.10.2-7), libtinyxml-dev, libx11-dev, mpich, openmpi-bin, zlib1g-dev
Filtered Build-Depends: chrpath, cmake, debhelper (>= 10), libblas-dev, libboost-dev, libfftw3-dev, liblapack-dev, libmpich-dev (>= 3.0.4-6), libopenmpi-dev (>= 1.10.2-7), libtinyxml-dev, libx11-dev, mpich, openmpi-bin, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-gromacs-dummy' in '/<<BUILDDIR>>/resolver-Blc6O1/apt_archive/sbuild-build-depends-gromacs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-gromacs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ Sources [581 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ Packages [659 B]
Fetched 2573 B in 0s (13.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install gromacs build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils chrpath cmake
cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base gfortran gfortran-7 groff-base hwloc-nox ibverbs-providers
intltool-debian libarchive-zip-perl libarchive13 libblas-dev libblas3
libboost-dev libboost1.62-dev libbsd0 libcr0 libcroco3 libcurl3 libexpat1
libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3
libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0
libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev
libibverbs1 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 libltdl-dev libltdl7 liblzo2-2
libmagic-mgc libmagic1 libmpich-dev libmpich12 libnghttp2-14 libnl-3-200
libnl-route-3-200 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1
libpsl5 libpthread-stubs0-dev librhash0 librtmp1 libsigsegv2 libssh2-1
libssl1.0.2 libtimedate-perl libtinyxml-dev libtinyxml2.6.2v5 libtool libuv1
libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev
libxdmcp-dev libxdmcp6 libxml2 m4 man-db mpich ocl-icd-libopencl1
openmpi-bin openmpi-common po-debconf x11proto-core-dev x11proto-input-dev
x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation ninja-build dh-make dwz gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-7-doc libgfortran4-dbg
libcoarrays-dev groff lrzip liblapack-doc libboost-doc libboost1.62-doc
libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev
libboost-coroutine1.62-dev libboost-date-time1.62-dev
libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-filesystem1.62-dev libboost-graph1.62-dev
libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-program-options1.62-dev libboost-python1.62-dev
libboost-random1.62-dev libboost-regex1.62-dev
libboost-serialization1.62-dev libboost-signals1.62-dev
libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
libboost1.62-tools-dev libmpfrc++-dev libntl-dev blcr-dkms libfftw3-doc
krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils
libtinyxml-doc gcj-jdk libxcb-doc m4-doc less www-browser apparmor blcr-util
mpich-doc opencl-icd libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libx11-doc libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils chrpath cmake
cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base gfortran gfortran-7 groff-base hwloc-nox ibverbs-providers
intltool-debian libarchive-zip-perl libarchive13 libblas-dev libblas3
libboost-dev libboost1.62-dev libbsd0 libcr0 libcroco3 libcurl3 libexpat1
libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3
libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0
libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev
libibverbs1 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 libltdl-dev libltdl7 liblzo2-2
libmagic-mgc libmagic1 libmpich-dev libmpich12 libnghttp2-14 libnl-3-200
libnl-route-3-200 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1
libpsl5 libpthread-stubs0-dev librhash0 librtmp1 libsigsegv2 libssh2-1
libssl1.0.2 libtimedate-perl libtinyxml-dev libtinyxml2.6.2v5 libtool libuv1
libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev
libxdmcp-dev libxdmcp6 libxml2 m4 man-db mpich ocl-icd-libopencl1
openmpi-bin openmpi-common po-debconf sbuild-build-depends-gromacs-dummy
x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools
xtrans-dev zlib1g-dev
0 upgraded, 103 newly installed, 0 to remove and 29 not upgraded.
Need to get 53.1 MB/53.6 MB of archives.
After this operation, 286 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Blc6O1/apt_archive ./ sbuild-build-depends-gromacs-dummy 0.invalid.0 [948 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.7-1 [96.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-4 [1012 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.9.5-1 [1285 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-6.1 [602 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-3.1 [251 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.2 [12.1 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.2-2 [58.6 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.2-2 [116 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.2-2 [263 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.2-2 [133 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.29.0-1 [70.5 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.19.1-4 [43.2 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2n-1 [887 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.57.0-1 [275 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.4-3 [94.7 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.18.0-3 [86.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.9.5-1 [2439 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20171216.1 [75.9 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf chrpath armhf 0.16-2 [15.4 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 15 [16.2 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.3-1 [2651 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.3 [1005 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.2.0-19 [191 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.2.0-19 [232 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.2.0-19 [5449 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.2.0-1d1 [1352 B]
Get:51 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2 [386 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libhwloc5 armhf 1.11.8-1+rpi1 [85.6 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf hwloc-nox armhf 1.11.8-1+rpi1 [145 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libnl-3-200 armhf 3.2.27-2 [53.7 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libnl-route-3-200 armhf 3.2.27-2 [113 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libibverbs1 armhf 16.1-2 [38.8 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf ibverbs-providers armhf 16.1-2 [19.2 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.7.1-4 [103 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.7.1-4 [112 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-5 [7004 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:62 http://172.17.0.1/private buster-staging/main armhf libcr0 armhf 0.8.5-2.3 [29.9 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libfftw3-double3 armhf 3.3.7-1 [430 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libfftw3-single3 armhf 3.3.7-1 [626 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libfftw3-bin armhf 3.3.7-1 [43.6 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libfftw3-dev armhf 3.3.7-1 [1050 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2 [159 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libhwloc-dev armhf 1.11.8-1+rpi1 [140 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libpciaccess0 armhf 0.13.4-1 [47.4 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-1 [35.4 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libhwloc-plugins armhf 1.11.8-1+rpi1 [15.1 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libibverbs-dev armhf 16.1-2 [90.9 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.7.1-4 [1508 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.7.1-4 [1564 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:76 http://172.17.0.1/private buster-staging/main armhf libtinyxml2.6.2v5 armhf 2.6.2-4 [32.6 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libtinyxml-dev armhf 2.6.2-4 [48.9 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.4-3 [290 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf x11proto-core-dev all 7.0.31-1 [728 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf x11proto-input-dev all 2.3.2-1 [158 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf x11proto-kb-dev all 1.0.7-1 [233 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf xtrans-dev all 1.3.5-1 [100 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libxcb1-dev armhf 1.12-1 [165 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libx11-dev armhf 2:1.6.4-3 [753 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libmpich12 armhf 3.3~a2-4 [832 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libmpich-dev armhf 3.3~a2-4 [1101 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libopenmpi2 armhf 2.1.1-7+rpi1 [1744 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf openmpi-common all 2.1.1-7+rpi1 [154 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libopenmpi-dev armhf 2.1.1-7+rpi1 [1019 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf mpich armhf 3.3~a2-4 [191 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf openmpi-bin armhf 2.1.1-7+rpi1 [187 kB]
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Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up x11proto-kb-dev (1.0.7-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libfftw3-double3:armhf (3.3.7-1) ...
Setting up libicu57:armhf (57.1-8) ...
Setting up libbsd0:armhf (0.8.7-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-6.1) ...
Setting up libmagic-mgc (1:5.32-1) ...
Setting up libmagic1:armhf (1:5.32-1) ...
Setting up librhash0 (1.3.4-3) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up libssl1.0.2:armhf (1.0.2n-1) ...
Setting up xtrans-dev (1.3.5-1) ...
Setting up libblas3:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libssh2-1:armhf (1.8.0-1) ...
Setting up openmpi-common (2.1.1-7+rpi1) ...
Processing triggers for libc-bin (2.26-2+rpi1) ...
Setting up autotools-dev (20171216.1) ...
Setting up libltdl7:armhf (2.4.6-2) ...
Setting up libgfortran-7-dev:armhf (7.2.0-19) ...
Setting up libpciaccess0:armhf (0.13.4-1) ...
Setting up libfftw3-single3:armhf (3.3.7-1) ...
Setting up gfortran-7 (7.2.0-19) ...
Setting up libboost-dev:armhf (1.62.0.1+b8) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up ocl-icd-libopencl1:armhf (2.2.12-1) ...
Setting up libkeyutils1:armhf (1.5.9-9.2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libnl-3-200:armhf (3.2.27-2) ...
Setting up libx11-data (2:1.6.4-3) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-4) ...
Setting up liblzo2-2:armhf (2.08-1.2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.040-1) ...
Setting up libjsoncpp1:armhf (1.7.4-3) ...
Setting up gfortran (4:7.2.0-1d1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libfftw3-bin (3.3.7-1) ...
Setting up libmpich12:armhf (3.3~a2-4) ...
Setting up x11proto-core-dev (7.0.31-1) ...
Setting up libltdl-dev:armhf (2.4.6-2) ...
Setting up gettext (0.19.8.1-4) ...
Setting up libblas-dev:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libarchive13:armhf (3.2.2-3.1) ...
Setting up liblapack3:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxau-dev:armhf (1:1.0.8-1+b2) ...
Setting up libnl-route-3-200:armhf (3.2.27-2) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-1) ...
Setting up libhwloc5:armhf (1.11.8-1+rpi1) ...
Setting up libkrb5support0:armhf (1.15.2-2) ...
Setting up libmpich-dev (3.3~a2-4) ...
update-alternatives: using /usr/include/mpich to provide /usr/include/mpi (mpi) in auto mode
Setting up libhwloc-plugins (1.11.8-1+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libxdmcp-dev:armhf (1:1.1.2-3) ...
Setting up libfftw3-dev:armhf (3.3.7-1) ...
Setting up automake (1:1.15.1-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-4) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxcb1:armhf (1.12-1) ...
Setting up x11proto-input-dev (2.3.2-1) ...
Setting up liblapack-dev:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-2) ...
Setting up hwloc-nox (1.11.8-1+rpi1) ...
Setting up libibverbs1:armhf (16.1-2) ...
Setting up mpich (3.3~a2-4) ...
update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode
Setting up libk5crypto3:armhf (1.15.2-2) ...
Setting up po-debconf (1.0.20) ...
Setting up libhwloc-dev:armhf (1.11.8-1+rpi1) ...
Setting up libx11-6:armhf (2:1.6.4-3) ...
Setting up ibverbs-providers:armhf (16.1-2) ...
Setting up libxcb1-dev:armhf (1.12-1) ...
Setting up libopenmpi2:armhf (2.1.1-7+rpi1) ...
Setting up libkrb5-3:armhf (1.15.2-2) ...
Setting up libx11-dev:armhf (2:1.6.4-3) ...
Setting up libibverbs-dev:armhf (16.1-2) ...
Setting up libopenmpi-dev (2.1.1-7+rpi1) ...
update-alternatives: renaming libmpi.so slave link from /usr/lib/libmpi.so to /usr/lib/arm-linux-gnueabihf/libmpi.so
update-alternatives: renaming libmpi++.so slave link from /usr/lib/libmpi++.so to /usr/lib/arm-linux-gnueabihf/libmpi++.so
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up openmpi-bin (2.1.1-7+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
Setting up libgssapi-krb5-2:armhf (1.15.2-2) ...
Setting up libcurl3:armhf (7.57.0-1) ...
Setting up cmake (3.9.5-1) ...
Setting up dh-strip-nondeterminism (0.040-1) ...
Setting up debhelper (11.1.3) ...
Setting up dh-autoreconf (15) ...
Setting up sbuild-build-depends-gromacs-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.26-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29.1-13+rpi1 dpkg-dev_1.19.0.4 g++-7_7.2.0-19 gcc-7_7.2.0-19 libc6-dev_2.26-2+rpi1 libstdc++-7-dev_7.2.0-19 libstdc++6_7.2.0-19 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha6 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20171216.1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-13+rpi1 binutils-arm-linux-gnueabihf_2.29.1-13+rpi1 binutils-common_2.29.1-13+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.30.2-0.1 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 chrpath_0.16-2 cmake_3.9.5-1 cmake-data_3.9.5-1 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-19 dash_0.5.8-2.5 debconf_1.5.65 debhelper_11.1.3 debianutils_4.8.4 dh-autoreconf_15 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.4-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.4 dpkg-dev_1.19.0.4 e2fslibs_1.43.8-2 e2fsprogs_1.43.8-2 e2fsprogs-l10n_1.43.8-2 fakeroot_1.22-2 fdisk_2.30.2-0.1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1d1 g++-7_7.2.0-19 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-19 gcc-7-base_7.2.0-19 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gfortran_4:7.2.0-1d1 gfortran-7_7.2.0-19 gnupg_2.2.4-1 gnupg-agent_2.2.4-1 gnupg-l10n_2.2.4-1 gnupg-utils_2.2.4-1 gpg_2.2.4-1 gpg-agent_2.2.4-1 gpg-wks-client_2.2.4-1 gpg-wks-server_2.2.4-1 gpgconf_2.2.4-1 gpgsm_2.2.4-1 gpgv_2.2.4-1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 hwloc-nox_1.11.8-1+rpi1 ibverbs-providers_16.1-2 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.1-4 libapt-pkg5.0_1.6~alpha6 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libasan4_7.2.0-19 libassuan0_2.5.1-1 libatomic1_7.2.0-19 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.29.1-13+rpi1 libblas-dev_3.7.1-4 libblas3_3.7.1-4 libblkid1_2.30.2-0.1 libboost-dev_1.62.0.1+b8 libboost1.62-dev_1.62.0+dfsg-5 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-2+rpi1 libc-dev-bin_2.26-2+rpi1 libc6_2.26-2+rpi1 libc6-dev_2.26-2+rpi1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-19 libcilkrts5_7.2.0-19 libcomerr2_1.43.8-2 libcr0_0.8.5-2.3 libcroco3_0.6.12-2 libcryptsetup4_2:1.7.5-1 libcurl3_7.57.0-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1 libdebconfclient0_0.237 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.4 libdrm-common_2.4.89-1+rpi1 libdrm2_2.4.89-1+rpi1 libexpat1_2.2.5-3 libfakeroot_1.22-2 libfdisk1_2.30.2-0.1 libffi6_3.2.1-8 libfftw3-bin_3.3.7-1 libfftw3-dev_3.3.7-1 libfftw3-double3_3.3.7-1 libfftw3-single3_3.3.7-1 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-19 libgcc1_1:7.2.0-19 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libgfortran-7-dev_7.2.0-19 libgfortran4_7.2.0-19 libglib2.0-0_2.54.3-1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.16-1 libgomp1_7.2.0-19 libgpg-error0_1.27-5 libgssapi-krb5-2_1.15.2-2 libhogweed4_3.4-1 libhwloc-dev_1.11.8-1+rpi1 libhwloc-plugins_1.11.8-1+rpi1 libhwloc5_1.11.8-1+rpi1 libibverbs-dev_16.1-2 libibverbs1_16.1-2 libicu57_57.1-8 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1 libip4tc0_1.6.1-2+b1 libisl15_0.18-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-11+rpi1 libkmod2_24-1 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 liblapack-dev_3.7.1-4 liblapack3_3.7.1-4 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.2-0.1 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libmpich-dev_3.3~a2-4 libmpich12_3.3~a2-4 libncurses5_6.0+20171125-1 libncursesw5_6.0+20171125-1 libnettle6_3.4-1 libnghttp2-14_1.29.0-1 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnpth0_1.5-3 libopenmpi-dev_2.1.1-7+rpi1 libopenmpi2_2.1.1-7+rpi1 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpciaccess0_0.13.4-1 libpcre3_2:8.39-8 libperl5.24_5.24.1-7 libperl5.26_5.26.1-3 libpipeline1_1.5.0-1 libplymouth4_0.9.3-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3 libpsl5_0.19.1-4 libpthread-stubs0-dev_0.3-4 libreadline7_7.0-3 librhash0_1.3.4-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsmartcols1_2.30.2-0.1 libsqlite3-0_3.21.0-1 libss2_1.43.8-2 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2n-1 libssl1.1_1.1.0g-2 libstdc++-7-dev_7.2.0-19 libstdc++6_7.2.0-19 libsystemd0_236-2 libtasn1-6_4.12-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20171125-1 libtinyxml-dev_2.6.2-4 libtinyxml2.6.2v5_2.6.2-4 libtool_2.4.6-2 libubsan0_7.2.0-19 libudev1_236-2 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1 libuv1_1.18.0-3 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libx11-dev_2:1.6.4-3 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb1_1.12-1 libxcb1-dev_1.12-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxml2_2.9.4+dfsg1-6.1 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-4 mawk_1.3.3-17 mount_2.30.2-0.1 mpich_3.3~a2-4 multiarch-support_2.26-2+rpi1 nano_2.9.1-1 ncurses-base_6.0+20171125-1 ncurses-bin_6.0+20171125-1 ocl-icd-libopencl1_2.2.12-1 openmpi-bin_2.1.1-7+rpi1 openmpi-common_2.1.1-7+rpi1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-3 perl-base_5.26.1-3 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-3 pinentry-curses_1.0.0-3 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gromacs-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 systemd_236-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017c-1 udev_236-2 util-linux_2.30.2-0.1 x11proto-core-dev_7.0.31-1 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Jan 20 21:09:04 2018 UTC
gpgv: using RSA key 843E5FA61E6063389876D2E5EE4AFD69EC65108F
gpgv: issuer "nbreen@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./gromacs_2018-2.dsc
dpkg-source: info: extracting gromacs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking gromacs_2018.orig.tar.gz
dpkg-source: info: unpacking gromacs_2018-2.debian.tar.xz
dpkg-source: info: applying readme.patch
dpkg-source: info: applying copyright-file.patch
dpkg-source: info: applying reproducible-builds.patch
dpkg-source: info: applying doxygen.patch
dpkg-source: info: applying disable-cpuinfotest.patch
dpkg-source: info: applying hurd-disable-numa-test.patch
dpkg-source: info: applying gtest-death-test.patch
dpkg-source: info: applying mdrun-test-timeout.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-f6aa9f07-60f2-4cf1-88c7-9833cae29faf
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package gromacs
dpkg-buildpackage: info: source version 2018-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build gromacs-2018
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh_testdir
dh_testroot
rm -rf build docs/doxygen/*.pyc
dh_clean build-basic build-mpich build-openmpi build-manual configure-stamp \
debian/gromacs-mpich.README.Debian debian/gromacs-openmpi.README.Debian
debian/rules build-arch
dh_testdir
(mkdir -p build/basic; cd build/basic; cmake /<<PKGBUILDDIR>> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=OFF -DGMX_X11=ON -DBUILD_SHARED_LIBS=ON)
-- The C compiler identification is GNU 7.2.0
-- The CXX compiler identification is GNU 7.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Performing Test CXXFLAG_STD_CXX0X
-- Performing Test CXXFLAG_STD_CXX0X - Success
-- Performing Test CXX11_SUPPORTED
-- Performing Test CXX11_SUPPORTED - Success
-- Performing Test CXX11_STDLIB_PRESENT
-- Performing Test CXX11_STDLIB_PRESENT - Success
-- Looking for NVIDIA GPUs present in the system
-- Could not detect NVIDIA GPUs
-- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Performing Test CFLAGS_EXCESS_PREC
-- Performing Test CFLAGS_EXCESS_PREC - Success
-- Performing Test CFLAGS_COPT
-- Performing Test CFLAGS_COPT - Success
-- Performing Test CFLAGS_NOINLINE
-- Performing Test CFLAGS_NOINLINE - Success
-- Performing Test CXXFLAGS_EXCESS_PREC
-- Performing Test CXXFLAGS_EXCESS_PREC - Success
-- Performing Test CXXFLAGS_COPT
-- Performing Test CXXFLAGS_COPT - Success
-- Performing Test CXXFLAGS_NOINLINE
-- Performing Test CXXFLAGS_NOINLINE - Success
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file pwd.h
-- Looking for include file pwd.h - found
-- Looking for include file dirent.h
-- Looking for include file dirent.h - found
-- Looking for include file time.h
-- Looking for include file time.h - found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - found
-- Looking for include file io.h
-- Looking for include file io.h - not found
-- Looking for include file sched.h
-- Looking for include file sched.h - found
-- Looking for include file regex.h
-- Looking for include file regex.h - found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for nice
-- Looking for nice - found
-- Looking for fsync
-- Looking for fsync - found
-- Looking for _fileno
-- Looking for _fileno - not found
-- Looking for fileno
-- Looking for fileno - found
-- Looking for _commit
-- Looking for _commit - not found
-- Looking for sigaction
-- Looking for sigaction - found
-- Performing Test HAVE_BUILTIN_CLZ
-- Performing Test HAVE_BUILTIN_CLZ - Success
-- Performing Test HAVE_BUILTIN_CLZLL
-- Performing Test HAVE_BUILTIN_CLZLL - Success
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Looking for feenableexcept in m
-- Looking for feenableexcept in m - found
-- Checking for sched.h GNU affinity API
-- Performing Test sched_affinity_compile
-- Performing Test sched_affinity_compile - Success
-- Looking for include file mm_malloc.h
-- Looking for include file mm_malloc.h - not found
-- Looking for include file malloc.h
-- Looking for include file malloc.h - found
-- Looking for include file xmmintrin.h
-- Looking for include file xmmintrin.h - not found
-- Checking for _mm_malloc()
-- Checking for _mm_malloc() - not supported
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for memalign
-- Looking for memalign - not found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- hwloc version: 1.11.8
-- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.8", minimum required is "1.5")
-- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so
-- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Found X11: /usr/lib/arm-linux-gnueabihf/libX11.so
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Atomic operations found
-- Performing Test PTHREAD_SETAFFINITY
-- Performing Test PTHREAD_SETAFFINITY - Success
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.8")
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found
-- Checking for GCC x86 inline asm
-- Checking for GCC x86 inline asm - not supported
-- Setting build time - 2018-01-20 19:31:44
-- Setting build host - Linux armv8l
-- Detected build CPU vendor - ARM
-- Detected build CPU brand - ARMv8 Processor rev 1 (v8l)
-- Detected build CPU family - 8
-- Detected build CPU model - 0
-- Detected build CPU stepping - 1
-- Detected build CPU features - neon
-- Disabling RDTSCP support
-- Checking for 64-bit off_t
-- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64
-- Checking for fseeko/ftello
-- Checking for fseeko/ftello - present
-- Checking for SIGUSR1
-- Checking for SIGUSR1 - found
-- Checking for pipe support
-- Looking for C++ include regex
-- Looking for C++ include regex - found
-- Checking for system XDR support
-- Checking for system XDR support - present
-- SIMD instructions disabled
-- Performing Test _callconv___vectorcall
-- Performing Test _callconv___vectorcall - Failed
-- Performing Test _callconv___regcall
-- Performing Test _callconv___regcall - Failed
-- Performing Test _callconv_
-- Performing Test _callconv_ - Success
-- pkg-config could not detect fftw3f, trying generic detection
-- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found
-- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found
-- Using external FFT library - FFTW3
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Checking for dlopen
-- Performing Test HAVE_DLOPEN
-- Performing Test HAVE_DLOPEN - Success
-- Checking for dlopen - found
-- Using dynamic plugins (e.g VMD-supported file formats)
-- Checking for suitable VMD version
-- VMD plugins not found. Path to VMD can be set with VMDDIR.
-- Using default binary suffix: ""
-- Using default library suffix: ""
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7")
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7")
-- Performing Test HAS_NO_UNUSED_VARIABLE
-- Performing Test HAS_NO_UNUSED_VARIABLE - Success
-- Performing Test HAS_NO_UNUSED
-- Performing Test HAS_NO_UNUSED - Success
-- Check if the system is big endian
-- Searching 16 bit integer
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Configuring done
-- Generating done
-- Build files have been written to: /<<PKGBUILDDIR>>/build/basic
(mkdir -p build/basic-dp; cd build/basic-dp; cmake /<<PKGBUILDDIR>> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=OFF -DGMX_X11=ON -DBUILD_SHARED_LIBS=ON -DGMX_DOUBLE=ON)
-- The C compiler identification is GNU 7.2.0
-- The CXX compiler identification is GNU 7.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Performing Test CXXFLAG_STD_CXX0X
-- Performing Test CXXFLAG_STD_CXX0X - Success
-- Performing Test CXX11_SUPPORTED
-- Performing Test CXX11_SUPPORTED - Success
-- Performing Test CXX11_STDLIB_PRESENT
-- Performing Test CXX11_STDLIB_PRESENT - Success
CMake Warning at cmake/gmxManageGPU.cmake:57 (message):
GPU acceleration is not available in double precision, disabled!
Call Stack (most recent call first):
CMakeLists.txt:225 (include)
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Performing Test CFLAGS_EXCESS_PREC
-- Performing Test CFLAGS_EXCESS_PREC - Success
-- Performing Test CFLAGS_COPT
-- Performing Test CFLAGS_COPT - Success
-- Performing Test CFLAGS_NOINLINE
-- Performing Test CFLAGS_NOINLINE - Success
-- Performing Test CXXFLAGS_EXCESS_PREC
-- Performing Test CXXFLAGS_EXCESS_PREC - Success
-- Performing Test CXXFLAGS_COPT
-- Performing Test CXXFLAGS_COPT - Success
-- Performing Test CXXFLAGS_NOINLINE
-- Performing Test CXXFLAGS_NOINLINE - Success
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file pwd.h
-- Looking for include file pwd.h - found
-- Looking for include file dirent.h
-- Looking for include file dirent.h - found
-- Looking for include file time.h
-- Looking for include file time.h - found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - found
-- Looking for include file io.h
-- Looking for include file io.h - not found
-- Looking for include file sched.h
-- Looking for include file sched.h - found
-- Looking for include file regex.h
-- Looking for include file regex.h - found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for nice
-- Looking for nice - found
-- Looking for fsync
-- Looking for fsync - found
-- Looking for _fileno
-- Looking for _fileno - not found
-- Looking for fileno
-- Looking for fileno - found
-- Looking for _commit
-- Looking for _commit - not found
-- Looking for sigaction
-- Looking for sigaction - found
-- Performing Test HAVE_BUILTIN_CLZ
-- Performing Test HAVE_BUILTIN_CLZ - Success
-- Performing Test HAVE_BUILTIN_CLZLL
-- Performing Test HAVE_BUILTIN_CLZLL - Success
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Looking for feenableexcept in m
-- Looking for feenableexcept in m - found
-- Checking for sched.h GNU affinity API
-- Performing Test sched_affinity_compile
-- Performing Test sched_affinity_compile - Success
-- Looking for include file mm_malloc.h
-- Looking for include file mm_malloc.h - not found
-- Looking for include file malloc.h
-- Looking for include file malloc.h - found
-- Looking for include file xmmintrin.h
-- Looking for include file xmmintrin.h - not found
-- Checking for _mm_malloc()
-- Checking for _mm_malloc() - not supported
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for memalign
-- Looking for memalign - not found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- hwloc version: 1.11.8
-- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.8", minimum required is "1.5")
-- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so
-- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Found X11: /usr/lib/arm-linux-gnueabihf/libX11.so
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Atomic operations found
-- Performing Test PTHREAD_SETAFFINITY
-- Performing Test PTHREAD_SETAFFINITY - Success
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.8")
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found
-- Checking for GCC x86 inline asm
-- Checking for GCC x86 inline asm - not supported
-- Setting build time - 2018-01-20 19:31:44
-- Setting build host - Linux armv8l
-- Detected build CPU vendor - ARM
-- Detected build CPU brand - ARMv8 Processor rev 1 (v8l)
-- Detected build CPU family - 8
-- Detected build CPU model - 0
-- Detected build CPU stepping - 1
-- Detected build CPU features - neon
-- Disabling RDTSCP support
-- Checking for 64-bit off_t
-- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64
-- Checking for fseeko/ftello
-- Checking for fseeko/ftello - present
-- Checking for SIGUSR1
-- Checking for SIGUSR1 - found
-- Checking for pipe support
-- Looking for C++ include regex
-- Looking for C++ include regex - found
-- Checking for system XDR support
-- Checking for system XDR support - present
-- SIMD instructions disabled
-- Performing Test _callconv___vectorcall
-- Performing Test _callconv___vectorcall - Failed
-- Performing Test _callconv___regcall
-- Performing Test _callconv___regcall - Failed
-- Performing Test _callconv_
-- Performing Test _callconv_ - Success
-- pkg-config could not detect fftw3, trying generic detection
-- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so - found
-- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Using external FFT library - FFTW3
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Checking for dlopen
-- Performing Test HAVE_DLOPEN
-- Performing Test HAVE_DLOPEN - Success
-- Checking for dlopen - found
-- Using dynamic plugins (e.g VMD-supported file formats)
-- Checking for suitable VMD version
-- VMD plugins not found. Path to VMD can be set with VMDDIR.
-- Using default binary suffix: "_d"
-- Using default library suffix: "_d"
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7")
-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7")
-- Performing Test HAS_NO_UNUSED_VARIABLE
-- Performing Test HAS_NO_UNUSED_VARIABLE - Success
-- Performing Test HAS_NO_UNUSED
-- Performing Test HAS_NO_UNUSED - Success
-- Check if the system is big endian
-- Searching 16 bit integer
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Configuring done
-- Generating done
-- Build files have been written to: /<<PKGBUILDDIR>>/build/basic-dp
(mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich CXX=/usr/bin/mpicxx.mpich cmake \
/<<PKGBUILDDIR>> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DMPIEXEC="/usr/bin/mpiexec.mpich" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich")
-- The C compiler identification is GNU 7.2.0
-- The CXX compiler identification is GNU 7.2.0
-- Check for working C compiler: /usr/bin/mpicc.mpich
-- Check for working C compiler: /usr/bin/mpicc.mpich -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/mpicxx.mpich
-- Check for working CXX compiler: /usr/bin/mpicxx.mpich -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Performing Test CXXFLAG_STD_CXX0X
-- Performing Test CXXFLAG_STD_CXX0X - Success
-- Performing Test CXX11_SUPPORTED
-- Performing Test CXX11_SUPPORTED - Success
-- Performing Test CXX11_STDLIB_PRESENT
-- Performing Test CXX11_STDLIB_PRESENT - Success
-- Looking for NVIDIA GPUs present in the system
-- Could not detect NVIDIA GPUs
-- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Performing Test CFLAGS_EXCESS_PREC
-- Performing Test CFLAGS_EXCESS_PREC - Success
-- Performing Test CFLAGS_COPT
-- Performing Test CFLAGS_COPT - Success
-- Performing Test CFLAGS_NOINLINE
-- Performing Test CFLAGS_NOINLINE - Success
-- Performing Test CXXFLAGS_EXCESS_PREC
-- Performing Test CXXFLAGS_EXCESS_PREC - Success
-- Performing Test CXXFLAGS_COPT
-- Performing Test CXXFLAGS_COPT - Success
-- Performing Test CXXFLAGS_NOINLINE
-- Performing Test CXXFLAGS_NOINLINE - Success
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file pwd.h
-- Looking for include file pwd.h - found
-- Looking for include file dirent.h
-- Looking for include file dirent.h - found
-- Looking for include file time.h
-- Looking for include file time.h - found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - found
-- Looking for include file io.h
-- Looking for include file io.h - not found
-- Looking for include file sched.h
-- Looking for include file sched.h - found
-- Looking for include file regex.h
-- Looking for include file regex.h - found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for nice
-- Looking for nice - found
-- Looking for fsync
-- Looking for fsync - found
-- Looking for _fileno
-- Looking for _fileno - not found
-- Looking for fileno
-- Looking for fileno - found
-- Looking for _commit
-- Looking for _commit - not found
-- Looking for sigaction
-- Looking for sigaction - found
-- Performing Test HAVE_BUILTIN_CLZ
-- Performing Test HAVE_BUILTIN_CLZ - Success
-- Performing Test HAVE_BUILTIN_CLZLL
-- Performing Test HAVE_BUILTIN_CLZLL - Success
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Looking for feenableexcept in m
-- Looking for feenableexcept in m - found
-- Checking for sched.h GNU affinity API
-- Performing Test sched_affinity_compile
-- Performing Test sched_affinity_compile - Success
-- Looking for include file mm_malloc.h
-- Looking for include file mm_malloc.h - not found
-- Looking for include file malloc.h
-- Looking for include file malloc.h - found
-- Looking for include file xmmintrin.h
-- Looking for include file xmmintrin.h - not found
-- Checking for _mm_malloc()
-- Checking for _mm_malloc() - not supported
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for memalign
-- Looking for memalign - not found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- MPI is not compatible with thread-MPI. Disabling thread-MPI.
-- Checking for MPI_IN_PLACE
-- Performing Test MPI_IN_PLACE_COMPILE_OK
-- Performing Test MPI_IN_PLACE_COMPILE_OK - Success
-- Checking for MPI_IN_PLACE - yes
-- Defaulting to building static libraries
-- hwloc version: 1.11.8
-- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.8", minimum required is "1.5")
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Atomic operations found
-- Performing Test PTHREAD_SETAFFINITY
-- Performing Test PTHREAD_SETAFFINITY - Success
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.8")
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found
-- Checking for GCC x86 inline asm
-- Checking for GCC x86 inline asm - not supported
-- Setting build time - 2018-01-20 19:31:44
-- Setting build host - Linux armv8l
-- Detected build CPU vendor - ARM
-- Detected build CPU brand - ARMv8 Processor rev 1 (v8l)
-- Detected build CPU family - 8
-- Detected build CPU model - 0
-- Detected build CPU stepping - 1
-- Detected build CPU features - neon
-- Disabling RDTSCP support
-- Checking for 64-bit off_t
-- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64
-- Checking for fseeko/ftello
-- Checking for fseeko/ftello - present
-- Checking for SIGUSR1
-- Checking for SIGUSR1 - found
-- Checking for pipe support
-- Looking for C++ include regex
-- Looking for C++ include regex - found
-- Checking for system XDR support
-- Checking for system XDR support - present
-- SIMD instructions disabled
-- Performing Test _callconv___vectorcall
-- Performing Test _callconv___vectorcall - Failed
-- Performing Test _callconv___regcall
-- Performing Test _callconv___regcall - Failed
-- Performing Test _callconv_
-- Performing Test _callconv_ - Success
-- pkg-config could not detect fftw3f, trying generic detection
-- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found
-- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found
-- Using external FFT library - FFTW3
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Checking for dlopen
-- Performing Test HAVE_DLOPEN
-- Performing Test HAVE_DLOPEN - Success
-- Checking for dlopen - found
-- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.)
-- Not using dynamic plugins (e.g VMD-supported file formats)
-- Using manually set binary suffix: "_mpi.mpich"
-- Using manually set library suffix: "_mpi.mpich"
-- Performing Test HAS_NO_UNUSED_VARIABLE
-- Performing Test HAS_NO_UNUSED_VARIABLE - Success
-- Performing Test HAS_NO_UNUSED
-- Performing Test HAS_NO_UNUSED - Success
-- Check if the system is big endian
-- Searching 16 bit integer
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Configuring done
-- Generating done
-- Build files have been written to: /<<PKGBUILDDIR>>/build/mpich
(mkdir -p build/mpich-dp; cd build/mpich-dp; CC=/usr/bin/mpicc.mpich CXX=/usr/bin/mpicxx.mpich cmake \
/<<PKGBUILDDIR>> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DMPIEXEC="/usr/bin/mpiexec.mpich" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.mpich" -DGMX_LIBS_SUFFIX="_mpi_d.mpich")
-- The C compiler identification is GNU 7.2.0
-- The CXX compiler identification is GNU 7.2.0
-- Check for working C compiler: /usr/bin/mpicc.mpich
-- Check for working C compiler: /usr/bin/mpicc.mpich -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/mpicxx.mpich
-- Check for working CXX compiler: /usr/bin/mpicxx.mpich -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Performing Test CXXFLAG_STD_CXX0X
-- Performing Test CXXFLAG_STD_CXX0X - Success
-- Performing Test CXX11_SUPPORTED
-- Performing Test CXX11_SUPPORTED - Success
-- Performing Test CXX11_STDLIB_PRESENT
-- Performing Test CXX11_STDLIB_PRESENT - Success
CMake Warning at cmake/gmxManageGPU.cmake:57 (message):
GPU acceleration is not available in double precision, disabled!
Call Stack (most recent call first):
CMakeLists.txt:225 (include)
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Performing Test CFLAGS_EXCESS_PREC
-- Performing Test CFLAGS_EXCESS_PREC - Success
-- Performing Test CFLAGS_COPT
-- Performing Test CFLAGS_COPT - Success
-- Performing Test CFLAGS_NOINLINE
-- Performing Test CFLAGS_NOINLINE - Success
-- Performing Test CXXFLAGS_EXCESS_PREC
-- Performing Test CXXFLAGS_EXCESS_PREC - Success
-- Performing Test CXXFLAGS_COPT
-- Performing Test CXXFLAGS_COPT - Success
-- Performing Test CXXFLAGS_NOINLINE
-- Performing Test CXXFLAGS_NOINLINE - Success
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file pwd.h
-- Looking for include file pwd.h - found
-- Looking for include file dirent.h
-- Looking for include file dirent.h - found
-- Looking for include file time.h
-- Looking for include file time.h - found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - found
-- Looking for include file io.h
-- Looking for include file io.h - not found
-- Looking for include file sched.h
-- Looking for include file sched.h - found
-- Looking for include file regex.h
-- Looking for include file regex.h - found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for nice
-- Looking for nice - found
-- Looking for fsync
-- Looking for fsync - found
-- Looking for _fileno
-- Looking for _fileno - not found
-- Looking for fileno
-- Looking for fileno - found
-- Looking for _commit
-- Looking for _commit - not found
-- Looking for sigaction
-- Looking for sigaction - found
-- Performing Test HAVE_BUILTIN_CLZ
-- Performing Test HAVE_BUILTIN_CLZ - Success
-- Performing Test HAVE_BUILTIN_CLZLL
-- Performing Test HAVE_BUILTIN_CLZLL - Success
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Looking for feenableexcept in m
-- Looking for feenableexcept in m - found
-- Checking for sched.h GNU affinity API
-- Performing Test sched_affinity_compile
-- Performing Test sched_affinity_compile - Success
-- Looking for include file mm_malloc.h
-- Looking for include file mm_malloc.h - not found
-- Looking for include file malloc.h
-- Looking for include file malloc.h - found
-- Looking for include file xmmintrin.h
-- Looking for include file xmmintrin.h - not found
-- Checking for _mm_malloc()
-- Checking for _mm_malloc() - not supported
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for memalign
-- Looking for memalign - not found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- MPI is not compatible with thread-MPI. Disabling thread-MPI.
-- Checking for MPI_IN_PLACE
-- Performing Test MPI_IN_PLACE_COMPILE_OK
-- Performing Test MPI_IN_PLACE_COMPILE_OK - Success
-- Checking for MPI_IN_PLACE - yes
-- Defaulting to building static libraries
-- hwloc version: 1.11.8
-- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.8", minimum required is "1.5")
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Atomic operations found
-- Performing Test PTHREAD_SETAFFINITY
-- Performing Test PTHREAD_SETAFFINITY - Success
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.8")
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found
-- Checking for GCC x86 inline asm
-- Checking for GCC x86 inline asm - not supported
-- Setting build time - 2018-01-20 19:31:44
-- Setting build host - Linux armv8l
-- Detected build CPU vendor - ARM
-- Detected build CPU brand - ARMv8 Processor rev 1 (v8l)
-- Detected build CPU family - 8
-- Detected build CPU model - 0
-- Detected build CPU stepping - 1
-- Detected build CPU features - neon
-- Disabling RDTSCP support
-- Checking for 64-bit off_t
-- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64
-- Checking for fseeko/ftello
-- Checking for fseeko/ftello - present
-- Checking for SIGUSR1
-- Checking for SIGUSR1 - found
-- Checking for pipe support
-- Looking for C++ include regex
-- Looking for C++ include regex - found
-- Checking for system XDR support
-- Checking for system XDR support - present
-- SIMD instructions disabled
-- Performing Test _callconv___vectorcall
-- Performing Test _callconv___vectorcall - Failed
-- Performing Test _callconv___regcall
-- Performing Test _callconv___regcall - Failed
-- Performing Test _callconv_
-- Performing Test _callconv_ - Success
-- pkg-config could not detect fftw3, trying generic detection
-- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so - found
-- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Using external FFT library - FFTW3
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Checking for dlopen
-- Performing Test HAVE_DLOPEN
-- Performing Test HAVE_DLOPEN - Success
-- Checking for dlopen - found
-- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.)
-- Not using dynamic plugins (e.g VMD-supported file formats)
-- Using manually set binary suffix: "_mpi_d.mpich"
-- Using manually set library suffix: "_mpi_d.mpich"
-- Performing Test HAS_NO_UNUSED_VARIABLE
-- Performing Test HAS_NO_UNUSED_VARIABLE - Success
-- Performing Test HAS_NO_UNUSED
-- Performing Test HAS_NO_UNUSED - Success
-- Check if the system is big endian
-- Searching 16 bit integer
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Configuring done
-- Generating done
-- Build files have been written to: /<<PKGBUILDDIR>>/build/mpich-dp
(mkdir -p build/openmpi; cd build/openmpi; CC=/usr/bin/mpicc.openmpi CXX=/usr/bin/mpicxx.openmpi cmake \
/<<PKGBUILDDIR>> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DCMAKE_EXE_LINKER_FLAGS="-L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DMPIEXEC="/usr/bin/mpiexec.openmpi" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_BINARY_SUFFIX="_mpi.openmpi" -DGMX_LIBS_SUFFIX="_mpi.openmpi")
-- The C compiler identification is GNU 7.2.0
-- The CXX compiler identification is GNU 7.2.0
-- Check for working C compiler: /usr/bin/mpicc.openmpi
-- Check for working C compiler: /usr/bin/mpicc.openmpi -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/mpicxx.openmpi
-- Check for working CXX compiler: /usr/bin/mpicxx.openmpi -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Performing Test CXXFLAG_STD_CXX0X
-- Performing Test CXXFLAG_STD_CXX0X - Success
-- Performing Test CXX11_SUPPORTED
-- Performing Test CXX11_SUPPORTED - Success
-- Performing Test CXX11_STDLIB_PRESENT
-- Performing Test CXX11_STDLIB_PRESENT - Success
-- Looking for NVIDIA GPUs present in the system
-- Could not detect NVIDIA GPUs
-- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Performing Test CFLAGS_EXCESS_PREC
-- Performing Test CFLAGS_EXCESS_PREC - Success
-- Performing Test CFLAGS_COPT
-- Performing Test CFLAGS_COPT - Success
-- Performing Test CFLAGS_NOINLINE
-- Performing Test CFLAGS_NOINLINE - Success
-- Performing Test CXXFLAGS_EXCESS_PREC
-- Performing Test CXXFLAGS_EXCESS_PREC - Success
-- Performing Test CXXFLAGS_COPT
-- Performing Test CXXFLAGS_COPT - Success
-- Performing Test CXXFLAGS_NOINLINE
-- Performing Test CXXFLAGS_NOINLINE - Success
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file pwd.h
-- Looking for include file pwd.h - found
-- Looking for include file dirent.h
-- Looking for include file dirent.h - found
-- Looking for include file time.h
-- Looking for include file time.h - found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - found
-- Looking for include file io.h
-- Looking for include file io.h - not found
-- Looking for include file sched.h
-- Looking for include file sched.h - found
-- Looking for include file regex.h
-- Looking for include file regex.h - found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for nice
-- Looking for nice - found
-- Looking for fsync
-- Looking for fsync - found
-- Looking for _fileno
-- Looking for _fileno - not found
-- Looking for fileno
-- Looking for fileno - found
-- Looking for _commit
-- Looking for _commit - not found
-- Looking for sigaction
-- Looking for sigaction - found
-- Performing Test HAVE_BUILTIN_CLZ
-- Performing Test HAVE_BUILTIN_CLZ - Success
-- Performing Test HAVE_BUILTIN_CLZLL
-- Performing Test HAVE_BUILTIN_CLZLL - Success
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Looking for feenableexcept in m
-- Looking for feenableexcept in m - found
-- Checking for sched.h GNU affinity API
-- Performing Test sched_affinity_compile
-- Performing Test sched_affinity_compile - Success
-- Looking for include file mm_malloc.h
-- Looking for include file mm_malloc.h - not found
-- Looking for include file malloc.h
-- Looking for include file malloc.h - found
-- Looking for include file xmmintrin.h
-- Looking for include file xmmintrin.h - not found
-- Checking for _mm_malloc()
-- Checking for _mm_malloc() - not supported
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for memalign
-- Looking for memalign - not found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- MPI is not compatible with thread-MPI. Disabling thread-MPI.
-- Checking for MPI_IN_PLACE
-- Performing Test MPI_IN_PLACE_COMPILE_OK
-- Performing Test MPI_IN_PLACE_COMPILE_OK - Success
-- Checking for MPI_IN_PLACE - yes
-- Defaulting to building static libraries
-- hwloc version: 1.11.8
-- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.8", minimum required is "1.5")
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Atomic operations found
-- Performing Test PTHREAD_SETAFFINITY
-- Performing Test PTHREAD_SETAFFINITY - Success
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.8")
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found
-- Checking for GCC x86 inline asm
-- Checking for GCC x86 inline asm - not supported
-- Setting build time - 2018-01-20 19:31:44
-- Setting build host - Linux armv8l
-- Detected build CPU vendor - ARM
-- Detected build CPU brand - ARMv8 Processor rev 1 (v8l)
-- Detected build CPU family - 8
-- Detected build CPU model - 0
-- Detected build CPU stepping - 1
-- Detected build CPU features - neon
-- Disabling RDTSCP support
-- Checking for 64-bit off_t
-- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64
-- Checking for fseeko/ftello
-- Checking for fseeko/ftello - present
-- Checking for SIGUSR1
-- Checking for SIGUSR1 - found
-- Checking for pipe support
-- Looking for C++ include regex
-- Looking for C++ include regex - found
-- Checking for system XDR support
-- Checking for system XDR support - present
-- SIMD instructions disabled
-- Performing Test _callconv___vectorcall
-- Performing Test _callconv___vectorcall - Failed
-- Performing Test _callconv___regcall
-- Performing Test _callconv___regcall - Failed
-- Performing Test _callconv_
-- Performing Test _callconv_ - Success
-- pkg-config could not detect fftw3f, trying generic detection
-- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found
-- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found
-- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so
-- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found
-- Using external FFT library - FFTW3
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Checking for dlopen
-- Performing Test HAVE_DLOPEN
-- Performing Test HAVE_DLOPEN - Success
-- Checking for dlopen - found
-- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.)
-- Not using dynamic plugins (e.g VMD-supported file formats)
-- Using manually set binary suffix: "_mpi.openmpi"
-- Using manually set library suffix: "_mpi.openmpi"
-- Performing Test HAS_NO_UNUSED_VARIABLE
-- Performing Test HAS_NO_UNUSED_VARIABLE - Success
-- Performing Test HAS_NO_UNUSED
-- Performing Test HAS_NO_UNUSED - Success
-- Check if the system is big endian
-- Searching 16 bit integer
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Configuring done
-- Generating done
-- Build files have been written to: /<<PKGBUILDDIR>>/build/openmpi
(mkdir -p build/openmpi-dp; cd build/openmpi-dp; CC=/usr/bin/mpicc.openmpi CXX=/usr/bin/mpicxx.openmpi cmake \
/<<PKGBUILDDIR>> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DCMAKE_EXE_LINKER_FLAGS="-L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DMPIEXEC="/usr/bin/mpiexec.openmpi" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.openmpi" -DGMX_LIBS_SUFFIX="_mpi_d.openmpi")
-- The C compiler identification is GNU 7.2.0
-- The CXX compiler identification is GNU 7.2.0
-- Check for working C compiler: /usr/bin/mpicc.openmpi
-- Check for working C compiler: /usr/bin/mpicc.openmpi -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/mpicxx.openmpi
-- Check for working CXX compiler: /usr/bin/mpicxx.openmpi -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Performing Test CXXFLAG_STD_CXX0X
-- Performing Test CXXFLAG_STD_CXX0X - Success
-- Performing Test CXX11_SUPPORTED
-- Performing Test CXX11_SUPPORTED - Success
-- Performing Test CXX11_STDLIB_PRESENT
-- Performing Test CXX11_STDLIB_PRESENT - Success
CMake Warning at cmake/gmxManageGPU.cmake:57 (message):
GPU acceleration is not available in double precision, disabled!
Call Stack (most recent call first):
CMakeLists.txt:225 (include)
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Performing Test CFLAGS_EXCESS_PREC
-- Performing Test CFLAGS_EXCESS_PREC - Success
-- Performing Test CFLAGS_COPT
-- Performing Test CFLAGS_COPT - Success
-- Performing Test CFLAGS_NOINLINE
-- Performing Test CFLAGS_NOINLINE - Success
-- Performing Test CXXFLAGS_EXCESS_PREC
-- Performing Test CXXFLAGS_EXCESS_PREC - Success
-- Performing Test CXXFLAGS_COPT
-- Performing Test CXXFLAGS_COPT - Success
-- Performing Test CXXFLAGS_NOINLINE
-- Performing Test CXXFLAGS_NOINLINE - Success
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file pwd.h
-- Looking for include file pwd.h - found
-- Looking for include file dirent.h
-- Looking for include file dirent.h - found
-- Looking for include file time.h
-- Looking for include file time.h - found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - found
-- Looking for include file io.h
-- Looking for include file io.h - not found
-- Looking for include file sched.h
-- Looking for include file sched.h - found
-- Looking for include file regex.h
-- Looking for include file regex.h - found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for nice
-- Looking for nice - found
-- Looking for fsync
-- Looking for fsync - found
-- Looking for _fileno
-- Looking for _fileno - not found
-- Looking for fileno
-- Looking for fileno - found
-- Looking for _commit
-- Looking for _commit - not found
-- Looking for sigaction
-- Looking for sigaction - found
-- Performing Test HAVE_BUILTIN_CLZ
-- Performing Test HAVE_BUILTIN_CLZ - Success
-- Performing Test HAVE_BUILTIN_CLZLL
-- Performing Test HAVE_BUILTIN_CLZLL - Success
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Looking for feenableexcept in m
-- Looking for feenableexcept in m - found
-- Checking for sched.h GNU affinity API
-- Performing Test sched_affinity_compile
-- Performing Test sched_affinity_compile - Success
-- Looking for include file mm_malloc.h
-- Looking for include file mm_malloc.h - not found
-- Looking for include file malloc.h
-- Looking for include file malloc.h - found
-- Looking for include file xmmintrin.h
-- Looking for include file xmmintrin.h - not found
-- Checking for _mm_malloc()
-- Checking for _mm_malloc() - not supported
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for memalign
-- Looking for memalign - not found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- MPI is not compatible with thread-MPI. Disabling thread-MPI.
-- Checking for MPI_IN_PLACE
-- Performing Test MPI_IN_PLACE_COMPILE_OK
-- Performing Test MPI_IN_PLACE_COMPILE_OK - Success
-- Checking for MPI_IN_PLACE - yes
-- Defaulting to building static libraries
-- hwloc version: 1.11.8
-- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.8", minimum required is "1.5")
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Atomic operations found
-- Performing Test PTHREAD_SETAFFINITY
-- Performing Test PTHREAD_SETAFFINITY - Success
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.8")
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so
-- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found
-- Checking for GCC x86 inline asm
-- Checking for GCC x86 inline asm - not supported
-- Setting build time - 2018-01-20 19:31:44
-- Setting build host - Linux armv8l
-- Detected build CPU vendor - ARM
-- Detected build CPU brand - ARMv8 Processor rev 1 (v8l)
-- Detected build CPU family - 8
-- Detected build CPU model - 0
-- Detected build CPU stepping - 1
-- Detected build CPU features - neon
-- Disabling RDTSCP support
-- Checking for 64-bit off_t
-- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64
-- Checking for fseeko/ftello
-- Checking for fseeko/ftello - present
-- Checking for SIGUSR1
-- Checking for SIGUSR1 - found
-- Checking for pipe support
-- Looking for C++ include regex
-- Looking for C++ include regex - found
-- Checking for system XDR support
-- Checking for system XDR support - present
-- SIMD instructions disabled
-- Performing Test _callconv___vectorcall
-- Performing Test _callconv___vectorcall - Failed
-- Performing Test _callconv___regcall
-- Performing Test _callconv___regcall - Failed
-- Performing Test _callconv_
-- Performing Test _callconv_ - Success
-- pkg-config could not detect fftw3, trying generic detection
-- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so - found
-- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found
-- Using external FFT library - FFTW3
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Checking for dlopen
-- Performing Test HAVE_DLOPEN
-- Performing Test HAVE_DLOPEN - Success
-- Checking for dlopen - found
-- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.)
-- Not using dynamic plugins (e.g VMD-supported file formats)
-- Using manually set binary suffix: "_mpi_d.openmpi"
-- Using manually set library suffix: "_mpi_d.openmpi"
-- Performing Test HAS_NO_UNUSED_VARIABLE
-- Performing Test HAS_NO_UNUSED_VARIABLE - Success
-- Performing Test HAS_NO_UNUSED
-- Performing Test HAS_NO_UNUSED - Success
-- Check if the system is big endian
-- Searching 16 bit integer
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Configuring done
-- Generating done
-- Build files have been written to: /<<PKGBUILDDIR>>/build/openmpi-dp
touch configure-stamp
dh_testdir
/usr/bin/make -j4 -C build/basic
make[1]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/build/basic --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/basic/CMakeFiles /<<PKGBUILDDIR>>/build/basic/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend
/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend
/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend
/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/programs /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/programs /<<PKGBUILDDIR>>/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs /<<PKGBUILDDIR>>/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/programs /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/programs /<<PKGBUILDDIR>>/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/programs/mdrun/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color=
Scanning dependencies of target tng_io_obj
Scanning dependencies of target mdrun_test_objlib
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build
/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build
Scanning dependencies of target view_objlib
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/bwlzh.c
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/energyreader.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/3dview.cpp
Scanning dependencies of target mdrun_objlib
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cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/bwt.c
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/buttons.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/coder.c
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/dialogs.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/dict.c
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/fgrid.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/fixpoint.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/huffman.c
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/filter.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/huffmem.c
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/logo.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/lz77.c
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/manager.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/merge_sort.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/mtf.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/rle.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/tng_compress.c
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/molps.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/mdruncomparisonfixture.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/nleg.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/nmol.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/mdrun.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/popup.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/membed.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/pulldown.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/vals16.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/warnmalloc.c
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/view.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/widemuldiv.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/xtc2.c
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/x11.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/moduletest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/xdlg.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/xdlghi.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/xtc3.c
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/repl_ex.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/xdlgitem.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/terminationhelper.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/xmb.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/xutil.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/lib/tng_io.c
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/lib/md5.c
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<<PKGBUILDDIR>>/build/basic/VersionInfo.cmake -D VERSION_CMAKEIN=/<<PKGBUILDDIR>>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<<PKGBUILDDIR>>/cmake/gmxConfigureVersionInfo.cmake
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs /<<PKGBUILDDIR>>/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color=
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/bonded.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/disre.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/listed-forces.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/listed-internal.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/manage-threading.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/orires.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/pairs.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/do_fit.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/functions.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/invertmatrix.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/units.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/utilities.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/veccompare.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/vecdump.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/df_history.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/iforceprovider.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/inputrec.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/md_enums.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/observableshistory.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpformat.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpmanager.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.h:59,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.h:59,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In function 'void init_gtc_state(t_state*, int, int, int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helptopic.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpwritercontext.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/rstparser.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/boxutilities.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/mshift.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc-simd.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/rmpbc.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/seed.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tabulatednormaldistribution.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/forcetable.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef<const double>, double, const std::pair<float, float>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:210:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp: In constructor 'gmx::CubicSplineTable::CubicSplineTable(std::initializer_list<gmx::NumericalSplineTableInput>, const std::pair<float, float>&, real)':
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
CubicSplineTable::CubicSplineTable(std::initializer_list<NumericalSplineTableInput> numericalInputList,
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef<const double>, double, const std::pair<float, float>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:287:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef<const double>, gmx::ArrayRef<const double>, double, const std::pair<float, float>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
throwUnlessDerivativeIsConsistentWithFunction(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'std::vector<double> gmx::internal::vectorSecondDerivative(gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:306:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
vectorSecondDerivative(ArrayRef<const double> f, double spacing)
^~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/cyclecounter.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp: In constructor 'gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list<gmx::NumericalSplineTableInput>, const std::pair<float, float>&, real)':
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
QuadraticSplineTable::QuadraticSplineTable(std::initializer_list<NumericalSplineTableInput> numericalInputList,
^~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/wallcycle.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
std::vector<double> thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing));
^
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/walltime_accounting.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atomprop.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atoms.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atomsbuilder.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/block.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/idef.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/ifunc.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/index.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/invblock.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tngio.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/trrio.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/trxio.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/vmdio.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/warninp.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/writeps.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xdrd.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xtcio.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xvgr.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /<<PKGBUILDDIR>>/src/external/vmd_molfile/vmddlopen.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/swap/swapcoords.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/essentialdynamics/edsam.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pull.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pull_rotation.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pullutil.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/awh.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.h:53,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector<gmx::DimParams>&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector<gmx::GridAxis>&, int)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp: In member function 'void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:314:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void Bias::updateForceCorrelationGrid(gmx::ArrayRef<const double> probWeightNeighbor,
^~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:335:45: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:68:0:
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp: In member function 'gmx::ArrayRef<const double> gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const gmx_multisim_t*, double, gmx_int64_t, gmx_int64_t, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:141:39: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
updateForceCorrelationGrid(probWeightNeighbor, t);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tempForce_, biasForce_);
~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:169:19: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
potential =
~~~~~~~~~~^
state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex);
^
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biassharing.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/awh.h:69,
from /<<PKGBUILDDIR>>/src/gromacs/awh/awh.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biaswriter.cpp
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector<int, std::allocator<int> >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator<gmx::BiasCoupledToSystem>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::BiasCoupledToSystem>::iterator {aka __gnu_cxx::__normal_iterator<gmx::BiasCoupledToSystem*, std::vector<gmx::BiasCoupledToSystem> >}' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx::AwhParams&, const string&, pull_t*)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BiasCoupledToSystem*, std::vector<gmx::BiasCoupledToSystem> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef<gmx::PointState>, const gmx::BiasParams&)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:244:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::PointState>' changed in GCC 7.1
void updateTargetDistribution(gmx::ArrayRef<PointState> pointState,
^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector<gmx::DimParams>&, const gmx::Grid&, int, gmx::ArrayRef<double>) const':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:373:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double BiasState::calcUmbrellaForceAndPotential(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::calcConvolvedForce(const std::vector<gmx::DimParams>&, const gmx::Grid&, gmx::ArrayRef<const double>, gmx::ArrayRef<double>, gmx::ArrayRef<double>) const':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::calcConvolvedForce(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:413:38: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
calcUmbrellaForceAndPotential(dimParams, grid, indexNeighbor,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
forceFromNeighbor);
~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::moveUmbrella(const std::vector<gmx::DimParams>&, const gmx::Grid&, gmx::ArrayRef<const double>, gmx::ArrayRef<double>, gmx_int64_t, gmx_int64_t, int)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
double BiasState::moveUmbrella(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:433:40: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:433:40: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:437:98: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
calcUmbrellaForceAndPotential(dimParams, grid, coordState_.umbrellaGridpoint(), newForce);
^
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef<const double>)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1174:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::sampleProbabilityWeights(const Grid &grid,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1229:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::sampleCoordAndPmf(const Grid &grid,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp: In member function 'void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef<const double>, gmx_int64_t, gmx_int64_t, int)':
/<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
CoordState::sampleUmbrellaGridpoint(const Grid &grid,
^~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationgrid.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationhistory.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp: In member function 'void gmx::CorrelationTensor::addData(double, gmx::ArrayRef<const double>, bool, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void CorrelationTensor::addData(double weight,
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::CorrelationBlockData}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator<gmx::CorrelationBlockData>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::CorrelationBlockData>::iterator {aka __gnu_cxx::__normal_iterator<gmx::CorrelationBlockData*, std::vector<gmx::CorrelationBlockData> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::CorrelationTensor::CorrelationTensor(int, int, double)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::CorrelationBlockData*, std::vector<gmx::CorrelationBlockData> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector<gmx::DimParams>&, const gmx::Grid&, const gmx::BiasParams&, const gmx_multisim_t*, double, gmx_int64_t, FILE*, std::vector<int>*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1017:126: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog);
^
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1017:126: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/grid.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/pointstate.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/read-params.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/support.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef<double>, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms,
^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector<gmx::PointState>&, gmx::ArrayRef<double>, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double HistogramSize::newHistogramSize(const BiasParams ¶ms,
^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:239:26: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
newHistogramSize = newHistogramSizeInitialStage(params, t, covered, weightsumCovering, fplog);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:239:26: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/imd/imd.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/dimparams.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.h:60,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::GridAxis}; _Tp = gmx::GridAxis; _Alloc = std::allocator<gmx::GridAxis>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::GridAxis>::iterator {aka __gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function 'void gmx::mapGridToDataGrid(std::vector<int>*, const double* const*, int, const string&, const gmx::Grid&, const string&)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::Grid::Grid(const std::vector<gmx::DimParams>&, const gmx::AwhDimParams*)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/binsearch.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_anaeig.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_keywords.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_permute.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_same.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_simple.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/symrec.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/analysismodule.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/analysissettings.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/runnercommon.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/angle.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/distance.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/pairdist.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/analysismodule.h:49,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/freevolume.h:45,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::analysismodules::{anonymous}::FreeVolume::initAnalysis(const gmx::TrajectoryAnalysisSettings&, const gmx::TopologyInformation&)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/rdf.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/sasa.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/select.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/trajectory.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/hostallocator.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/gpu_utils.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/cpuinfo.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/detecthardware.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/gpu_hw_info.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/hardwaretopology.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/printhardware.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/identifyavx512fmaunits.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/handlerestart.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/mdmodules.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/threadaffinity.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/abstractoption.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/abstractsection.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/behaviorcollection.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/filenameoption.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/filenameoptionmanager.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/options.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsassigner.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsection.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsvisitor.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/timeunitmanager.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/treesupport.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/decidegpuusage.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/findallgputasks.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.h:50,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.h:50,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp:44:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate<double>::ValueList*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/reportgpuusage.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/resourcedivision.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/taskassignment.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/usergpuids.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectory/trajectoryframe.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/errhandler.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/tmpi_malloc.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/atomic.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/lock.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/pthreads.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/system_error.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/alltoall.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/alltoall.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_protocol.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/p2p_protocol.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/barrier.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/barrier.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_send_recv.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/p2p_send_recv.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/bcast.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/bcast.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_wait.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/p2p_wait.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/collective.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/collective.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/profile.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/profile.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/comm.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/comm.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/reduce.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/event.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/event.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce_fast.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/reduce_fast.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/gather.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/gather.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scatter.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/scatter.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/group.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/group.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_init.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/tmpi_init.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/topology.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/topology.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/list.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/list.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/type.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/type.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scan.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/scan.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/numa_malloc.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/numa_malloc.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/once.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/lmfit/lmmin.cpp.o -c /<<PKGBUILDDIR>>/src/external/lmfit/lmmin.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o -c /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/baseversion-gen.c
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libgromacs.so.3 -o ../../lib/libgromacs.so.3.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib/arm-linux-gnueabihf/libhwloc.so -ldl -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so -lpthread -fopenmp -lm /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lpthread -lm
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.3.0.0 ../../lib/libgromacs.so.3 ../../lib/libgromacs.so
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make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/programs /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/programs /<<PKGBUILDDIR>>/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color=
Scanning dependencies of target tng_io_obj
Scanning dependencies of target mdrun_test_objlib
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
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Scanning dependencies of target view_objlib
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/bwlzh.c
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/energyreader.cpp
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make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/3dview.cpp
Scanning dependencies of target mdrun_objlib
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make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/bwt.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/buttons.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/coder.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/dialogs.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/fgrid.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/dict.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/fixpoint.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/huffman.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/filter.cpp
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp: In function 'double gmx::do_md(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)':
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1234:21: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, ir, step, nrnb, wcycle, top, groups,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->box, state->x, &state->hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
f, force_vir, mdatoms, enerd, fcd,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->lambda, graph,
~~~~~~~~~~~~~~~~~~~~~
fr, vsite, mu_tot, t, ed, bBornRadii,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bNS ? GMX_FORCE_NS : 0) | force_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddOpenBalanceRegion, ddCloseBalanceRegion);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1234:21: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1234:21: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1266:26: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
update_coords(fplog, step, ir, mdatoms, state, f, fcd,
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ekind, M, upd, etrtVELOCITY1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cr, constr);
~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1273:35: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
update_constraints(fplog, step, nullptr, ir, mdatoms,
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state, fr->bMolPBC, graph, f,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&top->idef, shake_vir,
~~~~~~~~~~~~~~~~~~~~~~
cr, nrnb, wcycle, upd, constr,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TRUE, bCalcVir);
~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1393:25: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
sum_dhdl(enerd, state->lambda, ir->fepvals);
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1418:33: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ir, state, state_global, observablesHistory,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top_global, fr,
~~~~~~~~~~~~~~~
outf, mdebin, ekind, f,
~~~~~~~~~~~~~~~~~~~~~~~
&nchkpt,
~~~~~~~~
bCPT, bRerunMD, bLastStep,
~~~~~~~~~~~~~~~~~~~~~~~~~~
mdrunOptions.writeConfout,
~~~~~~~~~~~~~~~~~~~~~~~~~~
bSumEkinhOld);
~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1528:35: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
update_constraints(fplog, step, nullptr, ir, mdatoms,
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state, fr->bMolPBC, graph, f,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&top->idef, tmp_vir,
~~~~~~~~~~~~~~~~~~~~
cr, nrnb, wcycle, upd, constr,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TRUE, bCalcVir);
~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1568:30: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
update_coords(fplog, step, ir, mdatoms, state, f, fcd,
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ekind, M, upd, etrtVELOCITY2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cr, constr);
~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1589:26: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
update_coords(fplog, step, ir, mdatoms, state, f, fcd,
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ekind, M, upd, etrtPOSITION, cr, constr);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1593:31: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
update_constraints(fplog, step, &dvdl_constr, ir, mdatoms, state,
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fr->bMolPBC, graph, f,
~~~~~~~~~~~~~~~~~~~~~~
&top->idef, shake_vir,
~~~~~~~~~~~~~~~~~~~~~~
cr, nrnb, wcycle, upd, constr,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FALSE, bCalcVir);
~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1614:30: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
update_coords(fplog, step, ir, mdatoms, state, f, fcd,
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ekind, M, upd, etrtPOSITION, cr, constr);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1623:35: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
update_constraints(fplog, step, nullptr, ir, mdatoms,
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state, fr->bMolPBC, graph, f,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&top->idef, tmp_vir,
~~~~~~~~~~~~~~~~~~~~
cr, nrnb, wcycle, upd, nullptr,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FALSE, bCalcVir);
~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1728:21: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
sum_dhdl(enerd, state->lambda, ir->fepvals);
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/logo.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/huffmem.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/manager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/lz77.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/merge_sort.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/mtf.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/rle.c
/<<PKGBUILDDIR>>/src/programs/view/manager.cpp: In function 'bool ManCallBack(t_x11*, XEvent*, Window, void*)':
/<<PKGBUILDDIR>>/src/programs/view/manager.cpp:371:46: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
put_atoms_in_compact_unitcell(man->molw->ePBC, ecenterDEF, man->box,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
atomsArrayRef);
~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/view/manager.cpp:371:46: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/tng_compress.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/molps.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/nleg.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/mdruncomparisonfixture.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/nmol.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/mdrun.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/popup.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/pulldown.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/membed.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/view.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/vals16.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/warnmalloc.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/widemuldiv.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/xtc2.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/x11.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/xdlg.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/moduletest.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/xdlghi.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/xtc3.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/xdlgitem.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/repl_ex.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/terminationhelper.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/xmb.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /<<PKGBUILDDIR>>/src/programs/view/xutil.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 1%] Built target view_objlib
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/runner.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/lib/tng_io.c
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 1%] Built target mdrun_test_objlib
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/lib/md5.c
/<<PKGBUILDDIR>>/src/programs/mdrun/runner.cpp: In member function 'int gmx::Mdrunner::mdrunner()':
/<<PKGBUILDDIR>>/src/programs/mdrun/runner.cpp:1214:38: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
constructVsitesGlobal(*mtop, globalState->x);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 1%] Built target mdrun_objlib
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 2%] Built target tng_io_obj
/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<<PKGBUILDDIR>>/build/basic-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/<<PKGBUILDDIR>>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<<PKGBUILDDIR>>/cmake/gmxConfigureVersionInfo.cmake
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color=
Scanning dependencies of target libgromacs
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/bonded.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/disre.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/listed-forces.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/listed-internal.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/manage-threading.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/orires.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/pairs.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/position-restraints.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/restcbt.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinehelpcontext.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinehelpmodule.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinehelpwriter.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineinit.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinemodule.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinemodulemanager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineoptionsmodule.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineparser.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineprogramcontext.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/filenm.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/pargs.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/shellcompletions.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/viewit.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/dlbtiming.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_box.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_constraints.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_network.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_setup.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_specatomcomm.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_topology.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_vsite.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/calculate-spline-moduli.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/ewald-utils.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/ewald.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/long-range-correction.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gather.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-grid.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-load-balancing.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = double*; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.cpp:47:
/usr/include/c++/7/bits/stl_vector.h: In function 'void pme_gpu_copy_common_data_from(const gmx_pme_t*)':
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-only.cpp
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp: In function 'void dd_collect_vec(gmx_domdec_t*, const t_state*, gmx::ArrayRef<const gmx::BasicVector<double> >, gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp:1277:6: note: parameter passing for argument of type 'gmx::ArrayRef<const gmx::BasicVector<double> >' changed in GCC 7.1
void dd_collect_vec(gmx_domdec_t *dd,
^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp:1277:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp: In function 'void dd_collect_state(gmx_domdec_t*, const t_state*, t_state*)':
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp:1339:23: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(dd, state_local, state_local->x, globalXRef);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp:1344:23: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(dd, state_local, state_local->v, globalVRef);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp:1349:23: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(dd, state_local, state_local->cg_p, globalCgpRef);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-pp.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-redistribute.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-solve.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-spline-work.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-spread.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/linearalgebra/eigensolver.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/linearalgebra/gmx_arpack.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/linearalgebra/matrix.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/linearalgebra/nrjac.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/linearalgebra/sparsematrix.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/3dtransforms.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/do_fit.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/functions.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/invertmatrix.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/units.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/utilities.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/veccompare.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/df_history.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/iforceprovider.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/inputrec.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/md_enums.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/observableshistory.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpformat.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpmanager.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp: In function 'real (* makeRvecArray(gmx::ArrayRef<const gmx::BasicVector<double> >, unsigned int))[3]':
/<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp:209:7: note: parameter passing for argument of type 'gmx::ArrayRef<const gmx::BasicVector<double> >' changed in GCC 7.1
rvec *makeRvecArray(gmx::ArrayRef<const gmx::RVec> v,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.h:59,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.h:59,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In function 'void init_gtc_state(t_state*, int, int, int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helptopic.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpwritercontext.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/rstparser.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/boxutilities.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/mshift.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc-simd.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/rmpbc.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/seed.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tabulatednormaldistribution.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/forcetable.cpp
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_box(int, const real (*)[3], gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp:1416:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void put_atoms_in_box(int ePBC, const matrix box, gmx::ArrayRef<gmx::RVec> x)
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_triclinic_unitcell(int, const real (*)[3], gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp:1476:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void put_atoms_in_triclinic_unitcell(int ecenter, const matrix box,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_compact_unitcell(int, int, const real (*)[3], gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp:1534:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void put_atoms_in_compact_unitcell(int ePBC, int ecenter, const matrix box,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp: In constructor 'gmx::CubicSplineTable::CubicSplineTable(std::initializer_list<gmx::NumericalSplineTableInput>, const std::pair<double, double>&, real)':
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
CubicSplineTable::CubicSplineTable(std::initializer_list<NumericalSplineTableInput> numericalInputList,
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef<const double>, double, const std::pair<double, double>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:210:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef<const double>, double, const std::pair<double, double>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:287:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef<const double>, gmx::ArrayRef<const double>, double, const std::pair<double, double>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
throwUnlessDerivativeIsConsistentWithFunction(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'std::vector<double> gmx::internal::vectorSecondDerivative(gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:306:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
vectorSecondDerivative(ArrayRef<const double> f, double spacing)
^~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/cyclecounter.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/wallcycle.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/walltime_accounting.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atomprop.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp: In constructor 'gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list<gmx::NumericalSplineTableInput>, const std::pair<double, double>&, real)':
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
QuadraticSplineTable::QuadraticSplineTable(std::initializer_list<NumericalSplineTableInput> numericalInputList,
^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
std::vector<double> thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing));
^
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atoms.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atomsbuilder.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/block.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/idef.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/ifunc.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/index.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/invblock.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/mtop_util.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/residuetypes.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/symtab.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/topology.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/topsort.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/alignedallocator.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/basenetwork.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/g96io.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/gmx_internal_xdr.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/gmxfio-xdr.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/gmxfio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/groio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/libxdrf.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/matio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/md5.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/mtxio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/oenv.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/pdbio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/readinp.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/timecontrol.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tngio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tpxio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/trrio.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/fileio/tngio.cpp:46:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/fileio/tngio.cpp:46:
/usr/include/c++/7/bits/stl_vector.h: In function 'void gmx_tng_add_mtop(gmx_tng_trajectory_t, const gmx_mtop_t*)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/trxio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/vmdio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/warninp.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/writeps.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xdrd.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xtcio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xvgr.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /<<PKGBUILDDIR>>/src/external/vmd_molfile/vmddlopen.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/swap/swapcoords.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/essentialdynamics/edsam.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pull.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pull_rotation.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pullutil.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/awh.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.h:53,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector<gmx::DimParams>&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector<gmx::GridAxis>&, int)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biassharing.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp: In member function 'void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:314:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void Bias::updateForceCorrelationGrid(gmx::ArrayRef<const double> probWeightNeighbor,
^~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:335:45: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:68:0:
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp: In member function 'gmx::ArrayRef<const double> gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const gmx_multisim_t*, double, gmx_int64_t, gmx_int64_t, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:141:39: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
updateForceCorrelationGrid(probWeightNeighbor, t);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tempForce_, biasForce_);
~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:169:19: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
potential =
~~~~~~~~~~^
state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex);
^
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/awh.h:69,
from /<<PKGBUILDDIR>>/src/gromacs/awh/awh.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biaswriter.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector<int, std::allocator<int> >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator<gmx::BiasCoupledToSystem>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::BiasCoupledToSystem>::iterator {aka __gnu_cxx::__normal_iterator<gmx::BiasCoupledToSystem*, std::vector<gmx::BiasCoupledToSystem> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx::AwhParams&, const string&, pull_t*)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BiasCoupledToSystem*, std::vector<gmx::BiasCoupledToSystem> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef<gmx::PointState>, const gmx::BiasParams&)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:244:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::PointState>' changed in GCC 7.1
void updateTargetDistribution(gmx::ArrayRef<PointState> pointState,
^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector<gmx::DimParams>&, const gmx::Grid&, int, gmx::ArrayRef<double>) const':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:373:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double BiasState::calcUmbrellaForceAndPotential(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::calcConvolvedForce(const std::vector<gmx::DimParams>&, const gmx::Grid&, gmx::ArrayRef<const double>, gmx::ArrayRef<double>, gmx::ArrayRef<double>) const':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::calcConvolvedForce(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:413:38: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
calcUmbrellaForceAndPotential(dimParams, grid, indexNeighbor,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
forceFromNeighbor);
~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp: In member function 'void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef<const double>, gmx_int64_t, gmx_int64_t, int)':
/<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
CoordState::sampleUmbrellaGridpoint(const Grid &grid,
^~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::moveUmbrella(const std::vector<gmx::DimParams>&, const gmx::Grid&, gmx::ArrayRef<const double>, gmx::ArrayRef<double>, gmx_int64_t, gmx_int64_t, int)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
double BiasState::moveUmbrella(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:433:40: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:433:40: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:437:98: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
calcUmbrellaForceAndPotential(dimParams, grid, coordState_.umbrellaGridpoint(), newForce);
^
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationgrid.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationhistory.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef<const double>)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1174:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::sampleProbabilityWeights(const Grid &grid,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1229:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::sampleCoordAndPmf(const Grid &grid,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp: In member function 'void gmx::CorrelationTensor::addData(double, gmx::ArrayRef<const double>, bool, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void CorrelationTensor::addData(double weight,
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::CorrelationBlockData}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator<gmx::CorrelationBlockData>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::CorrelationBlockData>::iterator {aka __gnu_cxx::__normal_iterator<gmx::CorrelationBlockData*, std::vector<gmx::CorrelationBlockData> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::CorrelationTensor::CorrelationTensor(int, int, double)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::CorrelationBlockData*, std::vector<gmx::CorrelationBlockData> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/grid.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector<gmx::DimParams>&, const gmx::Grid&, const gmx::BiasParams&, const gmx_multisim_t*, double, gmx_int64_t, FILE*, std::vector<int>*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1017:126: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog);
^
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1017:126: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/pointstate.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/read-params.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef<double>, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms,
^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector<gmx::PointState>&, gmx::ArrayRef<double>, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double HistogramSize::newHistogramSize(const BiasParams ¶ms,
^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:239:26: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
newHistogramSize = newHistogramSizeInitialStage(params, t, covered, weightsumCovering, fplog);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:239:26: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/support.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/imd/imd.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/dimparams.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.h:60,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::GridAxis}; _Tp = gmx::GridAxis; _Alloc = std::allocator<gmx::GridAxis>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::GridAxis>::iterator {aka __gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function 'void gmx::mapGridToDataGrid(std::vector<int>*, const double* const*, int, const string&, const gmx::Grid&, const string&)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::Grid::Grid(const std::vector<gmx::DimParams>&, const gmx::AwhDimParams*)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/imd/imdsocket.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/anadih.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/binsearch.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/cmat.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/dens_filter.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/dlist.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/eigio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/fitahx.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_anadock.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_anaeig.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_analyze.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_angle.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_awh.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_bar.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/fileio/xvgr.h:43,
from /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_awh.cpp:61:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/fileio/xvgr.h:43,
from /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_awh.cpp:61:
/usr/include/c++/7/bits/stl_vector.h: In function 'int gmx_awh(int, char**)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_bundle.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_chi.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_cluster.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_clustsize.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_confrms.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_covar.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_current.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_density.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_densmap.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_densorder.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_sans.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_sham.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_sigeps.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_sorient.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_spatial.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_spol.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_tcaf.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_traj.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjcat.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjconv.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjorder.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_tune_pme.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_vanhove.cpp
/<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjconv.cpp: In function 'int gmx_trjconv(int, char**)':
/<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjconv.cpp:1699:66: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
put_atoms_in_compact_unitcell(ePBC, ecenter, fr.box,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
positionsArrayRef);
~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjconv.cpp:1699:66: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjconv.cpp:372:50: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
put_atoms_in_compact_unitcell(ePBC, ecenter, box, newComArrayRef);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjconv.cpp:372:50: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjconv.cpp:372:50: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjconv.cpp:372:50: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjconv.cpp:315:46: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
put_atoms_in_compact_unitcell(ePBC, ecenter, box, newComArrayRef);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_trjconv.cpp:315:46: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_velacc.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_wham.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_wheel.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/gmx_xpm2ps.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/hxprops.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/nrama.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/insert-molecules.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/nm2type.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/pdb2gmx.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/pdb2top.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/insert-molecules.cpp:45:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >; _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/insert-molecules.cpp:45:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual int gmx::{anonymous}::InsertMolecules::run()':
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/pgutil.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/read-conformation.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/read-conformation.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/readir.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/read-conformation.h:38,
from /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/read-conformation.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/read-conformation.h:38,
from /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/read-conformation.cpp:37:
/usr/include/c++/7/bits/stl_vector.h: In function 'std::vector<double> makeExclusionDistances(const t_atoms*, gmx_atomprop_t, real, real)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/readpull.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/readrot.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/resall.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/solvate.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/specbond.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/ter_db.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/solvate.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >; _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tomorse.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/solvate.cpp:44:
/usr/include/c++/7/bits/stl_vector.h: In function 'int gmx_solvate(int, char**)':
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/topdirs.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/topio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/toppush.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/topshake.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/toputil.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/vsite_parm.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/x2top.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/xlate.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/autocorr.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/crosscorr.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/manyautocorrelation.h:47,
from /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/autocorr.cpp:57:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/manyautocorrelation.h:47,
from /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/autocorr.cpp:57:
/usr/include/c++/7/bits/stl_vector.h: In function 'void low_do_four_core(int, real*, real*, int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/expfit.cpp
/usr/include/c++/7/bits/stl_vector.h: In function 'void low_do_autocorr(const char*, const gmx_output_env_t*, const char*, int, int, int, real**, real, long unsigned int, int, gmx_bool, gmx_bool, gmx_bool, real, real, int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/gmx_lmcurve.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/integrate.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/manyautocorrelation.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/polynomials.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/statistics/statistics.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/abstractdata.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/analysisdata.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/manyautocorrelation.h:47,
from /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/manyautocorrelation.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/manyautocorrelation.h:47,
from /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/manyautocorrelation.cpp:44:
/usr/include/c++/7/bits/stl_vector.h: In function '_Z16many_auto_correlPSt6vectorIS_IdSaIdEESaIS1_EE._omp_fn.0':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/arraydata.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/dataframe.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/datamodule.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/datamodulemanager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/dataproxy.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/datastorage.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/analysisdata/arraydata.h:46,
from /<<PKGBUILDDIR>>/src/gromacs/analysisdata/arraydata.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::AbstractAnalysisArrayData::AbstractAnalysisArrayData()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/modules/average.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/modules/displacement.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/modules/frameaverager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/modules/histogram.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/analysisdata/dataframe.h:46,
from /<<PKGBUILDDIR>>/src/gromacs/analysisdata/modules/displacement.cpp:46:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = gmx::AnalysisDataValue; _Alloc = std::allocator<gmx::AnalysisDataValue>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::AnalysisDataValue>::iterator {aka __gnu_cxx::__normal_iterator<gmx::AnalysisDataValue*, std::vector<gmx::AnalysisDataValue> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::AnalysisDataValue*, std::vector<gmx::AnalysisDataValue> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::AnalysisDataValue*, std::vector<gmx::AnalysisDataValue> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/analysisdata/datastorage.h:46,
from /<<PKGBUILDDIR>>/src/gromacs/analysisdata/datastorage.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gmx::AnalysisDataValue&}; _Tp = gmx::AnalysisDataValue; _Alloc = std::allocator<gmx::AnalysisDataValue>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::AnalysisDataValue>::iterator {aka __gnu_cxx::__normal_iterator<gmx::AnalysisDataValue*, std::vector<gmx::AnalysisDataValue> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::AnalysisDataValue>::iterator {aka __gnu_cxx::__normal_iterator<gmx::AnalysisDataValue*, std::vector<gmx::AnalysisDataValue> >}' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/modules/lifetime.cpp
/<<PKGBUILDDIR>>/src/gromacs/analysisdata/datastorage.cpp: In member function 'void gmx::internal::AnalysisDataStorageFrameData::addPointSet(int, int, gmx::ArrayRef<const gmx::AnalysisDataValue>)':
/<<PKGBUILDDIR>>/src/gromacs/analysisdata/datastorage.cpp:609:1: note: parameter passing for argument of type 'gmx::ArrayRef<const gmx::AnalysisDataValue>' changed in GCC 7.1
AnalysisDataStorageFrameData::addPointSet(int dataSetIndex, int firstColumn,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/analysisdata/datastorage.h:46,
from /<<PKGBUILDDIR>>/src/gromacs/analysisdata/datastorage.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::AnalysisDataValue*, std::vector<gmx::AnalysisDataValue> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/analysisdata/datastorage.cpp: In member function 'void gmx::AnalysisDataStorageFrame::finishPointSet()':
/<<PKGBUILDDIR>>/src/gromacs/analysisdata/datastorage.cpp:749:27: note: parameter passing for argument of type 'gmx::ArrayRef<const gmx::AnalysisDataValue>' changed in GCC 7.1
data_->addPointSet(currentDataSet_, firstColumn,
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makeConstArrayRef(values_).
~~~~~~~~~~~~~~~~~~~~~~~~~~~
subArray(begin, end-begin));
~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/analysisdata/datastorage.cpp:749:27: note: parameter passing for argument of type 'gmx::ArrayRef<const gmx::AnalysisDataValue>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/modules/plot.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/centerofmass.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/compiler.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/evaluate.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/indexutil.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/mempool.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/params.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/parser.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/parsetree.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/poscalc.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/position.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -Wno-unused-parameter -Wno-unused-function -o CMakeFiles/libgromacs.dir/selection/scanner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/scanner.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/scanner_internal.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/selection.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/selectioncollection.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/selectionoption.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/selectionoptionbehavior.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/selection.h:47,
from /<<PKGBUILDDIR>>/src/gromacs/selection/selection.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/selection.h:47,
from /<<PKGBUILDDIR>>/src/gromacs/selection/selection.cpp:44:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void gmx::internal::SelectionData::initializeMassesAndCharges(const gmx_mtop_t*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/selectionoptionmanager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/selelem.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/selhelp.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/selmethod.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/selvalue.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_compare.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_distance.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_insolidangle.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_keywords.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_merge.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_permute.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_position.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_same.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/sm_simple.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/symrec.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/analysismodule.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/analysissettings.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/runnercommon.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/angle.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/distance.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/pairdist.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/analysismodule.h:49,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/freevolume.h:45,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/analysismodule.h:49,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/freevolume.h:45,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void gmx::analysismodules::{anonymous}::FreeVolume::initAnalysis(const gmx::TrajectoryAnalysisSettings&, const gmx::TopologyInformation&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/analysismodule.h:49,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/freevolume.h:45,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/rdf.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/sasa.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/select.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/analysismodule.h:49,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/sasa.h:45,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/sasa.cpp:46:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::analysismodules::{anonymous}::Sasa::initAnalysis(const gmx::TrajectoryAnalysisSettings&, const gmx::TopologyInformation&)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/analysismodule.h:49,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/sasa.h:45,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/sasa.cpp:46:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/trajectory.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/broadcaststructs.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/calc_verletbuf.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/calcmu.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/calcmu.cpp: In function 'void calc_mu(int, int, gmx::ArrayRef<gmx::BasicVector<double> >, real*, real*, int, double*, double*)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/calcmu.cpp:50:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void calc_mu(int start, int homenr, gmx::ArrayRef<gmx::RVec> x, real q[], real qB[],
^~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/calcvir.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/clincs.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/compute_io.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/constr.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/coupling.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/csettle.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/ebin.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/expanded.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/force.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/forcerec.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/force.cpp: In function 'void sum_dhdl(gmx_enerdata_t*, gmx::ArrayRef<const double>, t_lambda*)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/force.cpp:724:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void sum_dhdl(gmx_enerdata_t *enerd, gmx::ArrayRef<const real> lambda, t_lambda *fepvals)
^~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/genborn.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/genborn_allvsall.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/gmx_omp_nthreads.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/groupcoord.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/md_support.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdatoms.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdebin.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdebin_bar.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp: In function 'void mdoutf_write_to_trajectory_files(FILE*, t_commrec*, gmx_mdoutf_t, int, gmx_mtop_t*, gmx_int64_t, double, t_state*, t_state*, ObservablesHistory*, gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void mdoutf_write_to_trajectory_files(FILE *fplog, t_commrec *cr,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp:269:31: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(cr->dd, state_local, state_local->x, globalXRef);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp:274:31: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(cr->dd, state_local, state_local->v, globalVRef);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp:280:27: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(cr->dd, state_local, f_local, gmx::arrayRefFromArray(reinterpret_cast<gmx::RVec *>(f_global), f_local.size()));
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdsetup.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_atomdata.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_grid.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'void write_em_traj(FILE*, t_commrec*, gmx_mdoutf_t, gmx_bool, gmx_bool, const char*, gmx_mtop_t*, t_inputrec*, gmx_int64_t, em_state_t*, t_state*, ObservablesHistory*)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top_global, step, (double)step,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&state->s, state_global, observablesHistory,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->f);
~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'void evaluate_energy(FILE*, t_commrec*, gmx_mtop_t*, em_state_t*, gmx_localtop_t*, t_inputrec*, t_nrnb*, gmx_wallcycle_t, gmx_global_stat_t, gmx_vsite_t*, gmx_constr_t, t_fcdata*, t_graph*, gmx::MDAtoms*, t_forcerec*, real*, gmx_enerdata_t*, real (*)[3], real (*)[3], gmx_int64_t, gmx_bool)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, inputrec,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
count, nrnb, wcycle, top, &top_global->groups,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->s.box, ems->s.x, &ems->s.hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->f, force_vir, mdAtoms->mdatoms(), enerd, fcd,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->s.lambda, graph, fr, vsite, mu_tot, t, nullptr, TRUE,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bNS ? GMX_FORCE_NS : 0),
~~~~~~~~~~~~~~~~~~~~~~~~~
DOMAINDECOMP(cr) ?
~~~~~~~~~~~~~~~~~~
DdOpenBalanceRegionBeforeForceComputation::yes :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdOpenBalanceRegionBeforeForceComputation::no,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DOMAINDECOMP(cr) ?
~~~~~~~~~~~~~~~~~~
DdCloseBalanceRegionAfterForceComputation::yes :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdCloseBalanceRegionAfterForceComputation::no);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:837:13: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals);
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'void evaluate_energy(FILE*, t_commrec*, gmx_mtop_t*, em_state_t*, gmx_localtop_t*, t_inputrec*, t_nrnb*, gmx_wallcycle_t, gmx_global_stat_t, gmx_vsite_t*, gmx_constr_t, t_fcdata*, t_graph*, gmx::MDAtoms*, t_forcerec*, real*, gmx_enerdata_t*, real (*)[3], real (*)[3], gmx_int64_t, gmx_bool)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, inputrec,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
count, nrnb, wcycle, top, &top_global->groups,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->s.box, ems->s.x, &ems->s.hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->f, force_vir, mdAtoms->mdatoms(), enerd, fcd,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->s.lambda, graph, fr, vsite, mu_tot, t, nullptr, TRUE,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bNS ? GMX_FORCE_NS : 0),
~~~~~~~~~~~~~~~~~~~~~~~~~
DOMAINDECOMP(cr) ?
~~~~~~~~~~~~~~~~~~
DdOpenBalanceRegionBeforeForceComputation::yes :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdOpenBalanceRegionBeforeForceComputation::no,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DOMAINDECOMP(cr) ?
~~~~~~~~~~~~~~~~~~
DdCloseBalanceRegionAfterForceComputation::yes :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdCloseBalanceRegionAfterForceComputation::no);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:837:13: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals);
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'void init_em(FILE*, const char*, t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const MdrunOptions&, t_state*, gmx_mtop_t*, em_state_t*, gmx_localtop_t**, t_nrnb*, real*, t_forcerec*, gmx_enerdata_t**, t_graph**, gmx::MDAtoms*, gmx_global_stat**, gmx_vsite_t*, gmx_constr_t, gmx_shellfc_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, gmx_wallcycle_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:350:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
initialize_lambdas(fplog, ir, &(state_global->fep_state), state_global->lambda, nullptr);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:350:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_search.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'double gmx::do_lbfgs(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:1872:41: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top_global, step, (real)step, &ems.s, state_global, observablesHistory, ems.f);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_tuning.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/ns.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'double gmx::do_cg(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top_global, step, (double)step,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&state->s, state_global, observablesHistory,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->f);
~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'double gmx::do_steep(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top_global, step, (double)step,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&state->s, state_global, observablesHistory,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->f);
~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nsgrid.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/perf_est.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_gamess.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_gaussian.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_mopac.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_orca.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qmmm.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/rbin.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/rf_util.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shakef.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/shakef.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/sighandler.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/simulationsignal.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/splitter.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp: In function 'void relax_shell_flexcon(FILE*, t_commrec*, gmx_bool, gmx_int64_t, t_inputrec*, gmx_bool, int, gmx_localtop_t*, gmx_constr_t, gmx_enerdata_t*, t_fcdata*, t_state*, gmx::PaddedRVecVector*, real (*)[3], t_mdatoms*, t_nrnb*, gmx_wallcycle_t, t_graph*, gmx_groups_t*, gmx_shellfc_t*, t_forcerec*, gmx_bool, double, real*, gmx_vsite_t*, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, inputrec, mdstep, nrnb, wcycle, top, groups,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->box, state->x, &state->hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
force[Min], force_vir, md, enerd, fcd,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->lambda, graph,
~~~~~~~~~~~~~~~~~~~~~
fr, vsite, mu_tot, t, nullptr, bBornRadii,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bDoNS ? GMX_FORCE_NS : 0) | force_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddOpenBalanceRegion, ddCloseBalanceRegion);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, inputrec, 1, nrnb, wcycle,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top, groups, state->box, pos[Try], &state->hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
force[Try], force_vir,
~~~~~~~~~~~~~~~~~~~~~~
md, enerd, fcd, state->lambda, graph,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fr, vsite, mu_tot, t, nullptr, bBornRadii,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
force_flags,
~~~~~~~~~~~~
ddOpenBalanceRegion, ddCloseBalanceRegion);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/stat.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tgroup.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp: In function 'void put_atoms_in_box_omp(int, const real (*)[3], gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2684:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void put_atoms_in_box_omp(int ePBC, const matrix box, gmx::ArrayRef<gmx::RVec> x)
^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp: In function 'void do_force_cutsVERLET(FILE*, t_commrec*, t_inputrec*, gmx_int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, gmx_groups_t*, real (*)[3], gmx::PaddedArrayRef<gmx::BasicVector<double> >, history_t*, gmx::PaddedArrayRef<gmx::BasicVector<double> >, real (*)[3], t_mdatoms*, gmx_enerdata_t*, t_fcdata*, real*, t_graph*, t_forcerec*, interaction_const_t*, gmx_vsite_t*, real*, double, gmx_edsam_t, gmx_bool, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:1042:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
static void do_force_cutsVERLET(FILE *fplog, t_commrec *cr,
^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:1042:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp: In function 'void do_force(FILE*, t_commrec*, t_inputrec*, gmx_int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, gmx_groups_t*, real (*)[3], gmx::PaddedArrayRef<gmx::BasicVector<double> >, history_t*, gmx::PaddedArrayRef<gmx::BasicVector<double> >, real (*)[3], t_mdatoms*, gmx_enerdata_t*, t_fcdata*, gmx::ArrayRef<double>, t_graph*, t_forcerec*, gmx_vsite_t*, real*, double, gmx_edsam_t, gmx_bool, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
void do_force(FILE *fplog, t_commrec *cr,
^~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2120:32: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force_cutsVERLET(fplog, cr, inputrec,
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
step, nrnb, wcycle,
~~~~~~~~~~~~~~~~~~~
top,
~~~~
groups,
~~~~~~~
box, x, hist,
~~~~~~~~~~~~~
force, vir_force,
~~~~~~~~~~~~~~~~~
mdatoms,
~~~~~~~~
enerd, fcd,
~~~~~~~~~~~
lambda.data(), graph,
~~~~~~~~~~~~~~~~~~~~~
fr, fr->ic,
~~~~~~~~~~~
vsite, mu_tot,
~~~~~~~~~~~~~~
t, ed,
~~~~~~
bBornRadii,
~~~~~~~~~~~
flags,
~~~~~~
ddOpenBalanceRegion,
~~~~~~~~~~~~~~~~~~~~
ddCloseBalanceRegion);
~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2120:32: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp: In function 'void initialize_lambdas(FILE*, t_inputrec*, int*, gmx::ArrayRef<double>, double*)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2834:13: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
extern void initialize_lambdas(FILE *fplog, t_inputrec *ir, int *fep_state, gmx::ArrayRef<real> lambda, double *lam0)
^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2834:13: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp: In function 'void init_md(FILE*, t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const gmx_output_env_t*, const MdrunOptions&, double*, double*, t_state*, double*, t_nrnb*, gmx_mtop_t*, gmx_update_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, real (*)[3], real (*)[3], real*, gmx_bool*, t_vcm**, gmx_wallcycle_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2931:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
initialize_lambdas(fplog, ir, &globalState->fep_state, globalState->lambda, lam0);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2931:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2937:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
initialize_lambdas(fplog, ir, &tmpFepState, tmpLambda, lam0);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2937:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp: In function 'void do_md_trajectory_writing(FILE*, t_commrec*, int, const t_filenm*, gmx_int64_t, gmx_int64_t, double, t_inputrec*, t_state*, t_state*, ObservablesHistory*, gmx_mtop_t*, t_forcerec*, gmx_mdoutf_t, t_mdebin*, gmx_ekindata_t*, gmx::ArrayRef<gmx::BasicVector<double> >, int*, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp:55:1: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
do_md_trajectory_writing(FILE *fplog,
^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp:148:41: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, top_global,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
step, t, state, state_global, observablesHistory, f);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp:148:41: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/vcm.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp: In function 'double gmx::do_tpi(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp:662:21: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, inputrec,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
step, nrnb, wcycle, top, &top_global->groups,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state_global->box, state_global->x, &state_global->hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
f, force_vir, mdatoms, enerd, fcd,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state_global->lambda,
~~~~~~~~~~~~~~~~~~~~~
nullptr, fr, nullptr, mu_tot, t, nullptr, FALSE,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GMX_FORCE_NONBONDED | GMX_FORCE_ENERGY |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bNS ? GMX_FORCE_DYNAMICBOX | GMX_FORCE_NS : 0) |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bStateChanged ? GMX_FORCE_STATECHANGED : 0),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdOpenBalanceRegionBeforeForceComputation::no,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdCloseBalanceRegionAfterForceComputation::no);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp:662:21: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp:662:21: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp: In function 'void update_constraints(FILE*, gmx_int64_t, real*, t_inputrec*, t_mdatoms*, t_state*, gmx_bool, t_graph*, gmx::PaddedArrayRef<gmx::BasicVector<double> >, t_idef*, real (*)[3], t_commrec*, t_nrnb*, gmx_wallcycle_t, gmx_update_t*, gmx_constr_t, gmx_bool, gmx_bool)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp:1544:6: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
void update_constraints(FILE *fplog,
^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp: In function 'void update_coords(FILE*, gmx_int64_t, t_inputrec*, t_mdatoms*, t_state*, gmx::PaddedArrayRef<gmx::BasicVector<double> >, t_fcdata*, gmx_ekindata_t*, real (*)[3], gmx_update_t*, int, t_commrec*, gmx_constr_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp:1878:6: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
void update_coords(FILE *fplog,
^~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/wall.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/wnblist.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/applied-forces/electricfield.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/calcgrid.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/fft.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/fft5d.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp: In function 'void constructVsitesGlobal(const gmx_mtop_t&, gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp:765:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void constructVsitesGlobal(const gmx_mtop_t &mtop,
^~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/parallel_3dfft.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.h:43,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/fft_fftw3.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.h:43,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In function '_Z25split_vsites_over_threadsPK7t_ilistPK9t_iparamsPK9t_mdatomsP11gmx_vsite_t._omp_fn.3':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/hostallocator.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/gpu_utils.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/cpuinfo.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/detecthardware.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/gpu_hw_info.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/hardwaretopology.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/printhardware.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/identifyavx512fmaunits.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/handlerestart.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/mdmodules.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/threadaffinity.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/abstractoption.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/abstractsection.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/behaviorcollection.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/filenameoption.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/filenameoptionmanager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/options.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsassigner.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsection.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsvisitor.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/timeunitmanager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/treesupport.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/decidegpuusage.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/findallgputasks.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.h:50,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.h:50,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp:44:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate<double>::ValueList*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/reportgpuusage.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/resourcedivision.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/taskassignment.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/usergpuids.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectory/trajectoryframe.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/errhandler.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/tmpi_malloc.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/atomic.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/lock.c
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scan.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/scan.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/numa_malloc.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/numa_malloc.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/once.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/lmfit/lmmin.cpp.o -c /<<PKGBUILDDIR>>/src/external/lmfit/lmmin.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o -c /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/baseversion-gen.c
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libgromacs_d.so.3 -o ../../lib/libgromacs_d.so.3.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib/arm-linux-gnueabihf/libhwloc.so -ldl -lrt /usr/lib/arm-linux-gnueabihf/libfftw3.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so -lpthread -fopenmp -lm /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lpthread -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.3.0.0 ../../lib/libgromacs_d.so.3 ../../lib/libgromacs_d.so
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /<<PKGBUILDDIR>>/src/programs/legacymodules.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/conftest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/filematchers.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/interactivetest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/loggertest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/mpi-printer.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/mpitest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/refdata.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/refdata-xml.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/stdiohelper.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/stringtest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testasserts.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testfilemanager.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testfileredirector.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testoptions.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<<PKGBUILDDIR>>/src/external/tinyxml2/tinyxml2.cpp
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cd /<<PKGBUILDDIR>>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/settle.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.3.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm
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cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/shake.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/multisimtest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/refdata_tests.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/replicaexchange.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/domain_decomposition.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/simulationsignal.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/applied-forces/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/applied-forces/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color=
Scanning dependencies of target applied-forces-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/applied-forces/tests/electricfield.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 80%] Built target mdrun-mpi-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/testasserts_tests.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/xvgtest_tests.cpp
/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/listed-forces/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/listed-forces/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
Scanning dependencies of target listed-forces-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/tests/bonded.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 81%] Built target applied-forces-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 82%] Built target mdlib-test
/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/commandline/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color=
Scanning dependencies of target commandline-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 82%] Built target listed-forces-test
/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/ewald/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color=
Scanning dependencies of target ewald-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmebsplinetest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.3.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 83%] Built target testutils-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmegathertest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesolvetest.cpp
/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/fft/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/fft/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color=
Scanning dependencies of target fft-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/tests/fft.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 84%] Built target fft-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlineparser.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmetestcommon.cpp
/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color=
Scanning dependencies of target gpu_utils-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests/gputest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests/hostallocator.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/testhardwarecontexts.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp
/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/hardware/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/hardware/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color=
Scanning dependencies of target hardware-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/tests/hardwaretopology.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/pargs.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 84%] Built target ewald-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests/devicetransfers.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 85%] Built target gpu_utils-test
/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/math/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color=
Scanning dependencies of target math-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/tests/functions.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/tests/invertmatrix.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 85%] Built target hardware-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/tests/vectypes.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 86%] Built target commandline-test
/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color=
Scanning dependencies of target mdrunutility-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests/threadaffinity.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color=
Scanning dependencies of target mdrunutility-mpi-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color=
Scanning dependencies of target onlinehelp-test
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/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests/helpformat.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests/helpmanager.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 86%] Built target math-test
/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/options/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color=
Scanning dependencies of target options-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/abstractoptionstorage.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 86%] Built target mdrunutility-test
/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/random/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color=
Scanning dependencies of target random-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/exponentialdistribution.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 87%] Built target mdrunutility-mpi-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/filenameoption.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/gammadistribution.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/normaldistribution.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 88%] Built target onlinehelp-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/seed.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/filenameoptionmanager.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/option.cpp
/usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/tables/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/tables/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color=
Scanning dependencies of target table-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/taskassignment/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/taskassignment/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color=
Scanning dependencies of target taskassignment-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/tests/usergpuids.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/tabulatednormaldistribution.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/optionsassigner.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/random/tabulatednormaldistribution.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/random/tests/tabulatednormaldistribution.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::TabulatedNormalDistributionTest_OutputDouble14_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]':
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]':
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}},
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}},
^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 88%] Built target taskassignment-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/uniformintdistribution.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/c++/7/bits/random.h:34,
from /usr/include/c++/7/random:49,
from /<<PKGBUILDDIR>>/src/gromacs/random/seed.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/random/threefry.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:43:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/7/bits/stl_vector.h:383:7: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
vector(initializer_list<value_type> __l,
^~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 89%] Built target table-test
/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/utility/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color=
Scanning dependencies of target utility-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/alignedallocator.cpp
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp: In function '(static initializers for /<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp)':
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:119:44: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
}};
^
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:131:43: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
}};
^
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:142:42: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
}};
^
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/arrayref.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/uniformrealdistribution.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/repeatingsection.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 90%] Built target random-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/timeunitmanager.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/treesupport.cpp
/usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/fileio/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color=
Scanning dependencies of target fileio-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tests/confio.cpp
/usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/pulling/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/pulling/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color=
Scanning dependencies of target pull-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/tests/pull.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tests/readinp.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 90%] Built target pull-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tests/tngio.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 91%] Built target options-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/bitmask32.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/bitmask64.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 91%] Built target fileio-test
/usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/awh/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color=
Scanning dependencies of target awh-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/tests/biasstate.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/tests/grid.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.h:55,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.h:55,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp:37:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void gmx::test::BiasTest_ForcesBiasPmf_Test::TestBody()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.h:55,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp:37:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/dimparams.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.h:60,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/grid.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::test::gridTest_neighborhood_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'testing::Test* testing::internal::ParameterizedTestFactory<TestClass>::CreateTest() [with TestClass = gmx::test::BiasTest_ForcesBiasPmf_Test]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::test::BiasTest_DetectsCovering_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.h:57,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/biasstate.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::test::BiasStateTest::BiasStateTest()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/bitmask128.cpp
/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/simd/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color=
Scanning dependencies of target simd-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/bootstrap_loadstore.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 91%] Built target awh-test
/usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxana/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color=
Scanning dependencies of target gmxana-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests/gmx_traj.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/base.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests/gmx_trjconv.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/data.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_floatingpoint.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 91%] Built target gmxana-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/keyvaluetreetransform.cpp
/usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color=
Scanning dependencies of target gmxpreprocess-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tests/genconf.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_vector_operations.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_math.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tests/readir.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_memory.cpp
/usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color=
Scanning dependencies of target correlations-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests/autocorr.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_integer.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tests/solvate.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4_floatingpoint.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/logger.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests/correlationdataset.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 91%] Built target gmxpreprocess-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4_vector_operations.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/mutex.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests/expfit.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4_math.cpp
/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color=
Scanning dependencies of target analysisdata-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/analysisdata.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/scalar.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 92%] Built target correlations-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/scalar_util.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/path.cpp
/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/selection/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color=
Scanning dependencies of target selection-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/indexutil.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/scalar_math.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/stringutil.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 93%] Built target simd-test
/usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color=
Scanning dependencies of target trajectoryanalysis-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/moduletest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/arraydata.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/average.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/textreader.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/poscalc.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/histogram.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/selectioncollection.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/angle.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/lifetime.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/distance.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/textwriter.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/freevolume.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/typetraits.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 93%] Built target analysisdata-test
/usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/energyanalysis/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color=
Scanning dependencies of target energyanalysis-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/legacyenergy.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/pairdist.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/rdf.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 95%] Built target utility-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/sasa.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/selectionoption.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
/usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/compat/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/gromacs/compat/tests /<<PKGBUILDDIR>>/build/basic/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color=
Scanning dependencies of target compat-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/compat/tests/make_unique.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 95%] Built target energyanalysis-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/select.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/programs/mdrun/tests /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color=
Scanning dependencies of target mdrun-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 95%] Built target compat-test
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/trajectory.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/unionfind.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/grompp.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/initialconstraints.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/toputils.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/rerun.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/rerun.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/trajectory_writing.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 96%] Built target trajectoryanalysis-test
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/trajectoryreader.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[ 97%] Built target selection-test
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/compressed_x_output.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/swapcoords.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/interactiveMD.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/termination.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/pmetest.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/rerun.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[100%] Built target mdrun-test
/usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
cd /<<PKGBUILDDIR>>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic /<<PKGBUILDDIR>>/build/basic/CMakeFiles/tests.dir/DependInfo.cmake --color=
Scanning dependencies of target tests
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic'
make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
[100%] Built target tests
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/basic/CMakeFiles 0
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/build/basic'
(cd build/basic; LD_LIBRARY_PATH=/<<PKGBUILDDIR>>/build/basic/lib ctest -V)
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/build/basic/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/build/basic/DartConfiguration.tcl
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/build/basic/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/build/basic/DartConfiguration.tcl
Test project /<<PKGBUILDDIR>>/build/basic
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
Start 1: TestUtilsUnitTests
1: Test command: /<<PKGBUILDDIR>>/build/basic/bin/testutils-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/TestUtilsUnitTests.xml"
1: Test timeout computed to be: 30
1: [==========] Running 59 tests from 5 test cases.
1: [----------] Global test environment set-up.
1: [----------] 10 tests from InteractiveTestHelperTest
1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession
1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (2 ms)
1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline
1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms)
1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput
1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput
1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (2 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput
1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput
1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (2 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput
1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput
1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput
1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput
1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms)
1: [----------] 10 tests from InteractiveTestHelperTest (13 ms total)
1:
1: [----------] 34 tests from ReferenceDataTest
1: [ RUN ] ReferenceDataTest.HandlesSimpleData
1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData
1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks
1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesStringBlockData
1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesVectorData
1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesSequenceData
1: [ OK ] ReferenceDataTest.HandlesSequenceData (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData
1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesIncorrectData
1: [ OK ] ReferenceDataTest.HandlesIncorrectData (2 ms)
1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType
1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMissingData
1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesUncheckedData
1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence
1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound
1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesVariants
1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree
1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey
1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey
1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue
1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (2 ms)
1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType
1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile
1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings
1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace
1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings
1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock
1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices
1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (2 ms)
1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData
1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds
1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds
1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (2 ms)
1: [ RUN ] ReferenceDataTest.HandlesReadingValues
1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms)
1: [----------] 34 tests from ReferenceDataTest (20 ms total)
1:
1: [----------] 7 tests from FloatingPointDifferenceTest
1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues
1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues
1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign
1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero
1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences
1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero
1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN
1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms)
1: [----------] 7 tests from FloatingPointDifferenceTest (1 ms total)
1:
1: [----------] 4 tests from FloatingPointToleranceTest
1: [ RUN ] FloatingPointToleranceTest.UlpTolerance
1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms)
1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint
1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms)
1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp
1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms)
1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance
1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms)
1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total)
1:
1: [----------] 4 tests from XvgTests
1: [ RUN ] XvgTests.CreateFile
1: [ OK ] XvgTests.CreateFile (1 ms)
1: [ RUN ] XvgTests.CheckMissing
1: [ OK ] XvgTests.CheckMissing (1 ms)
1: [ RUN ] XvgTests.CheckExtra
1: [ OK ] XvgTests.CheckExtra (1 ms)
1: [ RUN ] XvgTests.ReadIncorrect
1: [ OK ] XvgTests.ReadIncorrect (1 ms)
1: [----------] 4 tests from XvgTests (4 ms total)
1:
1: [----------] Global test environment tear-down
1: [==========] 59 tests from 5 test cases ran. (39 ms total)
1: [ PASSED ] 59 tests.
1/33 Test #1: TestUtilsUnitTests ............... Passed 0.06 sec
test 2
Start 2: TestUtilsMpiUnitTests
2: Test command: /<<PKGBUILDDIR>>/build/basic/bin/testutils-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/TestUtilsMpiUnitTests.xml"
2: Test timeout computed to be: 30
2: [==========] Running 1 test from 1 test case.
2: [----------] Global test environment set-up.
2: [----------] 1 test from MpiSelfTest
2: [ RUN ] MpiSelfTest.Runs
2: [ OK ] MpiSelfTest.Runs (1 ms)
2: [----------] 1 test from MpiSelfTest (1 ms total)
2:
2: [----------] Global test environment tear-down
2: [==========] 1 test from 1 test case ran. (1 ms total)
2: [ PASSED ] 1 test.
2/33 Test #2: TestUtilsMpiUnitTests ............ Passed 0.02 sec
test 3
Start 3: MdlibUnitTest
3: Test command: /<<PKGBUILDDIR>>/build/basic/bin/mdlib-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/MdlibUnitTest.xml"
3: Test timeout computed to be: 30
3: [==========] Running 37 tests from 5 test cases.
3: [----------] Global test environment set-up.
3: [----------] 1 test from VerletBufferConstraintTest
3: [ RUN ] VerletBufferConstraintTest.EqualMasses
3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms)
3: [----------] 1 test from VerletBufferConstraintTest (0 ms total)
3:
3: [----------] 4 tests from ShakeTest
3: [ RUN ] ShakeTest.ConstrainsOneBond
3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms)
3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds
3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms)
3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom
3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms)
3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms
3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms)
3: [----------] 4 tests from ShakeTest (0 ms total)
3:
3: [----------] 1 test from NullSignalTest
3: [ RUN ] NullSignalTest.NullSignallerWorks
3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms)
3: [----------] 1 test from NullSignalTest (0 ms total)
3:
3: [----------] 7 tests from SignalTest
3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace
3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms)
3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace
3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms)
3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace
3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms)
3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace
3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms)
3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace
3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (0 ms)
3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace
3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms)
3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace
3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms)
3: [----------] 7 tests from SignalTest (1 ms total)
3:
3: [----------] 24 tests from WithParameters/SettleTest
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (1 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (1 ms)
3: [----------] 24 tests from WithParameters/SettleTest (2 ms total)
3:
3: [----------] Global test environment tear-down
3: [==========] 37 tests from 5 test cases ran. (3 ms total)
3: [ PASSED ] 37 tests.
3/33 Test #3: MdlibUnitTest .................... Passed 0.02 sec
test 4
Start 4: AppliedForcesUnitTest
4: Test command: /<<PKGBUILDDIR>>/build/basic/bin/applied-forces-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/AppliedForcesUnitTest.xml"
4: Test timeout computed to be: 30
4: [==========] Running 3 tests from 1 test case.
4: [----------] Global test environment set-up.
4: [----------] 3 tests from ElectricFieldTest
4: [ RUN ] ElectricFieldTest.Static
4: [ OK ] ElectricFieldTest.Static (0 ms)
4: [ RUN ] ElectricFieldTest.Oscillating
4: [ OK ] ElectricFieldTest.Oscillating (0 ms)
4: [ RUN ] ElectricFieldTest.Pulsed
4: [ OK ] ElectricFieldTest.Pulsed (0 ms)
4: [----------] 3 tests from ElectricFieldTest (0 ms total)
4:
4: [----------] Global test environment tear-down
4: [==========] 3 tests from 1 test case ran. (0 ms total)
4: [ PASSED ] 3 tests.
4/33 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec
test 5
Start 5: ListedForcesTest
5: Test command: /<<PKGBUILDDIR>>/build/basic/bin/listed-forces-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/ListedForcesTest.xml"
5: Test timeout computed to be: 30
5: [==========] Running 15 tests from 1 test case.
5: [----------] Global test environment set-up.
5: [----------] 15 tests from BondedTest
5: [ RUN ] BondedTest.BondAnglePbcNone
5: [ OK ] BondedTest.BondAnglePbcNone (1 ms)
5: [ RUN ] BondedTest.BondAnglePbcXy
5: [ OK ] BondedTest.BondAnglePbcXy (0 ms)
5: [ RUN ] BondedTest.BondAnglePbcXyz
5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms)
5: [ RUN ] BondedTest.DihedralAnglePbcNone
5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms)
5: [ RUN ] BondedTest.DihedralAnglePbcXy
5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms)
5: [ RUN ] BondedTest.DihedralAnglePbcXyz
5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms)
5: [ RUN ] BondedTest.IfuncBondsPbcNo
5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms)
5: [ RUN ] BondedTest.IfuncBondsPbcXy
5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms)
5: [ RUN ] BondedTest.IfuncBondsPbcXyz
5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms)
5: [ RUN ] BondedTest.IfuncAnglesPbcNo
5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms)
5: [ RUN ] BondedTest.IfuncAnglesPbcXy
5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms)
5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ
5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms)
5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo
5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms)
5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy
5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms)
5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz
5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms)
5: [----------] 15 tests from BondedTest (2 ms total)
5:
5: [----------] Global test environment tear-down
5: [==========] 15 tests from 1 test case ran. (2 ms total)
5: [ PASSED ] 15 tests.
5/33 Test #5: ListedForcesTest ................. Passed 0.02 sec
test 6
Start 6: CommandLineUnitTests
6: Test command: /<<PKGBUILDDIR>>/build/basic/bin/commandline-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/CommandLineUnitTests.xml"
6: Test timeout computed to be: 30
6: [==========] Running 57 tests from 6 test cases.
6: [----------] Global test environment set-up.
6: [----------] 3 tests from CommandLineHelpModuleTest
6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp
6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms)
6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic
6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms)
6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp
6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (3 ms)
6: [----------] 3 tests from CommandLineHelpModuleTest (4 ms total)
6:
6: [----------] 6 tests from CommandLineHelpWriterTest
6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes
6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables
6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions
6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions
6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (1 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups
6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText
6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms)
6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total)
6:
6: [----------] 6 tests from CommandLineModuleManagerTest
6: [ RUN ] CommandLineModuleManagerTest.RunsModule
6: [ OK ] CommandLineModuleManagerTest.RunsModule (1 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms)
6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames
6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (1 ms)
6: [----------] 6 tests from CommandLineModuleManagerTest (3 ms total)
6:
6: [----------] 13 tests from CommandLineParserTest
6: [ RUN ] CommandLineParserTest.HandlesSingleValues
6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument
6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument
6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms)
6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument
6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers
6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesString
6: [ OK ] CommandLineParserTest.HandlesString (0 ms)
6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues
6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix
6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers
6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown
6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms)
6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault
6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms)
6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments
6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms)
6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions
6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms)
6: [----------] 13 tests from CommandLineParserTest (1 ms total)
6:
6: [----------] 6 tests from CommandLineProgramContextTest
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath
6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath
6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms)
6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total)
6:
6: [----------] 23 tests from ParseCommonArgsTest
6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs
6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args
6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs
6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs
6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs
6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs
6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs
6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit
6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs
6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs
6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults
6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName
6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension
6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles
6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles
6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms)
6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified
6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles
6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms)
6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension
6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (1 ms)
6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile
6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms)
6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName
6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode
6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (1 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName
6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms)
6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs
6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms)
6: [----------] 23 tests from ParseCommonArgsTest (5 ms total)
6:
6: [----------] Global test environment tear-down
6: [==========] 57 tests from 6 test cases ran. (15 ms total)
6: [ PASSED ] 57 tests.
6/33 Test #6: CommandLineUnitTests ............. Passed 0.04 sec
test 7
Start 7: EwaldUnitTests
7: Test command: /<<PKGBUILDDIR>>/build/basic/bin/ewald-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/EwaldUnitTests.xml"
7: Test timeout computed to be: 30
7: [==========] Running 257 tests from 10 test cases.
7: [----------] Global test environment set-up.
7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (5 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms)
7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total)
7:
7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (10 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (3 ms)
7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (87 ms total)
7:
7: [----------] 144 tests from SaneInput/PmeGatherTest
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (2 ms)
7: [----------] 144 tests from SaneInput/PmeGatherTest (155 ms total)
7:
7: [----------] 16 tests from SaneInput/PmeSolveTest
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (5 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (4 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (4 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (5 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (5 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (3 ms)
7: [----------] 16 tests from SaneInput/PmeSolveTest (53 ms total)
7:
7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (3 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (3 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (2 ms)
7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (18 ms total)
7:
7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (3 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (3 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (3 ms)
7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (32 ms total)
7:
7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (5 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (4 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (5 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (5 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (3 ms)
7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (51 ms total)
7:
7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms)
7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (43 ms total)
7:
7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (5 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (5 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (4 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (5 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms)
7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (51 ms total)
7:
7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (6 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (7 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (9 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (10 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (14 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (15 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (6 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (7 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (9 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (10 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (13 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (14 ms)
7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (139 ms total)
7:
7: [----------] Global test environment tear-down
7: [==========] 257 tests from 10 test cases ran. (649 ms total)
7: [ PASSED ] 257 tests.
7/33 Test #7: EwaldUnitTests ................... Passed 0.74 sec
test 8
Start 8: FFTUnitTests
8: Test command: /<<PKGBUILDDIR>>/build/basic/bin/fft-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/FFTUnitTests.xml"
8: Test timeout computed to be: 30
8: [==========] Running 14 tests from 4 test cases.
8: [----------] Global test environment set-up.
8: [----------] 2 tests from ManyFFTTest
8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test
8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (9 ms)
8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test
8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (13 ms)
8: [----------] 2 tests from ManyFFTTest (23 ms total)
8:
8: [----------] 1 test from FFTTest
8: [ RUN ] FFTTest.Real2DLength18_15Test
8: [ OK ] FFTTest.Real2DLength18_15Test (5 ms)
8: [----------] 1 test from FFTTest (5 ms total)
8:
8: [----------] 1 test from FFFTest3D
8: [ RUN ] FFFTest3D.Real5_6_9
8: [ OK ] FFFTest3D.Real5_6_9 (3 ms)
8: [----------] 1 test from FFFTest3D (3 ms total)
8:
8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (9 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (11 ms)
8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (32 ms total)
8:
8: [----------] Global test environment tear-down
8: [==========] 14 tests from 4 test cases ran. (64 ms total)
8: [ PASSED ] 14 tests.
8/33 Test #8: FFTUnitTests ..................... Passed 0.08 sec
test 9
Start 9: GpuUtilsUnitTests
9: Test command: /<<PKGBUILDDIR>>/build/basic/bin/gpu_utils-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/GpuUtilsUnitTests.xml"
9: Test timeout computed to be: 30
9: [==========] Running 30 tests from 6 test cases.
9: [----------] Global test environment set-up.
9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int
9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks
9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks
9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork
9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms)
9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve
9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms)
9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda
9:
9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
9: [ OK ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda (2 ms)
9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda
9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms)
9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory
9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms)
9: [----------] 7 tests from HostAllocatorTest/0 (2 ms total)
9:
9: [----------] 7 tests from HostAllocatorTest/1, where TypeParam = float
9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks
9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks
9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork
9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms)
9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve
9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms)
9: [ RUN ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda
9:
9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
9: [ OK ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda (2 ms)
9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda
9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms)
9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory
9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms)
9: [----------] 7 tests from HostAllocatorTest/1 (2 ms total)
9:
9: [----------] 7 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector<float>
9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks
9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks
9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork
9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms)
9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve
9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms)
9: [ RUN ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda
9:
9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
9: [ OK ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda (2 ms)
9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda
9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms)
9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory
9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms)
9: [----------] 7 tests from HostAllocatorTest/2 (2 ms total)
9:
9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator<float, gmx::HostAllocationPolicy>
9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment
9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment
9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment
9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms)
9: [----------] 3 tests from AllocatorTest/0 (0 ms total)
9:
9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator<int, gmx::HostAllocationPolicy>
9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment
9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment
9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment
9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms)
9: [----------] 3 tests from AllocatorTest/1 (0 ms total)
9:
9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator<gmx::BasicVector<float>, gmx::HostAllocationPolicy>
9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment
9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment
9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment
9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms)
9: [----------] 3 tests from AllocatorTest/2 (0 ms total)
9:
9: [----------] Global test environment tear-down
9: [==========] 30 tests from 6 test cases ran. (7 ms total)
9: [ PASSED ] 30 tests.
9/33 Test #9: GpuUtilsUnitTests ................ Passed 0.03 sec
test 10
Start 10: HardwareUnitTests
10: Test command: /<<PKGBUILDDIR>>/build/basic/bin/hardware-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/HardwareUnitTests.xml"
10: Test timeout computed to be: 30
10: [==========] Running 4 tests from 1 test case.
10: [----------] Global test environment set-up.
10: [----------] 4 tests from HardwareTopologyTest
10: [ RUN ] HardwareTopologyTest.Execute
10: [ OK ] HardwareTopologyTest.Execute (10 ms)
10: [ RUN ] HardwareTopologyTest.HwlocExecute
10: [ OK ] HardwareTopologyTest.HwlocExecute (10 ms)
10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency
10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (9 ms)
10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency
10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (9 ms)
10: [----------] 4 tests from HardwareTopologyTest (38 ms total)
10:
10: [----------] Global test environment tear-down
10: [==========] 4 tests from 1 test case ran. (39 ms total)
10: [ PASSED ] 4 tests.
10/33 Test #10: HardwareUnitTests ................ Passed 0.05 sec
test 11
Start 11: MathUnitTests
11: Test command: /<<PKGBUILDDIR>>/build/basic/bin/math-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/MathUnitTests.xml"
11: Test timeout computed to be: 30
11: [==========] Running 31 tests from 4 test cases.
11: [----------] Global test environment set-up.
11: [----------] 21 tests from FunctionTest
11: [ RUN ] FunctionTest.StaticLog2
11: [ OK ] FunctionTest.StaticLog2 (0 ms)
11: [ RUN ] FunctionTest.Log2I32Bit
11: [ OK ] FunctionTest.Log2I32Bit (0 ms)
11: [ RUN ] FunctionTest.Log2I64Bit
11: [ OK ] FunctionTest.Log2I64Bit (0 ms)
11: [ RUN ] FunctionTest.GreatestCommonDivisor
11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms)
11: [ RUN ] FunctionTest.InvsqrtFloat
11: [ OK ] FunctionTest.InvsqrtFloat (0 ms)
11: [ RUN ] FunctionTest.InvsqrtDouble
11: [ OK ] FunctionTest.InvsqrtDouble (0 ms)
11: [ RUN ] FunctionTest.InvsqrtInteger
11: [ OK ] FunctionTest.InvsqrtInteger (0 ms)
11: [ RUN ] FunctionTest.InvcbrtFloat
11: [ OK ] FunctionTest.InvcbrtFloat (0 ms)
11: [ RUN ] FunctionTest.InvcbrtDouble
11: [ OK ] FunctionTest.InvcbrtDouble (0 ms)
11: [ RUN ] FunctionTest.InvcbrtInteger
11: [ OK ] FunctionTest.InvcbrtInteger (0 ms)
11: [ RUN ] FunctionTest.SixthrootFloat
11: [ OK ] FunctionTest.SixthrootFloat (0 ms)
11: [ RUN ] FunctionTest.SixthrootDouble
11: [ OK ] FunctionTest.SixthrootDouble (0 ms)
11: [ RUN ] FunctionTest.SixthrootInteger
11: [ OK ] FunctionTest.SixthrootInteger (0 ms)
11: [ RUN ] FunctionTest.InvsixthrootFloat
11: [ OK ] FunctionTest.InvsixthrootFloat (0 ms)
11: [ RUN ] FunctionTest.InvsixthrootDouble
11: [ OK ] FunctionTest.InvsixthrootDouble (0 ms)
11: [ RUN ] FunctionTest.InvsixthrootInteger
11: [ OK ] FunctionTest.InvsixthrootInteger (0 ms)
11: [ RUN ] FunctionTest.Powers
11: [ OK ] FunctionTest.Powers (0 ms)
11: [ RUN ] FunctionTest.ErfInvFloat
11: [ OK ] FunctionTest.ErfInvFloat (0 ms)
11: [ RUN ] FunctionTest.ErfInvDouble
11: [ OK ] FunctionTest.ErfInvDouble (0 ms)
11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat
11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms)
11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble
11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms)
11: [----------] 21 tests from FunctionTest (5 ms total)
11:
11: [----------] 2 tests from InvertMatrixTest
11: [ RUN ] InvertMatrixTest.IdentityIsImpotent
11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms)
11: [ RUN ] InvertMatrixTest.ComputesInverse
11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms)
11: [----------] 2 tests from InvertMatrixTest (0 ms total)
11:
11: [----------] 2 tests from InvertBoxMatrixTest
11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent
11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms)
11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace
11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms)
11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total)
11:
11: [----------] 6 tests from RVecTest
11: [ RUN ] RVecTest.CanBeStoredInVector
11: [ OK ] RVecTest.CanBeStoredInVector (0 ms)
11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec
11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms)
11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec
11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms)
11: [ RUN ] RVecTest.WorksAsMutable_rvec
11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms)
11: [ RUN ] RVecTest.WorksAs_rvec_Array
11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms)
11: [ RUN ] RVecTest.WorksAs_rvec_Reference
11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms)
11: [----------] 6 tests from RVecTest (0 ms total)
11:
11: [----------] Global test environment tear-down
11: [==========] 31 tests from 4 test cases ran. (5 ms total)
11: [ PASSED ] 31 tests.
11/33 Test #11: MathUnitTests .................... Passed 0.02 sec
test 12
Start 12: MdrunUtilityUnitTests
12: Test command: /<<PKGBUILDDIR>>/build/basic/bin/mdrunutility-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/MdrunUtilityUnitTests.xml"
12: Test timeout computed to be: 30
12: [==========] Running 17 tests from 1 test case.
12: [----------] Global test environment set-up.
12: [----------] 17 tests from ThreadAffinityTest
12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled
12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported
12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware
12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (1 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset
12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride
12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms)
12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto
12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced
12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms)
12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced
12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms)
12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread
12: NOTE: Affinity setting failed.
12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto
12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced
12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads
12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms)
12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing
12: NOTE: Affinity setting for 1/2 threads failed.
12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms)
12: [----------] 17 tests from ThreadAffinityTest (9 ms total)
12:
12: [----------] Global test environment tear-down
12: [==========] 17 tests from 1 test case ran. (9 ms total)
12: [ PASSED ] 17 tests.
12/33 Test #12: MdrunUtilityUnitTests ............ Passed 0.03 sec
test 13
Start 13: MdrunUtilityMpiUnitTests
13: Test command: /<<PKGBUILDDIR>>/build/basic/bin/mdrunutility-mpi-test "-ntmpi" "4" "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/MdrunUtilityMpiUnitTests.xml"
13: Test timeout computed to be: 30
13: [==========] Running 13 tests from 2 test cases.
13: [----------] Global test environment set-up.
13: [----------] 6 tests from ThreadAffinityMultiRankTest
13: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode
13: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (3 ms)
13: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride
13: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (4 ms)
13: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes
13: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (3 ms)
13: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled
13: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (1 ms)
13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto
13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (2 ms)
13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce
13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms)
13: [----------] 6 tests from ThreadAffinityMultiRankTest (14 ms total)
13:
13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (3 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (2 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (3 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (3 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (2 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (4 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (3 ms)
13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (20 ms total)
13:
13: [----------] Global test environment tear-down
13: [==========] 13 tests from 2 test cases ran. (35 ms total)
13: [ PASSED ] 13 tests.
13/33 Test #13: MdrunUtilityMpiUnitTests ......... Passed 0.05 sec
test 14
Start 14: OnlineHelpUnitTests
14: Test command: /<<PKGBUILDDIR>>/build/basic/bin/onlinehelp-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/OnlineHelpUnitTests.xml"
14: Test timeout computed to be: 30
14: [==========] Running 22 tests from 4 test cases.
14: [----------] Global test environment set-up.
14: [----------] 6 tests from TextTableFormatterTest
14: [ RUN ] TextTableFormatterTest.HandlesBasicCase
14: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles
14: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesIndentation
14: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines
14: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (1 ms)
14: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding
14: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns
14: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms)
14: [----------] 6 tests from TextTableFormatterTest (1 ms total)
14:
14: [----------] 3 tests from HelpManagerTest
14: [ RUN ] HelpManagerTest.HandlesRootTopic
14: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms)
14: [ RUN ] HelpManagerTest.HandlesSubTopics
14: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms)
14: [ RUN ] HelpManagerTest.HandlesInvalidTopics
14: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms)
14: [----------] 3 tests from HelpManagerTest (1 ms total)
14:
14: [----------] 2 tests from HelpTopicFormattingTest
14: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic
14: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms)
14: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics
14: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms)
14: [----------] 2 tests from HelpTopicFormattingTest (0 ms total)
14:
14: [----------] 11 tests from HelpWriterContextTest
14: [ RUN ] HelpWriterContextTest.FormatsParagraphs
14: [ OK ] HelpWriterContextTest.FormatsParagraphs (1 ms)
14: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs
14: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms)
14: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace
14: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsLiteralText
14: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning
14: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation
14: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (1 ms)
14: [ RUN ] HelpWriterContextTest.FormatsBulletList
14: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList
14: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsSimpleTable
14: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsGridTable
14: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsTitles
14: [ OK ] HelpWriterContextTest.FormatsTitles (1 ms)
14: [----------] 11 tests from HelpWriterContextTest (3 ms total)
14:
14: [----------] Global test environment tear-down
14: [==========] 22 tests from 4 test cases ran. (5 ms total)
14: [ PASSED ] 22 tests.
14/33 Test #14: OnlineHelpUnitTests .............. Passed 0.02 sec
test 15
Start 15: OptionsUnitTests
15: Test command: /<<PKGBUILDDIR>>/build/basic/bin/options-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/OptionsUnitTests.xml"
15: Test timeout computed to be: 30
15: [==========] Running 110 tests from 18 test cases.
15: [----------] Global test environment set-up.
15: [----------] 5 tests from AbstractOptionStorageTest
15: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish
15: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms)
15: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval
15: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (1 ms)
15: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition
15: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms)
15: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition
15: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms)
15: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues
15: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms)
15: [----------] 5 tests from AbstractOptionStorageTest (2 ms total)
15:
15: [----------] 8 tests from FileNameOptionTest
15: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension
15: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue
15: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption
15: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension
15: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (1 ms)
15: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension
15: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension
15: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms)
15: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix
15: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms)
15: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix
15: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms)
15: [----------] 8 tests from FileNameOptionTest (1 ms total)
15:
15: [----------] 15 tests from FileNameOptionManagerTest
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension
15: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified
15: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified
15: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified
15: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking
15: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms)
15: [----------] 15 tests from FileNameOptionManagerTest (1 ms total)
15:
15: [----------] 1 test from OptionsTest
15: [ RUN ] OptionsTest.FailsOnNonsafeStorage
15: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms)
15: [----------] 1 test from OptionsTest (0 ms total)
15:
15: [----------] 9 tests from OptionsAssignerTest
15: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter
15: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue
15: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter
15: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter
15: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesMissingValue
15: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesExtraValue
15: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesGroups
15: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesSections
15: [ OK ] OptionsAssignerTest.HandlesSections (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesMultipleSources
15: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms)
15: [----------] 9 tests from OptionsAssignerTest (1 ms total)
15:
15: [----------] 4 tests from OptionsAssignerBooleanTest
15: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue
15: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms)
15: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue
15: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms)
15: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo
15: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms)
15: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue
15: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms)
15: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total)
15:
15: [----------] 13 tests from OptionsAssignerIntegerTest
15: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue
15: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow
15: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue
15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet
15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet
15: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues
15: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.StoresToVector
15: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms)
15: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total)
15:
15: [----------] 5 tests from OptionsAssignerDoubleTest
15: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue
15: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat
15: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue
15: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue
15: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue
15: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms)
15: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total)
15:
15: [----------] 9 tests from OptionsAssignerStringTest
15: [ RUN ] OptionsAssignerStringTest.StoresSingleValue
15: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue
15: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray
15: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue
15: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue
15: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue
15: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue
15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable
15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector
15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms)
15: [----------] 9 tests from OptionsAssignerStringTest (0 ms total)
15:
15: [----------] 6 tests from OptionsAssignerEnumTest
15: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue
15: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues
15: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange
15: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue
15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable
15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector
15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms)
15: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total)
15:
15: [----------] 8 tests from RepeatingOptionSectionTest
15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance
15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption
15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance
15: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue
15: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances
15: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault
15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault
15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections
15: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms)
15: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total)
15:
15: [----------] 1 test from TimeUnitManagerTest
15: [ RUN ] TimeUnitManagerTest.BasicOperations
15: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms)
15: [----------] 1 test from TimeUnitManagerTest (0 ms total)
15:
15: [----------] 4 tests from TimeUnitBehaviorTest
15: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue
15: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms)
15: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues
15: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms)
15: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources
15: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms)
15: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks
15: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms)
15: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total)
15:
15: [----------] 2 tests from TreeValueSupportAssignTest
15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree
15: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms)
15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays
15: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms)
15: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total)
15:
15: [----------] 1 test from TreeValueSupportAssignErrorTest
15: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue
15: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms)
15: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total)
15:
15: [----------] 5 tests from TreeValueSupportCheckTest
15: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty
15: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree
15: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1
15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2
15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue
15: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms)
15: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total)
15:
15: [----------] 6 tests from TreeValueSupportAdjustTest
15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues
15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (1 ms)
15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues
15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues
15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues
15: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues
15: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.OrdersValues
15: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms)
15: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total)
15:
15: [----------] 8 tests from TreeValueSupportTest
15: [ RUN ] TreeValueSupportTest.SupportsBooleanOption
15: [ OK ] TreeValueSupportTest.SupportsBooleanOption (1 ms)
15: [ RUN ] TreeValueSupportTest.SupportsIntegerOption
15: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsInt64Option
15: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsStringOption
15: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsFloatOption
15: [ OK ] TreeValueSupportTest.SupportsFloatOption (1 ms)
15: [ RUN ] TreeValueSupportTest.SupportsDoubleOption
15: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption
15: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsEnumOption
15: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms)
15: [----------] 8 tests from TreeValueSupportTest (2 ms total)
15:
15: [----------] Global test environment tear-down
15: [==========] 110 tests from 18 test cases ran. (11 ms total)
15: [ PASSED ] 110 tests.
15/33 Test #15: OptionsUnitTests ................. Passed 0.04 sec
test 16
Start 16: RandomUnitTests
16: Test command: /<<PKGBUILDDIR>>/build/basic/bin/random-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/RandomUnitTests.xml"
16: Test timeout computed to be: 30
16: [==========] Running 44 tests from 10 test cases.
16: [----------] Global test environment set-up.
16: [----------] 4 tests from ExponentialDistributionTest
16: [ RUN ] ExponentialDistributionTest.Output
16: [ OK ] ExponentialDistributionTest.Output (1 ms)
16: [ RUN ] ExponentialDistributionTest.Logical
16: [ OK ] ExponentialDistributionTest.Logical (0 ms)
16: [ RUN ] ExponentialDistributionTest.Reset
16: [ OK ] ExponentialDistributionTest.Reset (0 ms)
16: [ RUN ] ExponentialDistributionTest.AltParam
16: [ OK ] ExponentialDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from ExponentialDistributionTest (1 ms total)
16:
16: [----------] 4 tests from GammaDistributionTest
16: [ RUN ] GammaDistributionTest.Output
16: [ OK ] GammaDistributionTest.Output (0 ms)
16: [ RUN ] GammaDistributionTest.Logical
16: [ OK ] GammaDistributionTest.Logical (0 ms)
16: [ RUN ] GammaDistributionTest.Reset
16: [ OK ] GammaDistributionTest.Reset (0 ms)
16: [ RUN ] GammaDistributionTest.AltParam
16: [ OK ] GammaDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from GammaDistributionTest (0 ms total)
16:
16: [----------] 4 tests from NormalDistributionTest
16: [ RUN ] NormalDistributionTest.Output
16: [ OK ] NormalDistributionTest.Output (1 ms)
16: [ RUN ] NormalDistributionTest.Logical
16: [ OK ] NormalDistributionTest.Logical (0 ms)
16: [ RUN ] NormalDistributionTest.Reset
16: [ OK ] NormalDistributionTest.Reset (0 ms)
16: [ RUN ] NormalDistributionTest.AltParam
16: [ OK ] NormalDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from NormalDistributionTest (1 ms total)
16:
16: [----------] 1 test from SeedTest
16: [ RUN ] SeedTest.makeRandomSeed
16: [ OK ] SeedTest.makeRandomSeed (0 ms)
16: [----------] 1 test from SeedTest (0 ms total)
16:
16: [----------] 6 tests from TabulatedNormalDistributionTest
16: [ RUN ] TabulatedNormalDistributionTest.Output14
16: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.Output16
16: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14
16: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.Logical
16: [ OK ] TabulatedNormalDistributionTest.Logical (1 ms)
16: [ RUN ] TabulatedNormalDistributionTest.Reset
16: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.AltParam
16: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms)
16: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total)
16:
16: [----------] 1 test from TabulatedNormalDistributionTableTest
16: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties
16: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms)
16: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total)
16:
16: [----------] 6 tests from ThreeFry2x64Test
16: [ RUN ] ThreeFry2x64Test.Logical
16: [ OK ] ThreeFry2x64Test.Logical (0 ms)
16: [ RUN ] ThreeFry2x64Test.InternalCounterSequence
16: [ OK ] ThreeFry2x64Test.InternalCounterSequence (1 ms)
16: [ RUN ] ThreeFry2x64Test.Reseed
16: [ OK ] ThreeFry2x64Test.Reseed (0 ms)
16: [ RUN ] ThreeFry2x64Test.Discard
16: [ OK ] ThreeFry2x64Test.Discard (0 ms)
16: [ RUN ] ThreeFry2x64Test.InvalidCounter
16: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms)
16: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter
16: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms)
16: [----------] 6 tests from ThreeFry2x64Test (1 ms total)
16:
16: [----------] 4 tests from UniformIntDistributionTest
16: [ RUN ] UniformIntDistributionTest.Output
16: [ OK ] UniformIntDistributionTest.Output (0 ms)
16: [ RUN ] UniformIntDistributionTest.Logical
16: [ OK ] UniformIntDistributionTest.Logical (0 ms)
16: [ RUN ] UniformIntDistributionTest.Reset
16: [ OK ] UniformIntDistributionTest.Reset (0 ms)
16: [ RUN ] UniformIntDistributionTest.AltParam
16: [ OK ] UniformIntDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from UniformIntDistributionTest (0 ms total)
16:
16: [----------] 5 tests from UniformRealDistributionTest
16: [ RUN ] UniformRealDistributionTest.GenerateCanonical
16: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms)
16: [ RUN ] UniformRealDistributionTest.Output
16: [ OK ] UniformRealDistributionTest.Output (0 ms)
16: [ RUN ] UniformRealDistributionTest.Logical
16: [ OK ] UniformRealDistributionTest.Logical (0 ms)
16: [ RUN ] UniformRealDistributionTest.Reset
16: [ OK ] UniformRealDistributionTest.Reset (0 ms)
16: [ RUN ] UniformRealDistributionTest.AltParam
16: [ OK ] UniformRealDistributionTest.AltParam (0 ms)
16: [----------] 5 tests from UniformRealDistributionTest (1 ms total)
16:
16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (1 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms)
16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total)
16:
16: [----------] Global test environment tear-down
16: [==========] 44 tests from 10 test cases ran. (9 ms total)
16: [ PASSED ] 44 tests.
16/33 Test #16: RandomUnitTests .................. Passed 0.05 sec
test 17
Start 17: TableUnitTests
17: Test command: /<<PKGBUILDDIR>>/build/basic/bin/table-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/TableUnitTests.xml"
17: Test timeout computed to be: 30
17: [==========] Running 16 tests from 2 test cases.
17: [----------] Global test environment set-up.
17: [----------] 8 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable
17: [ RUN ] SplineTableTest/0.HandlesIncorrectInput
17: [ OK ] SplineTableTest/0.HandlesIncorrectInput (5 ms)
17: [ RUN ] SplineTableTest/0.Sinc
17: [ OK ] SplineTableTest/0.Sinc (2 ms)
17: [ RUN ] SplineTableTest/0.LJ12
17: [ OK ] SplineTableTest/0.LJ12 (50 ms)
17: [ RUN ] SplineTableTest/0.PmeCorrection
17: [ OK ] SplineTableTest/0.PmeCorrection (3 ms)
17: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput
17: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms)
17: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr
17: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (3 ms)
17: [ RUN ] SplineTableTest/0.TwoFunctions
17: [ OK ] SplineTableTest/0.TwoFunctions (99 ms)
17: [ RUN ] SplineTableTest/0.ThreeFunctions
17: [ OK ] SplineTableTest/0.ThreeFunctions (106 ms)
17: [----------] 8 tests from SplineTableTest/0 (270 ms total)
17:
17: [----------] 8 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable
17: [ RUN ] SplineTableTest/1.HandlesIncorrectInput
17: [ OK ] SplineTableTest/1.HandlesIncorrectInput (5 ms)
17: [ RUN ] SplineTableTest/1.Sinc
17: [ OK ] SplineTableTest/1.Sinc (2 ms)
17: [ RUN ] SplineTableTest/1.LJ12
17: [ OK ] SplineTableTest/1.LJ12 (8 ms)
17: [ RUN ] SplineTableTest/1.PmeCorrection
17: [ OK ] SplineTableTest/1.PmeCorrection (4 ms)
17: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput
17: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms)
17: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr
17: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms)
17: [ RUN ] SplineTableTest/1.TwoFunctions
17: [ OK ] SplineTableTest/1.TwoFunctions (18 ms)
17: [ RUN ] SplineTableTest/1.ThreeFunctions
17: [ OK ] SplineTableTest/1.ThreeFunctions (18 ms)
17: [----------] 8 tests from SplineTableTest/1 (58 ms total)
17:
17: [----------] Global test environment tear-down
17: [==========] 16 tests from 2 test cases ran. (328 ms total)
17: [ PASSED ] 16 tests.
17/33 Test #17: TableUnitTests ................... Passed 0.34 sec
test 18
Start 18: TaskAssignmentUnitTests
18: Test command: /<<PKGBUILDDIR>>/build/basic/bin/taskassignment-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/TaskAssignmentUnitTests.xml"
18: Test timeout computed to be: 30
18: [==========] Running 3 tests from 1 test case.
18: [----------] Global test environment set-up.
18: [----------] 3 tests from GpuIdStringHandlingTest
18: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork
18: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (1 ms)
18: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid
18: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms)
18: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow
18: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (1 ms)
18: [----------] 3 tests from GpuIdStringHandlingTest (2 ms total)
18:
18: [----------] Global test environment tear-down
18: [==========] 3 tests from 1 test case ran. (2 ms total)
18: [ PASSED ] 3 tests.
18/33 Test #18: TaskAssignmentUnitTests .......... Passed 0.02 sec
test 19
Start 19: UtilityUnitTests
19: Test command: /<<PKGBUILDDIR>>/build/basic/bin/utility-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/UtilityUnitTests.xml"
19: Test timeout computed to be: 30
19: [==========] Running 307 tests from 49 test cases.
19: [----------] Global test environment set-up.
19: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator<float, gmx::AlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/0 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator<float, gmx::PageAlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/1 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator<int, gmx::AlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (1 ms)
19: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/2 (1 ms total)
19:
19: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator<int, gmx::PageAlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/3 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator<gmx::BasicVector<float>, gmx::AlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/4 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator<gmx::BasicVector<float>, gmx::PageAlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms)
19: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/5 (1 ms total)
19:
19: [----------] 1 test from EmptyArrayRefTest
19: [ RUN ] EmptyArrayRefTest.IsEmpty
19: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms)
19: [----------] 1 test from EmptyArrayRefTest (0 ms total)
19:
19: [----------] 1 test from EmptyConstArrayRefTest
19: [ RUN ] EmptyConstArrayRefTest.IsEmpty
19: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms)
19: [----------] 1 test from EmptyConstArrayRefTest (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef<char>
19: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/0 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef<unsigned char>
19: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/1 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef<int>
19: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/2 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef<unsigned int>
19: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/3 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef<long>
19: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/4 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef<unsigned long>
19: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/5 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef<long long>
19: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/6 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef<unsigned long long>
19: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/7 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef<float>
19: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/8 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef<double>
19: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/9 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef<char const>
19: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/10 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef<unsigned char const>
19: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/11 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef<int const>
19: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/12 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef<unsigned int const>
19: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/13 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef<long const>
19: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/14 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef<unsigned long const>
19: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (1 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/15 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef<long long const>
19: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/16 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef<unsigned long long const>
19: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/17 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef<float const>
19: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (1 ms)
19: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/18 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef<double const>
19: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/19 (0 ms total)
19:
19: [----------] 4 tests from KeyValueTreeSerializerTest
19: [ RUN ] KeyValueTreeSerializerTest.EmptyTree
19: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms)
19: [ RUN ] KeyValueTreeSerializerTest.SimpleObject
19: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms)
19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays
19: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms)
19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects
19: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms)
19: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total)
19:
19: [----------] 6 tests from TreeValueTransformTest
19: [ RUN ] TreeValueTransformTest.SimpleTransforms
19: [ OK ] TreeValueTransformTest.SimpleTransforms (1 ms)
19: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive
19: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms)
19: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject
19: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms)
19: [ RUN ] TreeValueTransformTest.ObjectFromString
19: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms)
19: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings
19: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms)
19: [ RUN ] TreeValueTransformTest.ScopedTransformRules
19: [ OK ] TreeValueTransformTest.ScopedTransformRules (1 ms)
19: [----------] 6 tests from TreeValueTransformTest (2 ms total)
19:
19: [----------] 1 test from TreeValueTransformErrorTest
19: [ RUN ] TreeValueTransformErrorTest.ConversionError
19: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms)
19: [----------] 1 test from TreeValueTransformErrorTest (0 ms total)
19:
19: [----------] 5 tests from LoggerTest
19: [ RUN ] LoggerTest.EmptyLoggerWorks
19: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms)
19: [ RUN ] LoggerTest.LogsToStream
19: [ OK ] LoggerTest.LogsToStream (0 ms)
19: [ RUN ] LoggerTest.LogsToFile
19: [ OK ] LoggerTest.LogsToFile (1 ms)
19: [ RUN ] LoggerTest.LevelFilteringWorks
19: [ OK ] LoggerTest.LevelFilteringWorks (0 ms)
19: [ RUN ] LoggerTest.LogsToMultipleStreams
19: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms)
19: [----------] 5 tests from LoggerTest (1 ms total)
19:
19: [----------] 4 tests from MutexBasicTest
19: [ RUN ] MutexBasicTest.CanBeMade
19: [ OK ] MutexBasicTest.CanBeMade (0 ms)
19: [ RUN ] MutexBasicTest.CanBeLocked
19: [ OK ] MutexBasicTest.CanBeLocked (0 ms)
19: [ RUN ] MutexBasicTest.CanBeTryLocked
19: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms)
19: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard
19: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms)
19: [----------] 4 tests from MutexBasicTest (0 ms total)
19:
19: [----------] 3 tests from MutexTaskTest
19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock
19: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms)
19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread
19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (1 ms)
19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread
19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms)
19: [----------] 3 tests from MutexTaskTest (1 ms total)
19:
19: [----------] 2 tests from PathTest
19: [ RUN ] PathTest.StripSourcePrefixWorks
19: [ OK ] PathTest.StripSourcePrefixWorks (0 ms)
19: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks
19: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (0 ms)
19: [----------] 2 tests from PathTest (0 ms total)
19:
19: [----------] 7 tests from StringUtilityTest
19: [ RUN ] StringUtilityTest.StartsWith
19: [ OK ] StringUtilityTest.StartsWith (0 ms)
19: [ RUN ] StringUtilityTest.EndsWith
19: [ OK ] StringUtilityTest.EndsWith (0 ms)
19: [ RUN ] StringUtilityTest.StripSuffixIfPresent
19: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms)
19: [ RUN ] StringUtilityTest.StripString
19: [ OK ] StringUtilityTest.StripString (0 ms)
19: [ RUN ] StringUtilityTest.SplitString
19: [ OK ] StringUtilityTest.SplitString (0 ms)
19: [ RUN ] StringUtilityTest.SplitDelimitedString
19: [ OK ] StringUtilityTest.SplitDelimitedString (1 ms)
19: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString
19: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms)
19: [----------] 7 tests from StringUtilityTest (2 ms total)
19:
19: [----------] 2 tests from FormatStringTest
19: [ RUN ] FormatStringTest.HandlesBasicFormatting
19: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms)
19: [ RUN ] FormatStringTest.HandlesLongStrings
19: [ OK ] FormatStringTest.HandlesLongStrings (0 ms)
19: [----------] 2 tests from FormatStringTest (0 ms total)
19:
19: [----------] 1 test from StringFormatterTest
19: [ RUN ] StringFormatterTest.HandlesBasicFormatting
19: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms)
19: [----------] 1 test from StringFormatterTest (0 ms total)
19:
19: [----------] 1 test from formatAndJoinTest
19: [ RUN ] formatAndJoinTest.Works
19: [ OK ] formatAndJoinTest.Works (0 ms)
19: [----------] 1 test from formatAndJoinTest (0 ms total)
19:
19: [----------] 1 test from JoinStringsTest
19: [ RUN ] JoinStringsTest.Works
19: [ OK ] JoinStringsTest.Works (0 ms)
19: [----------] 1 test from JoinStringsTest (0 ms total)
19:
19: [----------] 6 tests from ReplaceAllTest
19: [ RUN ] ReplaceAllTest.HandlesEmptyStrings
19: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesNoMatches
19: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds
19: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesMultipleMatches
19: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesWordBoundaries
19: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches
19: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms)
19: [----------] 6 tests from ReplaceAllTest (1 ms total)
19:
19: [----------] 10 tests from TextLineWrapperTest
19: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings
19: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace
19: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines
19: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms)
19: [ RUN ] TextLineWrapperTest.WrapsCorrectly
19: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms)
19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks
19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesIndent
19: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines
19: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesHangingIndent
19: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter
19: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms)
19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace
19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms)
19: [----------] 10 tests from TextLineWrapperTest (1 ms total)
19:
19: [----------] 6 tests from TextWriterTest
19: [ RUN ] TextWriterTest.WritesLines
19: [ OK ] TextWriterTest.WritesLines (0 ms)
19: [ RUN ] TextWriterTest.WritesLinesInParts
19: [ OK ] TextWriterTest.WritesLinesInParts (0 ms)
19: [ RUN ] TextWriterTest.WritesWrappedLines
19: [ OK ] TextWriterTest.WritesWrappedLines (1 ms)
19: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper
19: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms)
19: [ RUN ] TextWriterTest.TracksNewlines
19: [ OK ] TextWriterTest.TracksNewlines (0 ms)
19: [ RUN ] TextWriterTest.PreservesTrailingWhitespace
19: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms)
19: [----------] 6 tests from TextWriterTest (1 ms total)
19:
19: [----------] 1 test from TypeTraitsTest
19: [ RUN ] TypeTraitsTest.IsIntegralConstant
19: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms)
19: [----------] 1 test from TypeTraitsTest (0 ms total)
19:
19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms)
19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total)
19:
19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms)
19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total)
19:
19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms)
19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total)
19:
19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (1 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms)
19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total)
19:
19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (1 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (1 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms)
19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (2 ms total)
19:
19: [----------] Global test environment tear-down
19: [==========] 307 tests from 49 test cases ran. (23 ms total)
19: [ PASSED ] 307 tests.
19/33 Test #19: UtilityUnitTests ................. Passed 0.08 sec
test 20
Start 20: FileIOTests
20: Test command: /<<PKGBUILDDIR>>/build/basic/bin/fileio-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/FileIOTests.xml"
20: Test timeout computed to be: 30
20: [==========] Running 15 tests from 3 test cases.
20: [----------] Global test environment set-up.
20: [----------] 9 tests from ReadTest
20: [ RUN ] ReadTest.get_eint_ReadsInteger
20: [ OK ] ReadTest.get_eint_ReadsInteger (0 ms)
20: [ RUN ] ReadTest.get_eint_WarnsAboutFloat
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side '0.8' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint_WarnsAboutFloat (1 ms)
20: [ RUN ] ReadTest.get_eint_WarnsAboutString
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side 'hello' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms)
20: [ RUN ] ReadTest.get_eint64_ReadsInteger
20: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms)
20: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side '0.8' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms)
20: [ RUN ] ReadTest.get_eint64_WarnsAboutString
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side 'hello' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms)
20: [ RUN ] ReadTest.get_ereal_ReadsInteger
20: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms)
20: [ RUN ] ReadTest.get_ereal_ReadsFloat
20: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms)
20: [ RUN ] ReadTest.get_ereal_WarnsAboutString
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side 'hello' for parameter 'test' in parameter file is not a
20: real value
20:
20:
20: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms)
20: [----------] 9 tests from ReadTest (1 ms total)
20:
20: [----------] 2 tests from TngTest
20: [ RUN ] TngTest.CanOpenTngFile
20: [ OK ] TngTest.CanOpenTngFile (0 ms)
20: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal
20: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms)
20: [----------] 2 tests from TngTest (0 ms total)
20:
20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms)
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms)
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (5 ms)
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms)
20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (8 ms total)
20:
20: [----------] Global test environment tear-down
20: [==========] 15 tests from 3 test cases ran. (9 ms total)
20: [ PASSED ] 15 tests.
20/33 Test #20: FileIOTests ...................... Passed 0.03 sec
test 21
Start 21: PullTest
21: Test command: /<<PKGBUILDDIR>>/build/basic/bin/pull-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/PullTest.xml"
21: Test timeout computed to be: 30
21: [==========] Running 5 tests from 1 test case.
21: [----------] Global test environment set-up.
21: [----------] 5 tests from PullTest
21: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox
21: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox
21: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXyzTricBox
21: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXyzLongBox
21: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXySkewedBox
21: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms)
21: [----------] 5 tests from PullTest (0 ms total)
21:
21: [----------] Global test environment tear-down
21: [==========] 5 tests from 1 test case ran. (0 ms total)
21: [ PASSED ] 5 tests.
21/33 Test #21: PullTest ......................... Passed 0.02 sec
test 22
Start 22: AwhTest
22: Test command: /<<PKGBUILDDIR>>/build/basic/bin/awh-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/AwhTest.xml"
22: Test timeout computed to be: 30
22: [==========] Running 12 tests from 4 test cases.
22: [----------] Global test environment set-up.
22: [----------] 1 test from BiasTest
22: [ RUN ] BiasTest.DetectsCovering
22: [ OK ] BiasTest.DetectsCovering (1 ms)
22: [----------] 1 test from BiasTest (2 ms total)
22:
22: [----------] 1 test from gridTest
22: [ RUN ] gridTest.neighborhood
22: [ OK ] gridTest.neighborhood (2 ms)
22: [----------] 1 test from gridTest (2 ms total)
22:
22: [----------] 8 tests from WithParameters/BiasTest
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms)
22: [----------] 8 tests from WithParameters/BiasTest (7 ms total)
22:
22: [----------] 2 tests from WithParameters/BiasStateTest
22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0
22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms)
22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1
22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms)
22: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total)
22:
22: [----------] Global test environment tear-down
22: [==========] 12 tests from 4 test cases ran. (12 ms total)
22: [ PASSED ] 12 tests.
22/33 Test #22: AwhTest .......................... Passed 0.03 sec
test 23
Start 23: SimdUnitTests
23: Test command: /<<PKGBUILDDIR>>/build/basic/bin/simd-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/SimdUnitTests.xml"
23: Test timeout computed to be: 30
23: [==========] Running 86 tests from 3 test cases.
23: [----------] Global test environment set-up.
23: [----------] 41 tests from SimdScalarTest
23: [ RUN ] SimdScalarTest.load
23: [ OK ] SimdScalarTest.load (0 ms)
23: [ RUN ] SimdScalarTest.loadU
23: [ OK ] SimdScalarTest.loadU (0 ms)
23: [ RUN ] SimdScalarTest.store
23: [ OK ] SimdScalarTest.store (0 ms)
23: [ RUN ] SimdScalarTest.storeU
23: [ OK ] SimdScalarTest.storeU (0 ms)
23: [ RUN ] SimdScalarTest.setZero
23: [ OK ] SimdScalarTest.setZero (0 ms)
23: [ RUN ] SimdScalarTest.andNot
23: [ OK ] SimdScalarTest.andNot (0 ms)
23: [ RUN ] SimdScalarTest.fma
23: [ OK ] SimdScalarTest.fma (0 ms)
23: [ RUN ] SimdScalarTest.fms
23: [ OK ] SimdScalarTest.fms (0 ms)
23: [ RUN ] SimdScalarTest.fnma
23: [ OK ] SimdScalarTest.fnma (0 ms)
23: [ RUN ] SimdScalarTest.fnms
23: [ OK ] SimdScalarTest.fnms (0 ms)
23: [ RUN ] SimdScalarTest.maskAdd
23: [ OK ] SimdScalarTest.maskAdd (0 ms)
23: [ RUN ] SimdScalarTest.maskzMul
23: [ OK ] SimdScalarTest.maskzMul (0 ms)
23: [ RUN ] SimdScalarTest.maskzFma
23: [ OK ] SimdScalarTest.maskzFma (0 ms)
23: [ RUN ] SimdScalarTest.abs
23: [ OK ] SimdScalarTest.abs (0 ms)
23: [ RUN ] SimdScalarTest.max
23: [ OK ] SimdScalarTest.max (0 ms)
23: [ RUN ] SimdScalarTest.min
23: [ OK ] SimdScalarTest.min (0 ms)
23: [ RUN ] SimdScalarTest.round
23: [ OK ] SimdScalarTest.round (0 ms)
23: [ RUN ] SimdScalarTest.trunc
23: [ OK ] SimdScalarTest.trunc (0 ms)
23: [ RUN ] SimdScalarTest.reduce
23: [ OK ] SimdScalarTest.reduce (0 ms)
23: [ RUN ] SimdScalarTest.testBits
23: [ OK ] SimdScalarTest.testBits (0 ms)
23: [ RUN ] SimdScalarTest.anyTrue
23: [ OK ] SimdScalarTest.anyTrue (0 ms)
23: [ RUN ] SimdScalarTest.selectByMask
23: [ OK ] SimdScalarTest.selectByMask (0 ms)
23: [ RUN ] SimdScalarTest.selectByNotMask
23: [ OK ] SimdScalarTest.selectByNotMask (0 ms)
23: [ RUN ] SimdScalarTest.blend
23: [ OK ] SimdScalarTest.blend (0 ms)
23: [ RUN ] SimdScalarTest.cvtR2I
23: [ OK ] SimdScalarTest.cvtR2I (0 ms)
23: [ RUN ] SimdScalarTest.cvttR2I
23: [ OK ] SimdScalarTest.cvttR2I (0 ms)
23: [ RUN ] SimdScalarTest.cvtI2R
23: [ OK ] SimdScalarTest.cvtI2R (0 ms)
23: [ RUN ] SimdScalarTest.cvtF2D
23: [ OK ] SimdScalarTest.cvtF2D (0 ms)
23: [ RUN ] SimdScalarTest.cvtD2D
23: [ OK ] SimdScalarTest.cvtD2D (0 ms)
23: [ RUN ] SimdScalarTest.loadI
23: [ OK ] SimdScalarTest.loadI (0 ms)
23: [ RUN ] SimdScalarTest.loadUI
23: [ OK ] SimdScalarTest.loadUI (0 ms)
23: [ RUN ] SimdScalarTest.storeI
23: [ OK ] SimdScalarTest.storeI (0 ms)
23: [ RUN ] SimdScalarTest.storeUI
23: [ OK ] SimdScalarTest.storeUI (0 ms)
23: [ RUN ] SimdScalarTest.andNotI
23: [ OK ] SimdScalarTest.andNotI (0 ms)
23: [ RUN ] SimdScalarTest.testBitsI
23: [ OK ] SimdScalarTest.testBitsI (0 ms)
23: [ RUN ] SimdScalarTest.selectByMaskI
23: [ OK ] SimdScalarTest.selectByMaskI (0 ms)
23: [ RUN ] SimdScalarTest.selectByNotMaskI
23: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms)
23: [ RUN ] SimdScalarTest.blendI
23: [ OK ] SimdScalarTest.blendI (0 ms)
23: [ RUN ] SimdScalarTest.cvtB2IB
23: [ OK ] SimdScalarTest.cvtB2IB (0 ms)
23: [ RUN ] SimdScalarTest.cvtIB2B
23: [ OK ] SimdScalarTest.cvtIB2B (0 ms)
23: [ RUN ] SimdScalarTest.expandScalarsToTriplets
23: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms)
23: [----------] 41 tests from SimdScalarTest (2 ms total)
23:
23: [----------] 8 tests from SimdScalarUtilTest
23: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU
23: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms)
23: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU
23: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms)
23: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU
23: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms)
23: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum
23: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms)
23: [----------] 8 tests from SimdScalarUtilTest (0 ms total)
23:
23: [----------] 37 tests from SimdScalarMathTest
23: [ RUN ] SimdScalarMathTest.copysign
23: [ OK ] SimdScalarMathTest.copysign (0 ms)
23: [ RUN ] SimdScalarMathTest.invsqrtPair
23: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms)
23: [ RUN ] SimdScalarMathTest.inv
23: [ OK ] SimdScalarMathTest.inv (0 ms)
23: [ RUN ] SimdScalarMathTest.maskzInvsqrt
23: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms)
23: [ RUN ] SimdScalarMathTest.log
23: [ OK ] SimdScalarMathTest.log (0 ms)
23: [ RUN ] SimdScalarMathTest.exp2
23: [ OK ] SimdScalarMathTest.exp2 (0 ms)
23: [ RUN ] SimdScalarMathTest.exp
23: [ OK ] SimdScalarMathTest.exp (0 ms)
23: [ RUN ] SimdScalarMathTest.erf
23: [ OK ] SimdScalarMathTest.erf (0 ms)
23: [ RUN ] SimdScalarMathTest.erfc
23: [ OK ] SimdScalarMathTest.erfc (0 ms)
23: [ RUN ] SimdScalarMathTest.sincos
23: [ OK ] SimdScalarMathTest.sincos (0 ms)
23: [ RUN ] SimdScalarMathTest.sin
23: [ OK ] SimdScalarMathTest.sin (0 ms)
23: [ RUN ] SimdScalarMathTest.cos
23: [ OK ] SimdScalarMathTest.cos (1 ms)
23: [ RUN ] SimdScalarMathTest.tan
23: [ OK ] SimdScalarMathTest.tan (0 ms)
23: [ RUN ] SimdScalarMathTest.asin
23: [ OK ] SimdScalarMathTest.asin (0 ms)
23: [ RUN ] SimdScalarMathTest.acos
23: [ OK ] SimdScalarMathTest.acos (0 ms)
23: [ RUN ] SimdScalarMathTest.atan
23: [ OK ] SimdScalarMathTest.atan (0 ms)
23: [ RUN ] SimdScalarMathTest.atan2
23: [ OK ] SimdScalarMathTest.atan2 (0 ms)
23: [ RUN ] SimdScalarMathTest.pmeForceCorrection
23: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms)
23: [ RUN ] SimdScalarMathTest.pmePotentialCorrection
23: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms)
23: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy
23: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.invSingleAccuracy
23: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy
23: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.logSingleAccuracy
23: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy
23: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.expSingleAccuracy
23: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.erfSingleAccuracy
23: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy
23: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy
23: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.sinSingleAccuracy
23: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.cosSingleAccuracy
23: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.tanSingleAccuracy
23: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.asinSingleAccuracy
23: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.acosSingleAccuracy
23: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.atanSingleAccuracy
23: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy
23: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy
23: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy
23: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms)
23: [----------] 37 tests from SimdScalarMathTest (1 ms total)
23:
23: [----------] Global test environment tear-down
23: [==========] 86 tests from 3 test cases ran. (3 ms total)
23: [ PASSED ] 86 tests.
23/33 Test #23: SimdUnitTests .................... Passed 0.03 sec
test 24
Start 24: GmxAnaTest
24: Test command: /<<PKGBUILDDIR>>/build/basic/bin/gmxana-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/GmxAnaTest.xml"
24: Test timeout computed to be: 600
24: [==========] Running 12 tests from 2 test cases.
24: [----------] Global test environment set-up.
24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group: trr version: GMX_trn_file (single precision)
24:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (4 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (4 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (3 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group: Reading frames from gro file '', 6 atoms.
24:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (3 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group: Reading frames from pdb file
Reading frame 0 time 0.000 't= 0.00000', 6 atoms
24:
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (3 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (4 ms)
24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (22 ms total)
24:
24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group:
Reading frame 0 time 0.000 -> frame 0 time 0.000
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (6 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group:
Reading frame 0 time 0.000
24: Precision of /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests/spc2-traj.tng is 0.001 (nm)
24: -> frame 0 time 0.000
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (6 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group:
Reading frame 0 time 0.000 -> frame 0 time 0.000
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (5 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group: Reading frames from gro file '', 6 atoms.
24:
Reading frame 0 time 0.000
24: Precision of /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests/spc2-traj.gro is 0.001 (nm)
24: -> frame 0 time 0.000
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (5 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group: Reading frames from pdb file
Reading frame 0 time 0.000
24: Precision of /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests/spc2-traj.pdb is 0.0001 (nm)
24: -> frame 0 time 0.000
't= 0.00000', 6 atoms
24:
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (5 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group:
Reading frame 0 time 0.000 -> frame 0 time 0.000
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (5 ms)
24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (32 ms total)
24:
24: [----------] Global test environment tear-down
24: [==========] 12 tests from 2 test cases ran. (54 ms total)
24: [ PASSED ] 12 tests.
24/33 Test #24: GmxAnaTest ....................... Passed 0.07 sec
test 25
Start 25: GmxPreprocessTests
25: Test command: /<<PKGBUILDDIR>>/build/basic/bin/gmxpreprocess-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/GmxPreprocessTests.xml"
25: Test timeout computed to be: 30
25: [==========] Running 20 tests from 4 test cases.
25: [----------] Global test environment set-up.
25: [----------] 4 tests from GenconfTest
25: [ RUN ] GenconfTest.nbox_Works
25: [ OK ] GenconfTest.nbox_Works (1 ms)
25: [ RUN ] GenconfTest.nbox_norenumber_Works
25: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms)
25: [ RUN ] GenconfTest.nbox_dist_Works
25: [ OK ] GenconfTest.nbox_dist_Works (1 ms)
25: [ RUN ] GenconfTest.nbox_rot_Works
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: [ OK ] GenconfTest.nbox_rot_Works (2 ms)
25: [----------] 4 tests from GenconfTest (5 ms total)
25:
25: [----------] 5 tests from InsertMoleculesTest
25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration
25: Reading solute configuration
25: Test system for solvate/insert-molecules
25: Containing 6 atoms in 2 residues
25: Reading molecule configuration
25: test two-residue molecule for insertion
25: Containing 2 atoms in 2 residues
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Using random seed 1997
25:
Try 1 success (now 8 atoms)!
25:
25: Added 1 molecules (out of 1 requested)
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro
25:
25: Output configuration contains 8 atoms in 4 residues
25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (4 ms)
25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox
25: Reading molecule configuration
25: test two-residue molecule for insertion
25: Containing 2 atoms in 2 residues
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Using random seed 1997
25:
Try 1 success (now 2 atoms)!
25:
Try 2 success (now 4 atoms)!
25:
Try 3 success (now 6 atoms)!
25:
Try 4 success (now 8 atoms)!
25:
Try 5 success (now 10 atoms)!
25:
25: Added 5 molecules (out of 5 requested)
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEmptyBox_out.gro
25:
25: Output configuration contains 10 atoms in 10 residues
25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (3 ms)
25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox
25: Reading solute configuration
25: Test system for solvate/insert-molecules
25: Containing 6 atoms in 2 residues
25: Reading molecule configuration
25: test molecule for insertion
25: Containing 2 atoms in 1 residues
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Using random seed 1997
25:
Try 1 success (now 8 atoms)!
25:
Try 2 success (now 10 atoms)!
25:
25: Added 2 molecules (out of 2 requested)
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro
25:
25: Output configuration contains 10 atoms in 4 residues
25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (4 ms)
25: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement
25: Reading solute configuration
25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984
25: Containing 648 atoms in 216 residues
25: Reading molecule configuration
25: test molecule for insertion
25: Containing 2 atoms in 1 residues
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Using random seed 1997
25:
Try 1 success (now 650 atoms)!
25:
Try 2 success (now 652 atoms)!
25:
Try 3 success (now 654 atoms)!
25:
Try 4 success (now 656 atoms)!
25:
25: Added 4 molecules (out of 4 requested)
25: Replaced 8 residues (24 atoms)
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro
25:
25: Output configuration contains 632 atoms in 212 residues
25: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (15 ms)
25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions
25: Reading molecule configuration
25: test molecule for insertion at origin
25: Containing 2 atoms in 1 residues
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Using random seed 1997
25: Read 4 positions from file /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_5.dat
25:
25:
Try 1 success (now 2 atoms)!
25:
Try 2 success (now 4 atoms)!
25:
Try 3
Try 4
Try 5
Try 6
Try 7
Try 8
Try 9
Try 10
Try 11
Try 12 skipped position (0.990, 2.010, 3.000)
25:
Try 13 success (now 6 atoms)!
25:
25: Added 3 molecules (out of 4 requested)
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro
25:
25: Output configuration contains 6 atoms in 3 residues
25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (4 ms)
25: [----------] 5 tests from InsertMoleculesTest (30 ms total)
25:
25: [----------] 7 tests from GetIrTest
25: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp, line 12]:
25: /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: Ignoring obsolete mdp entry 'title'
25: Replacing old mdp entry 'xtc_grps' by 'compressed-x-grps'
25: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (6 ms)
25: [ RUN ] GetIrTest.HandlesOnlyCutoffScheme
25: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (6 ms)
25: [ RUN ] GetIrTest.UserErrorsSilentlyTolerated
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp, line 5]:
25: /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (6 ms)
25: [ RUN ] GetIrTest.EmptyInputWorks
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp, line 1]:
25: /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: [ OK ] GetIrTest.EmptyInputWorks (5 ms)
25: [ RUN ] GetIrTest.ProducesOutputFromElectricField
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp, line 2]:
25: /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: [ OK ] GetIrTest.ProducesOutputFromElectricField (5 ms)
25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldPulsed
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp, line 2]:
25: /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (6 ms)
25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldOscillating
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp, line 2]:
25: /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (6 ms)
25: [----------] 7 tests from GetIrTest (41 ms total)
25:
25: [----------] 4 tests from SolvateTest
25: [ RUN ] SolvateTest.cs_box_Works
25: Reading solvent configuration
25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984
25: Containing 648 atoms in 216 residues
25:
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Generating solvent configuration
25: Will generate new solvent configuration of 1x1x1 boxes
25: Solvent box contains 270 atoms in 90 residues
25: Removed 129 solvent atoms due to solvent-solvent overlap
25: Sorting configuration
25: Found 1 molecule type:
25: SOL ( 3 atoms): 47 residues
25: Generated solvent containing 141 atoms in 47 residues
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_box_Works_out.gro
25:
25: Output configuration contains 141 atoms in 47 residues
25: Volume : 1.331 (nm^3)
25: Density : 1056.36 (g/l)
25: Number of SOL molecules: 47
25:
25: [ OK ] SolvateTest.cs_box_Works (17 ms)
25: [ RUN ] SolvateTest.cs_cp_Works
25: Reading solute configuration
25: Test system for solvate/insert-molecules
25: Containing 6 atoms in 2 residues
25: Reading solvent configuration
25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984
25: Containing 648 atoms in 216 residues
25:
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Generating solvent configuration
25: Will generate new solvent configuration of 2x2x2 boxes
25: Solvent box contains 3660 atoms in 1220 residues
25: Removed 987 solvent atoms due to solvent-solvent overlap
25: Removed 15 solvent atoms due to solute-solvent overlap
25: Sorting configuration
25: Found 1 molecule type:
25: SOL ( 3 atoms): 886 residues
25: Generated solvent containing 2658 atoms in 886 residues
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_Works_out.gro
25:
25: Output configuration contains 2664 atoms in 888 residues
25: Volume : 27.2709 (nm^3)
25: Density : 974.777 (g/l)
25: Number of SOL molecules: 887
25:
25: [ OK ] SolvateTest.cs_cp_Works (64 ms)
25: [ RUN ] SolvateTest.cs_cp_p_Works
25: Reading solute configuration
25: Test system for solvate/insert-molecules
25: Containing 6 atoms in 2 residues
25: Reading solvent configuration
25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984
25: Containing 648 atoms in 216 residues
25:
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Generating solvent configuration
25: Will generate new solvent configuration of 2x2x2 boxes
25: Solvent box contains 3660 atoms in 1220 residues
25: Removed 987 solvent atoms due to solvent-solvent overlap
25: Removed 15 solvent atoms due to solute-solvent overlap
25: Sorting configuration
25: Found 1 molecule type:
25: SOL ( 3 atoms): 886 residues
25: Generated solvent containing 2658 atoms in 886 residues
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_out.gro
25:
25: Output configuration contains 2664 atoms in 888 residues
25: Volume : 27.2709 (nm^3)
25: Density : 974.777 (g/l)
25: Number of SOL molecules: 887
25:
25: Processing topology
25: Adding line for 886 solvent molecules to topology file (/<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works.top)
25: [ OK ] SolvateTest.cs_cp_p_Works (67 ms)
25: [ RUN ] SolvateTest.shell_Works
25: Reading solute configuration
25: Test system for solvate/insert-molecules
25: Containing 6 atoms in 2 residues
25: Reading solvent configuration
25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984
25: Containing 648 atoms in 216 residues
25:
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Generating solvent configuration
25: Will generate new solvent configuration of 2x2x2 boxes
25: Solvent box contains 3660 atoms in 1220 residues
25: Removed 987 solvent atoms due to solvent-solvent overlap
25: Removed 1902 solvent atoms more than 1.000000 nm from solute.
25: Removed 15 solvent atoms due to solute-solvent overlap
25: Sorting configuration
25: Found 1 molecule type:
25: SOL ( 3 atoms): 252 residues
25: Generated solvent containing 756 atoms in 252 residues
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_shell_Works_out.gro
25:
25: Output configuration contains 762 atoms in 254 residues
25: Volume : 27.2709 (nm^3)
25: Density : 279.3 (g/l)
25: Number of SOL molecules: 253
25:
25: [ OK ] SolvateTest.shell_Works (37 ms)
25: [----------] 4 tests from SolvateTest (185 ms total)
25:
25: [----------] Global test environment tear-down
25: [==========] 20 tests from 4 test cases ran. (262 ms total)
25: [ PASSED ] 20 tests.
25/33 Test #25: GmxPreprocessTests ............... Passed 0.28 sec
test 26
Start 26: CorrelationsTest
26: Test command: /<<PKGBUILDDIR>>/build/basic/bin/correlations-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/CorrelationsTest.xml"
26: Test timeout computed to be: 30
26: [==========] Running 21 tests from 3 test cases.
26: [----------] Global test environment set-up.
26: [----------] 10 tests from AutocorrTest
26: [ RUN ] AutocorrTest.EacNormal
26: [ OK ] AutocorrTest.EacNormal (18 ms)
26: [ RUN ] AutocorrTest.EacNoNormalize
26: [ OK ] AutocorrTest.EacNoNormalize (12 ms)
26: [ RUN ] AutocorrTest.EacCos
26: [ OK ] AutocorrTest.EacCos (22 ms)
26: [ RUN ] AutocorrTest.EacVector
26: [ OK ] AutocorrTest.EacVector (33 ms)
26: [ RUN ] AutocorrTest.EacRcross
26: [ OK ] AutocorrTest.EacRcross (2 ms)
26: [ RUN ] AutocorrTest.EacP0
26: [ OK ] AutocorrTest.EacP0 (34 ms)
26: [ RUN ] AutocorrTest.EacP1
26: [ OK ] AutocorrTest.EacP1 (35 ms)
26: [ RUN ] AutocorrTest.EacP2
26: [ OK ] AutocorrTest.EacP2 (74 ms)
26: [ RUN ] AutocorrTest.EacP3
26: [ OK ] AutocorrTest.EacP3 (10 ms)
26: [ RUN ] AutocorrTest.EacP4
26: [ OK ] AutocorrTest.EacP4 (38 ms)
26: [----------] 10 tests from AutocorrTest (284 ms total)
26:
26: [----------] 1 test from ManyAutocorrelationTest
26: [ RUN ] ManyAutocorrelationTest.Empty
26: [ OK ] ManyAutocorrelationTest.Empty (1 ms)
26: [----------] 1 test from ManyAutocorrelationTest (1 ms total)
26:
26: [----------] 10 tests from ExpfitTest
26: [ RUN ] ExpfitTest.EffnEXP1
26: [ OK ] ExpfitTest.EffnEXP1 (2 ms)
26: [ RUN ] ExpfitTest.EffnEXP2
26: [ OK ] ExpfitTest.EffnEXP2 (4 ms)
26: [ RUN ] ExpfitTest.EffnEXPEXP
26: [ OK ] ExpfitTest.EffnEXPEXP (6 ms)
26: [ RUN ] ExpfitTest.EffnEXP5
26: [ OK ] ExpfitTest.EffnEXP5 (17 ms)
26: [ RUN ] ExpfitTest.EffnEXP7
26: [ OK ] ExpfitTest.EffnEXP7 (15 ms)
26: [ RUN ] ExpfitTest.EffnEXP9
26: [ OK ] ExpfitTest.EffnEXP9 (92 ms)
26: [ RUN ] ExpfitTest.EffnERF
26: [ OK ] ExpfitTest.EffnERF (9 ms)
26: [ RUN ] ExpfitTest.EffnERREST
26: [ OK ] ExpfitTest.EffnERREST (2 ms)
26: [ RUN ] ExpfitTest.EffnVAC
26: [ OK ] ExpfitTest.EffnVAC (30 ms)
26: [ RUN ] ExpfitTest.EffnPRES
26: [ OK ] ExpfitTest.EffnPRES (61 ms)
26: [----------] 10 tests from ExpfitTest (238 ms total)
26:
26: [----------] Global test environment tear-down
26: [==========] 21 tests from 3 test cases ran. (540 ms total)
26: [ PASSED ] 21 tests.
26/33 Test #26: CorrelationsTest ................. Passed 0.56 sec
test 27
Start 27: AnalysisDataUnitTests
27: Test command: /<<PKGBUILDDIR>>/build/basic/bin/analysisdata-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/AnalysisDataUnitTests.xml"
27: Test timeout computed to be: 30
27: [==========] Running 69 tests from 14 test cases.
27: [----------] Global test environment set-up.
27: [----------] 3 tests from AnalysisDataInitializationTest
27: [ RUN ] AnalysisDataInitializationTest.BasicInitialization
27: [ OK ] AnalysisDataInitializationTest.BasicInitialization (0 ms)
27: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules
27: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (0 ms)
27: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules
27: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms)
27: [----------] 3 tests from AnalysisDataInitializationTest (1 ms total)
27:
27: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData
27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (3 ms)
27: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (3 ms)
27: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly
27: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (3 ms)
27: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (3 ms)
27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames
27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (5 ms)
27: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks
27: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (1 ms)
27: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData
27: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (2 ms)
27: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks
27: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (2 ms)
27: [----------] 8 tests from AnalysisDataCommonTest/0 (23 ms total)
27:
27: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData
27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (3 ms)
27: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly
27: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames
27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (6 ms)
27: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks
27: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (2 ms)
27: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData
27: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (2 ms)
27: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks
27: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (2 ms)
27: [----------] 8 tests from AnalysisDataCommonTest/1 (27 ms total)
27:
27: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData
27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (5 ms)
27: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly
27: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (5 ms)
27: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames
27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (7 ms)
27: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks
27: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (2 ms)
27: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData
27: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (3 ms)
27: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks
27: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (2 ms)
27: [----------] 8 tests from AnalysisDataCommonTest/2 (32 ms total)
27:
27: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData
27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (5 ms)
27: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly
27: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames
27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (7 ms)
27: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks
27: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (2 ms)
27: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData
27: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (3 ms)
27: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks
27: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (2 ms)
27: [----------] 8 tests from AnalysisDataCommonTest/3 (32 ms total)
27:
27: [----------] 4 tests from AnalysisArrayDataTest
27: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly
27: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (4 ms)
27: [ RUN ] AnalysisArrayDataTest.StorageWorks
27: [ OK ] AnalysisArrayDataTest.StorageWorks (2 ms)
27: [ RUN ] AnalysisArrayDataTest.CanSetXAxis
27: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms)
27: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount
27: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms)
27: [----------] 4 tests from AnalysisArrayDataTest (7 ms total)
27:
27: [----------] 6 tests from AverageModuleTest
27: [ RUN ] AverageModuleTest.BasicTest
27: [ OK ] AverageModuleTest.BasicTest (4 ms)
27: [ RUN ] AverageModuleTest.HandlesMultipointData
27: [ OK ] AverageModuleTest.HandlesMultipointData (4 ms)
27: [ RUN ] AverageModuleTest.HandlesMultipleDataSets
27: [ OK ] AverageModuleTest.HandlesMultipleDataSets (5 ms)
27: [ RUN ] AverageModuleTest.HandlesDataSetAveraging
27: [ OK ] AverageModuleTest.HandlesDataSetAveraging (5 ms)
27: [ RUN ] AverageModuleTest.CanCustomizeXAxis
27: [ OK ] AverageModuleTest.CanCustomizeXAxis (4 ms)
27: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis
27: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (4 ms)
27: [----------] 6 tests from AverageModuleTest (26 ms total)
27:
27: [----------] 2 tests from FrameAverageModuleTest
27: [ RUN ] FrameAverageModuleTest.BasicTest
27: [ OK ] FrameAverageModuleTest.BasicTest (4 ms)
27: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets
27: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (5 ms)
27: [----------] 2 tests from FrameAverageModuleTest (9 ms total)
27:
27: [----------] 7 tests from AnalysisHistogramSettingsTest
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBins (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange (0 ms)
27: [----------] 7 tests from AnalysisHistogramSettingsTest (1 ms total)
27:
27: [----------] 2 tests from SimpleHistogramModuleTest
27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly
27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (6 ms)
27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll
27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (6 ms)
27: [----------] 2 tests from SimpleHistogramModuleTest (12 ms total)
27:
27: [----------] 3 tests from WeightedHistogramModuleTest
27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly
27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (7 ms)
27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll
27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (6 ms)
27: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets
27: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (7 ms)
27: [----------] 3 tests from WeightedHistogramModuleTest (20 ms total)
27:
27: [----------] 3 tests from BinAverageModuleTest
27: [ RUN ] BinAverageModuleTest.ComputesCorrectly
27: [ OK ] BinAverageModuleTest.ComputesCorrectly (5 ms)
27: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll
27: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (5 ms)
27: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets
27: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (5 ms)
27: [----------] 3 tests from BinAverageModuleTest (16 ms total)
27:
27: [----------] 4 tests from AbstractAverageHistogramTest
27: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly
27: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (9 ms)
27: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram
27: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (7 ms)
27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth
27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (6 ms)
27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins
27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (6 ms)
27: [----------] 4 tests from AbstractAverageHistogramTest (29 ms total)
27:
27: [----------] 3 tests from LifetimeModuleTest
27: [ RUN ] LifetimeModuleTest.BasicTest
27: [ OK ] LifetimeModuleTest.BasicTest (4 ms)
27: [ RUN ] LifetimeModuleTest.CumulativeTest
27: [ OK ] LifetimeModuleTest.CumulativeTest (4 ms)
27: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets
27: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (4 ms)
27: [----------] 3 tests from LifetimeModuleTest (12 ms total)
27:
27: [----------] Global test environment tear-down
27: [==========] 69 tests from 14 test cases ran. (247 ms total)
27: [ PASSED ] 69 tests.
27/33 Test #27: AnalysisDataUnitTests ............ Passed 0.27 sec
test 28
Start 28: SelectionUnitTests
28: Test command: /<<PKGBUILDDIR>>/build/basic/bin/selection-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/SelectionUnitTests.xml"
28: Test timeout computed to be: 30
28: [==========] Running 190 tests from 10 test cases.
28: [----------] Global test environment set-up.
28: [----------] 1 test from IndexGroupTest
28: [ RUN ] IndexGroupTest.RemovesDuplicates
28: [ OK ] IndexGroupTest.RemovesDuplicates (0 ms)
28: [----------] 1 test from IndexGroupTest (1 ms total)
28:
28: [----------] 15 tests from IndexBlockTest
28: [ RUN ] IndexBlockTest.CreatesUnknownBlock
28: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms)
28: [ RUN ] IndexBlockTest.CreatesAtomBlock
28: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms)
28: [ RUN ] IndexBlockTest.CreatesResidueBlock
28: [ OK ] IndexBlockTest.CreatesResidueBlock (0 ms)
28: [ RUN ] IndexBlockTest.CreatesMoleculeBlock
28: [ OK ] IndexBlockTest.CreatesMoleculeBlock (0 ms)
28: [ RUN ] IndexBlockTest.CreatesResidueBlockWithCompletion
28: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (0 ms)
28: [ RUN ] IndexBlockTest.CreatesMoleculeBlockWithCompletion
28: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (0 ms)
28: [ RUN ] IndexBlockTest.CreatesSingleBlock
28: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive
28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms)
28: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive
28: [ OK ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksNegative
28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksNegative (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial
28: [ OK ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive
28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive (1 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative
28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive
28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative
28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms)
28: [----------] 15 tests from IndexBlockTest (2 ms total)
28:
28: [----------] 11 tests from IndexMapTest
28: [ RUN ] IndexMapTest.InitializesAtomBlock
28: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms)
28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom
28: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms)
28: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle
28: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (0 ms)
28: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue
28: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (1 ms)
28: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule
28: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms)
28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll
28: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms)
28: [ RUN ] IndexMapTest.InitializesMoleculeBlock
28: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms)
28: [ RUN ] IndexMapTest.MapsSingleBlock
28: [ OK ] IndexMapTest.MapsSingleBlock (1 ms)
28: [ RUN ] IndexMapTest.MapsResidueBlocks
28: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms)
28: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask
28: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (1 ms)
28: [ RUN ] IndexMapTest.HandlesMultipleRequests
28: [ OK ] IndexMapTest.HandlesMultipleRequests (0 ms)
28: [----------] 11 tests from IndexMapTest (4 ms total)
28:
28: [----------] 15 tests from NeighborhoodSearchTest
28: [ RUN ] NeighborhoodSearchTest.SimpleSearch
28: [ OK ] NeighborhoodSearchTest.SimpleSearch (35 ms)
28: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY
28: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (32 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearchBox
28: [ OK ] NeighborhoodSearchTest.GridSearchBox (5 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic
28: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (25 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC
28: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (9 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC
28: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (6 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox
28: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (5 ms)
28: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch
28: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch
28: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (97 ms)
28: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches
28: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (1 ms)
28: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC
28: [ OK ] NeighborhoodSearchTest.HandlesNoPBC (0 ms)
28: [ RUN ] NeighborhoodSearchTest.HandlesNullPBC
28: [ OK ] NeighborhoodSearchTest.HandlesNullPBC (0 ms)
28: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs
28: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms)
28: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions
28: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (8 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions
28: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms)
28: [----------] 15 tests from NeighborhoodSearchTest (225 ms total)
28:
28: [----------] 12 tests from PositionCalculationTest
28: [ RUN ] PositionCalculationTest.ComputesAtomPositions
28: [ OK ] PositionCalculationTest.ComputesAtomPositions (1 ms)
28: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions
28: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms)
28: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions
28: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (1 ms)
28: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions
28: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (0 ms)
28: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions
28: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (1 ms)
28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole
28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms)
28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax
28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms)
28: [ RUN ] PositionCalculationTest.ComputesPositionMask
28: [ OK ] PositionCalculationTest.ComputesPositionMask (1 ms)
28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms
28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms)
28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2
28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms)
28: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations
28: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms)
28: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations
28: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms)
28: [----------] 12 tests from PositionCalculationTest (6 ms total)
28:
28: [----------] 30 tests from SelectionCollectionTest
28: [ RUN ] SelectionCollectionTest.HandlesNoSelections
28: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType
28: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests
28: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry
28: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms)
28: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile
28: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace
28: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions
28: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions
28: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue
28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2
28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3
28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1
28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2
28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1
28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2
28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference
28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed
28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup
28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed
28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2
28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo
28: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes
28: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo
28: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation
28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2
28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (1 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3
28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets
28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2
28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3
28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4
28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (2 ms)
28: [----------] 30 tests from SelectionCollectionTest (24 ms total)
28:
28: [----------] 14 tests from SelectionCollectionInteractiveTest
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput
28: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation
28: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput
28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput
28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups
28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections
28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (3 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus
28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus
28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus
28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline
28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections
28: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine
28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput
28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively
28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms)
28: [----------] 14 tests from SelectionCollectionInteractiveTest (23 ms total)
28:
28: [----------] 66 tests from SelectionCollectionDataTest
28: [ RUN ] SelectionCollectionDataTest.HandlesAllNone
28: [ OK ] SelectionCollectionDataTest.HandlesAllNone (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr
28: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesResnr
28: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesResIndex
28: [ OK ] SelectionCollectionDataTest.HandlesResIndex (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex
28: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesAtomname
28: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname
28: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype
28: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesChain
28: [ OK ] SelectionCollectionDataTest.HandlesChain (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesMass
28: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesCharge
28: [ OK ] SelectionCollectionDataTest.HandlesCharge (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc
28: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode
28: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy
28: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesBeta
28: [ OK ] SelectionCollectionDataTest.HandlesBeta (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesResname
28: [ OK ] SelectionCollectionDataTest.HandlesResname (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords
28: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue
28: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName
28: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords
28: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword
28: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword
28: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword
28: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword
28: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (10 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier
28: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (5 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier
28: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (6 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier
28: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (7 ms)
28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges
28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (4 ms)
28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology
28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets
28: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames
28: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections
28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed
28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections
28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed
28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions
28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers
28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions
28: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges
28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges
28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode
28: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching
28: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching
28: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean
28: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (5 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters
28: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions
28: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame
28: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords
28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods
28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions
28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic
28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons
28: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions
28: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (5 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables
28: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables
28: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (5 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables
28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier
28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable
28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables
28: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis
28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (5 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables
28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables
28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables
28: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups
28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups
28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2
28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (3 ms)
28: [----------] 66 tests from SelectionCollectionDataTest (180 ms total)
28:
28: [----------] 17 tests from SelectionOptionTest
28: [ RUN ] SelectionOptionTest.ParsesSimpleSelection
28: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired
28: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired
28: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (1 ms)
28: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired
28: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (1 ms)
28: [ RUN ] SelectionOptionTest.ChecksEmptySelections
28: [ OK ] SelectionOptionTest.ChecksEmptySelections (1 ms)
28: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections
28: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesTooManySelections
28: [ OK ] SelectionOptionTest.HandlesTooManySelections (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesTooFewSelections
28: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText
28: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesAdjuster
28: [ OK ] SelectionOptionTest.HandlesAdjuster (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster
28: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster
28: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster
28: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection
28: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections
28: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection
28: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster
28: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (1 ms)
28: [----------] 17 tests from SelectionOptionTest (10 ms total)
28:
28: [----------] 9 tests from SelectionFileOptionTest
28: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile
28: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms)
28: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions
28: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms)
28: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile
28: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms)
28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile
28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms)
28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet
28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms)
28: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile
28: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (1 ms)
28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile
28: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms)
28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile
28: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms)
28: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles
28: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (1 ms)
28: [----------] 9 tests from SelectionFileOptionTest (5 ms total)
28:
28: [----------] Global test environment tear-down
28: [==========] 190 tests from 10 test cases ran. (480 ms total)
28: [ PASSED ] 190 tests.
28/33 Test #28: SelectionUnitTests ............... Passed 0.51 sec
test 29
Start 29: TrajectoryAnalysisUnitTests
29: Test command: /<<PKGBUILDDIR>>/build/basic/bin/trajectoryanalysis-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/TrajectoryAnalysisUnitTests.xml"
29: Test timeout computed to be: 30
29: [==========] Running 68 tests from 13 test cases.
29: [----------] Global test environment set-up.
29: [----------] 5 tests from ClustsizeTest
29: [ RUN ] ClustsizeTest.NoMolDefaultCutoff
29: Reading frames from pdb file
Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements
29: There is one group in the index
29: '', 24 atoms
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Total number of atoms in clusters = 24
29: cmid: 2, cmax: 4, max_size: 6
29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6
29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (4 ms)
29: [ RUN ] ClustsizeTest.NoMolShortCutoff
29: Reading frames from pdb file
Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements
29: There is one group in the index
29: '', 24 atoms
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Total number of atoms in clusters = 24
29: cmid: 1, cmax: 6, max_size: 6
29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6
29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (3 ms)
29: [ RUN ] ClustsizeTest.MolDefaultCutoff
29: Reading frames from pdb file
Reading frame 0 time 0.000 Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: '', 24 atoms
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Total number of atoms in clusters = 8
29: cmid: 2, cmax: 4, max_size: 2
29: 50%100%cmid: 2, cmax: 6, max_size: 2
29: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (7 ms)
29: [ RUN ] ClustsizeTest.MolShortCutoff
29: Reading frames from pdb file
Reading frame 0 time 0.000 Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: '', 24 atoms
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Total number of atoms in clusters = 8
29: cmid: 1, cmax: 6, max_size: 2
29: 50%100%cmid: 2, cmax: 6, max_size: 2
29: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (6 ms)
29: [ RUN ] ClustsizeTest.MolCSize
29: Reading frames from pdb file
Reading frame 0 time 0.000 Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: '', 24 atoms
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Total number of atoms in clusters = 8
29: cmid: 2, cmax: 4, max_size: 2
29: 50%100%cmid: 2, cmax: 6, max_size: 2
29: 50%100%[ OK ] ClustsizeTest.MolCSize (6 ms)
29: [----------] 5 tests from ClustsizeTest (26 ms total)
29:
29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest
29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp
29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (2 ms)
29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory
29: Reading frames from gro file 'Test system', 8 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (6 ms)
29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset
29: Reading frames from gro file 'Test system', 8 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (6 ms)
29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory
29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms)
29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (15 ms total)
29:
29: [----------] 11 tests from AngleModuleTest
29: [ RUN ] AngleModuleTest.ComputesSimpleAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesSimpleAngles (9 ms)
29: [ RUN ] AngleModuleTest.ComputesDihedrals
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesDihedrals (8 ms)
29: [ RUN ] AngleModuleTest.ComputesVectorPairAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesVectorPairAngles (9 ms)
29: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (9 ms)
29: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (8 ms)
29: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (9 ms)
29: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles
29: Reading frames from gro file 'Test system for different angles', 33 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (10 ms)
29: [ RUN ] AngleModuleTest.ComputesMultipleAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesMultipleAngles (10 ms)
29: [ RUN ] AngleModuleTest.HandlesDynamicSelections
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.HandlesDynamicSelections (9 ms)
29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (9 ms)
29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (10 ms)
29: [----------] 11 tests from AngleModuleTest (100 ms total)
29:
29: [----------] 3 tests from DistanceModuleTest
29: [ RUN ] DistanceModuleTest.ComputesDistances
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: atomname S1 S2:
29: Number of samples: 5
29: Average distance: 1.43246 nm
29: Standard deviation: 0.96700 nm
29: [ OK ] DistanceModuleTest.ComputesDistances (12 ms)
29: [ RUN ] DistanceModuleTest.ComputesMultipleDistances
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: atomname S1 S2:
29: Number of samples: 5
29: Average distance: 1.43246 nm
29: Standard deviation: 0.96700 nm
29: resindex 1 to 4 and atomname CB merge resindex 2 to 5 and atomname CB:
29: Number of samples: 4
29: Average distance: 1.81066 nm
29: Standard deviation: 0.79289 nm
29: [ OK ] DistanceModuleTest.ComputesMultipleDistances (14 ms)
29: [ RUN ] DistanceModuleTest.HandlesDynamicSelections
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: atomname S1 S2 and res_cog x < 2.8:
29: Number of samples: 3
29: Average distance: 1.72076 nm
29: Standard deviation: 1.24839 nm
29: [ OK ] DistanceModuleTest.HandlesDynamicSelections (12 ms)
29: [----------] 3 tests from DistanceModuleTest (38 ms total)
29:
29: [----------] 2 tests from FreeVolumeModuleTest
29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision)
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision)
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for 40 particles. These were set to zero.
29:
Reading frame 0 time 0.000
Last frame 0 time 0.000
29: Analyzed 1 frames, last time 0.000
29: cutoff = 0.18 nm
29: probe_radius = 0 nm
29: seed = 13
29: ninsert = 1000 probes per nm^3
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David
29: van der Spoel and Luciano T. Costa
29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium
29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View
29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429
29: -------- -------- --- Thank You --- -------- --------
29:
29: Free volume 38.02 +/- 0.00 %
29: Total volume 68.92 +/- 0.00 nm^3
29: Number of molecules 340 total mass 63491.38 Dalton
29: Average molar mass: 186.74 Dalton
29: Density rho: 1529.71 +/- 0.00 nm^3
29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3
29: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3
29: Fractional free volume 0.194 +/- 0.000
29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (418 ms)
29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision)
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision)
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
Reading frame 0 time 0.000
Last frame 0 time 0.000
29: Analyzed 1 frames, last time 0.000
29: cutoff = 0.18 nm
29: probe_radius = 0 nm
29: seed = 17
29: ninsert = 1000 probes per nm^3
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David
29: van der Spoel and Luciano T. Costa
29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium
29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View
29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429
29: -------- -------- --- Thank You --- -------- --------
29:
29: Free volume 38.48 +/- 0.00 %
29: Total volume 68.92 +/- 0.00 nm^3
29: Number of molecules 340 total mass 63491.38 Dalton
29: Average molar mass: 186.74 Dalton
29: Density rho: 1529.71 +/- 0.00 nm^3
29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3
29: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3
29: Fractional free volume 0.200 +/- 0.000
29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (415 ms)
29: [----------] 2 tests from FreeVolumeModuleTest (833 ms total)
29:
29: [----------] 7 tests from PairDistanceModuleTest
29: [ RUN ] PairDistanceModuleTest.ComputesAllDistances
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesAllDistances (8 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (7 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (7 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (7 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (7 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (8 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (7 ms)
29: [----------] 7 tests from PairDistanceModuleTest (51 ms total)
29:
29: [----------] 3 tests from RdfModuleTest
29: [ RUN ] RdfModuleTest.BasicTest
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] RdfModuleTest.BasicTest (51 ms)
29: [ RUN ] RdfModuleTest.CalculatesSurf
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] RdfModuleTest.CalculatesSurf (29 ms)
29: [ RUN ] RdfModuleTest.CalculatesXY
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] RdfModuleTest.CalculatesXY (59 ms)
29: [----------] 3 tests from RdfModuleTest (139 ms total)
29:
29: [----------] 5 tests from SasaModuleTest
29: [ RUN ] SasaModuleTest.BasicTest
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and
29: Michael Scharf
29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration
29: of Surface Area and Volume and to Dot Surface Contouring of Molecular
29: Assemblies
29: J. Comp. Chem. 16 (1995) pp. 273-284
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29: [ OK ] SasaModuleTest.BasicTest (26 ms)
29: [ RUN ] SasaModuleTest.HandlesSelectedResidues
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and
29: Michael Scharf
29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration
29: of Surface Area and Volume and to Dot Surface Contouring of Molecular
29: Assemblies
29: J. Comp. Chem. 16 (1995) pp. 273-284
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29: [ OK ] SasaModuleTest.HandlesSelectedResidues (16 ms)
29: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and
29: Michael Scharf
29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration
29: of Surface Area and Volume and to Dot Surface Contouring of Molecular
29: Assemblies
29: J. Comp. Chem. 16 (1995) pp. 273-284
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (14 ms)
29: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and
29: Michael Scharf
29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration
29: of Surface Area and Volume and to Dot Surface Contouring of Molecular
29: Assemblies
29: J. Comp. Chem. 16 (1995) pp. 273-284
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (21 ms)
29: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and
29: Michael Scharf
29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration
29: of Surface Area and Volume and to Dot Surface Contouring of Molecular
29: Assemblies
29: J. Comp. Chem. 16 (1995) pp. 273-284
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (20 ms)
29: [----------] 5 tests from SasaModuleTest (101 ms total)
29:
29: [----------] 8 tests from SelectModuleTest
29: [ RUN ] SelectModuleTest.BasicTest
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.BasicTest (16 ms)
29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (11 ms)
29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (11 ms)
29: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (11 ms)
29: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (12 ms)
29: [ RUN ] SelectModuleTest.NormalizesSizes
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.NormalizesSizes (8 ms)
29: [ RUN ] SelectModuleTest.WritesResidueNumbers
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.WritesResidueNumbers (6 ms)
29: [ RUN ] SelectModuleTest.WritesResidueIndices
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.WritesResidueIndices (7 ms)
29: [----------] 8 tests from SelectModuleTest (83 ms total)
29:
29: [----------] 10 tests from SurfaceAreaTest
29: [ RUN ] SurfaceAreaTest.ComputesSinglePoint
29: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms)
29: [ RUN ] SurfaceAreaTest.ComputesTwoPoints
29: [ OK ] SurfaceAreaTest.ComputesTwoPoints (3 ms)
29: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius
29: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (3 ms)
29: [ RUN ] SurfaceAreaTest.SurfacePoints12
29: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms)
29: [ RUN ] SurfaceAreaTest.SurfacePoints32
29: [ OK ] SurfaceAreaTest.SurfacePoints32 (1 ms)
29: [ RUN ] SurfaceAreaTest.SurfacePoints42
29: [ OK ] SurfaceAreaTest.SurfacePoints42 (0 ms)
29: [ RUN ] SurfaceAreaTest.SurfacePoints122
29: [ OK ] SurfaceAreaTest.SurfacePoints122 (2 ms)
29: [ RUN ] SurfaceAreaTest.Computes100Points
29: [ OK ] SurfaceAreaTest.Computes100Points (2 ms)
29: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC
29: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (6 ms)
29: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC
29: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (8 ms)
29: [----------] 10 tests from SurfaceAreaTest (25 ms total)
29:
29: [----------] 4 tests from TrajectoryModuleTest
29: [ RUN ] TrajectoryModuleTest.BasicTest
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryModuleTest.BasicTest (9 ms)
29: [ RUN ] TrajectoryModuleTest.PlotsXOnly
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryModuleTest.PlotsXOnly (8 ms)
29: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (7 ms)
29: [ RUN ] TrajectoryModuleTest.HandlesNoForces
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryModuleTest.HandlesNoForces (8 ms)
29: [----------] 4 tests from TrajectoryModuleTest (32 ms total)
29:
29: [----------] 5 tests from UnionFinderTest
29: [ RUN ] UnionFinderTest.WorksEmpty
29: [ OK ] UnionFinderTest.WorksEmpty (0 ms)
29: [ RUN ] UnionFinderTest.BasicMerges
29: [ OK ] UnionFinderTest.BasicMerges (0 ms)
29: [ RUN ] UnionFinderTest.LargerMerges
29: [ OK ] UnionFinderTest.LargerMerges (0 ms)
29: [ RUN ] UnionFinderTest.LongRightMerge
29: [ OK ] UnionFinderTest.LongRightMerge (0 ms)
29: [ RUN ] UnionFinderTest.LongLeftMerge
29: [ OK ] UnionFinderTest.LongLeftMerge (0 ms)
29: [----------] 5 tests from UnionFinderTest (1 ms total)
29:
29: [----------] 1 test from MappedUnionFinderTest
29: [ RUN ] MappedUnionFinderTest.BasicMerges
29: [ OK ] MappedUnionFinderTest.BasicMerges (0 ms)
29: [----------] 1 test from MappedUnionFinderTest (0 ms total)
29:
29: [----------] Global test environment tear-down
29: [==========] 68 tests from 13 test cases ran. (1444 ms total)
29: [ PASSED ] 68 tests.
29/33 Test #29: TrajectoryAnalysisUnitTests ...... Passed 1.47 sec
test 30
Start 30: EnergyAnalysisUnitTests
30: Test command: /<<PKGBUILDDIR>>/build/basic/bin/energyanalysis-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/EnergyAnalysisUnitTests.xml"
30: Test timeout computed to be: 30
30: [==========] Running 7 tests from 4 test cases.
30: [----------] Global test environment set-up.
30: [----------] 1 test from DhdlTest
30: [ RUN ] DhdlTest.ExtractDhdl
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/dhdl.edr as double precision energy file
30: Reading file /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/dhdl.tpr, VERSION 2016-dev-20160810-e3ded7f (double precision)
30: Note: file tpx version 110, software tpx version 112
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.010
Reading energy frame 2 time 0.020
Reading energy frame 3 time 0.030
Reading energy frame 4 time 0.040
Reading energy frame 5 time 0.050
Reading energy frame 6 time 0.060
Reading energy frame 7 time 0.070
Reading energy frame 8 time 0.080
Reading energy frame 9 time 0.090
Reading energy frame 10 time 0.100
Reading energy frame 11 time 0.110
Reading energy frame 12 time 0.120
Reading energy frame 13 time 0.130
Reading energy frame 14 time 0.140
Reading energy frame 15 time 0.150
Reading energy frame 16 time 0.160
Reading energy frame 17 time 0.170
Reading energy frame 18 time 0.180
Reading energy frame 19 time 0.190
Reading energy frame 20 time 0.200
Reading energy frame 30 time 0.300
Reading energy frame 40 time 0.400
Reading energy frame 50 time 0.500
Reading energy frame 60 time 0.600
Reading energy frame 70 time 0.700
Reading energy frame 80 time 0.800
Reading energy frame 90 time 0.900
Reading energy frame 100 time 1.000
Last energy frame read 100 time 1.000
30:
30:
30: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /<<PKGBUILDDIR>>/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg
30: [ OK ] DhdlTest.ExtractDhdl (51 ms)
30: [----------] 1 test from DhdlTest (51 ms total)
30:
30: [----------] 1 test from OriresTest
30: [ RUN ] OriresTest.ExtractOrires
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/orires.edr as single precision energy file
30: Reading file /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/orires.tpr, VERSION 2017-dev-20170725-fea8651 (single precision)
30: Note: file tpx version 111, software tpx version 112
30: Found 7 orientation restraints with 1 experimentsSelect the orientation restraint labels you want (-1 is all)
30: End your selection with 0
30: Selecting all 7 orientation restraints
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.002
Reading energy frame 2 time 0.004
Reading energy frame 3 time 0.006
Reading energy frame 4 time 0.008
Reading energy frame 5 time 0.010
Reading energy frame 6 time 0.012
Reading energy frame 7 time 0.014
Reading energy frame 8 time 0.016
Reading energy frame 9 time 0.018
Reading energy frame 10 time 0.020
Last energy frame read 10 time 0.020
30: [ OK ] OriresTest.ExtractOrires (74 ms)
30: [----------] 1 test from OriresTest (75 ms total)
30:
30: [----------] 3 tests from EnergyTest
30: [ RUN ] EnergyTest.ExtractEnergy
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file
30:
30: Select the terms you want from the following list by
30: selecting either (part of) the name or the number or a combination.
30: End your selection with an empty line or a zero.
30: -------------------------------------------------------------------
30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip.
30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature
30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y
30: 13 Box-Z 14 Volume 15 Density 16 pV
30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ
30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX
30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY
30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ
30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen
30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System
30:
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.200
Reading energy frame 2 time 0.400
Reading energy frame 3 time 0.600
Reading energy frame 4 time 0.800
Reading energy frame 5 time 1.000
Reading energy frame 6 time 1.200
Reading energy frame 7 time 1.400
Reading energy frame 8 time 1.600
Reading energy frame 9 time 1.800
Reading energy frame 10 time 2.000
Reading energy frame 11 time 2.200
Reading energy frame 12 time 2.400
Reading energy frame 13 time 2.600
Reading energy frame 14 time 2.800
Reading energy frame 15 time 3.000
Reading energy frame 16 time 3.200
Reading energy frame 17 time 3.400
Reading energy frame 18 time 3.600
Reading energy frame 19 time 3.800
Reading energy frame 20 time 4.000
Reading energy frame 30 time 6.000
Reading energy frame 40 time 8.000
Reading energy frame 50 time 10.000
Last energy frame read 50 time 10.000
30:
30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets
30: All statistics are over 5001 points
30:
30: Energy Average Err.Est. RMSD Tot-Drift
30: -------------------------------------------------------------------------------
30: Potential -34142.2 39 228.993 -62.8906 (kJ/mol)
30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol)
30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol)
30: [ OK ] EnergyTest.ExtractEnergy (12 ms)
30: [ RUN ] EnergyTest.ExtractEnergyByNumber
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file
30:
30: Select the terms you want from the following list by
30: selecting either (part of) the name or the number or a combination.
30: End your selection with an empty line or a zero.
30: -------------------------------------------------------------------
30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip.
30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature
30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y
30: 13 Box-Z 14 Volume 15 Density 16 pV
30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ
30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX
30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY
30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ
30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen
30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System
30:
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.200
Reading energy frame 2 time 0.400
Reading energy frame 3 time 0.600
Reading energy frame 4 time 0.800
Reading energy frame 5 time 1.000
Reading energy frame 6 time 1.200
Reading energy frame 7 time 1.400
Reading energy frame 8 time 1.600
Reading energy frame 9 time 1.800
Reading energy frame 10 time 2.000
Reading energy frame 11 time 2.200
Reading energy frame 12 time 2.400
Reading energy frame 13 time 2.600
Reading energy frame 14 time 2.800
Reading energy frame 15 time 3.000
Reading energy frame 16 time 3.200
Reading energy frame 17 time 3.400
Reading energy frame 18 time 3.600
Reading energy frame 19 time 3.800
Reading energy frame 20 time 4.000
Reading energy frame 30 time 6.000
Reading energy frame 40 time 8.000
Reading energy frame 50 time 10.000
Last energy frame read 50 time 10.000
30:
30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets
30: All statistics are over 5001 points
30:
30: Energy Average Err.Est. RMSD Tot-Drift
30: -------------------------------------------------------------------------------
30: Coul. recip. 302.771 2.8 17.5152 12.5403 (kJ/mol)
30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol)
30: Pres. DC -268.49 3 8.52175 13.2804 (bar)
30: [ OK ] EnergyTest.ExtractEnergyByNumber (12 ms)
30: [ RUN ] EnergyTest.ExtractEnergyMixed
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file
30:
30: Select the terms you want from the following list by
30: selecting either (part of) the name or the number or a combination.
30: End your selection with an empty line or a zero.
30: -------------------------------------------------------------------
30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip.
30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature
30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y
30: 13 Box-Z 14 Volume 15 Density 16 pV
30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ
30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX
30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY
30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ
30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen
30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System
30:
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.200
Reading energy frame 2 time 0.400
Reading energy frame 3 time 0.600
Reading energy frame 4 time 0.800
Reading energy frame 5 time 1.000
Reading energy frame 6 time 1.200
Reading energy frame 7 time 1.400
Reading energy frame 8 time 1.600
Reading energy frame 9 time 1.800
Reading energy frame 10 time 2.000
Reading energy frame 11 time 2.200
Reading energy frame 12 time 2.400
Reading energy frame 13 time 2.600
Reading energy frame 14 time 2.800
Reading energy frame 15 time 3.000
Reading energy frame 16 time 3.200
Reading energy frame 17 time 3.400
Reading energy frame 18 time 3.600
Reading energy frame 19 time 3.800
Reading energy frame 20 time 4.000
Reading energy frame 30 time 6.000
Reading energy frame 40 time 8.000
Reading energy frame 50 time 10.000
Last energy frame read 50 time 10.000
30:
30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 4 data sets
30: All statistics are over 5001 points
30:
30: Energy Average Err.Est. RMSD Tot-Drift
30: -------------------------------------------------------------------------------
30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol)
30: Pressure 5.34371 4.1 605.307 -4.88771 (bar)
30: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm)
30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3)
30: [ OK ] EnergyTest.ExtractEnergyMixed (12 ms)
30: [----------] 3 tests from EnergyTest (38 ms total)
30:
30: [----------] 2 tests from ViscosityTest
30: [ RUN ] ViscosityTest.EinsteinViscosity
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.200
Reading energy frame 2 time 0.400
Reading energy frame 3 time 0.600
Reading energy frame 4 time 0.800
Reading energy frame 5 time 1.000
Reading energy frame 6 time 1.200
Reading energy frame 7 time 1.400
Reading energy frame 8 time 1.600
Reading energy frame 9 time 1.800
Reading energy frame 10 time 2.000
Reading energy frame 11 time 2.200
Reading energy frame 12 time 2.400
Reading energy frame 13 time 2.600
Reading energy frame 14 time 2.800
Reading energy frame 15 time 3.000
Reading energy frame 16 time 3.200
Reading energy frame 17 time 3.400
Reading energy frame 18 time 3.600
Reading energy frame 19 time 3.800
Reading energy frame 20 time 4.000
Reading energy frame 30 time 6.000
Reading energy frame 40 time 8.000
Reading energy frame 50 time 10.000
Last energy frame read 50 time 10.000
30:
30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets
30: All statistics are over 5001 points
30:
30: Energy Average Err.Est. RMSD Tot-Drift
30: -------------------------------------------------------------------------------
30: Pres-XX 20.2092 65 717.193 185.978 (bar)
30: Pres-XY -47.7351 39 372.522 207.456 (bar)
30: Pres-XZ 11.477 31 379.79 6.80818 (bar)
30: Pres-YX -47.7106 39 372.525 207.5 (bar)
30: Pres-YY 38.9241 40 803.899 -27.1505 (bar)
30: Pres-YZ -41.3534 45 401.216 114.663 (bar)
30: Pres-ZX 11.5238 31 379.804 6.91707 (bar)
30: Pres-ZY -41.3119 45 401.196 114.743 (bar)
30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar)
30: Temperature 300.001 0.02 5.8425 -0.0130558 (K)
30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3)
30: Pressure 5.34371 4.1 605.307 -4.88771 (bar)
30: [ OK ] ViscosityTest.EinsteinViscosity (50 ms)
30: [ RUN ] ViscosityTest.EinsteinViscosityIntegral
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.200
Reading energy frame 2 time 0.400
Reading energy frame 3 time 0.600
Reading energy frame 4 time 0.800
Reading energy frame 5 time 1.000
Reading energy frame 6 time 1.200
Reading energy frame 7 time 1.400
Reading energy frame 8 time 1.600
Reading energy frame 9 time 1.800
Reading energy frame 10 time 2.000
Reading energy frame 11 time 2.200
Reading energy frame 12 time 2.400
Reading energy frame 13 time 2.600
Reading energy frame 14 time 2.800
Reading energy frame 15 time 3.000
Reading energy frame 16 time 3.200
Reading energy frame 17 time 3.400
Reading energy frame 18 time 3.600
Reading energy frame 19 time 3.800
Reading energy frame 20 time 4.000
Reading energy frame 30 time 6.000
Reading energy frame 40 time 8.000
Reading energy frame 50 time 10.000
Last energy frame read 50 time 10.000
30:
30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets
30: All statistics are over 5001 points
30:
30: Energy Average Err.Est. RMSD Tot-Drift
30: -------------------------------------------------------------------------------
30: Pres-XX 20.2092 65 717.193 185.978 (bar)
30: Pres-XY -47.7351 39 372.522 207.456 (bar)
30: Pres-XZ 11.477 31 379.79 6.80818 (bar)
30: Pres-YX -47.7106 39 372.525 207.5 (bar)
30: Pres-YY 38.9241 40 803.899 -27.1505 (bar)
30: Pres-YZ -41.3534 45 401.216 114.663 (bar)
30: Pres-ZX 11.5238 31 379.804 6.91707 (bar)
30: Pres-ZY -41.3119 45 401.196 114.743 (bar)
30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar)
30: Temperature 300.001 0.02 5.8425 -0.0130558 (K)
30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3)
30: Pressure 5.34371 4.1 605.307 -4.88771 (bar)
30: [ OK ] ViscosityTest.EinsteinViscosityIntegral (42 ms)
30: [----------] 2 tests from ViscosityTest (93 ms total)
30:
30: [----------] Global test environment tear-down
30: [==========] 7 tests from 4 test cases ran. (257 ms total)
30: [ PASSED ] 7 tests.
30/33 Test #30: EnergyAnalysisUnitTests .......... Passed 0.27 sec
test 31
Start 31: CompatibilityHelpersTests
31: Test command: /<<PKGBUILDDIR>>/build/basic/bin/compat-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/CompatibilityHelpersTests.xml"
31: Test timeout computed to be: 30
31: [==========] Running 1 test from 1 test case.
31: [----------] Global test environment set-up.
31: [----------] 1 test from CompatibilityHelper
31: [ RUN ] CompatibilityHelper.MakeUniqueCompiles
31: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms)
31: [----------] 1 test from CompatibilityHelper (0 ms total)
31:
31: [----------] Global test environment tear-down
31: [==========] 1 test from 1 test case ran. (1 ms total)
31: [ PASSED ] 1 test.
31/33 Test #31: CompatibilityHelpersTests ........ Passed 0.02 sec
test 32
Start 32: MdrunTests
32: Test command: /<<PKGBUILDDIR>>/build/basic/bin/mdrun-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/MdrunTests.xml"
32: Test timeout computed to be: 600
32: [==========] Running 29 tests from 11 test cases.
32: [----------] Global test environment set-up.
32: [----------] 6 tests from BondedInteractionsTest
32: [ RUN ] BondedInteractionsTest.NormalBondWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to 2061253267
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32:
32: NOTE 3 [file BondedInteractionsTest_NormalBondWorks_butane1.top, line 31]:
32: In moleculetype 'butane' 2 atoms are not bound by a potential or
32: constraint to any other atom in the same moleculetype. Although
32: technically this might not cause issues in a simulation, this often means
32: that the user forgot to add a bond/potential/constraint or put multiple
32: molecules in the same moleculetype definition by mistake. Run with -v to
32: get information for each atom.
32:
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 115.227 0.208
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.NormalBondWorks (30 ms)
32: [ RUN ] BondedInteractionsTest.TabulatedBondWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to 1475705321
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32:
32: NOTE 3 [file BondedInteractionsTest_TabulatedBondWorks_butane1.top, line 31]:
32: In moleculetype 'butane' 2 atoms are not bound by a potential or
32: constraint to any other atom in the same moleculetype. Although
32: technically this might not cause issues in a simulation, this often means
32: that the user forgot to add a bond/potential/constraint or put multiple
32: molecules in the same moleculetype definition by mistake. Run with -v to
32: get information for each atom.
32:
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 130.449 0.184
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.TabulatedBondWorks (31 ms)
32: [ RUN ] BondedInteractionsTest.NormalAngleWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to -601689941
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32:
32: NOTE 3 [file BondedInteractionsTest_NormalAngleWorks_butane1.top, line 31]:
32: In moleculetype 'butane' 1 atoms are not bound by a potential or
32: constraint to any other atom in the same moleculetype. Although
32: technically this might not cause issues in a simulation, this often means
32: that the user forgot to add a bond/potential/constraint or put multiple
32: molecules in the same moleculetype definition by mistake. Run with -v to
32: get information for each atom.
32:
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 100.0
32: (ns/day) (hour/ns)
32: Performance: 132.066 0.182
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.NormalAngleWorks (28 ms)
32: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to -514449726
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32:
32: NOTE 3 [file BondedInteractionsTest_TabulatedAngleWorks_butane1.top, line 31]:
32: In moleculetype 'butane' 1 atoms are not bound by a potential or
32: constraint to any other atom in the same moleculetype. Although
32: technically this might not cause issues in a simulation, this often means
32: that the user forgot to add a bond/potential/constraint or put multiple
32: molecules in the same moleculetype definition by mistake. Run with -v to
32: get information for each atom.
32:
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 140.788 0.170
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (30 ms)
32: [ RUN ] BondedInteractionsTest.NormalDihedralWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to 753756790
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 3 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 130.168 0.184
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.NormalDihedralWorks (29 ms)
32: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to -498162073
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 3 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 100.0
32: (ns/day) (hour/ns)
32: Performance: 115.484 0.208
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (32 ms)
32: [----------] 6 tests from BondedInteractionsTest (180 ms total)
32:
32: [----------] 1 test from GromppTest
32: [ RUN ] GromppTest.EmptyMdpFileWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to 893228561
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 12.00
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]:
32: NVE simulation: will use the initial temperature of 1046.791 K for
32: determining the Verlet buffer size
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 4 notes
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K
32: Calculated rlist for 1x1 atom pair-list as 1.061 nm, buffer size 0.061 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32: [ OK ] GromppTest.EmptyMdpFileWorks (57 ms)
32: [----------] 1 test from GromppTest (57 ms total)
32:
32: [----------] 1 test from CompelTest
32: [ RUN ] CompelTest.SwapCanRun
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/src/programs/mdrun/tests/OctaneSandwich.mdp]:
32: The Berendsen thermostat does not generate the correct kinetic energy
32: distribution. You might want to consider using the V-rescale thermostat.
32:
32: Setting the LD random seed to -979258668
32: Generated 330891 of the 330891 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 330891 of the 330891 1-4 parameter combinations
32: Excluding 3 bonded neighbours molecule type 'Protein'
32: Excluding 3 bonded neighbours molecule type 'OCT'
32: Excluding 1 bonded neighbours molecule type 'NA'
32: Excluding 1 bonded neighbours molecule type 'CL'
32: Excluding 3 bonded neighbours molecule type 'Protein'
32: Excluding 3 bonded neighbours molecule type 'OCT'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Split0 group 'Ch0' contains 83 atoms.
32: Split1 group 'Ch1' contains 83 atoms.
32: Solvent group 'SOL' contains 11931 atoms.
32: Swap group 'NA+' contains 19 atoms.
32: Swap group 'CL-' contains 19 atoms.
32: Number of degrees of freedom in T-Coupling group System is 27869.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/src/programs/mdrun/tests/OctaneSandwich.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018 (single precision)
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: SWAP: Determining initial numbers of ions per compartment.
32: SWAP: Setting pointers for checkpoint writing
32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules
32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules
32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules
32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules
32: starting mdrun 'Channel_coco in octane membrane'
32: 2 steps, 0.0 ps.
32: turning all bonds into constraints...
32: turning all bonds into constraints...
32: turning all bonds into constraints...
32: turning all bonds into constraints...
32: turning all bonds into constraints...
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K
32: Calculated rlist for 1x1 atom pair-list as 1.314 nm, buffer size 0.314 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.260 nm, buffer size 0.260 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 1 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 2.087 2.087 100.0
32: (ns/day) (hour/ns)
32: Performance: 0.621 38.639
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018 (single precision)
32:
32: Reading checkpoint file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.cpt generated: Fri Jan 26 13:10:35 2018
32:
32:
32: Overriding nsteps with value passed on the command line: 2 steps, 0.01 ps
32: No option -multi
32:
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: SWAP: Setting pointers for checkpoint writing
32: SWAP: Copying channel fluxes from checkpoint file data
32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules
32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules
32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules
32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules
32: starting mdrun 'Channel_coco in octane membrane'
32: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps).
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 1.765 1.765 100.0
32: (ns/day) (hour/ns)
32: Performance: 0.734 32.682
32: [ OK ] CompelTest.SwapCanRun (4921 ms)
32: [----------] 1 test from CompelTest (4921 ms total)
32:
32: [----------] 1 test from ImdTest
32: [ RUN ] ImdTest.ImdCanRun
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/src/programs/mdrun/tests/spc2-IMD.mdp]:
32: The Berendsen thermostat does not generate the correct kinetic energy
32: distribution. You might want to consider using the V-rescale thermostat.
32:
32: Setting the LD random seed to 2079202549
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Group 'SecondWaterMolecule' with 3 atoms can be activated for interactive molecular dynamics (IMD).
32: Number of degrees of freedom in T-Coupling group System is 9.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/src/programs/mdrun/tests/spc2-IMD.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/ImdTest_ImdCanRun.tpr, VERSION 2018 (single precision)
32: Changing nstlist from 10 to 50, rlist from 1.121 to 1.344
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: IMD: Enabled. This simulation will accept incoming IMD connections.
32: IMD: You chose a port number < 1. Will automatically assign a free port.
32: IMD: Pulling from IMD remote is enabled (-imdpull).
32: IMD: Turning on IMD - port for incoming requests is 0.
32: IMD: Setting up incoming socket.
32: IMD: Listening for IMD connection on port 54302.
32: IMD: -imdwait not set, starting simulation.
32: starting mdrun 'spc2'
32: 2 steps, 0.0 ps.
32: turning all bonds into constraints...
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K
32: Calculated rlist for 1x1 atom pair-list as 1.134 nm, buffer size 0.134 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.121 nm, buffer size 0.121 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.071 0.071 100.0
32: (ns/day) (hour/ns)
32: Performance: 14.580 1.646
32: [ OK ] ImdTest.ImdCanRun (102 ms)
32: [----------] 1 test from ImdTest (102 ms total)
32:
32: [----------] 1 test from MdrunTerminationTest
32: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp, line 6]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -121696618
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 9.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018 (single precision)
32: Changing nstlist from 10 to 1, rlist from 1.024 to 1
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc2'
32: 100 steps, 0.1 ps.
32:
32: Step 1: Run time exceeded 0.000 hours, will terminate the run
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.062 0.062 100.0
32: (ns/day) (hour/ns)
32: Performance: 4.163 5.766
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018 (single precision)
32:
32: Reading checkpoint file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.cpt generated: Fri Jan 26 13:10:37 2018
32:
32:
32: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps
32: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244
32:
32: No option -multi
32:
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc2'
32: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps).
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.032 0.032 100.0
32: (ns/day) (hour/ns)
32: Performance: 7.997 3.001
32: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (142 ms)
32: [----------] 1 test from MdrunTerminationTest (142 ms total)
32:
32: [----------] 1 test from PmeTest
32: [ RUN ] PmeTest.ReproducesEnergies
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp, line 6]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -1958131366
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]:
32: NVE simulation: will use the initial temperature of 1046.791 K for
32: determining the Verlet buffer size
32:
32: Estimate for the relative computational load of the PME mesh part: 1.00
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]:
32: The optimal PME mesh load for parallel simulations is below 0.5
32: and for highly parallel simulations between 0.25 and 0.33,
32: for higher performance, increase the cut-off and the PME grid spacing.
32:
32:
32:
32: There were 3 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 20 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K
32: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.000 nm, buffer size 0.000 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: Calculating fourier grid dimensions for X Y Z
32: Using a fourier grid of 28x28x28, spacing 0.108 0.108 0.108
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.127 0.127 100.0
32: (ns/day) (hour/ns)
32: Performance: 14.295 1.679
32: Opened /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001
Reading energy frame 2 time 0.002
Reading energy frame 3 time 0.003
Reading energy frame 4 time 0.004
Reading energy frame 5 time 0.005
Reading energy frame 6 time 0.006
Reading energy frame 7 time 0.007
Reading energy frame 8 time 0.008
Reading energy frame 9 time 0.009
Reading energy frame 10 time 0.010
Reading energy frame 11 time 0.011
Reading energy frame 12 time 0.012
Reading energy frame 13 time 0.013
Reading energy frame 14 time 0.014
Reading energy frame 15 time 0.015
Reading energy frame 16 time 0.016
Reading energy frame 17 time 0.017
Reading energy frame 18 time 0.018
Reading energy frame 19 time 0.019
Reading energy frame 20 time 0.020 Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 20 steps, 0.0 ps.
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.127 0.127 100.0
32: (ns/day) (hour/ns)
32: Performance: 14.328 1.675
32: Opened /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001
Reading energy frame 2 time 0.002
Reading energy frame 3 time 0.003
Reading energy frame 4 time 0.004
Reading energy frame 5 time 0.005
Reading energy frame 6 time 0.006
Reading energy frame 7 time 0.007
Reading energy frame 8 time 0.008
Reading energy frame 9 time 0.009
Reading energy frame 10 time 0.010
Reading energy frame 11 time 0.011
Reading energy frame 12 time 0.012
Reading energy frame 13 time 0.013
Reading energy frame 14 time 0.014
Reading energy frame 15 time 0.015
Reading energy frame 16 time 0.016
Reading energy frame 17 time 0.017
Reading energy frame 18 time 0.018
Reading energy frame 19 time 0.019
Reading energy frame 20 time 0.020 Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32:
32: NOTE: Cycle counters unsupported or not enabled in kernel. Cannot use PME-PP balancing.
32: starting mdrun 'spc-and-methanol'
32: 20 steps, 0.0 ps.
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.127 0.127 100.0
32: (ns/day) (hour/ns)
32: Performance: 14.324 1.676
32: Opened /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001
Reading energy frame 2 time 0.002
Reading energy frame 3 time 0.003
Reading energy frame 4 time 0.004
Reading energy frame 5 time 0.005
Reading energy frame 6 time 0.006
Reading energy frame 7 time 0.007
Reading energy frame 8 time 0.008
Reading energy frame 9 time 0.009
Reading energy frame 10 time 0.010
Reading energy frame 11 time 0.011
Reading energy frame 12 time 0.012
Reading energy frame 13 time 0.013
Reading energy frame 14 time 0.014
Reading energy frame 15 time 0.015
Reading energy frame 16 time 0.016
Reading energy frame 17 time 0.017
Reading energy frame 18 time 0.018
Reading energy frame 19 time 0.019
Reading energy frame 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (8503 ms)
32: [----------] 1 test from PmeTest (8503 ms total)
32:
32: [----------] 3 tests from Checking/InitialConstraintsTest
32: [ RUN ] Checking/InitialConstraintsTest.Works/0
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -1564488268
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 11.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]:
32: NVE simulation: will use the initial temperature of 1141.954 K for
32: determining the Verlet buffer size
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 3 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 1 steps, 0.0 ps.
32: turning H bonds into constraints...
32: turning H bonds into constraints...
32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K
32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.050 0.050 100.0
32: (ns/day) (hour/ns)
32: Performance: 3.472 6.913
32: Opened /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as single precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (123 ms)
32: [ RUN ] Checking/InitialConstraintsTest.Works/1
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -1704790491
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 11.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]:
32: NVE simulation: will use the initial temperature of 1141.954 K for
32: determining the Verlet buffer size
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 3 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 1 steps, 0.0 ps.
32: turning H bonds into constraints...
32: turning H bonds into constraints...
32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K
32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.069 0.069 100.0
32: (ns/day) (hour/ns)
32: Performance: 2.505 9.579
32: Opened /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as single precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (142 ms)
32: [ RUN ] Checking/InitialConstraintsTest.Works/2
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]:
32: Integrator method md-vv-avek is implemented primarily for validation
32: purposes; for molecular dynamics, you should probably be using md or md-vv
32:
32: Setting the LD random seed to 206517835
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 11.00
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]:
32: NVE simulation: will use the initial temperature of 1141.954 K for
32: determining the Verlet buffer size
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2.tpr, VERSION 2018 (single precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 1 steps, 0.0 ps.
32: turning H bonds into constraints...
32: turning H bonds into constraints...
32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K
32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.052 0.052 100.0
32: (ns/day) (hour/ns)
32: Performance: 3.300 7.274
32: Opened /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as single precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (125 ms)
32: [----------] 3 tests from Checking/InitialConstraintsTest (391 ms total)
32:
32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -2095081943
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0.tpr, VERSION 2018 (single precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.trr'
32:
32: trr version: GMX_trn_file (single precision)
32:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 100.0
32: (ns/day) (hour/ns)
32: Performance: 204.335 0.117
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0 (29 ms)
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -1979825139
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1.tpr, VERSION 2018 (single precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.tng'
32:
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.002 0.002 100.0
32: (ns/day) (hour/ns)
32: Performance: 76.292 0.315
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1 (30 ms)
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to 1249202556
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2.tpr, VERSION 2018 (single precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.xtc'
32:
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 100.0
32: (ns/day) (hour/ns)
32: Performance: 255.293 0.094
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2 (28 ms)
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -2067486157
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3.tpr, VERSION 2018 (single precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.gro'
32:
32: Reading frames from gro file '', 6 atoms.
32:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 100.0
32: (ns/day) (hour/ns)
32: Performance: 185.270 0.130
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3 (28 ms)
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -1622330092
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4.tpr, VERSION 2018 (single precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.pdb'
32:
32: Reading frames from pdb file
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32: 't= 0.00000', 6 atoms
32:
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 230.673 0.104
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4 (28 ms)
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -6804477
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5.tpr, VERSION 2018 (single precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.g96'
32:
32:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 100.0
32: (ns/day) (hour/ns)
32: Performance: 180.697 0.133
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5 (28 ms)
32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun (171 ms total)
32:
32: [----------] 3 tests from MdrunCanWrite/Trajectories
32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp, line 12]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to 224689885
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0.tpr, VERSION 2018 (single precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 6 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.054 0.054 100.0
32: (ns/day) (hour/ns)
32: Performance: 11.208 2.141
32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (128 ms)
32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp, line 12]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -255950059
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1.tpr, VERSION 2018 (single precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 6 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.067 0.067 100.0
32: (ns/day) (hour/ns)
32: Performance: 8.998 2.667
32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (142 ms)
32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp, line 12]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to 2104989222
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2.tpr, VERSION 2018 (single precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 6 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.059 0.059 100.0
32: (ns/day) (hour/ns)
32: Performance: 10.254 2.340
32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (134 ms)
32: [----------] 3 tests from MdrunCanWrite/Trajectories (404 ms total)
32:
32: [----------] 3 tests from MdrunCanWrite/NptTrajectories
32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to 1431531407
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0.tpr, VERSION 2018 (single precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 2 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.098 0.098 100.0
32: (ns/day) (hour/ns)
32: Performance: 2.654 9.042
32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (173 ms)
32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -678894857
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1.tpr, VERSION 2018 (single precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 2 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.175 0.175 100.0
32: (ns/day) (hour/ns)
32: Performance: 1.481 16.208
32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (250 ms)
32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -988987458
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2.tpr, VERSION 2018 (single precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 2 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.067 0.067 100.0
32: (ns/day) (hour/ns)
32: Performance: 3.848 6.238
32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (141 ms)
32: [----------] 3 tests from MdrunCanWrite/NptTrajectories (568 ms total)
32:
32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput
32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to 46426879
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.tpr, VERSION 2018 (single precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting mdrun 'spc2'
32: 1 steps, 0.0 ps.
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.079 0.079 100.0
32: (ns/day) (hour/ns)
32: Performance: 2.188 10.969
32:
Reading frame 0 time 0.000
32: # Atoms 6
32:
Reading frame 1 time 0.001
Last frame 1 time 0.001
32:
32:
32: Item #frames Timestep (ps)
32: Step 2 0.001
32: Time 2 0.001
32: Lambda 0
32: Coords 2 0.001
32: Velocities 0
32: Forces 0
32: Box 2 0.001
32: Checking file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc
32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (108 ms)
32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -323530792
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.tpr, VERSION 2018 (single precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting mdrun 'spc2'
32: 1 steps, 0.0 ps.
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.080 0.080 100.0
32: (ns/day) (hour/ns)
32: Performance: 2.169 11.063
32:
Reading frame 0 time 0.000
32: # Atoms 6
32:
Reading frame 1 time 0.001
Last frame 1 time 0.001
32:
32:
32: Item #frames Timestep (ps)
32: Step 2 0.001
32: Time 2 0.001
32: Lambda 0
32: Coords 2 0.001
32: Velocities 0
32: Forces 0
32: Box 2 0.001
32: Checking file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc
32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (109 ms)
32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -608942307
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.tpr, VERSION 2018 (single precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting mdrun 'spc2'
32: 1 steps, 0.0 ps.
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.079 0.079 100.0
32: (ns/day) (hour/ns)
32: Performance: 2.175 11.034
32:
Reading frame 0 time 0.000
32: # Atoms 3
32:
Reading frame 1 time 0.001
Last frame 1 time 0.001
32:
32:
32: Item #frames Timestep (ps)
32: Step 2 0.001
32: Time 2 0.001
32: Lambda 0
32: Coords 2 0.001
32: Velocities 0
32: Forces 0
32: Box 2 0.001
32: Checking file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc
32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (109 ms)
32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (326 ms total)
32:
32: [----------] Global test environment tear-down
32: [==========] 29 tests from 11 test cases ran. (15767 ms total)
32: [ PASSED ] 29 tests.
32/33 Test #32: MdrunTests ....................... Passed 15.79 sec
test 33
Start 33: MdrunMpiTests
33: Test command: /<<PKGBUILDDIR>>/build/basic/bin/mdrun-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic/Testing/Temporary/MdrunMpiTests.xml"
33: Test timeout computed to be: 600
33: [==========] Running 3 tests from 3 test cases.
33: [----------] Global test environment set-up.
33: [----------] 1 test from MultiSimTerminationTest
33: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts
33: [ OK ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (0 ms)
33: [----------] 1 test from MultiSimTerminationTest (0 ms total)
33:
33: [----------] 1 test from ReplicaExchangeTerminationTest
33: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts
33: [ OK ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (0 ms)
33: [----------] 1 test from ReplicaExchangeTerminationTest (0 ms total)
33:
33: [----------] 1 test from DomainDecompositionSpecialCasesTest
33: [ RUN ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks
33:
33: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]:
33: For a correct single-point energy evaluation with nsteps = 0, use
33: continuation = yes to avoid constraining the input coordinates.
33:
33: Setting the LD random seed to -1117711761
33: Generated 3 of the 3 non-bonded parameter combinations
33: Generating 1-4 interactions: fudge = 0.5
33: Generated 3 of the 3 1-4 parameter combinations
33: Excluding 2 bonded neighbours molecule type 'SOL'
33: Removing all charge groups because cutoff-scheme=Verlet
33: Number of degrees of freedom in T-Coupling group rest is 9.00
33:
33: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]:
33: NVE simulation with an initial temperature of zero: will use a Verlet
33: buffer of 10%. Check your energy drift!
33:
33:
33: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]:
33: You are using a plain Coulomb cut-off, which might produce artifacts.
33: You might want to consider using PME electrostatics.
33:
33:
33:
33: There were 3 notes
33: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
33: Reading file /<<PKGBUILDDIR>>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks.tpr, VERSION 2018 (single precision)
33: Can not increase nstlist because an NVE ensemble is used
33:
33: NOTE: disabling dynamic load balancing as cycle counters unsupported or not enabled in the operating system kernel.
33:
33: No option -multi
33: No option -multi
33: Using 2 MPI threads
33: Using 1 OpenMP thread per tMPI thread
33:
33:
33: NOTE: The number of threads is not equal to the number of (logical) cores
33: and the -pin option is set to auto: will not pin threads to cores.
33: This can lead to significant performance degradation.
33: Consider using -pin on (and -pinoffset in case you run multiple jobs).
33:
33: WARNING: Using the slow plain C kernels. This should
33: not happen during routine usage on supported platforms.
33: starting mdrun 'spc2'
33: 0 steps, 0.0 ps.
33:
33: Core t (s) Wall t (s) (%)
33: Time: 0.001 0.001 199.8
33: (ns/day) (hour/ns)
33: Performance: 136.236 0.176
33: This run will generate roughly 0 Mb of data
33: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (34 ms)
33: [----------] 1 test from DomainDecompositionSpecialCasesTest (34 ms total)
33:
33: [----------] Global test environment tear-down
33: [==========] 3 tests from 3 test cases ran. (34 ms total)
33: [ PASSED ] 3 tests.
33:
33: YOU HAVE 4 DISABLED TESTS
33:
33/33 Test #33: MdrunMpiTests .................... Passed 0.05 sec
100% tests passed, 0 tests failed out of 33
Label Time Summary:
GTest = 21.12 sec (33 tests)
IntegrationTest = 15.92 sec (3 tests)
MpiTest = 0.12 sec (3 tests)
UnitTest = 5.20 sec (30 tests)
Total Test time (real) = 21.18 sec
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/datatest.cpp
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[ 1%] Built target onlinehelp-test-shared
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/mock_datamodule.cpp
/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/datatest.h:46,
from /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/datatest.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&}; _Tp = gmx::test::AnalysisDataTestInputPointSet::Value; _Alloc = std::allocator<gmx::test::AnalysisDataTestInputPointSet::Value>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::test::AnalysisDataTestInputPointSet::Value>::iterator {aka __gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&}; _Tp = gmx::test::AnalysisDataTestInputPointSet::Value; _Alloc = std::allocator<gmx::test::AnalysisDataTestInputPointSet::Value>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::test::AnalysisDataTestInputPointSet::Value>::iterator {aka __gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::AnalysisDataTestInputFrame::addPointSetWithValues(int, int, real)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::AnalysisDataTestInputFrame::addPointSetWithValueAndError(int, int, real, real)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::AnalysisDataTestInputFrame::addPointSetWithValues(int, int, real, real)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::AnalysisDataTestInputFrame::addPointSetWithValues(int, int, real, real, real)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::test::AnalysisDataTestInputFrame}; _Tp = gmx::test::AnalysisDataTestInputFrame; _Alloc = std::allocator<gmx::test::AnalysisDataTestInputFrame>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::test::AnalysisDataTestInputFrame>::iterator {aka __gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputFrame*, std::vector<gmx::test::AnalysisDataTestInputFrame> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'gmx::test::AnalysisDataTestInputFrame& gmx::test::AnalysisDataTestInput::addFrame(real)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputFrame*, std::vector<gmx::test::AnalysisDataTestInputFrame> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::AnalysisDataTestInput::addFrameWithValues(real, real, real)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputFrame*, std::vector<gmx::test::AnalysisDataTestInputFrame> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::AnalysisDataTestInput::addFrameWithValueAndError(real, real, real)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputFrame*, std::vector<gmx::test::AnalysisDataTestInputFrame> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::AnalysisDataTestInput::addFrameWithValues(real, real)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputFrame*, std::vector<gmx::test::AnalysisDataTestInputFrame> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 78%] Built target libgromacs
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::AnalysisDataTestInput::addFrameWithValues(real, real, real, real)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputFrame*, std::vector<gmx::test::AnalysisDataTestInputFrame> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::test::AnalysisDataTestInputPointSet::Value*, std::vector<gmx::test::AnalysisDataTestInputPointSet::Value> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/external/gmock-1.7.0 && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build/basic-dp/src/external/gmock-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o
/usr/bin/ranlib ../../../lib/libgmock.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 78%] Built target gmock
/usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/testutils /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/testutils /<<PKGBUILDDIR>>/build/basic-dp/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color=
Scanning dependencies of target testutils
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/cmdlinetest.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/conftest.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/filematchers.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/interactivetest.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 78%] Built target analysisdata-test-shared
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/loggertest.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/mpi-printer.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/mpitest.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/refdata.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/refdata-xml.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/stdiohelper.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/stringtest.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testasserts.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testfilemanager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testfileredirector.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testinit.cpp
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake
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cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/settle.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.3.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 80%] Built target testutils-mpi-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/refdata_tests.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/multisimtest.cpp
/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/applied-forces/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/applied-forces/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color=
Scanning dependencies of target applied-forces-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/applied-forces/tests/electricfield.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/replicaexchange.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/settle.cpp:38:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/settle.cpp:38:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void gmx::test::SettleTest_SatisfiesConstraints_Test::TestBody()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/settle.cpp:38:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 81%] Built target applied-forces-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/shake.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/domain_decomposition.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/testasserts_tests.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/simulationsignal.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 81%] Built target mdrun-mpi-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/xvgtest_tests.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/listed-forces/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/listed-forces/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color=
Scanning dependencies of target listed-forces-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/tests/bonded.cpp
/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/commandline/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color=
Scanning dependencies of target commandline-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.3.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 82%] Built target testutils-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 83%] Built target mdlib-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp
/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/ewald/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color=
Scanning dependencies of target ewald-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmebsplinetest.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 83%] Built target listed-forces-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmegathertest.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesolvetest.cpp
/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/fft/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fft/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color=
Scanning dependencies of target fft-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/tests/fft.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-port.h:653,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-linked_ptr.h:74,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-port.h:45,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-generated-internal-utils.h:44,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-internal-utils.h:45,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock-actions.h:46,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock.h:58,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmegathertest.cpp:47:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:383:7: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
vector(initializer_list<value_type> __l,
^~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-port.h:653,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-linked_ptr.h:74,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-port.h:45,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-generated-internal-utils.h:44,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-internal-utils.h:45,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock-actions.h:46,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock.h:58,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmegathertest.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-port.h:653,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-linked_ptr.h:74,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-port.h:45,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-generated-internal-utils.h:44,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-internal-utils.h:45,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock-actions.h:46,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock.h:58,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmegathertest.cpp:47:
/usr/include/c++/7/bits/stl_vector.h: In static member function 'static void gmx::test::{anonymous}::PmeGatherTest::SetUpTestCase()':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmegathertest.cpp: In function 'void __static_initialization_and_destruction_0(int, int)':
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmegathertest.cpp:97:1: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
};
^
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmegathertest.cpp:165:1: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
};
^
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmegathertest.cpp:174:1: note: parameter passing for argument of type 'std::initializer_list<double>' changed in GCC 7.1
};
^
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp
In file included from /usr/include/c++/7/map:61:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock-spec-builders.h:63,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock-generated-function-mockers.h:43,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock.h:61,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesolvetest.cpp:47:
/usr/include/c++/7/bits/stl_map.h: In constructor 'std::map<_Key, _Tp, _Compare, _Alloc>::map(std::initializer_list<std::pair<const K, V> >, const _Compare&, const allocator_type&) [with _Key = gmx::BasicVector<int>; _Tp = t_complex; _Compare = std::less<gmx::BasicVector<int> >; _Alloc = std::allocator<std::pair<const gmx::BasicVector<int>, t_complex> >]':
/usr/include/c++/7/bits/stl_map.h:220:7: note: parameter passing for argument of type 'std::initializer_list<std::pair<const gmx::BasicVector<int>, t_complex> >' changed in GCC 7.1
map(initializer_list<value_type> __l,
^~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlineparser.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 84%] Built target fft-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesolvetest.cpp: In function 'void __static_initialization_and_destruction_0(int, int)':
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesolvetest.cpp:348:1: note: parameter passing for argument of type 'std::initializer_list<std::pair<const gmx::BasicVector<int>, t_complex> >' changed in GCC 7.1
};
^
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesolvetest.cpp:348:1: note: parameter passing for argument of type 'std::initializer_list<std::pair<const gmx::BasicVector<int>, t_complex> >' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmetestcommon.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/testhardwarecontexts.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/pargs.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-port.h:653,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-linked_ptr.h:74,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-port.h:45,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-generated-internal-utils.h:44,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/internal/gmock-internal-utils.h:45,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock-actions.h:46,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include/gmock/gmock.h:58,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:47:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator<const gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >; <template-parameter-2-2> = void; _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/stl_vector.h:411:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
vector(_InputIterator __first, _InputIterator __last,
^~~~~~
/usr/include/c++/7/bits/stl_vector.h:411:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:411:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color=
Scanning dependencies of target gpu_utils-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests/gputest.cpp
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp: In function 'void __static_initialization_and_destruction_0(int, int)':
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:332:121: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
static CoordinatesVector const c_sampleCoordinates1(c_sampleCoordinatesFull.begin(), c_sampleCoordinatesFull.begin() + 1);
^
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:334:125: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
static CoordinatesVector const c_sampleCoordinates2(c_sampleCoordinatesFull.begin() + 1, c_sampleCoordinatesFull.begin() + 3);
^
/<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:336:127: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
static CoordinatesVector const c_sampleCoordinates13(c_sampleCoordinatesFull.begin() + 3, c_sampleCoordinatesFull.begin() + 16);
^
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests/hostallocator.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests/devicetransfers.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/hardware/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/hardware/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color=
Scanning dependencies of target hardware-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/tests/hardwaretopology.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 85%] Built target commandline-test
/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/math/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color=
Scanning dependencies of target math-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/tests/functions.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 85%] Built target ewald-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/tests/invertmatrix.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/tests/vectypes.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 86%] Built target gpu_utils-test
/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color=
Scanning dependencies of target mdrunutility-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests/threadaffinity.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/math/tests/vectypes.cpp:50:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int, int, int}; _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::RVecTest_CanBeStoredInVector_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::RVecTest_ConvertsImplicitlyTo_rvec_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::RVecTest_WorksAsMutable_rvec_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::RVecTest_WorksAs_rvec_Array_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double (&)[3]}; _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::RVecTest_ConvertsImplicitlyFrom_rvec_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color=
Scanning dependencies of target mdrunutility-mpi-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 86%] Built target hardware-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 86%] Built target math-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color=
Scanning dependencies of target onlinehelp-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests/helpformat.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests/helpmanager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 86%] Built target mdrunutility-test
/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/options/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color=
Scanning dependencies of target options-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/abstractoptionstorage.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 87%] Built target mdrunutility-mpi-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/filenameoption.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/filenameoptionmanager.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 88%] Built target onlinehelp-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/option.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/optionsassigner.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/repeatingsection.cpp
/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/random/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color=
Scanning dependencies of target random-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/exponentialdistribution.cpp
/usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/tables/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/tables/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color=
Scanning dependencies of target table-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/random/tests/exponentialdistribution.cpp:45:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::ExponentialDistributionTest_Output_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/taskassignment/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/taskassignment/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color=
Scanning dependencies of target taskassignment-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/tests/usergpuids.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/gammadistribution.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/timeunitmanager.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/random/tests/gammadistribution.cpp:45:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]':
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]':
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}},
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}},
^~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::GammaDistributionTest_Output_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/normaldistribution.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/treesupport.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 88%] Built target taskassignment-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/random/tests/normaldistribution.cpp:45:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::NormalDistributionTest_Output_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/utility/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color=
Scanning dependencies of target utility-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/alignedallocator.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 89%] Built target table-test
/usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/fileio/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color=
Scanning dependencies of target fileio-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tests/confio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/seed.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/fileio/tests/confio.cpp:48:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int, int, int}; _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'testing::Test* testing::internal::ParameterizedTestFactory<TestClass>::CreateTest() [with TestClass = {anonymous}::StructureIORoundtripTest_ReadWriteTpsConf_Test]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/tabulatednormaldistribution.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tests/readinp.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 90%] Built target options-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tests/tngio.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/arrayref.cpp
/usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/pulling/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/pulling/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color=
Scanning dependencies of target pull-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/tests/pull.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/random/tabulatednormaldistribution.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/random/tests/tabulatednormaldistribution.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::TabulatedNormalDistributionTest_OutputDouble14_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 90%] Built target fileio-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/bitmask32.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 90%] Built target pull-test
/usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/awh/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color=
Scanning dependencies of target awh-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/c++/7/bits/random.h:34,
from /usr/include/c++/7/random:49,
from /<<PKGBUILDDIR>>/src/gromacs/random/seed.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/random/threefry.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:43:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/7/bits/stl_vector.h:383:7: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
vector(initializer_list<value_type> __l,
^~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/tests/biasstate.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.h:55,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp: In function '(static initializers for /<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp)':
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:119:44: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
}};
^
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:131:43: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
}};
^
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:142:42: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
}};
^
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.h:55,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp:37:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void gmx::test::BiasTest_ForcesBiasPmf_Test::TestBody()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.h:55,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp:37:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/uniformintdistribution.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.h:57,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/biasstate.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::test::BiasStateTest::BiasStateTest()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'testing::Test* testing::internal::ParameterizedTestFactory<TestClass>::CreateTest() [with TestClass = gmx::test::BiasTest_ForcesBiasPmf_Test]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::test::BiasTest_DetectsCovering_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/uniformrealdistribution.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/tests/grid.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/bitmask64.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/random/tests/uniformrealdistribution.cpp:45:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::UniformRealDistributionTest_Output_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/dimparams.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.h:60,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/grid.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::test::gridTest_neighborhood_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 91%] Built target random-test
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/simd/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color=
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Scanning dependencies of target simd-test
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[ 91%] Built target awh-test
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxana/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/bootstrap_loadstore.cpp
Scanning dependencies of target gmxana-test
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests/gmx_traj.cpp
/usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color=
Scanning dependencies of target gmxpreprocess-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tests/genconf.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/base.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests/gmx_trjconv.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/data.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tests/readir.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_floatingpoint.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxpreprocess/tests/solvate.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 91%] Built target gmxana-test
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color=
Scanning dependencies of target correlations-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests/autocorr.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_vector_operations.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests/autocorr.cpp:51:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacP0_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacP4_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacNormal_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacNoNormalize_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_math.cpp
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacP3_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacP1_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacP2_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacCos_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacVector_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacRcross_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/bitmask128.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 91%] Built target gmxpreprocess-test
/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_memory.cpp
Scanning dependencies of target analysisdata-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/analysisdata.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests/correlationdataset.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests/expfit.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_integer.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/correlationfunctions/tests/expfit.cpp:49:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp
/usr/include/c++/7/bits/vector.tcc: In static member function 'static void gmx::{anonymous}::ExpfitTest::SetUpTestCase()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4_floatingpoint.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4_vector_operations.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 92%] Built target correlations-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4_math.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/arraydata.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/scalar.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/keyvaluetreetransform.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/average.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/histogram.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/scalar_util.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/analysisdata/tests/lifetime.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/scalar_math.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/logger.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/mutex.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 92%] Built target analysisdata-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/path.cpp
/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/selection/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color=
Scanning dependencies of target selection-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/indexutil.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 93%] Built target simd-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/stringutil.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/textreader.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const {anonymous}::NeighborhoodSearchTestData::RefPair&}; _Tp = {anonymous}::NeighborhoodSearchTestData::RefPair; _Alloc = std::allocator<{anonymous}::NeighborhoodSearchTestData::RefPair>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair>::iterator {aka __gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/stl_vector.h: In function 'void {anonymous}::NeighborhoodSearchTestData::computeReferencesInternal(t_pbc*, bool)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color=
Scanning dependencies of target trajectoryanalysis-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/moduletest.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double (&)[3]}; _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'gmx::AnalysisNeighborhoodPositions {anonymous}::NeighborhoodSearchTestData::testPositions() const':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function 'void {anonymous}::NeighborhoodSearchTest::testPairSearch(gmx::AnalysisNeighborhoodSearch*, const {anonymous}::NeighborhoodSearchTestData&)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::BasicVector<double>}; _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_SimpleSelfPairsSearch_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_HandlesNoPBC_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function 'void {anonymous}::NeighborhoodSearchTestData::generateRandomRefPositions(int)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/stl_vector.h: In static member function 'static const {anonymous}::NeighborhoodSearchTestData& {anonymous}::RandomBoxFullPBCData::get()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_GridSelfPairsSearch_Test::TestBody()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_SimpleSearchXY_Test::TestBody()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_GridSearchTriclinic_Test::TestBody()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_GridSearch2DPBC_Test::TestBody()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_GridSearchXYBox_Test::TestBody()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_HandlesConcurrentSearches_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_HandlesSkippingPairs_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/selection/nbsearch.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/selection/tests/nbsearch.cpp:49:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_HandlesNullPBC_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/poscalc.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/angle.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/selectioncollection.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/selectionoption.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/textwriter.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/typetraits.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/distance.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/freevolume.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 95%] Built target utility-test
/usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/energyanalysis/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color=
Scanning dependencies of target energyanalysis-test
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/legacyenergy.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/pairdist.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/rdf.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 95%] Built target energyanalysis-test
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/compat/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/compat/tests /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/sasa.cpp
Scanning dependencies of target compat-test
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/compat/tests/make_unique.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/programs/mdrun/tests /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color=
Scanning dependencies of target mdrun-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/select.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/selection/tests/toputils.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 95%] Built target compat-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/grompp.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/trajectory.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/initialconstraints.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 96%] Built target selection-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/rerun.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/rerun.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/trajectory_writing.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&}; _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_ComputesSinglePoint_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_ComputesTwoPoints_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_ComputesTwoPointsOfUnequalRadius_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_SurfacePoints12_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_SurfacePoints32_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_SurfacePoints42_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_SurfacePoints122_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_Computes100Points_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/unionfind.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_Computes100PointsWithRectangularPBC_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/trajectoryreader.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_Computes100PointsWithTriclinicPBC_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41,
from /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/compressed_x_output.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/swapcoords.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/interactiveMD.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/termination.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/tests/pmetest.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/basic-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[ 97%] Built target trajectoryanalysis-test
cd /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/rerun.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[100%] Built target mdrun-test
/usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
cd /<<PKGBUILDDIR>>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp /<<PKGBUILDDIR>>/build/basic-dp/CMakeFiles/tests.dir/DependInfo.cmake --color=
Scanning dependencies of target tests
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/basic-dp'
make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
[100%] Built target tests
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/basic-dp/CMakeFiles 0
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/build/basic-dp'
(cd build/basic-dp; LD_LIBRARY_PATH=/<<PKGBUILDDIR>>/build/basic-dp/lib ctest -V)
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/build/basic-dp/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/build/basic-dp/DartConfiguration.tcl
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/build/basic-dp/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/build/basic-dp/DartConfiguration.tcl
Test project /<<PKGBUILDDIR>>/build/basic-dp
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
Start 1: TestUtilsUnitTests
1: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/testutils-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/TestUtilsUnitTests.xml"
1: Test timeout computed to be: 30
1: [==========] Running 59 tests from 5 test cases.
1: [----------] Global test environment set-up.
1: [----------] 10 tests from InteractiveTestHelperTest
1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession
1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms)
1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline
1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (2 ms)
1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput
1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput
1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput
1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput
1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (2 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput
1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput
1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput
1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput
1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms)
1: [----------] 10 tests from InteractiveTestHelperTest (15 ms total)
1:
1: [----------] 34 tests from ReferenceDataTest
1: [ RUN ] ReferenceDataTest.HandlesSimpleData
1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData
1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks
1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesStringBlockData
1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesVectorData
1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesSequenceData
1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData
1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesIncorrectData
1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType
1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMissingData
1: [ OK ] ReferenceDataTest.HandlesMissingData (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUncheckedData
1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence
1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound
1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesVariants
1: [ OK ] ReferenceDataTest.HandlesVariants (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree
1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey
1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey
1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue
1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (2 ms)
1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType
1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile
1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings
1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace
1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings
1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock
1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices
1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData
1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds
1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds
1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesReadingValues
1: [ OK ] ReferenceDataTest.HandlesReadingValues (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms)
1: [----------] 34 tests from ReferenceDataTest (22 ms total)
1:
1: [----------] 7 tests from FloatingPointDifferenceTest
1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues
1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues
1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign
1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero
1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences
1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero
1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN
1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms)
1: [----------] 7 tests from FloatingPointDifferenceTest (1 ms total)
1:
1: [----------] 4 tests from FloatingPointToleranceTest
1: [ RUN ] FloatingPointToleranceTest.UlpTolerance
1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms)
1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint
1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms)
1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp
1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms)
1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance
1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms)
1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total)
1:
1: [----------] 4 tests from XvgTests
1: [ RUN ] XvgTests.CreateFile
1: [ OK ] XvgTests.CreateFile (1 ms)
1: [ RUN ] XvgTests.CheckMissing
1: [ OK ] XvgTests.CheckMissing (1 ms)
1: [ RUN ] XvgTests.CheckExtra
1: [ OK ] XvgTests.CheckExtra (1 ms)
1: [ RUN ] XvgTests.ReadIncorrect
1: [ OK ] XvgTests.ReadIncorrect (1 ms)
1: [----------] 4 tests from XvgTests (4 ms total)
1:
1: [----------] Global test environment tear-down
1: [==========] 59 tests from 5 test cases ran. (42 ms total)
1: [ PASSED ] 59 tests.
1/33 Test #1: TestUtilsUnitTests ............... Passed 0.06 sec
test 2
Start 2: TestUtilsMpiUnitTests
2: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/testutils-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/TestUtilsMpiUnitTests.xml"
2: Test timeout computed to be: 30
2: [==========] Running 1 test from 1 test case.
2: [----------] Global test environment set-up.
2: [----------] 1 test from MpiSelfTest
2: [ RUN ] MpiSelfTest.Runs
2: [ OK ] MpiSelfTest.Runs (0 ms)
2: [----------] 1 test from MpiSelfTest (0 ms total)
2:
2: [----------] Global test environment tear-down
2: [==========] 1 test from 1 test case ran. (1 ms total)
2: [ PASSED ] 1 test.
2/33 Test #2: TestUtilsMpiUnitTests ............ Passed 0.02 sec
test 3
Start 3: MdlibUnitTest
3: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/mdlib-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/MdlibUnitTest.xml"
3: Test timeout computed to be: 30
3: [==========] Running 37 tests from 5 test cases.
3: [----------] Global test environment set-up.
3: [----------] 1 test from VerletBufferConstraintTest
3: [ RUN ] VerletBufferConstraintTest.EqualMasses
3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms)
3: [----------] 1 test from VerletBufferConstraintTest (0 ms total)
3:
3: [----------] 4 tests from ShakeTest
3: [ RUN ] ShakeTest.ConstrainsOneBond
3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms)
3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds
3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms)
3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom
3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms)
3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms
3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms)
3: [----------] 4 tests from ShakeTest (0 ms total)
3:
3: [----------] 1 test from NullSignalTest
3: [ RUN ] NullSignalTest.NullSignallerWorks
3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms)
3: [----------] 1 test from NullSignalTest (0 ms total)
3:
3: [----------] 7 tests from SignalTest
3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace
3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms)
3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace
3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms)
3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace
3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms)
3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace
3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms)
3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace
3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (1 ms)
3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace
3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms)
3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace
3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms)
3: [----------] 7 tests from SignalTest (1 ms total)
3:
3: [----------] 24 tests from WithParameters/SettleTest
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms)
3: [----------] 24 tests from WithParameters/SettleTest (1 ms total)
3:
3: [----------] Global test environment tear-down
3: [==========] 37 tests from 5 test cases ran. (2 ms total)
3: [ PASSED ] 37 tests.
3/33 Test #3: MdlibUnitTest .................... Passed 0.02 sec
test 4
Start 4: AppliedForcesUnitTest
4: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/applied-forces-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/AppliedForcesUnitTest.xml"
4: Test timeout computed to be: 30
4: [==========] Running 3 tests from 1 test case.
4: [----------] Global test environment set-up.
4: [----------] 3 tests from ElectricFieldTest
4: [ RUN ] ElectricFieldTest.Static
4: [ OK ] ElectricFieldTest.Static (0 ms)
4: [ RUN ] ElectricFieldTest.Oscillating
4: [ OK ] ElectricFieldTest.Oscillating (0 ms)
4: [ RUN ] ElectricFieldTest.Pulsed
4: [ OK ] ElectricFieldTest.Pulsed (0 ms)
4: [----------] 3 tests from ElectricFieldTest (1 ms total)
4:
4: [----------] Global test environment tear-down
4: [==========] 3 tests from 1 test case ran. (1 ms total)
4: [ PASSED ] 3 tests.
4/33 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec
test 5
Start 5: ListedForcesTest
5: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/listed-forces-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/ListedForcesTest.xml"
5: Test timeout computed to be: 30
5: [==========] Running 15 tests from 1 test case.
5: [----------] Global test environment set-up.
5: [----------] 15 tests from BondedTest
5: [ RUN ] BondedTest.BondAnglePbcNone
5: [ OK ] BondedTest.BondAnglePbcNone (0 ms)
5: [ RUN ] BondedTest.BondAnglePbcXy
5: [ OK ] BondedTest.BondAnglePbcXy (0 ms)
5: [ RUN ] BondedTest.BondAnglePbcXyz
5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms)
5: [ RUN ] BondedTest.DihedralAnglePbcNone
5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms)
5: [ RUN ] BondedTest.DihedralAnglePbcXy
5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms)
5: [ RUN ] BondedTest.DihedralAnglePbcXyz
5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms)
5: [ RUN ] BondedTest.IfuncBondsPbcNo
5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms)
5: [ RUN ] BondedTest.IfuncBondsPbcXy
5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms)
5: [ RUN ] BondedTest.IfuncBondsPbcXyz
5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms)
5: [ RUN ] BondedTest.IfuncAnglesPbcNo
5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms)
5: [ RUN ] BondedTest.IfuncAnglesPbcXy
5: [ OK ] BondedTest.IfuncAnglesPbcXy (1 ms)
5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ
5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms)
5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo
5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms)
5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy
5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms)
5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz
5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms)
5: [----------] 15 tests from BondedTest (2 ms total)
5:
5: [----------] Global test environment tear-down
5: [==========] 15 tests from 1 test case ran. (2 ms total)
5: [ PASSED ] 15 tests.
5/33 Test #5: ListedForcesTest ................. Passed 0.02 sec
test 6
Start 6: CommandLineUnitTests
6: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/commandline-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/CommandLineUnitTests.xml"
6: Test timeout computed to be: 30
6: [==========] Running 57 tests from 6 test cases.
6: [----------] Global test environment set-up.
6: [----------] 3 tests from CommandLineHelpModuleTest
6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp
6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms)
6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic
6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms)
6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp
6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (3 ms)
6: [----------] 3 tests from CommandLineHelpModuleTest (4 ms total)
6:
6: [----------] 6 tests from CommandLineHelpWriterTest
6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes
6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables
6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions
6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions
6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (1 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups
6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText
6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms)
6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total)
6:
6: [----------] 6 tests from CommandLineModuleManagerTest
6: [ RUN ] CommandLineModuleManagerTest.RunsModule
6: [ OK ] CommandLineModuleManagerTest.RunsModule (1 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (1 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms)
6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames
6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms)
6: [----------] 6 tests from CommandLineModuleManagerTest (2 ms total)
6:
6: [----------] 13 tests from CommandLineParserTest
6: [ RUN ] CommandLineParserTest.HandlesSingleValues
6: [ OK ] CommandLineParserTest.HandlesSingleValues (1 ms)
6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument
6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument
6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms)
6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument
6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers
6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesString
6: [ OK ] CommandLineParserTest.HandlesString (0 ms)
6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues
6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix
6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers
6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown
6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms)
6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault
6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms)
6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments
6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms)
6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions
6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms)
6: [----------] 13 tests from CommandLineParserTest (2 ms total)
6:
6: [----------] 6 tests from CommandLineProgramContextTest
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath
6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath
6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms)
6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total)
6:
6: [----------] 23 tests from ParseCommonArgsTest
6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs
6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args
6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs
6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs
6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (1 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs
6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs
6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs
6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit
6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs
6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs
6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults
6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName
6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension
6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles
6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles
6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (1 ms)
6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified
6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles
6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms)
6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension
6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (1 ms)
6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile
6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms)
6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName
6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (2 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode
6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName
6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms)
6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs
6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms)
6: [----------] 23 tests from ParseCommonArgsTest (5 ms total)
6:
6: [----------] Global test environment tear-down
6: [==========] 57 tests from 6 test cases ran. (15 ms total)
6: [ PASSED ] 57 tests.
6/33 Test #6: CommandLineUnitTests ............. Passed 0.04 sec
test 7
Start 7: EwaldUnitTests
7: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/ewald-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/EwaldUnitTests.xml"
7: Test timeout computed to be: 30
7: [==========] Running 257 tests from 10 test cases.
7: [----------] Global test environment set-up.
7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (1 ms)
7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total)
7:
7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (8 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (5 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (5 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (4 ms)
7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (110 ms total)
7:
7: [----------] 144 tests from SaneInput/PmeGatherTest
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms)
7: [----------] 144 tests from SaneInput/PmeGatherTest (155 ms total)
7:
7: [----------] 16 tests from SaneInput/PmeSolveTest
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (4 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (5 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (5 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (5 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (5 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (4 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (3 ms)
7: [----------] 16 tests from SaneInput/PmeSolveTest (55 ms total)
7:
7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (3 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (3 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (3 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (2 ms)
7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (19 ms total)
7:
7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (3 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (3 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (3 ms)
7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (32 ms total)
7:
7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (5 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (5 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (5 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (5 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (3 ms)
7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (52 ms total)
7:
7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms)
7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (42 ms total)
7:
7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (5 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (5 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (4 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (5 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms)
7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (51 ms total)
7:
7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (6 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (7 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (10 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (11 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (14 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (15 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (6 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (7 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (9 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (11 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (13 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (15 ms)
7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (140 ms total)
7:
7: [----------] Global test environment tear-down
7: [==========] 257 tests from 10 test cases ran. (676 ms total)
7: [ PASSED ] 257 tests.
7/33 Test #7: EwaldUnitTests ................... Passed 0.77 sec
test 8
Start 8: FFTUnitTests
8: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/fft-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/FFTUnitTests.xml"
8: Test timeout computed to be: 30
8: [==========] Running 14 tests from 4 test cases.
8: [----------] Global test environment set-up.
8: [----------] 2 tests from ManyFFTTest
8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test
8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (6 ms)
8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test
8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (11 ms)
8: [----------] 2 tests from ManyFFTTest (17 ms total)
8:
8: [----------] 1 test from FFTTest
8: [ RUN ] FFTTest.Real2DLength18_15Test
8: [ OK ] FFTTest.Real2DLength18_15Test (3 ms)
8: [----------] 1 test from FFTTest (4 ms total)
8:
8: [----------] 1 test from FFFTest3D
8: [ RUN ] FFFTest3D.Real5_6_9
8: [ OK ] FFFTest3D.Real5_6_9 (2 ms)
8: [----------] 1 test from FFFTest3D (2 ms total)
8:
8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (2 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (6 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (9 ms)
8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (23 ms total)
8:
8: [----------] Global test environment tear-down
8: [==========] 14 tests from 4 test cases ran. (47 ms total)
8: [ PASSED ] 14 tests.
8/33 Test #8: FFTUnitTests ..................... Passed 0.06 sec
test 9
Start 9: GpuUtilsUnitTests
9: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/gpu_utils-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/GpuUtilsUnitTests.xml"
9: Test timeout computed to be: 30
9: [==========] Running 30 tests from 6 test cases.
9: [----------] Global test environment set-up.
9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int
9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks
9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks
9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork
9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms)
9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve
9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms)
9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda
9:
9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
9: [ OK ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda (2 ms)
9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda
9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms)
9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory
9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms)
9: [----------] 7 tests from HostAllocatorTest/0 (3 ms total)
9:
9: [----------] 7 tests from HostAllocatorTest/1, where TypeParam = double
9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks
9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks
9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork
9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms)
9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve
9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms)
9: [ RUN ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda
9:
9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
9: [ OK ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda (2 ms)
9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda
9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms)
9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory
9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms)
9: [----------] 7 tests from HostAllocatorTest/1 (2 ms total)
9:
9: [----------] 7 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector<double>
9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks
9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks
9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork
9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms)
9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve
9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms)
9: [ RUN ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda
9:
9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
9: [ OK ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda (2 ms)
9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda
9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms)
9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory
9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms)
9: [----------] 7 tests from HostAllocatorTest/2 (2 ms total)
9:
9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator<double, gmx::HostAllocationPolicy>
9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment
9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment
9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment
9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms)
9: [----------] 3 tests from AllocatorTest/0 (0 ms total)
9:
9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator<int, gmx::HostAllocationPolicy>
9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment
9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment
9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment
9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms)
9: [----------] 3 tests from AllocatorTest/1 (1 ms total)
9:
9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator<gmx::BasicVector<double>, gmx::HostAllocationPolicy>
9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment
9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment
9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment
9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms)
9: [----------] 3 tests from AllocatorTest/2 (0 ms total)
9:
9: [----------] Global test environment tear-down
9: [==========] 30 tests from 6 test cases ran. (8 ms total)
9: [ PASSED ] 30 tests.
9/33 Test #9: GpuUtilsUnitTests ................ Passed 0.03 sec
test 10
Start 10: HardwareUnitTests
10: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/hardware-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/HardwareUnitTests.xml"
10: Test timeout computed to be: 30
10: [==========] Running 4 tests from 1 test case.
10: [----------] Global test environment set-up.
10: [----------] 4 tests from HardwareTopologyTest
10: [ RUN ] HardwareTopologyTest.Execute
10: [ OK ] HardwareTopologyTest.Execute (11 ms)
10: [ RUN ] HardwareTopologyTest.HwlocExecute
10: [ OK ] HardwareTopologyTest.HwlocExecute (9 ms)
10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency
10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (10 ms)
10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency
10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (9 ms)
10: [----------] 4 tests from HardwareTopologyTest (39 ms total)
10:
10: [----------] Global test environment tear-down
10: [==========] 4 tests from 1 test case ran. (39 ms total)
10: [ PASSED ] 4 tests.
10/33 Test #10: HardwareUnitTests ................ Passed 0.05 sec
test 11
Start 11: MathUnitTests
11: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/math-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/MathUnitTests.xml"
11: Test timeout computed to be: 30
11: [==========] Running 31 tests from 4 test cases.
11: [----------] Global test environment set-up.
11: [----------] 21 tests from FunctionTest
11: [ RUN ] FunctionTest.StaticLog2
11: [ OK ] FunctionTest.StaticLog2 (0 ms)
11: [ RUN ] FunctionTest.Log2I32Bit
11: [ OK ] FunctionTest.Log2I32Bit (1 ms)
11: [ RUN ] FunctionTest.Log2I64Bit
11: [ OK ] FunctionTest.Log2I64Bit (0 ms)
11: [ RUN ] FunctionTest.GreatestCommonDivisor
11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms)
11: [ RUN ] FunctionTest.InvsqrtFloat
11: [ OK ] FunctionTest.InvsqrtFloat (0 ms)
11: [ RUN ] FunctionTest.InvsqrtDouble
11: [ OK ] FunctionTest.InvsqrtDouble (0 ms)
11: [ RUN ] FunctionTest.InvsqrtInteger
11: [ OK ] FunctionTest.InvsqrtInteger (0 ms)
11: [ RUN ] FunctionTest.InvcbrtFloat
11: [ OK ] FunctionTest.InvcbrtFloat (0 ms)
11: [ RUN ] FunctionTest.InvcbrtDouble
11: [ OK ] FunctionTest.InvcbrtDouble (0 ms)
11: [ RUN ] FunctionTest.InvcbrtInteger
11: [ OK ] FunctionTest.InvcbrtInteger (0 ms)
11: [ RUN ] FunctionTest.SixthrootFloat
11: [ OK ] FunctionTest.SixthrootFloat (0 ms)
11: [ RUN ] FunctionTest.SixthrootDouble
11: [ OK ] FunctionTest.SixthrootDouble (0 ms)
11: [ RUN ] FunctionTest.SixthrootInteger
11: [ OK ] FunctionTest.SixthrootInteger (1 ms)
11: [ RUN ] FunctionTest.InvsixthrootFloat
11: [ OK ] FunctionTest.InvsixthrootFloat (0 ms)
11: [ RUN ] FunctionTest.InvsixthrootDouble
11: [ OK ] FunctionTest.InvsixthrootDouble (0 ms)
11: [ RUN ] FunctionTest.InvsixthrootInteger
11: [ OK ] FunctionTest.InvsixthrootInteger (0 ms)
11: [ RUN ] FunctionTest.Powers
11: [ OK ] FunctionTest.Powers (0 ms)
11: [ RUN ] FunctionTest.ErfInvFloat
11: [ OK ] FunctionTest.ErfInvFloat (0 ms)
11: [ RUN ] FunctionTest.ErfInvDouble
11: [ OK ] FunctionTest.ErfInvDouble (1 ms)
11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat
11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms)
11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble
11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms)
11: [----------] 21 tests from FunctionTest (5 ms total)
11:
11: [----------] 2 tests from InvertMatrixTest
11: [ RUN ] InvertMatrixTest.IdentityIsImpotent
11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms)
11: [ RUN ] InvertMatrixTest.ComputesInverse
11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms)
11: [----------] 2 tests from InvertMatrixTest (0 ms total)
11:
11: [----------] 2 tests from InvertBoxMatrixTest
11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent
11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms)
11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace
11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms)
11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total)
11:
11: [----------] 6 tests from RVecTest
11: [ RUN ] RVecTest.CanBeStoredInVector
11: [ OK ] RVecTest.CanBeStoredInVector (0 ms)
11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec
11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms)
11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec
11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms)
11: [ RUN ] RVecTest.WorksAsMutable_rvec
11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms)
11: [ RUN ] RVecTest.WorksAs_rvec_Array
11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms)
11: [ RUN ] RVecTest.WorksAs_rvec_Reference
11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms)
11: [----------] 6 tests from RVecTest (0 ms total)
11:
11: [----------] Global test environment tear-down
11: [==========] 31 tests from 4 test cases ran. (5 ms total)
11: [ PASSED ] 31 tests.
11/33 Test #11: MathUnitTests .................... Passed 0.02 sec
test 12
Start 12: MdrunUtilityUnitTests
12: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/mdrunutility-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/MdrunUtilityUnitTests.xml"
12: Test timeout computed to be: 30
12: [==========] Running 17 tests from 1 test case.
12: [----------] Global test environment set-up.
12: [----------] 17 tests from ThreadAffinityTest
12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled
12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported
12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (1 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware
12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset
12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride
12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms)
12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto
12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced
12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms)
12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced
12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms)
12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread
12: NOTE: Affinity setting failed.
12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto
12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced
12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads
12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms)
12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing
12: NOTE: Affinity setting for 1/2 threads failed.
12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms)
12: [----------] 17 tests from ThreadAffinityTest (9 ms total)
12:
12: [----------] Global test environment tear-down
12: [==========] 17 tests from 1 test case ran. (9 ms total)
12: [ PASSED ] 17 tests.
12/33 Test #12: MdrunUtilityUnitTests ............ Passed 0.03 sec
test 13
Start 13: MdrunUtilityMpiUnitTests
13: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/mdrunutility-mpi-test "-ntmpi" "4" "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/MdrunUtilityMpiUnitTests.xml"
13: Test timeout computed to be: 30
13: [==========] Running 13 tests from 2 test cases.
13: [----------] Global test environment set-up.
13: [----------] 6 tests from ThreadAffinityMultiRankTest
13: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode
13: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (3 ms)
13: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride
13: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (5 ms)
13: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes
13: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (3 ms)
13: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled
13: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms)
13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto
13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (2 ms)
13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce
13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms)
13: [----------] 6 tests from ThreadAffinityMultiRankTest (14 ms total)
13:
13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (3 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (2 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (3 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (3 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (2 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (4 ms)
13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly
13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (3 ms)
13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (20 ms total)
13:
13: [----------] Global test environment tear-down
13: [==========] 13 tests from 2 test cases ran. (35 ms total)
13: [ PASSED ] 13 tests.
13/33 Test #13: MdrunUtilityMpiUnitTests ......... Passed 0.05 sec
test 14
Start 14: OnlineHelpUnitTests
14: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/onlinehelp-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/OnlineHelpUnitTests.xml"
14: Test timeout computed to be: 30
14: [==========] Running 22 tests from 4 test cases.
14: [----------] Global test environment set-up.
14: [----------] 6 tests from TextTableFormatterTest
14: [ RUN ] TextTableFormatterTest.HandlesBasicCase
14: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles
14: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesIndentation
14: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines
14: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (1 ms)
14: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding
14: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns
14: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms)
14: [----------] 6 tests from TextTableFormatterTest (1 ms total)
14:
14: [----------] 3 tests from HelpManagerTest
14: [ RUN ] HelpManagerTest.HandlesRootTopic
14: [ OK ] HelpManagerTest.HandlesRootTopic (1 ms)
14: [ RUN ] HelpManagerTest.HandlesSubTopics
14: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms)
14: [ RUN ] HelpManagerTest.HandlesInvalidTopics
14: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms)
14: [----------] 3 tests from HelpManagerTest (2 ms total)
14:
14: [----------] 2 tests from HelpTopicFormattingTest
14: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic
14: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms)
14: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics
14: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms)
14: [----------] 2 tests from HelpTopicFormattingTest (1 ms total)
14:
14: [----------] 11 tests from HelpWriterContextTest
14: [ RUN ] HelpWriterContextTest.FormatsParagraphs
14: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs
14: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms)
14: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace
14: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (1 ms)
14: [ RUN ] HelpWriterContextTest.FormatsLiteralText
14: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning
14: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation
14: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (1 ms)
14: [ RUN ] HelpWriterContextTest.FormatsBulletList
14: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList
14: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsSimpleTable
14: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsGridTable
14: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsTitles
14: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms)
14: [----------] 11 tests from HelpWriterContextTest (3 ms total)
14:
14: [----------] Global test environment tear-down
14: [==========] 22 tests from 4 test cases ran. (7 ms total)
14: [ PASSED ] 22 tests.
14/33 Test #14: OnlineHelpUnitTests .............. Passed 0.02 sec
test 15
Start 15: OptionsUnitTests
15: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/options-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/OptionsUnitTests.xml"
15: Test timeout computed to be: 30
15: [==========] Running 110 tests from 18 test cases.
15: [----------] Global test environment set-up.
15: [----------] 5 tests from AbstractOptionStorageTest
15: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish
15: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms)
15: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval
15: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (1 ms)
15: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition
15: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms)
15: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition
15: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms)
15: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues
15: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms)
15: [----------] 5 tests from AbstractOptionStorageTest (2 ms total)
15:
15: [----------] 8 tests from FileNameOptionTest
15: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension
15: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue
15: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption
15: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension
15: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension
15: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension
15: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms)
15: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix
15: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms)
15: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix
15: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (1 ms)
15: [----------] 8 tests from FileNameOptionTest (2 ms total)
15:
15: [----------] 15 tests from FileNameOptionManagerTest
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension
15: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (1 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified
15: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified
15: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified
15: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking
15: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms)
15: [----------] 15 tests from FileNameOptionManagerTest (3 ms total)
15:
15: [----------] 1 test from OptionsTest
15: [ RUN ] OptionsTest.FailsOnNonsafeStorage
15: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms)
15: [----------] 1 test from OptionsTest (0 ms total)
15:
15: [----------] 9 tests from OptionsAssignerTest
15: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter
15: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue
15: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter
15: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter
15: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesMissingValue
15: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesExtraValue
15: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesGroups
15: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesSections
15: [ OK ] OptionsAssignerTest.HandlesSections (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesMultipleSources
15: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms)
15: [----------] 9 tests from OptionsAssignerTest (2 ms total)
15:
15: [----------] 4 tests from OptionsAssignerBooleanTest
15: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue
15: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms)
15: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue
15: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms)
15: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo
15: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms)
15: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue
15: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms)
15: [----------] 4 tests from OptionsAssignerBooleanTest (1 ms total)
15:
15: [----------] 13 tests from OptionsAssignerIntegerTest
15: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue
15: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow
15: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue
15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet
15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet
15: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues
15: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.StoresToVector
15: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms)
15: [----------] 13 tests from OptionsAssignerIntegerTest (2 ms total)
15:
15: [----------] 5 tests from OptionsAssignerDoubleTest
15: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue
15: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat
15: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue
15: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue
15: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue
15: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms)
15: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total)
15:
15: [----------] 9 tests from OptionsAssignerStringTest
15: [ RUN ] OptionsAssignerStringTest.StoresSingleValue
15: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue
15: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray
15: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue
15: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue
15: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue
15: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue
15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable
15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector
15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms)
15: [----------] 9 tests from OptionsAssignerStringTest (1 ms total)
15:
15: [----------] 6 tests from OptionsAssignerEnumTest
15: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue
15: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues
15: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (1 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange
15: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue
15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable
15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector
15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms)
15: [----------] 6 tests from OptionsAssignerEnumTest (1 ms total)
15:
15: [----------] 8 tests from RepeatingOptionSectionTest
15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance
15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption
15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance
15: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue
15: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances
15: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault
15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault
15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections
15: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms)
15: [----------] 8 tests from RepeatingOptionSectionTest (2 ms total)
15:
15: [----------] 1 test from TimeUnitManagerTest
15: [ RUN ] TimeUnitManagerTest.BasicOperations
15: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms)
15: [----------] 1 test from TimeUnitManagerTest (0 ms total)
15:
15: [----------] 4 tests from TimeUnitBehaviorTest
15: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue
15: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms)
15: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues
15: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms)
15: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources
15: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms)
15: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks
15: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms)
15: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total)
15:
15: [----------] 2 tests from TreeValueSupportAssignTest
15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree
15: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms)
15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays
15: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms)
15: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total)
15:
15: [----------] 1 test from TreeValueSupportAssignErrorTest
15: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue
15: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms)
15: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total)
15:
15: [----------] 5 tests from TreeValueSupportCheckTest
15: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty
15: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree
15: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1
15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2
15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue
15: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms)
15: [----------] 5 tests from TreeValueSupportCheckTest (1 ms total)
15:
15: [----------] 6 tests from TreeValueSupportAdjustTest
15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues
15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues
15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues
15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues
15: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues
15: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.OrdersValues
15: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms)
15: [----------] 6 tests from TreeValueSupportAdjustTest (2 ms total)
15:
15: [----------] 8 tests from TreeValueSupportTest
15: [ RUN ] TreeValueSupportTest.SupportsBooleanOption
15: [ OK ] TreeValueSupportTest.SupportsBooleanOption (1 ms)
15: [ RUN ] TreeValueSupportTest.SupportsIntegerOption
15: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsInt64Option
15: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsStringOption
15: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsFloatOption
15: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsDoubleOption
15: [ OK ] TreeValueSupportTest.SupportsDoubleOption (1 ms)
15: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption
15: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsEnumOption
15: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms)
15: [----------] 8 tests from TreeValueSupportTest (3 ms total)
15:
15: [----------] Global test environment tear-down
15: [==========] 110 tests from 18 test cases ran. (27 ms total)
15: [ PASSED ] 110 tests.
15/33 Test #15: OptionsUnitTests ................. Passed 0.05 sec
test 16
Start 16: RandomUnitTests
16: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/random-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/RandomUnitTests.xml"
16: Test timeout computed to be: 30
16: [==========] Running 44 tests from 10 test cases.
16: [----------] Global test environment set-up.
16: [----------] 4 tests from ExponentialDistributionTest
16: [ RUN ] ExponentialDistributionTest.Output
16: [ OK ] ExponentialDistributionTest.Output (0 ms)
16: [ RUN ] ExponentialDistributionTest.Logical
16: [ OK ] ExponentialDistributionTest.Logical (0 ms)
16: [ RUN ] ExponentialDistributionTest.Reset
16: [ OK ] ExponentialDistributionTest.Reset (0 ms)
16: [ RUN ] ExponentialDistributionTest.AltParam
16: [ OK ] ExponentialDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from ExponentialDistributionTest (0 ms total)
16:
16: [----------] 4 tests from GammaDistributionTest
16: [ RUN ] GammaDistributionTest.Output
16: [ OK ] GammaDistributionTest.Output (0 ms)
16: [ RUN ] GammaDistributionTest.Logical
16: [ OK ] GammaDistributionTest.Logical (0 ms)
16: [ RUN ] GammaDistributionTest.Reset
16: [ OK ] GammaDistributionTest.Reset (0 ms)
16: [ RUN ] GammaDistributionTest.AltParam
16: [ OK ] GammaDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from GammaDistributionTest (1 ms total)
16:
16: [----------] 4 tests from NormalDistributionTest
16: [ RUN ] NormalDistributionTest.Output
16: [ OK ] NormalDistributionTest.Output (0 ms)
16: [ RUN ] NormalDistributionTest.Logical
16: [ OK ] NormalDistributionTest.Logical (0 ms)
16: [ RUN ] NormalDistributionTest.Reset
16: [ OK ] NormalDistributionTest.Reset (0 ms)
16: [ RUN ] NormalDistributionTest.AltParam
16: [ OK ] NormalDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from NormalDistributionTest (0 ms total)
16:
16: [----------] 1 test from SeedTest
16: [ RUN ] SeedTest.makeRandomSeed
16: [ OK ] SeedTest.makeRandomSeed (0 ms)
16: [----------] 1 test from SeedTest (0 ms total)
16:
16: [----------] 6 tests from TabulatedNormalDistributionTest
16: [ RUN ] TabulatedNormalDistributionTest.Output14
16: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.Output16
16: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14
16: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.Logical
16: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.Reset
16: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.AltParam
16: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms)
16: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total)
16:
16: [----------] 1 test from TabulatedNormalDistributionTableTest
16: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties
16: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (4 ms)
16: [----------] 1 test from TabulatedNormalDistributionTableTest (4 ms total)
16:
16: [----------] 6 tests from ThreeFry2x64Test
16: [ RUN ] ThreeFry2x64Test.Logical
16: [ OK ] ThreeFry2x64Test.Logical (0 ms)
16: [ RUN ] ThreeFry2x64Test.InternalCounterSequence
16: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms)
16: [ RUN ] ThreeFry2x64Test.Reseed
16: [ OK ] ThreeFry2x64Test.Reseed (0 ms)
16: [ RUN ] ThreeFry2x64Test.Discard
16: [ OK ] ThreeFry2x64Test.Discard (0 ms)
16: [ RUN ] ThreeFry2x64Test.InvalidCounter
16: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms)
16: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter
16: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms)
16: [----------] 6 tests from ThreeFry2x64Test (1 ms total)
16:
16: [----------] 4 tests from UniformIntDistributionTest
16: [ RUN ] UniformIntDistributionTest.Output
16: [ OK ] UniformIntDistributionTest.Output (0 ms)
16: [ RUN ] UniformIntDistributionTest.Logical
16: [ OK ] UniformIntDistributionTest.Logical (0 ms)
16: [ RUN ] UniformIntDistributionTest.Reset
16: [ OK ] UniformIntDistributionTest.Reset (0 ms)
16: [ RUN ] UniformIntDistributionTest.AltParam
16: [ OK ] UniformIntDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from UniformIntDistributionTest (0 ms total)
16:
16: [----------] 5 tests from UniformRealDistributionTest
16: [ RUN ] UniformRealDistributionTest.GenerateCanonical
16: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms)
16: [ RUN ] UniformRealDistributionTest.Output
16: [ OK ] UniformRealDistributionTest.Output (0 ms)
16: [ RUN ] UniformRealDistributionTest.Logical
16: [ OK ] UniformRealDistributionTest.Logical (0 ms)
16: [ RUN ] UniformRealDistributionTest.Reset
16: [ OK ] UniformRealDistributionTest.Reset (0 ms)
16: [ RUN ] UniformRealDistributionTest.AltParam
16: [ OK ] UniformRealDistributionTest.AltParam (0 ms)
16: [----------] 5 tests from UniformRealDistributionTest (0 ms total)
16:
16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (1 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms)
16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total)
16:
16: [----------] Global test environment tear-down
16: [==========] 44 tests from 10 test cases ran. (9 ms total)
16: [ PASSED ] 44 tests.
16/33 Test #16: RandomUnitTests .................. Passed 0.04 sec
test 17
Start 17: TableUnitTests
17: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/table-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/TableUnitTests.xml"
17: Test timeout computed to be: 30
17: [==========] Running 16 tests from 2 test cases.
17: [----------] Global test environment set-up.
17: [----------] 8 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable
17: [ RUN ] SplineTableTest/0.HandlesIncorrectInput
17: [ OK ] SplineTableTest/0.HandlesIncorrectInput (5 ms)
17: [ RUN ] SplineTableTest/0.Sinc
17: [ OK ] SplineTableTest/0.Sinc (3 ms)
17: [ RUN ] SplineTableTest/0.LJ12
17: [ OK ] SplineTableTest/0.LJ12 (51 ms)
17: [ RUN ] SplineTableTest/0.PmeCorrection
17: [ OK ] SplineTableTest/0.PmeCorrection (3 ms)
17: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput
17: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms)
17: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr
17: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms)
17: [ RUN ] SplineTableTest/0.TwoFunctions
17: [ OK ] SplineTableTest/0.TwoFunctions (102 ms)
17: [ RUN ] SplineTableTest/0.ThreeFunctions
17: [ OK ] SplineTableTest/0.ThreeFunctions (109 ms)
17: [----------] 8 tests from SplineTableTest/0 (278 ms total)
17:
17: [----------] 8 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable
17: [ RUN ] SplineTableTest/1.HandlesIncorrectInput
17: [ OK ] SplineTableTest/1.HandlesIncorrectInput (5 ms)
17: [ RUN ] SplineTableTest/1.Sinc
17: [ OK ] SplineTableTest/1.Sinc (5 ms)
17: [ RUN ] SplineTableTest/1.LJ12
17: [ OK ] SplineTableTest/1.LJ12 (126 ms)
17: [ RUN ] SplineTableTest/1.PmeCorrection
17: [ OK ] SplineTableTest/1.PmeCorrection (4 ms)
17: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput
17: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms)
17: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr
17: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms)
17: [ RUN ] SplineTableTest/1.TwoFunctions
17: [ OK ] SplineTableTest/1.TwoFunctions (253 ms)
17: [ RUN ] SplineTableTest/1.ThreeFunctions
17: [ OK ] SplineTableTest/1.ThreeFunctions (267 ms)
17: [----------] 8 tests from SplineTableTest/1 (664 ms total)
17:
17: [----------] Global test environment tear-down
17: [==========] 16 tests from 2 test cases ran. (942 ms total)
17: [ PASSED ] 16 tests.
17/33 Test #17: TableUnitTests ................... Passed 0.96 sec
test 18
Start 18: TaskAssignmentUnitTests
18: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/taskassignment-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/TaskAssignmentUnitTests.xml"
18: Test timeout computed to be: 30
18: [==========] Running 3 tests from 1 test case.
18: [----------] Global test environment set-up.
18: [----------] 3 tests from GpuIdStringHandlingTest
18: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork
18: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (1 ms)
18: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid
18: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms)
18: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow
18: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms)
18: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total)
18:
18: [----------] Global test environment tear-down
18: [==========] 3 tests from 1 test case ran. (1 ms total)
18: [ PASSED ] 3 tests.
18/33 Test #18: TaskAssignmentUnitTests .......... Passed 0.02 sec
test 19
Start 19: UtilityUnitTests
19: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/utility-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/UtilityUnitTests.xml"
19: Test timeout computed to be: 30
19: [==========] Running 307 tests from 49 test cases.
19: [----------] Global test environment set-up.
19: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator<double, gmx::AlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/0 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator<double, gmx::PageAlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/1 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator<int, gmx::AlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/2 (1 ms total)
19:
19: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator<int, gmx::PageAlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/3 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator<gmx::BasicVector<double>, gmx::AlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/4 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator<gmx::BasicVector<double>, gmx::PageAlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms)
19: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/5 (1 ms total)
19:
19: [----------] 1 test from EmptyArrayRefTest
19: [ RUN ] EmptyArrayRefTest.IsEmpty
19: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms)
19: [----------] 1 test from EmptyArrayRefTest (0 ms total)
19:
19: [----------] 1 test from EmptyConstArrayRefTest
19: [ RUN ] EmptyConstArrayRefTest.IsEmpty
19: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms)
19: [----------] 1 test from EmptyConstArrayRefTest (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef<char>
19: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/0 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef<unsigned char>
19: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/1 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef<int>
19: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/2 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef<unsigned int>
19: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/3 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef<long>
19: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/4 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef<unsigned long>
19: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/5 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef<long long>
19: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/6 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef<unsigned long long>
19: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (1 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/7 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef<float>
19: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/8 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef<double>
19: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/9 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef<char const>
19: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/10 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef<unsigned char const>
19: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/11 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef<int const>
19: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/12 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef<unsigned int const>
19: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/13 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef<long const>
19: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/14 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef<unsigned long const>
19: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/15 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef<long long const>
19: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/16 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef<unsigned long long const>
19: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/17 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef<float const>
19: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/18 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef<double const>
19: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/19 (0 ms total)
19:
19: [----------] 4 tests from KeyValueTreeSerializerTest
19: [ RUN ] KeyValueTreeSerializerTest.EmptyTree
19: [ OK ] KeyValueTreeSerializerTest.EmptyTree (1 ms)
19: [ RUN ] KeyValueTreeSerializerTest.SimpleObject
19: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms)
19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays
19: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms)
19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects
19: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms)
19: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total)
19:
19: [----------] 6 tests from TreeValueTransformTest
19: [ RUN ] TreeValueTransformTest.SimpleTransforms
19: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms)
19: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive
19: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms)
19: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject
19: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms)
19: [ RUN ] TreeValueTransformTest.ObjectFromString
19: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms)
19: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings
19: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms)
19: [ RUN ] TreeValueTransformTest.ScopedTransformRules
19: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms)
19: [----------] 6 tests from TreeValueTransformTest (1 ms total)
19:
19: [----------] 1 test from TreeValueTransformErrorTest
19: [ RUN ] TreeValueTransformErrorTest.ConversionError
19: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms)
19: [----------] 1 test from TreeValueTransformErrorTest (0 ms total)
19:
19: [----------] 5 tests from LoggerTest
19: [ RUN ] LoggerTest.EmptyLoggerWorks
19: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms)
19: [ RUN ] LoggerTest.LogsToStream
19: [ OK ] LoggerTest.LogsToStream (1 ms)
19: [ RUN ] LoggerTest.LogsToFile
19: [ OK ] LoggerTest.LogsToFile (0 ms)
19: [ RUN ] LoggerTest.LevelFilteringWorks
19: [ OK ] LoggerTest.LevelFilteringWorks (0 ms)
19: [ RUN ] LoggerTest.LogsToMultipleStreams
19: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms)
19: [----------] 5 tests from LoggerTest (1 ms total)
19:
19: [----------] 4 tests from MutexBasicTest
19: [ RUN ] MutexBasicTest.CanBeMade
19: [ OK ] MutexBasicTest.CanBeMade (0 ms)
19: [ RUN ] MutexBasicTest.CanBeLocked
19: [ OK ] MutexBasicTest.CanBeLocked (0 ms)
19: [ RUN ] MutexBasicTest.CanBeTryLocked
19: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms)
19: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard
19: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms)
19: [----------] 4 tests from MutexBasicTest (0 ms total)
19:
19: [----------] 3 tests from MutexTaskTest
19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock
19: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms)
19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread
19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms)
19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread
19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms)
19: [----------] 3 tests from MutexTaskTest (0 ms total)
19:
19: [----------] 2 tests from PathTest
19: [ RUN ] PathTest.StripSourcePrefixWorks
19: [ OK ] PathTest.StripSourcePrefixWorks (0 ms)
19: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks
19: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (0 ms)
19: [----------] 2 tests from PathTest (0 ms total)
19:
19: [----------] 7 tests from StringUtilityTest
19: [ RUN ] StringUtilityTest.StartsWith
19: [ OK ] StringUtilityTest.StartsWith (0 ms)
19: [ RUN ] StringUtilityTest.EndsWith
19: [ OK ] StringUtilityTest.EndsWith (0 ms)
19: [ RUN ] StringUtilityTest.StripSuffixIfPresent
19: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms)
19: [ RUN ] StringUtilityTest.StripString
19: [ OK ] StringUtilityTest.StripString (0 ms)
19: [ RUN ] StringUtilityTest.SplitString
19: [ OK ] StringUtilityTest.SplitString (1 ms)
19: [ RUN ] StringUtilityTest.SplitDelimitedString
19: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms)
19: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString
19: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms)
19: [----------] 7 tests from StringUtilityTest (2 ms total)
19:
19: [----------] 2 tests from FormatStringTest
19: [ RUN ] FormatStringTest.HandlesBasicFormatting
19: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms)
19: [ RUN ] FormatStringTest.HandlesLongStrings
19: [ OK ] FormatStringTest.HandlesLongStrings (0 ms)
19: [----------] 2 tests from FormatStringTest (1 ms total)
19:
19: [----------] 1 test from StringFormatterTest
19: [ RUN ] StringFormatterTest.HandlesBasicFormatting
19: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms)
19: [----------] 1 test from StringFormatterTest (0 ms total)
19:
19: [----------] 1 test from formatAndJoinTest
19: [ RUN ] formatAndJoinTest.Works
19: [ OK ] formatAndJoinTest.Works (0 ms)
19: [----------] 1 test from formatAndJoinTest (0 ms total)
19:
19: [----------] 1 test from JoinStringsTest
19: [ RUN ] JoinStringsTest.Works
19: [ OK ] JoinStringsTest.Works (0 ms)
19: [----------] 1 test from JoinStringsTest (0 ms total)
19:
19: [----------] 6 tests from ReplaceAllTest
19: [ RUN ] ReplaceAllTest.HandlesEmptyStrings
19: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesNoMatches
19: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds
19: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesMultipleMatches
19: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesWordBoundaries
19: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches
19: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms)
19: [----------] 6 tests from ReplaceAllTest (0 ms total)
19:
19: [----------] 10 tests from TextLineWrapperTest
19: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings
19: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace
19: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines
19: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms)
19: [ RUN ] TextLineWrapperTest.WrapsCorrectly
19: [ OK ] TextLineWrapperTest.WrapsCorrectly (1 ms)
19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks
19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesIndent
19: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines
19: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesHangingIndent
19: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter
19: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms)
19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace
19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms)
19: [----------] 10 tests from TextLineWrapperTest (1 ms total)
19:
19: [----------] 6 tests from TextWriterTest
19: [ RUN ] TextWriterTest.WritesLines
19: [ OK ] TextWriterTest.WritesLines (1 ms)
19: [ RUN ] TextWriterTest.WritesLinesInParts
19: [ OK ] TextWriterTest.WritesLinesInParts (0 ms)
19: [ RUN ] TextWriterTest.WritesWrappedLines
19: [ OK ] TextWriterTest.WritesWrappedLines (0 ms)
19: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper
19: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms)
19: [ RUN ] TextWriterTest.TracksNewlines
19: [ OK ] TextWriterTest.TracksNewlines (0 ms)
19: [ RUN ] TextWriterTest.PreservesTrailingWhitespace
19: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms)
19: [----------] 6 tests from TextWriterTest (1 ms total)
19:
19: [----------] 1 test from TypeTraitsTest
19: [ RUN ] TypeTraitsTest.IsIntegralConstant
19: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms)
19: [----------] 1 test from TypeTraitsTest (0 ms total)
19:
19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms)
19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (1 ms total)
19:
19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms)
19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total)
19:
19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms)
19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total)
19:
19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms)
19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total)
19:
19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (1 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (1 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (1 ms)
19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (3 ms total)
19:
19: [----------] Global test environment tear-down
19: [==========] 307 tests from 49 test cases ran. (24 ms total)
19: [ PASSED ] 307 tests.
19/33 Test #19: UtilityUnitTests ................. Passed 0.08 sec
test 20
Start 20: FileIOTests
20: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/fileio-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/FileIOTests.xml"
20: Test timeout computed to be: 30
20: [==========] Running 15 tests from 3 test cases.
20: [----------] Global test environment set-up.
20: [----------] 9 tests from ReadTest
20: [ RUN ] ReadTest.get_eint_ReadsInteger
20: [ OK ] ReadTest.get_eint_ReadsInteger (0 ms)
20: [ RUN ] ReadTest.get_eint_WarnsAboutFloat
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side '0.8' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms)
20: [ RUN ] ReadTest.get_eint_WarnsAboutString
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side 'hello' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms)
20: [ RUN ] ReadTest.get_eint64_ReadsInteger
20: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms)
20: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side '0.8' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms)
20: [ RUN ] ReadTest.get_eint64_WarnsAboutString
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side 'hello' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms)
20: [ RUN ] ReadTest.get_ereal_ReadsInteger
20: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms)
20: [ RUN ] ReadTest.get_ereal_ReadsFloat
20: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms)
20: [ RUN ] ReadTest.get_ereal_WarnsAboutString
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side 'hello' for parameter 'test' in parameter file is not a
20: real value
20:
20:
20: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms)
20: [----------] 9 tests from ReadTest (0 ms total)
20:
20: [----------] 2 tests from TngTest
20: [ RUN ] TngTest.CanOpenTngFile
20: [ OK ] TngTest.CanOpenTngFile (0 ms)
20: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal
20: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms)
20: [----------] 2 tests from TngTest (0 ms total)
20:
20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms)
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms)
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (5 ms)
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms)
20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (7 ms total)
20:
20: [----------] Global test environment tear-down
20: [==========] 15 tests from 3 test cases ran. (8 ms total)
20: [ PASSED ] 15 tests.
20/33 Test #20: FileIOTests ...................... Passed 0.02 sec
test 21
Start 21: PullTest
21: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/pull-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/PullTest.xml"
21: Test timeout computed to be: 30
21: [==========] Running 5 tests from 1 test case.
21: [----------] Global test environment set-up.
21: [----------] 5 tests from PullTest
21: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox
21: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox
21: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXyzTricBox
21: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXyzLongBox
21: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXySkewedBox
21: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms)
21: [----------] 5 tests from PullTest (0 ms total)
21:
21: [----------] Global test environment tear-down
21: [==========] 5 tests from 1 test case ran. (0 ms total)
21: [ PASSED ] 5 tests.
21/33 Test #21: PullTest ......................... Passed 0.02 sec
test 22
Start 22: AwhTest
22: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/awh-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/AwhTest.xml"
22: Test timeout computed to be: 30
22: [==========] Running 12 tests from 4 test cases.
22: [----------] Global test environment set-up.
22: [----------] 1 test from BiasTest
22: [ RUN ] BiasTest.DetectsCovering
22: [ OK ] BiasTest.DetectsCovering (1 ms)
22: [----------] 1 test from BiasTest (2 ms total)
22:
22: [----------] 1 test from gridTest
22: [ RUN ] gridTest.neighborhood
22: [ OK ] gridTest.neighborhood (2 ms)
22: [----------] 1 test from gridTest (2 ms total)
22:
22: [----------] 8 tests from WithParameters/BiasTest
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms)
22: [----------] 8 tests from WithParameters/BiasTest (6 ms total)
22:
22: [----------] 2 tests from WithParameters/BiasStateTest
22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0
22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms)
22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1
22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms)
22: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total)
22:
22: [----------] Global test environment tear-down
22: [==========] 12 tests from 4 test cases ran. (11 ms total)
22: [ PASSED ] 12 tests.
22/33 Test #22: AwhTest .......................... Passed 0.03 sec
test 23
Start 23: SimdUnitTests
23: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/simd-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/SimdUnitTests.xml"
23: Test timeout computed to be: 30
23: [==========] Running 86 tests from 3 test cases.
23: [----------] Global test environment set-up.
23: [----------] 41 tests from SimdScalarTest
23: [ RUN ] SimdScalarTest.load
23: [ OK ] SimdScalarTest.load (0 ms)
23: [ RUN ] SimdScalarTest.loadU
23: [ OK ] SimdScalarTest.loadU (0 ms)
23: [ RUN ] SimdScalarTest.store
23: [ OK ] SimdScalarTest.store (0 ms)
23: [ RUN ] SimdScalarTest.storeU
23: [ OK ] SimdScalarTest.storeU (0 ms)
23: [ RUN ] SimdScalarTest.setZero
23: [ OK ] SimdScalarTest.setZero (0 ms)
23: [ RUN ] SimdScalarTest.andNot
23: [ OK ] SimdScalarTest.andNot (0 ms)
23: [ RUN ] SimdScalarTest.fma
23: [ OK ] SimdScalarTest.fma (0 ms)
23: [ RUN ] SimdScalarTest.fms
23: [ OK ] SimdScalarTest.fms (0 ms)
23: [ RUN ] SimdScalarTest.fnma
23: [ OK ] SimdScalarTest.fnma (0 ms)
23: [ RUN ] SimdScalarTest.fnms
23: [ OK ] SimdScalarTest.fnms (0 ms)
23: [ RUN ] SimdScalarTest.maskAdd
23: [ OK ] SimdScalarTest.maskAdd (0 ms)
23: [ RUN ] SimdScalarTest.maskzMul
23: [ OK ] SimdScalarTest.maskzMul (0 ms)
23: [ RUN ] SimdScalarTest.maskzFma
23: [ OK ] SimdScalarTest.maskzFma (0 ms)
23: [ RUN ] SimdScalarTest.abs
23: [ OK ] SimdScalarTest.abs (0 ms)
23: [ RUN ] SimdScalarTest.max
23: [ OK ] SimdScalarTest.max (0 ms)
23: [ RUN ] SimdScalarTest.min
23: [ OK ] SimdScalarTest.min (0 ms)
23: [ RUN ] SimdScalarTest.round
23: [ OK ] SimdScalarTest.round (0 ms)
23: [ RUN ] SimdScalarTest.trunc
23: [ OK ] SimdScalarTest.trunc (0 ms)
23: [ RUN ] SimdScalarTest.reduce
23: [ OK ] SimdScalarTest.reduce (0 ms)
23: [ RUN ] SimdScalarTest.testBits
23: [ OK ] SimdScalarTest.testBits (0 ms)
23: [ RUN ] SimdScalarTest.anyTrue
23: [ OK ] SimdScalarTest.anyTrue (0 ms)
23: [ RUN ] SimdScalarTest.selectByMask
23: [ OK ] SimdScalarTest.selectByMask (0 ms)
23: [ RUN ] SimdScalarTest.selectByNotMask
23: [ OK ] SimdScalarTest.selectByNotMask (0 ms)
23: [ RUN ] SimdScalarTest.blend
23: [ OK ] SimdScalarTest.blend (0 ms)
23: [ RUN ] SimdScalarTest.cvtR2I
23: [ OK ] SimdScalarTest.cvtR2I (0 ms)
23: [ RUN ] SimdScalarTest.cvttR2I
23: [ OK ] SimdScalarTest.cvttR2I (0 ms)
23: [ RUN ] SimdScalarTest.cvtI2R
23: [ OK ] SimdScalarTest.cvtI2R (0 ms)
23: [ RUN ] SimdScalarTest.cvtF2D
23: [ OK ] SimdScalarTest.cvtF2D (0 ms)
23: [ RUN ] SimdScalarTest.cvtD2D
23: [ OK ] SimdScalarTest.cvtD2D (0 ms)
23: [ RUN ] SimdScalarTest.loadI
23: [ OK ] SimdScalarTest.loadI (0 ms)
23: [ RUN ] SimdScalarTest.loadUI
23: [ OK ] SimdScalarTest.loadUI (0 ms)
23: [ RUN ] SimdScalarTest.storeI
23: [ OK ] SimdScalarTest.storeI (0 ms)
23: [ RUN ] SimdScalarTest.storeUI
23: [ OK ] SimdScalarTest.storeUI (0 ms)
23: [ RUN ] SimdScalarTest.andNotI
23: [ OK ] SimdScalarTest.andNotI (0 ms)
23: [ RUN ] SimdScalarTest.testBitsI
23: [ OK ] SimdScalarTest.testBitsI (0 ms)
23: [ RUN ] SimdScalarTest.selectByMaskI
23: [ OK ] SimdScalarTest.selectByMaskI (0 ms)
23: [ RUN ] SimdScalarTest.selectByNotMaskI
23: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms)
23: [ RUN ] SimdScalarTest.blendI
23: [ OK ] SimdScalarTest.blendI (0 ms)
23: [ RUN ] SimdScalarTest.cvtB2IB
23: [ OK ] SimdScalarTest.cvtB2IB (0 ms)
23: [ RUN ] SimdScalarTest.cvtIB2B
23: [ OK ] SimdScalarTest.cvtIB2B (0 ms)
23: [ RUN ] SimdScalarTest.expandScalarsToTriplets
23: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms)
23: [----------] 41 tests from SimdScalarTest (2 ms total)
23:
23: [----------] 8 tests from SimdScalarUtilTest
23: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU
23: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms)
23: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU
23: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms)
23: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU
23: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms)
23: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum
23: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms)
23: [----------] 8 tests from SimdScalarUtilTest (0 ms total)
23:
23: [----------] 37 tests from SimdScalarMathTest
23: [ RUN ] SimdScalarMathTest.copysign
23: [ OK ] SimdScalarMathTest.copysign (0 ms)
23: [ RUN ] SimdScalarMathTest.invsqrtPair
23: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms)
23: [ RUN ] SimdScalarMathTest.inv
23: [ OK ] SimdScalarMathTest.inv (0 ms)
23: [ RUN ] SimdScalarMathTest.maskzInvsqrt
23: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms)
23: [ RUN ] SimdScalarMathTest.log
23: [ OK ] SimdScalarMathTest.log (0 ms)
23: [ RUN ] SimdScalarMathTest.exp2
23: [ OK ] SimdScalarMathTest.exp2 (0 ms)
23: [ RUN ] SimdScalarMathTest.exp
23: [ OK ] SimdScalarMathTest.exp (0 ms)
23: [ RUN ] SimdScalarMathTest.erf
23: [ OK ] SimdScalarMathTest.erf (0 ms)
23: [ RUN ] SimdScalarMathTest.erfc
23: [ OK ] SimdScalarMathTest.erfc (0 ms)
23: [ RUN ] SimdScalarMathTest.sincos
23: [ OK ] SimdScalarMathTest.sincos (0 ms)
23: [ RUN ] SimdScalarMathTest.sin
23: [ OK ] SimdScalarMathTest.sin (0 ms)
23: [ RUN ] SimdScalarMathTest.cos
23: [ OK ] SimdScalarMathTest.cos (0 ms)
23: [ RUN ] SimdScalarMathTest.tan
23: [ OK ] SimdScalarMathTest.tan (0 ms)
23: [ RUN ] SimdScalarMathTest.asin
23: [ OK ] SimdScalarMathTest.asin (0 ms)
23: [ RUN ] SimdScalarMathTest.acos
23: [ OK ] SimdScalarMathTest.acos (0 ms)
23: [ RUN ] SimdScalarMathTest.atan
23: [ OK ] SimdScalarMathTest.atan (0 ms)
23: [ RUN ] SimdScalarMathTest.atan2
23: [ OK ] SimdScalarMathTest.atan2 (0 ms)
23: [ RUN ] SimdScalarMathTest.pmeForceCorrection
23: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms)
23: [ RUN ] SimdScalarMathTest.pmePotentialCorrection
23: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms)
23: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy
23: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.invSingleAccuracy
23: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy
23: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.logSingleAccuracy
23: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy
23: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.expSingleAccuracy
23: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.erfSingleAccuracy
23: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy
23: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy
23: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.sinSingleAccuracy
23: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.cosSingleAccuracy
23: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.tanSingleAccuracy
23: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.asinSingleAccuracy
23: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.acosSingleAccuracy
23: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.atanSingleAccuracy
23: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy
23: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy
23: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy
23: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms)
23: [----------] 37 tests from SimdScalarMathTest (2 ms total)
23:
23: [----------] Global test environment tear-down
23: [==========] 86 tests from 3 test cases ran. (4 ms total)
23: [ PASSED ] 86 tests.
23/33 Test #23: SimdUnitTests .................... Passed 0.03 sec
test 24
Start 24: GmxAnaTest
24: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/gmxana-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/GmxAnaTest.xml"
24: Test timeout computed to be: 600
24: [==========] Running 12 tests from 2 test cases.
24: [----------] Global test environment set-up.
24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group: trr version: GMX_trn_file (single precision)
24:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (4 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (4 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (3 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group: Reading frames from gro file '', 6 atoms.
24:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (3 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group: Reading frames from pdb file
Reading frame 0 time 0.000 't= 0.00000', 6 atoms
24:
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (3 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5
24: Group 0 ( System) has 6 elements
24: Group 1 ( Water) has 6 elements
24: Group 2 ( SOL) has 6 elements
24: Select a group:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
24: Selected 0: 'System'
24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (4 ms)
24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (21 ms total)
24:
24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group:
Reading frame 0 time 0.000 -> frame 0 time 0.000
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (6 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group:
Reading frame 0 time 0.000
24: Precision of /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests/spc2-traj.tng is 0.001 (nm)
24: -> frame 0 time 0.000
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (6 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group:
Reading frame 0 time 0.000 -> frame 0 time 0.000
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (5 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group: Reading frames from gro file '', 6 atoms.
24:
Reading frame 0 time 0.000
24: Precision of /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests/spc2-traj.gro is 0.001 (nm)
24: -> frame 0 time 0.000
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (5 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group: Reading frames from pdb file
Reading frame 0 time 0.000
24: Precision of /<<PKGBUILDDIR>>/src/gromacs/gmxana/tests/spc2-traj.pdb is 0.0001 (nm)
24: -> frame 0 time 0.000
't= 0.00000', 6 atoms
24:
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (5 ms)
24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5
24: Will write tng: Trajectory file (tng format)
24: Group 0 ( System) has 6 elements
24: Group 1 (FirstWaterMolecule) has 3 elements
24: Group 2 (SecondWaterMolecule) has 3 elements
24: Select a group:
Reading frame 0 time 0.000 -> frame 0 time 0.000
Reading frame 1 time 0.000 -> frame 1 time 0.000
Last frame 1 time 0.000
24:
24: Select group for output
24: Selected 2: 'SecondWaterMolecule'
24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (5 ms)
24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (33 ms total)
24:
24: [----------] Global test environment tear-down
24: [==========] 12 tests from 2 test cases ran. (54 ms total)
24: [ PASSED ] 12 tests.
24/33 Test #24: GmxAnaTest ....................... Passed 0.07 sec
test 25
Start 25: GmxPreprocessTests
25: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/gmxpreprocess-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/GmxPreprocessTests.xml"
25: Test timeout computed to be: 30
25: [==========] Running 20 tests from 4 test cases.
25: [----------] Global test environment set-up.
25: [----------] 4 tests from GenconfTest
25: [ RUN ] GenconfTest.nbox_Works
25: [ OK ] GenconfTest.nbox_Works (1 ms)
25: [ RUN ] GenconfTest.nbox_norenumber_Works
25: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms)
25: [ RUN ] GenconfTest.nbox_dist_Works
25: [ OK ] GenconfTest.nbox_dist_Works (1 ms)
25: [ RUN ] GenconfTest.nbox_rot_Works
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: center of geometry: 1.733667, 1.477000, 0.905167
25: [ OK ] GenconfTest.nbox_rot_Works (2 ms)
25: [----------] 4 tests from GenconfTest (5 ms total)
25:
25: [----------] 5 tests from InsertMoleculesTest
25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration
25: Reading solute configuration
25: Test system for solvate/insert-molecules
25: Containing 6 atoms in 2 residues
25: Reading molecule configuration
25: test two-residue molecule for insertion
25: Containing 2 atoms in 2 residues
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Using random seed 1997
25:
Try 1 success (now 8 atoms)!
25:
25: Added 1 molecules (out of 1 requested)
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro
25:
25: Output configuration contains 8 atoms in 4 residues
25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (4 ms)
25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox
25: Reading molecule configuration
25: test two-residue molecule for insertion
25: Containing 2 atoms in 2 residues
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Using random seed 1997
25:
Try 1 success (now 2 atoms)!
25:
Try 2 success (now 4 atoms)!
25:
Try 3 success (now 6 atoms)!
25:
Try 4 success (now 8 atoms)!
25:
Try 5 success (now 10 atoms)!
25:
25: Added 5 molecules (out of 5 requested)
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEmptyBox_out.gro
25:
25: Output configuration contains 10 atoms in 10 residues
25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (3 ms)
25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox
25: Reading solute configuration
25: Test system for solvate/insert-molecules
25: Containing 6 atoms in 2 residues
25: Reading molecule configuration
25: test molecule for insertion
25: Containing 2 atoms in 1 residues
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Using random seed 1997
25:
Try 1 success (now 8 atoms)!
25:
Try 2 success (now 10 atoms)!
25:
25: Added 2 molecules (out of 2 requested)
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro
25:
25: Output configuration contains 10 atoms in 4 residues
25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (4 ms)
25: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement
25: Reading solute configuration
25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984
25: Containing 648 atoms in 216 residues
25: Reading molecule configuration
25: test molecule for insertion
25: Containing 2 atoms in 1 residues
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Using random seed 1997
25:
Try 1 success (now 650 atoms)!
25:
Try 2 success (now 652 atoms)!
25:
Try 3 success (now 654 atoms)!
25:
Try 4 success (now 656 atoms)!
25:
25: Added 4 molecules (out of 4 requested)
25: Replaced 8 residues (24 atoms)
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro
25:
25: Output configuration contains 632 atoms in 212 residues
25: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (16 ms)
25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions
25: Reading molecule configuration
25: test molecule for insertion at origin
25: Containing 2 atoms in 1 residues
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Using random seed 1997
25: Read 4 positions from file /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_5.dat
25:
25:
Try 1 success (now 2 atoms)!
25:
Try 2 success (now 4 atoms)!
25:
Try 3
Try 4
Try 5
Try 6
Try 7
Try 8
Try 9
Try 10
Try 11
Try 12 skipped position (0.990, 2.010, 3.000)
25:
Try 13 success (now 6 atoms)!
25:
25: Added 3 molecules (out of 4 requested)
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro
25:
25: Output configuration contains 6 atoms in 3 residues
25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (4 ms)
25: [----------] 5 tests from InsertMoleculesTest (31 ms total)
25:
25: [----------] 7 tests from GetIrTest
25: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp, line 12]:
25: /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: Ignoring obsolete mdp entry 'title'
25: Replacing old mdp entry 'xtc_grps' by 'compressed-x-grps'
25: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (6 ms)
25: [ RUN ] GetIrTest.HandlesOnlyCutoffScheme
25: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (6 ms)
25: [ RUN ] GetIrTest.UserErrorsSilentlyTolerated
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp, line 5]:
25: /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (5 ms)
25: [ RUN ] GetIrTest.EmptyInputWorks
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp, line 1]:
25: /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: [ OK ] GetIrTest.EmptyInputWorks (6 ms)
25: [ RUN ] GetIrTest.ProducesOutputFromElectricField
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp, line 2]:
25: /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: [ OK ] GetIrTest.ProducesOutputFromElectricField (6 ms)
25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldPulsed
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp, line 2]:
25: /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (6 ms)
25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldOscillating
25:
25: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp, line 2]:
25: /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
25: scheme was introduced, but the group scheme was still the default. The
25: default is now the Verlet scheme, so you will observe different behaviour.
25:
25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (5 ms)
25: [----------] 7 tests from GetIrTest (40 ms total)
25:
25: [----------] 4 tests from SolvateTest
25: [ RUN ] SolvateTest.cs_box_Works
25: Reading solvent configuration
25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984
25: Containing 648 atoms in 216 residues
25:
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Generating solvent configuration
25: Will generate new solvent configuration of 1x1x1 boxes
25: Solvent box contains 270 atoms in 90 residues
25: Removed 129 solvent atoms due to solvent-solvent overlap
25: Sorting configuration
25: Found 1 molecule type:
25: SOL ( 3 atoms): 47 residues
25: Generated solvent containing 141 atoms in 47 residues
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_box_Works_out.gro
25:
25: Output configuration contains 141 atoms in 47 residues
25: Volume : 1.331 (nm^3)
25: Density : 1056.36 (g/l)
25: Number of SOL molecules: 47
25:
25: [ OK ] SolvateTest.cs_box_Works (16 ms)
25: [ RUN ] SolvateTest.cs_cp_Works
25: Reading solute configuration
25: Test system for solvate/insert-molecules
25: Containing 6 atoms in 2 residues
25: Reading solvent configuration
25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984
25: Containing 648 atoms in 216 residues
25:
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Generating solvent configuration
25: Will generate new solvent configuration of 2x2x2 boxes
25: Solvent box contains 3660 atoms in 1220 residues
25: Removed 987 solvent atoms due to solvent-solvent overlap
25: Removed 15 solvent atoms due to solute-solvent overlap
25: Sorting configuration
25: Found 1 molecule type:
25: SOL ( 3 atoms): 886 residues
25: Generated solvent containing 2658 atoms in 886 residues
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_Works_out.gro
25:
25: Output configuration contains 2664 atoms in 888 residues
25: Volume : 27.2709 (nm^3)
25: Density : 974.776 (g/l)
25: Number of SOL molecules: 887
25:
25: [ OK ] SolvateTest.cs_cp_Works (64 ms)
25: [ RUN ] SolvateTest.cs_cp_p_Works
25: Reading solute configuration
25: Test system for solvate/insert-molecules
25: Containing 6 atoms in 2 residues
25: Reading solvent configuration
25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984
25: Containing 648 atoms in 216 residues
25:
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Generating solvent configuration
25: Will generate new solvent configuration of 2x2x2 boxes
25: Solvent box contains 3660 atoms in 1220 residues
25: Removed 987 solvent atoms due to solvent-solvent overlap
25: Removed 15 solvent atoms due to solute-solvent overlap
25: Sorting configuration
25: Found 1 molecule type:
25: SOL ( 3 atoms): 886 residues
25: Generated solvent containing 2658 atoms in 886 residues
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_out.gro
25:
25: Output configuration contains 2664 atoms in 888 residues
25: Volume : 27.2709 (nm^3)
25: Density : 974.776 (g/l)
25: Number of SOL molecules: 887
25:
25: Processing topology
25: Adding line for 886 solvent molecules to topology file (/<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works.top)
25: [ OK ] SolvateTest.cs_cp_p_Works (67 ms)
25: [ RUN ] SolvateTest.shell_Works
25: Reading solute configuration
25: Test system for solvate/insert-molecules
25: Containing 6 atoms in 2 residues
25: Reading solvent configuration
25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984
25: Containing 648 atoms in 216 residues
25:
25: Initialising inter-atomic distances...
25:
25: WARNING: Masses and atomic (Van der Waals) radii will be guessed
25: based on residue and atom names, since they could not be
25: definitively assigned from the information in your input
25: files. These guessed numbers might deviate from the mass
25: and radius of the atom type. Please check the output
25: files if necessary.
25:
25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii
25: from the source below. This means the results may be different
25: compared to previous GROMACS versions.
25:
25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
25: A. Bondi
25: van der Waals Volumes and Radii
25: J. Phys. Chem. 68 (1964) pp. 441-451
25: -------- -------- --- Thank You --- -------- --------
25:
25: Generating solvent configuration
25: Will generate new solvent configuration of 2x2x2 boxes
25: Solvent box contains 3660 atoms in 1220 residues
25: Removed 987 solvent atoms due to solvent-solvent overlap
25: Removed 1902 solvent atoms more than 1.000000 nm from solute.
25: Removed 15 solvent atoms due to solute-solvent overlap
25: Sorting configuration
25: Found 1 molecule type:
25: SOL ( 3 atoms): 252 residues
25: Generated solvent containing 756 atoms in 252 residues
25: Writing generated configuration to /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_shell_Works_out.gro
25:
25: Output configuration contains 762 atoms in 254 residues
25: Volume : 27.2709 (nm^3)
25: Density : 279.3 (g/l)
25: Number of SOL molecules: 253
25:
25: [ OK ] SolvateTest.shell_Works (36 ms)
25: [----------] 4 tests from SolvateTest (183 ms total)
25:
25: [----------] Global test environment tear-down
25: [==========] 20 tests from 4 test cases ran. (259 ms total)
25: [ PASSED ] 20 tests.
25/33 Test #25: GmxPreprocessTests ............... Passed 0.28 sec
test 26
Start 26: CorrelationsTest
26: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/correlations-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/CorrelationsTest.xml"
26: Test timeout computed to be: 30
26: [==========] Running 21 tests from 3 test cases.
26: [----------] Global test environment set-up.
26: [----------] 10 tests from AutocorrTest
26: [ RUN ] AutocorrTest.EacNormal
26: [ OK ] AutocorrTest.EacNormal (12 ms)
26: [ RUN ] AutocorrTest.EacNoNormalize
26: [ OK ] AutocorrTest.EacNoNormalize (9 ms)
26: [ RUN ] AutocorrTest.EacCos
26: [ OK ] AutocorrTest.EacCos (13 ms)
26: [ RUN ] AutocorrTest.EacVector
26: [ OK ] AutocorrTest.EacVector (19 ms)
26: [ RUN ] AutocorrTest.EacRcross
26: [ OK ] AutocorrTest.EacRcross (3 ms)
26: [ RUN ] AutocorrTest.EacP0
26: [ OK ] AutocorrTest.EacP0 (20 ms)
26: [ RUN ] AutocorrTest.EacP1
26: [ OK ] AutocorrTest.EacP1 (19 ms)
26: [ RUN ] AutocorrTest.EacP2
26: [ OK ] AutocorrTest.EacP2 (35 ms)
26: [ RUN ] AutocorrTest.EacP3
26: [ OK ] AutocorrTest.EacP3 (8 ms)
26: [ RUN ] AutocorrTest.EacP4
26: [ OK ] AutocorrTest.EacP4 (19 ms)
26: [----------] 10 tests from AutocorrTest (162 ms total)
26:
26: [----------] 1 test from ManyAutocorrelationTest
26: [ RUN ] ManyAutocorrelationTest.Empty
26: [ OK ] ManyAutocorrelationTest.Empty (0 ms)
26: [----------] 1 test from ManyAutocorrelationTest (0 ms total)
26:
26: [----------] 10 tests from ExpfitTest
26: [ RUN ] ExpfitTest.EffnEXP1
26: [ OK ] ExpfitTest.EffnEXP1 (3 ms)
26: [ RUN ] ExpfitTest.EffnEXP2
26: [ OK ] ExpfitTest.EffnEXP2 (3 ms)
26: [ RUN ] ExpfitTest.EffnEXPEXP
26: [ OK ] ExpfitTest.EffnEXPEXP (5 ms)
26: [ RUN ] ExpfitTest.EffnEXP5
26: [ OK ] ExpfitTest.EffnEXP5 (18 ms)
26: [ RUN ] ExpfitTest.EffnEXP7
26: [ OK ] ExpfitTest.EffnEXP7 (15 ms)
26: [ RUN ] ExpfitTest.EffnEXP9
26: [ OK ] ExpfitTest.EffnEXP9 (98 ms)
26: [ RUN ] ExpfitTest.EffnERF
26: [ OK ] ExpfitTest.EffnERF (8 ms)
26: [ RUN ] ExpfitTest.EffnERREST
26: [ OK ] ExpfitTest.EffnERREST (2 ms)
26: [ RUN ] ExpfitTest.EffnVAC
26: [ OK ] ExpfitTest.EffnVAC (35 ms)
26: [ RUN ] ExpfitTest.EffnPRES
26: [ OK ] ExpfitTest.EffnPRES (60 ms)
26: [----------] 10 tests from ExpfitTest (247 ms total)
26:
26: [----------] Global test environment tear-down
26: [==========] 21 tests from 3 test cases ran. (426 ms total)
26: [ PASSED ] 21 tests.
26/33 Test #26: CorrelationsTest ................. Passed 0.44 sec
test 27
Start 27: AnalysisDataUnitTests
27: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/analysisdata-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/AnalysisDataUnitTests.xml"
27: Test timeout computed to be: 30
27: [==========] Running 69 tests from 14 test cases.
27: [----------] Global test environment set-up.
27: [----------] 3 tests from AnalysisDataInitializationTest
27: [ RUN ] AnalysisDataInitializationTest.BasicInitialization
27: [ OK ] AnalysisDataInitializationTest.BasicInitialization (1 ms)
27: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules
27: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (0 ms)
27: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules
27: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms)
27: [----------] 3 tests from AnalysisDataInitializationTest (1 ms total)
27:
27: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData
27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (3 ms)
27: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly
27: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (3 ms)
27: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (3 ms)
27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames
27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (5 ms)
27: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks
27: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (1 ms)
27: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData
27: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (2 ms)
27: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks
27: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (2 ms)
27: [----------] 8 tests from AnalysisDataCommonTest/0 (23 ms total)
27:
27: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData
27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly
27: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (3 ms)
27: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames
27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (6 ms)
27: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks
27: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (2 ms)
27: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData
27: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (2 ms)
27: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks
27: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (2 ms)
27: [----------] 8 tests from AnalysisDataCommonTest/1 (27 ms total)
27:
27: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData
27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (5 ms)
27: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly
27: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (5 ms)
27: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames
27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (7 ms)
27: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks
27: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (2 ms)
27: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData
27: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (3 ms)
27: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks
27: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (2 ms)
27: [----------] 8 tests from AnalysisDataCommonTest/2 (32 ms total)
27:
27: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData
27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (5 ms)
27: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly
27: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (5 ms)
27: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly
27: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (4 ms)
27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames
27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (7 ms)
27: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks
27: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (2 ms)
27: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData
27: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (3 ms)
27: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks
27: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (2 ms)
27: [----------] 8 tests from AnalysisDataCommonTest/3 (32 ms total)
27:
27: [----------] 4 tests from AnalysisArrayDataTest
27: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly
27: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (4 ms)
27: [ RUN ] AnalysisArrayDataTest.StorageWorks
27: [ OK ] AnalysisArrayDataTest.StorageWorks (2 ms)
27: [ RUN ] AnalysisArrayDataTest.CanSetXAxis
27: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms)
27: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount
27: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms)
27: [----------] 4 tests from AnalysisArrayDataTest (7 ms total)
27:
27: [----------] 6 tests from AverageModuleTest
27: [ RUN ] AverageModuleTest.BasicTest
27: [ OK ] AverageModuleTest.BasicTest (4 ms)
27: [ RUN ] AverageModuleTest.HandlesMultipointData
27: [ OK ] AverageModuleTest.HandlesMultipointData (4 ms)
27: [ RUN ] AverageModuleTest.HandlesMultipleDataSets
27: [ OK ] AverageModuleTest.HandlesMultipleDataSets (5 ms)
27: [ RUN ] AverageModuleTest.HandlesDataSetAveraging
27: [ OK ] AverageModuleTest.HandlesDataSetAveraging (5 ms)
27: [ RUN ] AverageModuleTest.CanCustomizeXAxis
27: [ OK ] AverageModuleTest.CanCustomizeXAxis (4 ms)
27: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis
27: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (4 ms)
27: [----------] 6 tests from AverageModuleTest (26 ms total)
27:
27: [----------] 2 tests from FrameAverageModuleTest
27: [ RUN ] FrameAverageModuleTest.BasicTest
27: [ OK ] FrameAverageModuleTest.BasicTest (4 ms)
27: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets
27: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (5 ms)
27: [----------] 2 tests from FrameAverageModuleTest (9 ms total)
27:
27: [----------] 7 tests from AnalysisHistogramSettingsTest
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBins (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins (0 ms)
27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange
27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange (0 ms)
27: [----------] 7 tests from AnalysisHistogramSettingsTest (0 ms total)
27:
27: [----------] 2 tests from SimpleHistogramModuleTest
27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly
27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (6 ms)
27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll
27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (6 ms)
27: [----------] 2 tests from SimpleHistogramModuleTest (13 ms total)
27:
27: [----------] 3 tests from WeightedHistogramModuleTest
27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly
27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (6 ms)
27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll
27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (7 ms)
27: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets
27: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (6 ms)
27: [----------] 3 tests from WeightedHistogramModuleTest (19 ms total)
27:
27: [----------] 3 tests from BinAverageModuleTest
27: [ RUN ] BinAverageModuleTest.ComputesCorrectly
27: [ OK ] BinAverageModuleTest.ComputesCorrectly (5 ms)
27: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll
27: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (5 ms)
27: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets
27: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (5 ms)
27: [----------] 3 tests from BinAverageModuleTest (16 ms total)
27:
27: [----------] 4 tests from AbstractAverageHistogramTest
27: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly
27: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (10 ms)
27: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram
27: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (6 ms)
27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth
27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (7 ms)
27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins
27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (6 ms)
27: [----------] 4 tests from AbstractAverageHistogramTest (29 ms total)
27:
27: [----------] 3 tests from LifetimeModuleTest
27: [ RUN ] LifetimeModuleTest.BasicTest
27: [ OK ] LifetimeModuleTest.BasicTest (4 ms)
27: [ RUN ] LifetimeModuleTest.CumulativeTest
27: [ OK ] LifetimeModuleTest.CumulativeTest (4 ms)
27: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets
27: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (4 ms)
27: [----------] 3 tests from LifetimeModuleTest (13 ms total)
27:
27: [----------] Global test environment tear-down
27: [==========] 69 tests from 14 test cases ran. (247 ms total)
27: [ PASSED ] 69 tests.
27/33 Test #27: AnalysisDataUnitTests ............ Passed 0.27 sec
test 28
Start 28: SelectionUnitTests
28: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/selection-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/SelectionUnitTests.xml"
28: Test timeout computed to be: 30
28: [==========] Running 190 tests from 10 test cases.
28: [----------] Global test environment set-up.
28: [----------] 1 test from IndexGroupTest
28: [ RUN ] IndexGroupTest.RemovesDuplicates
28: [ OK ] IndexGroupTest.RemovesDuplicates (0 ms)
28: [----------] 1 test from IndexGroupTest (0 ms total)
28:
28: [----------] 15 tests from IndexBlockTest
28: [ RUN ] IndexBlockTest.CreatesUnknownBlock
28: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms)
28: [ RUN ] IndexBlockTest.CreatesAtomBlock
28: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms)
28: [ RUN ] IndexBlockTest.CreatesResidueBlock
28: [ OK ] IndexBlockTest.CreatesResidueBlock (0 ms)
28: [ RUN ] IndexBlockTest.CreatesMoleculeBlock
28: [ OK ] IndexBlockTest.CreatesMoleculeBlock (1 ms)
28: [ RUN ] IndexBlockTest.CreatesResidueBlockWithCompletion
28: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (0 ms)
28: [ RUN ] IndexBlockTest.CreatesMoleculeBlockWithCompletion
28: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (0 ms)
28: [ RUN ] IndexBlockTest.CreatesSingleBlock
28: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive
28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms)
28: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive
28: [ OK ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksNegative
28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksNegative (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial
28: [ OK ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive
28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative
28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive
28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms)
28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative
28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms)
28: [----------] 15 tests from IndexBlockTest (2 ms total)
28:
28: [----------] 11 tests from IndexMapTest
28: [ RUN ] IndexMapTest.InitializesAtomBlock
28: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms)
28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom
28: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms)
28: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle
28: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (1 ms)
28: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue
28: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms)
28: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule
28: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms)
28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll
28: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms)
28: [ RUN ] IndexMapTest.InitializesMoleculeBlock
28: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms)
28: [ RUN ] IndexMapTest.MapsSingleBlock
28: [ OK ] IndexMapTest.MapsSingleBlock (0 ms)
28: [ RUN ] IndexMapTest.MapsResidueBlocks
28: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms)
28: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask
28: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (1 ms)
28: [ RUN ] IndexMapTest.HandlesMultipleRequests
28: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms)
28: [----------] 11 tests from IndexMapTest (4 ms total)
28:
28: [----------] 15 tests from NeighborhoodSearchTest
28: [ RUN ] NeighborhoodSearchTest.SimpleSearch
28: [ OK ] NeighborhoodSearchTest.SimpleSearch (36 ms)
28: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY
28: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (35 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearchBox
28: [ OK ] NeighborhoodSearchTest.GridSearchBox (5 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic
28: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (23 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC
28: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (11 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC
28: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (6 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox
28: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (6 ms)
28: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch
28: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch
28: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (104 ms)
28: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches
28: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms)
28: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC
28: [ OK ] NeighborhoodSearchTest.HandlesNoPBC (0 ms)
28: [ RUN ] NeighborhoodSearchTest.HandlesNullPBC
28: [ OK ] NeighborhoodSearchTest.HandlesNullPBC (0 ms)
28: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs
28: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms)
28: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions
28: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (8 ms)
28: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions
28: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (2 ms)
28: [----------] 15 tests from NeighborhoodSearchTest (236 ms total)
28:
28: [----------] 12 tests from PositionCalculationTest
28: [ RUN ] PositionCalculationTest.ComputesAtomPositions
28: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms)
28: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions
28: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms)
28: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions
28: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms)
28: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions
28: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (1 ms)
28: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions
28: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms)
28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole
28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms)
28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax
28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms)
28: [ RUN ] PositionCalculationTest.ComputesPositionMask
28: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms)
28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms
28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (1 ms)
28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2
28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms)
28: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations
28: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (1 ms)
28: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations
28: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms)
28: [----------] 12 tests from PositionCalculationTest (5 ms total)
28:
28: [----------] 30 tests from SelectionCollectionTest
28: [ RUN ] SelectionCollectionTest.HandlesNoSelections
28: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType
28: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests
28: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry
28: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms)
28: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile
28: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace
28: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions
28: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions
28: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue
28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2
28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3
28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1
28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2
28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1
28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2
28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference
28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed
28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup
28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed
28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms)
28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2
28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo
28: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes
28: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo
28: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation
28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2
28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (1 ms)
28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3
28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets
28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2
28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3
28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms)
28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4
28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (2 ms)
28: [----------] 30 tests from SelectionCollectionTest (24 ms total)
28:
28: [----------] 14 tests from SelectionCollectionInteractiveTest
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput
28: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation
28: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput
28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput
28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups
28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections
28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus
28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus
28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus
28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline
28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections
28: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (2 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine
28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput
28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (1 ms)
28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively
28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms)
28: [----------] 14 tests from SelectionCollectionInteractiveTest (22 ms total)
28:
28: [----------] 66 tests from SelectionCollectionDataTest
28: [ RUN ] SelectionCollectionDataTest.HandlesAllNone
28: [ OK ] SelectionCollectionDataTest.HandlesAllNone (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr
28: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesResnr
28: [ OK ] SelectionCollectionDataTest.HandlesResnr (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesResIndex
28: [ OK ] SelectionCollectionDataTest.HandlesResIndex (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex
28: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesAtomname
28: [ OK ] SelectionCollectionDataTest.HandlesAtomname (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname
28: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype
28: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesChain
28: [ OK ] SelectionCollectionDataTest.HandlesChain (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesMass
28: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesCharge
28: [ OK ] SelectionCollectionDataTest.HandlesCharge (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc
28: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode
28: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy
28: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesBeta
28: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesResname
28: [ OK ] SelectionCollectionDataTest.HandlesResname (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords
28: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue
28: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName
28: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords
28: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (5 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword
28: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword
28: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword
28: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword
28: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (11 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier
28: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (5 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier
28: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (7 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier
28: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (7 ms)
28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges
28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (4 ms)
28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology
28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets
28: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames
28: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections
28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed
28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections
28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed
28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions
28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers
28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions
28: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges
28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges
28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode
28: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching
28: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching
28: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean
28: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters
28: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions
28: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame
28: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords
28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods
28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions
28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic
28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons
28: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions
28: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (5 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables
28: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables
28: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (5 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables
28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier
28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable
28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables
28: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis
28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (6 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables
28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables
28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (4 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables
28: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups
28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (3 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups
28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (2 ms)
28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2
28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (3 ms)
28: [----------] 66 tests from SelectionCollectionDataTest (178 ms total)
28:
28: [----------] 17 tests from SelectionOptionTest
28: [ RUN ] SelectionOptionTest.ParsesSimpleSelection
28: [ OK ] SelectionOptionTest.ParsesSimpleSelection (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired
28: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired
28: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (1 ms)
28: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired
28: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (1 ms)
28: [ RUN ] SelectionOptionTest.ChecksEmptySelections
28: [ OK ] SelectionOptionTest.ChecksEmptySelections (1 ms)
28: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections
28: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesTooManySelections
28: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesTooFewSelections
28: [ OK ] SelectionOptionTest.HandlesTooFewSelections (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText
28: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesAdjuster
28: [ OK ] SelectionOptionTest.HandlesAdjuster (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster
28: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster
28: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster
28: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection
28: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections
28: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms)
28: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection
28: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (1 ms)
28: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster
28: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms)
28: [----------] 17 tests from SelectionOptionTest (10 ms total)
28:
28: [----------] 9 tests from SelectionFileOptionTest
28: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile
28: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (1 ms)
28: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions
28: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (1 ms)
28: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile
28: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms)
28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile
28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (1 ms)
28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet
28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms)
28: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile
28: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms)
28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile
28: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms)
28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile
28: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms)
28: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles
28: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (1 ms)
28: [----------] 9 tests from SelectionFileOptionTest (6 ms total)
28:
28: [----------] Global test environment tear-down
28: [==========] 190 tests from 10 test cases ran. (489 ms total)
28: [ PASSED ] 190 tests.
28/33 Test #28: SelectionUnitTests ............... Passed 0.52 sec
test 29
Start 29: TrajectoryAnalysisUnitTests
29: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/trajectoryanalysis-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/TrajectoryAnalysisUnitTests.xml"
29: Test timeout computed to be: 30
29: [==========] Running 68 tests from 13 test cases.
29: [----------] Global test environment set-up.
29: [----------] 5 tests from ClustsizeTest
29: [ RUN ] ClustsizeTest.NoMolDefaultCutoff
29: Reading frames from pdb file
Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements
29: There is one group in the index
29: '', 24 atoms
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Total number of atoms in clusters = 24
29: cmid: 2, cmax: 4, max_size: 6
29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6
29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (3 ms)
29: [ RUN ] ClustsizeTest.NoMolShortCutoff
29: Reading frames from pdb file
Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements
29: There is one group in the index
29: '', 24 atoms
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Total number of atoms in clusters = 24
29: cmid: 1, cmax: 6, max_size: 6
29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6
29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (3 ms)
29: [ RUN ] ClustsizeTest.MolDefaultCutoff
29: Reading frames from pdb file
Reading frame 0 time 0.000 Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: '', 24 atoms
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Total number of atoms in clusters = 8
29: cmid: 2, cmax: 4, max_size: 2
29: 50%100%cmid: 2, cmax: 6, max_size: 2
29: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (6 ms)
29: [ RUN ] ClustsizeTest.MolShortCutoff
29: Reading frames from pdb file
Reading frame 0 time 0.000 Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: '', 24 atoms
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Total number of atoms in clusters = 8
29: cmid: 1, cmax: 6, max_size: 2
29: 50%100%cmid: 2, cmax: 6, max_size: 2
29: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (6 ms)
29: [ RUN ] ClustsizeTest.MolCSize
29: Reading frames from pdb file
Reading frame 0 time 0.000 Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision)
29: '', 24 atoms
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Total number of atoms in clusters = 8
29: cmid: 2, cmax: 4, max_size: 2
29: 50%100%cmid: 2, cmax: 6, max_size: 2
29: 50%100%[ OK ] ClustsizeTest.MolCSize (6 ms)
29: [----------] 5 tests from ClustsizeTest (26 ms total)
29:
29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest
29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp
29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (2 ms)
29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory
29: Reading frames from gro file 'Test system', 8 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (6 ms)
29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset
29: Reading frames from gro file 'Test system', 8 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (6 ms)
29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory
29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms)
29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (15 ms total)
29:
29: [----------] 11 tests from AngleModuleTest
29: [ RUN ] AngleModuleTest.ComputesSimpleAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesSimpleAngles (9 ms)
29: [ RUN ] AngleModuleTest.ComputesDihedrals
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesDihedrals (8 ms)
29: [ RUN ] AngleModuleTest.ComputesVectorPairAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesVectorPairAngles (9 ms)
29: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (9 ms)
29: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (8 ms)
29: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (9 ms)
29: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles
29: Reading frames from gro file 'Test system for different angles', 33 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (9 ms)
29: [ RUN ] AngleModuleTest.ComputesMultipleAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.ComputesMultipleAngles (10 ms)
29: [ RUN ] AngleModuleTest.HandlesDynamicSelections
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.HandlesDynamicSelections (9 ms)
29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (9 ms)
29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (9 ms)
29: [----------] 11 tests from AngleModuleTest (99 ms total)
29:
29: [----------] 3 tests from DistanceModuleTest
29: [ RUN ] DistanceModuleTest.ComputesDistances
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: atomname S1 S2:
29: Number of samples: 5
29: Average distance: 1.43246 nm
29: Standard deviation: 0.96700 nm
29: [ OK ] DistanceModuleTest.ComputesDistances (11 ms)
29: [ RUN ] DistanceModuleTest.ComputesMultipleDistances
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: atomname S1 S2:
29: Number of samples: 5
29: Average distance: 1.43246 nm
29: Standard deviation: 0.96700 nm
29: resindex 1 to 4 and atomname CB merge resindex 2 to 5 and atomname CB:
29: Number of samples: 4
29: Average distance: 1.81066 nm
29: Standard deviation: 0.79289 nm
29: [ OK ] DistanceModuleTest.ComputesMultipleDistances (14 ms)
29: [ RUN ] DistanceModuleTest.HandlesDynamicSelections
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: atomname S1 S2 and res_cog x < 2.8:
29: Number of samples: 3
29: Average distance: 1.72076 nm
29: Standard deviation: 1.24839 nm
29: [ OK ] DistanceModuleTest.HandlesDynamicSelections (12 ms)
29: [----------] 3 tests from DistanceModuleTest (38 ms total)
29:
29: [----------] 2 tests from FreeVolumeModuleTest
29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision)
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision)
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for CO2-RM. Set to zero.
29: Could not determine VDW radius for 40 particles. These were set to zero.
29:
Reading frame 0 time 0.000
Last frame 0 time 0.000
29: Analyzed 1 frames, last time 0.000
29: cutoff = 0.18 nm
29: probe_radius = 0 nm
29: seed = 13
29: ninsert = 1000 probes per nm^3
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David
29: van der Spoel and Luciano T. Costa
29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium
29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View
29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429
29: -------- -------- --- Thank You --- -------- --------
29:
29: Free volume 38.02 +/- 0.00 %
29: Total volume 68.92 +/- 0.00 nm^3
29: Number of molecules 340 total mass 63491.38 Dalton
29: Average molar mass: 186.74 Dalton
29: Density rho: 1529.71 +/- 0.00 nm^3
29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3
29: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3
29: Fractional free volume 0.194 +/- 0.000
29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (433 ms)
29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision)
29: Reading file /<<PKGBUILDDIR>>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision)
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
Reading frame 0 time 0.000
Last frame 0 time 0.000
29: Analyzed 1 frames, last time 0.000
29: cutoff = 0.18 nm
29: probe_radius = 0 nm
29: seed = 17
29: ninsert = 1000 probes per nm^3
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David
29: van der Spoel and Luciano T. Costa
29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium
29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View
29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429
29: -------- -------- --- Thank You --- -------- --------
29:
29: Free volume 38.48 +/- 0.00 %
29: Total volume 68.92 +/- 0.00 nm^3
29: Number of molecules 340 total mass 63491.38 Dalton
29: Average molar mass: 186.74 Dalton
29: Density rho: 1529.71 +/- 0.00 nm^3
29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3
29: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3
29: Fractional free volume 0.200 +/- 0.000
29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (434 ms)
29: [----------] 2 tests from FreeVolumeModuleTest (867 ms total)
29:
29: [----------] 7 tests from PairDistanceModuleTest
29: [ RUN ] PairDistanceModuleTest.ComputesAllDistances
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesAllDistances (7 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (8 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (7 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (7 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (7 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (8 ms)
29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (7 ms)
29: [----------] 7 tests from PairDistanceModuleTest (51 ms total)
29:
29: [----------] 3 tests from RdfModuleTest
29: [ RUN ] RdfModuleTest.BasicTest
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] RdfModuleTest.BasicTest (53 ms)
29: [ RUN ] RdfModuleTest.CalculatesSurf
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] RdfModuleTest.CalculatesSurf (29 ms)
29: [ RUN ] RdfModuleTest.CalculatesXY
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] RdfModuleTest.CalculatesXY (68 ms)
29: [----------] 3 tests from RdfModuleTest (150 ms total)
29:
29: [----------] 5 tests from SasaModuleTest
29: [ RUN ] SasaModuleTest.BasicTest
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and
29: Michael Scharf
29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration
29: of Surface Area and Volume and to Dot Surface Contouring of Molecular
29: Assemblies
29: J. Comp. Chem. 16 (1995) pp. 273-284
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29: [ OK ] SasaModuleTest.BasicTest (26 ms)
29: [ RUN ] SasaModuleTest.HandlesSelectedResidues
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and
29: Michael Scharf
29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration
29: of Surface Area and Volume and to Dot Surface Contouring of Molecular
29: Assemblies
29: J. Comp. Chem. 16 (1995) pp. 273-284
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29: [ OK ] SasaModuleTest.HandlesSelectedResidues (16 ms)
29: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and
29: Michael Scharf
29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration
29: of Surface Area and Volume and to Dot Surface Contouring of Molecular
29: Assemblies
29: J. Comp. Chem. 16 (1995) pp. 273-284
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (16 ms)
29: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and
29: Michael Scharf
29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration
29: of Surface Area and Volume and to Dot Surface Contouring of Molecular
29: Assemblies
29: J. Comp. Chem. 16 (1995) pp. 273-284
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (20 ms)
29: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and
29: Michael Scharf
29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration
29: of Surface Area and Volume and to Dot Surface Contouring of Molecular
29: Assemblies
29: J. Comp. Chem. 16 (1995) pp. 273-284
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii
29: from the source below. This means the results may be different
29: compared to previous GROMACS versions.
29:
29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++
29: A. Bondi
29: van der Waals Volumes and Radii
29: J. Phys. Chem. 68 (1964) pp. 441-451
29: -------- -------- --- Thank You --- -------- --------
29:
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (19 ms)
29: [----------] 5 tests from SasaModuleTest (101 ms total)
29:
29: [----------] 8 tests from SelectModuleTest
29: [ RUN ] SelectModuleTest.BasicTest
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.BasicTest (16 ms)
29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (11 ms)
29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (11 ms)
29: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (12 ms)
29: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (12 ms)
29: [ RUN ] SelectModuleTest.NormalizesSizes
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.NormalizesSizes (8 ms)
29: [ RUN ] SelectModuleTest.WritesResidueNumbers
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.WritesResidueNumbers (6 ms)
29: [ RUN ] SelectModuleTest.WritesResidueIndices
29:
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29: Analyzed topology coordinates
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] SelectModuleTest.WritesResidueIndices (7 ms)
29: [----------] 8 tests from SelectModuleTest (84 ms total)
29:
29: [----------] 10 tests from SurfaceAreaTest
29: [ RUN ] SurfaceAreaTest.ComputesSinglePoint
29: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms)
29: [ RUN ] SurfaceAreaTest.ComputesTwoPoints
29: [ OK ] SurfaceAreaTest.ComputesTwoPoints (3 ms)
29: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius
29: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (3 ms)
29: [ RUN ] SurfaceAreaTest.SurfacePoints12
29: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms)
29: [ RUN ] SurfaceAreaTest.SurfacePoints32
29: [ OK ] SurfaceAreaTest.SurfacePoints32 (1 ms)
29: [ RUN ] SurfaceAreaTest.SurfacePoints42
29: [ OK ] SurfaceAreaTest.SurfacePoints42 (1 ms)
29: [ RUN ] SurfaceAreaTest.SurfacePoints122
29: [ OK ] SurfaceAreaTest.SurfacePoints122 (1 ms)
29: [ RUN ] SurfaceAreaTest.Computes100Points
29: [ OK ] SurfaceAreaTest.Computes100Points (2 ms)
29: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC
29: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (6 ms)
29: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC
29: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (8 ms)
29: [----------] 10 tests from SurfaceAreaTest (25 ms total)
29:
29: [----------] 4 tests from TrajectoryModuleTest
29: [ RUN ] TrajectoryModuleTest.BasicTest
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryModuleTest.BasicTest (8 ms)
29: [ RUN ] TrajectoryModuleTest.PlotsXOnly
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryModuleTest.PlotsXOnly (8 ms)
29: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (8 ms)
29: [ RUN ] TrajectoryModuleTest.HandlesNoForces
29: Reading frames from gro file 'Test system', 15 atoms.
29:
Reading frame 0 time 0.000
29: WARNING: If there are molecules in the input trajectory file
29: that are broken across periodic boundaries, they
29: cannot be made whole (or treated as whole) without
29: you providing a run input file.
29:
29:
Reading frame 1 time 0.000
Last frame 1 time 0.000
29: Analyzed 2 frames, last time 0.000
29:
29: WARNING: Masses and atomic (Van der Waals) radii will be guessed
29: based on residue and atom names, since they could not be
29: definitively assigned from the information in your input
29: files. These guessed numbers might deviate from the mass
29: and radius of the atom type. Please check the output
29: files if necessary.
29:
29: [ OK ] TrajectoryModuleTest.HandlesNoForces (7 ms)
29: [----------] 4 tests from TrajectoryModuleTest (31 ms total)
29:
29: [----------] 5 tests from UnionFinderTest
29: [ RUN ] UnionFinderTest.WorksEmpty
29: [ OK ] UnionFinderTest.WorksEmpty (0 ms)
29: [ RUN ] UnionFinderTest.BasicMerges
29: [ OK ] UnionFinderTest.BasicMerges (1 ms)
29: [ RUN ] UnionFinderTest.LargerMerges
29: [ OK ] UnionFinderTest.LargerMerges (0 ms)
29: [ RUN ] UnionFinderTest.LongRightMerge
29: [ OK ] UnionFinderTest.LongRightMerge (0 ms)
29: [ RUN ] UnionFinderTest.LongLeftMerge
29: [ OK ] UnionFinderTest.LongLeftMerge (0 ms)
29: [----------] 5 tests from UnionFinderTest (1 ms total)
29:
29: [----------] 1 test from MappedUnionFinderTest
29: [ RUN ] MappedUnionFinderTest.BasicMerges
29: [ OK ] MappedUnionFinderTest.BasicMerges (0 ms)
29: [----------] 1 test from MappedUnionFinderTest (0 ms total)
29:
29: [----------] Global test environment tear-down
29: [==========] 68 tests from 13 test cases ran. (1490 ms total)
29: [ PASSED ] 68 tests.
29/33 Test #29: TrajectoryAnalysisUnitTests ...... Passed 1.51 sec
test 30
Start 30: EnergyAnalysisUnitTests
30: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/energyanalysis-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/EnergyAnalysisUnitTests.xml"
30: Test timeout computed to be: 30
30: [==========] Running 7 tests from 4 test cases.
30: [----------] Global test environment set-up.
30: [----------] 1 test from DhdlTest
30: [ RUN ] DhdlTest.ExtractDhdl
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/dhdl.edr as double precision energy file
30: Reading file /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/dhdl.tpr, VERSION 2016-dev-20160810-e3ded7f (double precision)
30: Note: file tpx version 110, software tpx version 112
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.010
Reading energy frame 2 time 0.020
Reading energy frame 3 time 0.030
Reading energy frame 4 time 0.040
Reading energy frame 5 time 0.050
Reading energy frame 6 time 0.060
Reading energy frame 7 time 0.070
Reading energy frame 8 time 0.080
Reading energy frame 9 time 0.090
Reading energy frame 10 time 0.100
Reading energy frame 11 time 0.110
Reading energy frame 12 time 0.120
Reading energy frame 13 time 0.130
Reading energy frame 14 time 0.140
Reading energy frame 15 time 0.150
Reading energy frame 16 time 0.160
Reading energy frame 17 time 0.170
Reading energy frame 18 time 0.180
Reading energy frame 19 time 0.190
Reading energy frame 20 time 0.200
Reading energy frame 30 time 0.300
Reading energy frame 40 time 0.400
Reading energy frame 50 time 0.500
Reading energy frame 60 time 0.600
Reading energy frame 70 time 0.700
Reading energy frame 80 time 0.800
Reading energy frame 90 time 0.900
Reading energy frame 100 time 1.000
Last energy frame read 100 time 1.000
30:
30:
30: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /<<PKGBUILDDIR>>/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg
30: [ OK ] DhdlTest.ExtractDhdl (49 ms)
30: [----------] 1 test from DhdlTest (50 ms total)
30:
30: [----------] 1 test from OriresTest
30: [ RUN ] OriresTest.ExtractOrires
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/orires.edr as single precision energy file
30: Reading file /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/orires.tpr, VERSION 2017-dev-20170725-fea8651 (single precision)
30: Note: file tpx version 111, software tpx version 112
30: Found 7 orientation restraints with 1 experimentsSelect the orientation restraint labels you want (-1 is all)
30: End your selection with 0
30: Selecting all 7 orientation restraints
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.002
Reading energy frame 2 time 0.004
Reading energy frame 3 time 0.006
Reading energy frame 4 time 0.008
Reading energy frame 5 time 0.010
Reading energy frame 6 time 0.012
Reading energy frame 7 time 0.014
Reading energy frame 8 time 0.016
Reading energy frame 9 time 0.018
Reading energy frame 10 time 0.020
Last energy frame read 10 time 0.020
30: [ OK ] OriresTest.ExtractOrires (72 ms)
30: [----------] 1 test from OriresTest (72 ms total)
30:
30: [----------] 3 tests from EnergyTest
30: [ RUN ] EnergyTest.ExtractEnergy
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file
30:
30: Select the terms you want from the following list by
30: selecting either (part of) the name or the number or a combination.
30: End your selection with an empty line or a zero.
30: -------------------------------------------------------------------
30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip.
30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature
30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y
30: 13 Box-Z 14 Volume 15 Density 16 pV
30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ
30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX
30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY
30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ
30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen
30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System
30:
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.200
Reading energy frame 2 time 0.400
Reading energy frame 3 time 0.600
Reading energy frame 4 time 0.800
Reading energy frame 5 time 1.000
Reading energy frame 6 time 1.200
Reading energy frame 7 time 1.400
Reading energy frame 8 time 1.600
Reading energy frame 9 time 1.800
Reading energy frame 10 time 2.000
Reading energy frame 11 time 2.200
Reading energy frame 12 time 2.400
Reading energy frame 13 time 2.600
Reading energy frame 14 time 2.800
Reading energy frame 15 time 3.000
Reading energy frame 16 time 3.200
Reading energy frame 17 time 3.400
Reading energy frame 18 time 3.600
Reading energy frame 19 time 3.800
Reading energy frame 20 time 4.000
Reading energy frame 30 time 6.000
Reading energy frame 40 time 8.000
Reading energy frame 50 time 10.000
Last energy frame read 50 time 10.000
30:
30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets
30: All statistics are over 5001 points
30:
30: Energy Average Err.Est. RMSD Tot-Drift
30: -------------------------------------------------------------------------------
30: Potential -34142.2 39 228.993 -62.8906 (kJ/mol)
30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol)
30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol)
30: [ OK ] EnergyTest.ExtractEnergy (12 ms)
30: [ RUN ] EnergyTest.ExtractEnergyByNumber
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file
30:
30: Select the terms you want from the following list by
30: selecting either (part of) the name or the number or a combination.
30: End your selection with an empty line or a zero.
30: -------------------------------------------------------------------
30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip.
30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature
30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y
30: 13 Box-Z 14 Volume 15 Density 16 pV
30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ
30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX
30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY
30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ
30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen
30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System
30:
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.200
Reading energy frame 2 time 0.400
Reading energy frame 3 time 0.600
Reading energy frame 4 time 0.800
Reading energy frame 5 time 1.000
Reading energy frame 6 time 1.200
Reading energy frame 7 time 1.400
Reading energy frame 8 time 1.600
Reading energy frame 9 time 1.800
Reading energy frame 10 time 2.000
Reading energy frame 11 time 2.200
Reading energy frame 12 time 2.400
Reading energy frame 13 time 2.600
Reading energy frame 14 time 2.800
Reading energy frame 15 time 3.000
Reading energy frame 16 time 3.200
Reading energy frame 17 time 3.400
Reading energy frame 18 time 3.600
Reading energy frame 19 time 3.800
Reading energy frame 20 time 4.000
Reading energy frame 30 time 6.000
Reading energy frame 40 time 8.000
Reading energy frame 50 time 10.000
Last energy frame read 50 time 10.000
30:
30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets
30: All statistics are over 5001 points
30:
30: Energy Average Err.Est. RMSD Tot-Drift
30: -------------------------------------------------------------------------------
30: Coul. recip. 302.771 2.8 17.5152 12.5403 (kJ/mol)
30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol)
30: Pres. DC -268.49 3 8.52175 13.2804 (bar)
30: [ OK ] EnergyTest.ExtractEnergyByNumber (12 ms)
30: [ RUN ] EnergyTest.ExtractEnergyMixed
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file
30:
30: Select the terms you want from the following list by
30: selecting either (part of) the name or the number or a combination.
30: End your selection with an empty line or a zero.
30: -------------------------------------------------------------------
30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip.
30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature
30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y
30: 13 Box-Z 14 Volume 15 Density 16 pV
30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ
30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX
30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY
30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ
30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen
30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System
30:
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.200
Reading energy frame 2 time 0.400
Reading energy frame 3 time 0.600
Reading energy frame 4 time 0.800
Reading energy frame 5 time 1.000
Reading energy frame 6 time 1.200
Reading energy frame 7 time 1.400
Reading energy frame 8 time 1.600
Reading energy frame 9 time 1.800
Reading energy frame 10 time 2.000
Reading energy frame 11 time 2.200
Reading energy frame 12 time 2.400
Reading energy frame 13 time 2.600
Reading energy frame 14 time 2.800
Reading energy frame 15 time 3.000
Reading energy frame 16 time 3.200
Reading energy frame 17 time 3.400
Reading energy frame 18 time 3.600
Reading energy frame 19 time 3.800
Reading energy frame 20 time 4.000
Reading energy frame 30 time 6.000
Reading energy frame 40 time 8.000
Reading energy frame 50 time 10.000
Last energy frame read 50 time 10.000
30:
30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 4 data sets
30: All statistics are over 5001 points
30:
30: Energy Average Err.Est. RMSD Tot-Drift
30: -------------------------------------------------------------------------------
30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol)
30: Pressure 5.34371 4.1 605.307 -4.88771 (bar)
30: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm)
30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3)
30: [ OK ] EnergyTest.ExtractEnergyMixed (12 ms)
30: [----------] 3 tests from EnergyTest (37 ms total)
30:
30: [----------] 2 tests from ViscosityTest
30: [ RUN ] ViscosityTest.EinsteinViscosity
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.200
Reading energy frame 2 time 0.400
Reading energy frame 3 time 0.600
Reading energy frame 4 time 0.800
Reading energy frame 5 time 1.000
Reading energy frame 6 time 1.200
Reading energy frame 7 time 1.400
Reading energy frame 8 time 1.600
Reading energy frame 9 time 1.800
Reading energy frame 10 time 2.000
Reading energy frame 11 time 2.200
Reading energy frame 12 time 2.400
Reading energy frame 13 time 2.600
Reading energy frame 14 time 2.800
Reading energy frame 15 time 3.000
Reading energy frame 16 time 3.200
Reading energy frame 17 time 3.400
Reading energy frame 18 time 3.600
Reading energy frame 19 time 3.800
Reading energy frame 20 time 4.000
Reading energy frame 30 time 6.000
Reading energy frame 40 time 8.000
Reading energy frame 50 time 10.000
Last energy frame read 50 time 10.000
30:
30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets
30: All statistics are over 5001 points
30:
30: Energy Average Err.Est. RMSD Tot-Drift
30: -------------------------------------------------------------------------------
30: Pres-XX 20.2092 65 717.193 185.978 (bar)
30: Pres-XY -47.7351 39 372.522 207.456 (bar)
30: Pres-XZ 11.477 31 379.79 6.80818 (bar)
30: Pres-YX -47.7106 39 372.525 207.5 (bar)
30: Pres-YY 38.9241 40 803.899 -27.1505 (bar)
30: Pres-YZ -41.3534 45 401.216 114.663 (bar)
30: Pres-ZX 11.5238 31 379.804 6.91707 (bar)
30: Pres-ZY -41.3119 45 401.196 114.743 (bar)
30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar)
30: Temperature 300.001 0.02 5.8425 -0.0130558 (K)
30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3)
30: Pressure 5.34371 4.1 605.307 -4.88771 (bar)
30: [ OK ] ViscosityTest.EinsteinViscosity (42 ms)
30: [ RUN ] ViscosityTest.EinsteinViscosityIntegral
30: Opened /<<PKGBUILDDIR>>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file
30:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.200
Reading energy frame 2 time 0.400
Reading energy frame 3 time 0.600
Reading energy frame 4 time 0.800
Reading energy frame 5 time 1.000
Reading energy frame 6 time 1.200
Reading energy frame 7 time 1.400
Reading energy frame 8 time 1.600
Reading energy frame 9 time 1.800
Reading energy frame 10 time 2.000
Reading energy frame 11 time 2.200
Reading energy frame 12 time 2.400
Reading energy frame 13 time 2.600
Reading energy frame 14 time 2.800
Reading energy frame 15 time 3.000
Reading energy frame 16 time 3.200
Reading energy frame 17 time 3.400
Reading energy frame 18 time 3.600
Reading energy frame 19 time 3.800
Reading energy frame 20 time 4.000
Reading energy frame 30 time 6.000
Reading energy frame 40 time 8.000
Reading energy frame 50 time 10.000
Last energy frame read 50 time 10.000
30:
30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets
30: All statistics are over 5001 points
30:
30: Energy Average Err.Est. RMSD Tot-Drift
30: -------------------------------------------------------------------------------
30: Pres-XX 20.2092 65 717.193 185.978 (bar)
30: Pres-XY -47.7351 39 372.522 207.456 (bar)
30: Pres-XZ 11.477 31 379.79 6.80818 (bar)
30: Pres-YX -47.7106 39 372.525 207.5 (bar)
30: Pres-YY 38.9241 40 803.899 -27.1505 (bar)
30: Pres-YZ -41.3534 45 401.216 114.663 (bar)
30: Pres-ZX 11.5238 31 379.804 6.91707 (bar)
30: Pres-ZY -41.3119 45 401.196 114.743 (bar)
30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar)
30: Temperature 300.001 0.02 5.8425 -0.0130558 (K)
30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3)
30: Pressure 5.34371 4.1 605.307 -4.88771 (bar)
30: [ OK ] ViscosityTest.EinsteinViscosityIntegral (35 ms)
30: [----------] 2 tests from ViscosityTest (78 ms total)
30:
30: [----------] Global test environment tear-down
30: [==========] 7 tests from 4 test cases ran. (237 ms total)
30: [ PASSED ] 7 tests.
30/33 Test #30: EnergyAnalysisUnitTests .......... Passed 0.25 sec
test 31
Start 31: CompatibilityHelpersTests
31: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/compat-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/CompatibilityHelpersTests.xml"
31: Test timeout computed to be: 30
31: [==========] Running 1 test from 1 test case.
31: [----------] Global test environment set-up.
31: [----------] 1 test from CompatibilityHelper
31: [ RUN ] CompatibilityHelper.MakeUniqueCompiles
31: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms)
31: [----------] 1 test from CompatibilityHelper (0 ms total)
31:
31: [----------] Global test environment tear-down
31: [==========] 1 test from 1 test case ran. (0 ms total)
31: [ PASSED ] 1 test.
31/33 Test #31: CompatibilityHelpersTests ........ Passed 0.02 sec
test 32
Start 32: MdrunTests
32: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/mdrun-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/MdrunTests.xml"
32: Test timeout computed to be: 600
32: [==========] Running 29 tests from 11 test cases.
32: [----------] Global test environment set-up.
32: [----------] 6 tests from BondedInteractionsTest
32: [ RUN ] BondedInteractionsTest.NormalBondWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to 1495311866
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32:
32: NOTE 3 [file BondedInteractionsTest_NormalBondWorks_butane1.top, line 31]:
32: In moleculetype 'butane' 2 atoms are not bound by a potential or
32: constraint to any other atom in the same moleculetype. Although
32: technically this might not cause issues in a simulation, this often means
32: that the user forgot to add a bond/potential/constraint or put multiple
32: molecules in the same moleculetype definition by mistake. Run with -v to
32: get information for each atom.
32:
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 108.891 0.220
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.NormalBondWorks (31 ms)
32: [ RUN ] BondedInteractionsTest.TabulatedBondWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to -2058423159
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32:
32: NOTE 3 [file BondedInteractionsTest_TabulatedBondWorks_butane1.top, line 31]:
32: In moleculetype 'butane' 2 atoms are not bound by a potential or
32: constraint to any other atom in the same moleculetype. Although
32: technically this might not cause issues in a simulation, this often means
32: that the user forgot to add a bond/potential/constraint or put multiple
32: molecules in the same moleculetype definition by mistake. Run with -v to
32: get information for each atom.
32:
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 126.444 0.190
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.TabulatedBondWorks (32 ms)
32: [ RUN ] BondedInteractionsTest.NormalAngleWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to -1699335245
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32:
32: NOTE 3 [file BondedInteractionsTest_NormalAngleWorks_butane1.top, line 31]:
32: In moleculetype 'butane' 1 atoms are not bound by a potential or
32: constraint to any other atom in the same moleculetype. Although
32: technically this might not cause issues in a simulation, this often means
32: that the user forgot to add a bond/potential/constraint or put multiple
32: molecules in the same moleculetype definition by mistake. Run with -v to
32: get information for each atom.
32:
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 129.378 0.186
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.NormalAngleWorks (29 ms)
32: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to -1544034025
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32:
32: NOTE 3 [file BondedInteractionsTest_TabulatedAngleWorks_butane1.top, line 31]:
32: In moleculetype 'butane' 1 atoms are not bound by a potential or
32: constraint to any other atom in the same moleculetype. Although
32: technically this might not cause issues in a simulation, this often means
32: that the user forgot to add a bond/potential/constraint or put multiple
32: molecules in the same moleculetype definition by mistake. Run with -v to
32: get information for each atom.
32:
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 125.960 0.191
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (30 ms)
32: [ RUN ] BondedInteractionsTest.NormalDihedralWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to -1827830330
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 3 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 135.018 0.178
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.NormalDihedralWorks (29 ms)
32: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to 1542594839
32: Generated 3 of the 3 non-bonded parameter combinations
32: Excluding 3 bonded neighbours molecule type 'butane'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]:
32: NVE simulation with an initial temperature of zero: will use a Verlet
32: buffer of 10%. Check your energy drift!
32:
32:
32: There were 3 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/butane1.gro'
32:
32: Reading frames from gro file 'A single butane', 4 atoms.
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Last frame 0 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 119.364 0.201
32: This run will generate roughly 0 Mb of data
32: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (33 ms)
32: [----------] 6 tests from BondedInteractionsTest (185 ms total)
32:
32: [----------] 1 test from GromppTest
32: [ RUN ] GromppTest.EmptyMdpFileWorks
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp, line 1]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32: Setting the LD random seed to -1267401525
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 12.00
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]:
32: NVE simulation: will use the initial temperature of 1046.791 K for
32: determining the Verlet buffer size
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 4 notes
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K
32: Calculated rlist for 1x1 atom pair-list as 1.061 nm, buffer size 0.061 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32: [ OK ] GromppTest.EmptyMdpFileWorks (53 ms)
32: [----------] 1 test from GromppTest (53 ms total)
32:
32: [----------] 1 test from CompelTest
32: [ RUN ] CompelTest.SwapCanRun
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/src/programs/mdrun/tests/OctaneSandwich.mdp]:
32: The Berendsen thermostat does not generate the correct kinetic energy
32: distribution. You might want to consider using the V-rescale thermostat.
32:
32: Setting the LD random seed to -878303478
32: Generated 330891 of the 330891 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 330891 of the 330891 1-4 parameter combinations
32: Excluding 3 bonded neighbours molecule type 'Protein'
32: Excluding 3 bonded neighbours molecule type 'OCT'
32: Excluding 1 bonded neighbours molecule type 'NA'
32: Excluding 1 bonded neighbours molecule type 'CL'
32: Excluding 3 bonded neighbours molecule type 'Protein'
32: Excluding 3 bonded neighbours molecule type 'OCT'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Split0 group 'Ch0' contains 83 atoms.
32: Split1 group 'Ch1' contains 83 atoms.
32: Solvent group 'SOL' contains 11931 atoms.
32: Swap group 'NA+' contains 19 atoms.
32: Swap group 'CL-' contains 19 atoms.
32: Number of degrees of freedom in T-Coupling group System is 27869.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/src/programs/mdrun/tests/OctaneSandwich.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018 (double precision)
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: SWAP: Determining initial numbers of ions per compartment.
32: SWAP: Setting pointers for checkpoint writing
32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules
32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules
32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules
32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules
32: starting mdrun 'Channel_coco in octane membrane'
32: 2 steps, 0.0 ps.
32: turning all bonds into constraints...
32: turning all bonds into constraints...
32: turning all bonds into constraints...
32: turning all bonds into constraints...
32: turning all bonds into constraints...
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K
32: Calculated rlist for 1x1 atom pair-list as 1.314 nm, buffer size 0.314 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.260 nm, buffer size 0.260 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 1 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 2.231 2.231 100.0
32: (ns/day) (hour/ns)
32: Performance: 0.581 41.315
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018 (double precision)
32:
32: Reading checkpoint file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.cpt generated: Fri Jan 26 13:17:06 2018
32:
32:
32: Overriding nsteps with value passed on the command line: 2 steps, 0.01 ps
32: No option -multi
32:
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: SWAP: Setting pointers for checkpoint writing
32: SWAP: Copying channel fluxes from checkpoint file data
32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules
32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules
32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules
32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules
32: starting mdrun 'Channel_coco in octane membrane'
32: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps).
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 1.909 1.909 100.0
32: (ns/day) (hour/ns)
32: Performance: 0.679 35.353
32: [ OK ] CompelTest.SwapCanRun (5456 ms)
32: [----------] 1 test from CompelTest (5456 ms total)
32:
32: [----------] 1 test from ImdTest
32: [ RUN ] ImdTest.ImdCanRun
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/src/programs/mdrun/tests/spc2-IMD.mdp]:
32: The Berendsen thermostat does not generate the correct kinetic energy
32: distribution. You might want to consider using the V-rescale thermostat.
32:
32: Setting the LD random seed to -2106362375
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Group 'SecondWaterMolecule' with 3 atoms can be activated for interactive molecular dynamics (IMD).
32: Number of degrees of freedom in T-Coupling group System is 9.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/src/programs/mdrun/tests/spc2-IMD.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/ImdTest_ImdCanRun.tpr, VERSION 2018 (double precision)
32: Changing nstlist from 10 to 50, rlist from 1.121 to 1.344
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: IMD: Enabled. This simulation will accept incoming IMD connections.
32: IMD: You chose a port number < 1. Will automatically assign a free port.
32: IMD: Pulling from IMD remote is enabled (-imdpull).
32: IMD: Turning on IMD - port for incoming requests is 0.
32: IMD: Setting up incoming socket.
32: IMD: Listening for IMD connection on port 34089.
32: IMD: -imdwait not set, starting simulation.
32: starting mdrun 'spc2'
32: 2 steps, 0.0 ps.
32: turning all bonds into constraints...
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K
32: Calculated rlist for 1x1 atom pair-list as 1.134 nm, buffer size 0.134 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.121 nm, buffer size 0.121 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.078 0.078 100.0
32: (ns/day) (hour/ns)
32: Performance: 13.285 1.807
32: [ OK ] ImdTest.ImdCanRun (110 ms)
32: [----------] 1 test from ImdTest (110 ms total)
32:
32: [----------] 1 test from MdrunTerminationTest
32: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp, line 6]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to 773777633
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 9.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018 (double precision)
32: Changing nstlist from 10 to 1, rlist from 1.024 to 1
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc2'
32: 100 steps, 0.1 ps.
32:
32: Step 1: Run time exceeded 0.000 hours, will terminate the run
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.054 0.054 100.0
32: (ns/day) (hour/ns)
32: Performance: 4.831 4.967
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018 (double precision)
32:
32: Reading checkpoint file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.cpt generated: Fri Jan 26 13:17:09 2018
32:
32:
32: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps
32: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244
32:
32: No option -multi
32:
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc2'
32: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps).
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.032 0.032 100.0
32: (ns/day) (hour/ns)
32: Performance: 8.192 2.930
32: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (134 ms)
32: [----------] 1 test from MdrunTerminationTest (134 ms total)
32:
32: [----------] 1 test from PmeTest
32: [ RUN ] PmeTest.ReproducesEnergies
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp, line 6]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -1019303010
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]:
32: NVE simulation: will use the initial temperature of 1046.791 K for
32: determining the Verlet buffer size
32:
32: Estimate for the relative computational load of the PME mesh part: 1.00
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]:
32: The optimal PME mesh load for parallel simulations is below 0.5
32: and for highly parallel simulations between 0.25 and 0.33,
32: for higher performance, increase the cut-off and the PME grid spacing.
32:
32:
32:
32: There were 3 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 20 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K
32: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.000 nm, buffer size 0.000 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: Calculating fourier grid dimensions for X Y Z
32: Using a fourier grid of 28x28x28, spacing 0.107 0.107 0.107
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.135 0.135 100.0
32: (ns/day) (hour/ns)
32: Performance: 13.465 1.782
32: Opened /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001
Reading energy frame 2 time 0.002
Reading energy frame 3 time 0.003
Reading energy frame 4 time 0.004
Reading energy frame 5 time 0.005
Reading energy frame 6 time 0.006
Reading energy frame 7 time 0.007
Reading energy frame 8 time 0.008
Reading energy frame 9 time 0.009
Reading energy frame 10 time 0.010
Reading energy frame 11 time 0.011
Reading energy frame 12 time 0.012
Reading energy frame 13 time 0.013
Reading energy frame 14 time 0.014
Reading energy frame 15 time 0.015
Reading energy frame 16 time 0.016
Reading energy frame 17 time 0.017
Reading energy frame 18 time 0.018
Reading energy frame 19 time 0.019
Reading energy frame 20 time 0.020 Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 20 steps, 0.0 ps.
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.135 0.135 100.0
32: (ns/day) (hour/ns)
32: Performance: 13.461 1.783
32: Opened /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001
Reading energy frame 2 time 0.002
Reading energy frame 3 time 0.003
Reading energy frame 4 time 0.004
Reading energy frame 5 time 0.005
Reading energy frame 6 time 0.006
Reading energy frame 7 time 0.007
Reading energy frame 8 time 0.008
Reading energy frame 9 time 0.009
Reading energy frame 10 time 0.010
Reading energy frame 11 time 0.011
Reading energy frame 12 time 0.012
Reading energy frame 13 time 0.013
Reading energy frame 14 time 0.014
Reading energy frame 15 time 0.015
Reading energy frame 16 time 0.016
Reading energy frame 17 time 0.017
Reading energy frame 18 time 0.018
Reading energy frame 19 time 0.019
Reading energy frame 20 time 0.020 Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32:
32: NOTE: Cycle counters unsupported or not enabled in kernel. Cannot use PME-PP balancing.
32: starting mdrun 'spc-and-methanol'
32: 20 steps, 0.0 ps.
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.143 0.143 100.0
32: (ns/day) (hour/ns)
32: Performance: 12.666 1.895
32: Opened /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001
Reading energy frame 2 time 0.002
Reading energy frame 3 time 0.003
Reading energy frame 4 time 0.004
Reading energy frame 5 time 0.005
Reading energy frame 6 time 0.006
Reading energy frame 7 time 0.007
Reading energy frame 8 time 0.008
Reading energy frame 9 time 0.009
Reading energy frame 10 time 0.010
Reading energy frame 11 time 0.011
Reading energy frame 12 time 0.012
Reading energy frame 13 time 0.013
Reading energy frame 14 time 0.014
Reading energy frame 15 time 0.015
Reading energy frame 16 time 0.016
Reading energy frame 17 time 0.017
Reading energy frame 18 time 0.018
Reading energy frame 19 time 0.019
Reading energy frame 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (545 ms)
32: [----------] 1 test from PmeTest (546 ms total)
32:
32: [----------] 3 tests from Checking/InitialConstraintsTest
32: [ RUN ] Checking/InitialConstraintsTest.Works/0
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -104474514
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 11.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]:
32: NVE simulation: will use the initial temperature of 1141.954 K for
32: determining the Verlet buffer size
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 3 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 1 steps, 0.0 ps.
32: turning H bonds into constraints...
32: turning H bonds into constraints...
32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K
32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.049 0.049 100.0
32: (ns/day) (hour/ns)
32: Performance: 3.534 6.792
32: Opened /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as double precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (122 ms)
32: [ RUN ] Checking/InitialConstraintsTest.Works/1
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -1598215179
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 11.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]:
32: NVE simulation: will use the initial temperature of 1141.954 K for
32: determining the Verlet buffer size
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 3 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 1 steps, 0.0 ps.
32: turning H bonds into constraints...
32: turning H bonds into constraints...
32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K
32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.068 0.068 100.0
32: (ns/day) (hour/ns)
32: Performance: 2.538 9.458
32: Opened /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as double precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (142 ms)
32: [ RUN ] Checking/InitialConstraintsTest.Works/2
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]:
32: Integrator method md-vv-avek is implemented primarily for validation
32: purposes; for molecular dynamics, you should probably be using md or md-vv
32:
32: Setting the LD random seed to -1723309539
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group rest is 11.00
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]:
32: NVE simulation: will use the initial temperature of 1141.954 K for
32: determining the Verlet buffer size
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2.tpr, VERSION 2018 (double precision)
32: Can not increase nstlist because an NVE ensemble is used
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 1 steps, 0.0 ps.
32: turning H bonds into constraints...
32: turning H bonds into constraints...
32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K
32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.051 0.051 100.0
32: (ns/day) (hour/ns)
32: Performance: 3.409 7.041
32: Opened /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as double precision energy file
32:
Reading energy frame 0 time 0.000
Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (126 ms)
32: [----------] 3 tests from Checking/InitialConstraintsTest (390 ms total)
32:
32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -1181377910
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0.tpr, VERSION 2018 (double precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.trr'
32:
32: trr version: GMX_trn_file (single precision)
32:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 207.732 0.116
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0 (30 ms)
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -1051344457
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1.tpr, VERSION 2018 (double precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.tng'
32:
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.002 0.002 100.0
32: (ns/day) (hour/ns)
32: Performance: 70.945 0.338
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1 (30 ms)
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -1241787003
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2.tpr, VERSION 2018 (double precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.xtc'
32:
32:
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32:
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 99.9
32: (ns/day) (hour/ns)
32: Performance: 220.431 0.109
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2 (29 ms)
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to 476895452
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3.tpr, VERSION 2018 (double precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.gro'
32:
32: Reading frames from gro file '', 6 atoms.
32:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 100.0
32: (ns/day) (hour/ns)
32: Performance: 170.255 0.141
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3 (29 ms)
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to 569646652
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4.tpr, VERSION 2018 (double precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.pdb'
32:
32: Reading frames from pdb file
Reading frame 0 time 0.000
32: WARNING: Some frames do not contain velocities.
32: Ekin, temperature and pressure are incorrect,
32: the virial will be incorrect when constraints are present.
32:
32: 't= 0.00000', 6 atoms
32:
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 100.0
32: (ns/day) (hour/ns)
32: Performance: 195.938 0.122
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4 (29 ms)
32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]:
32: For a correct single-point energy evaluation with nsteps = 0, use
32: continuation = yes to avoid constraining the input coordinates.
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to 1536417415
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 5 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 5 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5.tpr, VERSION 2018 (double precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting md rerun 'spc2', reading coordinates from input trajectory '/<<PKGBUILDDIR>>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.g96'
32:
32:
Reading frame 0 time 0.000
Reading frame 1 time 0.000
Last frame 1 time 0.000
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.001 0.001 100.0
32: (ns/day) (hour/ns)
32: Performance: 174.393 0.138
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5 (29 ms)
32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun (176 ms total)
32:
32: [----------] 3 tests from MdrunCanWrite/Trajectories
32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp, line 12]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to 375562803
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0.tpr, VERSION 2018 (double precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 6 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.057 0.057 100.0
32: (ns/day) (hour/ns)
32: Performance: 10.607 2.263
32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (132 ms)
32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp, line 12]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to 1889620314
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1.tpr, VERSION 2018 (double precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 6 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.059 0.059 100.0
32: (ns/day) (hour/ns)
32: Performance: 10.330 2.323
32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (134 ms)
32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp, line 12]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to 1776728103
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2.tpr, VERSION 2018 (double precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 6 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.063 0.063 100.0
32: (ns/day) (hour/ns)
32: Performance: 9.595 2.501
32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (184 ms)
32: [----------] 3 tests from MdrunCanWrite/Trajectories (450 ms total)
32:
32: [----------] 3 tests from MdrunCanWrite/NptTrajectories
32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -286608508
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0.tpr, VERSION 2018 (double precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 2 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.058 0.058 100.0
32: (ns/day) (hour/ns)
32: Performance: 4.459 5.382
32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (133 ms)
32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -152419614
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1.tpr, VERSION 2018 (double precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 2 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.050 0.050 100.0
32: (ns/day) (hour/ns)
32: Performance: 5.229 4.590
32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (125 ms)
32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp, line 13]:
32: /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it
32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet
32: scheme was introduced, but the group scheme was still the default. The
32: default is now the Verlet scheme, so you will observe different behaviour.
32:
32: Setting the LD random seed to -493237639
32: Generated 279 of the 1225 non-bonded parameter combinations
32: Excluding 2 bonded neighbours molecule type 'Methanol'
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Removing all charge groups because cutoff-scheme=Verlet
32: Number of degrees of freedom in T-Coupling group System is 12.00
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 2 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2.tpr, VERSION 2018 (double precision)
32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293
32:
32: No option -multi
32: Using 1 MPI thread
32: Using 1 OpenMP thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: WARNING: Using the slow plain C kernels. This should
32: not happen during routine usage on supported platforms.
32: starting mdrun 'spc-and-methanol'
32: 2 steps, 0.0 ps.
32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K
32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm
32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm
32: Note that mdrun will redetermine rlist based on the actual pair-list setup
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.058 0.058 100.0
32: (ns/day) (hour/ns)
32: Performance: 4.439 5.406
32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (133 ms)
32: [----------] 3 tests from MdrunCanWrite/NptTrajectories (392 ms total)
32:
32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput
32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to 358973639
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.tpr, VERSION 2018 (double precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting mdrun 'spc2'
32: 1 steps, 0.0 ps.
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.080 0.080 100.0
32: (ns/day) (hour/ns)
32: Performance: 2.171 11.056
32:
Reading frame 0 time 0.000
32: # Atoms 6
32:
Reading frame 1 time 0.001
Last frame 1 time 0.001
32:
32:
32: Item #frames Timestep (ps)
32: Step 2 0.001
32: Time 2 0.001
32: Lambda 0
32: Coords 2 0.001
32: Velocities 0
32: Forces 0
32: Box 2 0.001
32: Checking file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc
32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (109 ms)
32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to -1724685412
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.tpr, VERSION 2018 (double precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting mdrun 'spc2'
32: 1 steps, 0.0 ps.
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.087 0.087 100.0
32: (ns/day) (hour/ns)
32: Performance: 1.990 12.063
32:
Reading frame 0 time 0.000
32: # Atoms 6
32:
Reading frame 1 time 0.001
Last frame 1 time 0.001
32:
32:
32: Item #frames Timestep (ps)
32: Step 2 0.001
32: Time 2 0.001
32: Lambda 0
32: Coords 2 0.001
32: Velocities 0
32: Forces 0
32: Box 2 0.001
32: Checking file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc
32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (117 ms)
32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2
32:
32: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]:
32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be
32: removed in a future release when all interaction forms are supported for
32: the verlet scheme. The verlet scheme already scales better, and it is
32: compatible with GPUs and other accelerators.
32:
32:
32: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]:
32: You are using a cut-off for VdW interactions with NVE, for good energy
32: conservation use vdwtype = Shift (possibly with DispCorr)
32:
32:
32: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]:
32: You are using a cut-off for electrostatics with NVE, for good energy
32: conservation use coulombtype = PME-Switch or Reaction-Field-zero
32:
32: Setting the LD random seed to 1594383691
32: Generated 3 of the 3 non-bonded parameter combinations
32: Generating 1-4 interactions: fudge = 0.5
32: Generated 3 of the 3 1-4 parameter combinations
32: Excluding 2 bonded neighbours molecule type 'SOL'
32: Number of degrees of freedom in T-Coupling group rest is 9.00
32:
32: NOTE 4 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]:
32: You are using a plain Coulomb cut-off, which might produce artifacts.
32: You might want to consider using PME electrostatics.
32:
32:
32:
32: There were 4 notes
32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
32: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.tpr, VERSION 2018 (double precision)
32: No option -multi
32: Using 1 MPI thread
32:
32:
32: NOTE: Thread affinity was not set.
32:
32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be
32: removed in a future release when 'verlet' supports all interaction forms.
32:
32: starting mdrun 'spc2'
32: 1 steps, 0.0 ps.
32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm
32: Largest charge group radii for Coulomb: 0.084, 0.084 nm
32: This run will generate roughly 0 Mb of data
32:
32: Writing final coordinates.
32:
32: Core t (s) Wall t (s) (%)
32: Time: 0.088 0.088 100.0
32: (ns/day) (hour/ns)
32: Performance: 1.975 12.155
32:
Reading frame 0 time 0.000
32: # Atoms 3
32:
Reading frame 1 time 0.001
Last frame 1 time 0.001
32:
32:
32: Item #frames Timestep (ps)
32: Step 2 0.001
32: Time 2 0.001
32: Lambda 0
32: Coords 2 0.001
32: Velocities 0
32: Forces 0
32: Box 2 0.001
32: Checking file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc
32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (117 ms)
32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (343 ms total)
32:
32: [----------] Global test environment tear-down
32: [==========] 29 tests from 11 test cases ran. (8235 ms total)
32: [ PASSED ] 29 tests.
32/33 Test #32: MdrunTests ....................... Passed 8.28 sec
test 33
Start 33: MdrunMpiTests
33: Test command: /<<PKGBUILDDIR>>/build/basic-dp/bin/mdrun-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<<PKGBUILDDIR>>/build/basic-dp/Testing/Temporary/MdrunMpiTests.xml"
33: Test timeout computed to be: 600
33: [==========] Running 3 tests from 3 test cases.
33: [----------] Global test environment set-up.
33: [----------] 1 test from MultiSimTerminationTest
33: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts
33: [ OK ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (0 ms)
33: [----------] 1 test from MultiSimTerminationTest (0 ms total)
33:
33: [----------] 1 test from ReplicaExchangeTerminationTest
33: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts
33: [ OK ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (1 ms)
33: [----------] 1 test from ReplicaExchangeTerminationTest (1 ms total)
33:
33: [----------] 1 test from DomainDecompositionSpecialCasesTest
33: [ RUN ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks
33:
33: NOTE 1 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]:
33: For a correct single-point energy evaluation with nsteps = 0, use
33: continuation = yes to avoid constraining the input coordinates.
33:
33: Setting the LD random seed to 537834015
33: Generated 3 of the 3 non-bonded parameter combinations
33: Generating 1-4 interactions: fudge = 0.5
33: Generated 3 of the 3 1-4 parameter combinations
33: Excluding 2 bonded neighbours molecule type 'SOL'
33: Removing all charge groups because cutoff-scheme=Verlet
33: Number of degrees of freedom in T-Coupling group rest is 9.00
33:
33: NOTE 2 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]:
33: NVE simulation with an initial temperature of zero: will use a Verlet
33: buffer of 10%. Check your energy drift!
33:
33:
33: NOTE 3 [file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]:
33: You are using a plain Coulomb cut-off, which might produce artifacts.
33: You might want to consider using PME electrostatics.
33:
33:
33:
33: There were 3 notes
33: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log).
33: Reading file /<<PKGBUILDDIR>>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks.tpr, VERSION 2018 (double precision)
33: Can not increase nstlist because an NVE ensemble is used
33:
33: NOTE: disabling dynamic load balancing as cycle counters unsupported or not enabled in the operating system kernel.
33:
33: No option -multi
33: No option -multi
33: Using 2 MPI threads
33: Using 1 OpenMP thread per tMPI thread
33:
33:
33: NOTE: The number of threads is not equal to the number of (logical) cores
33: and the -pin option is set to auto: will not pin threads to cores.
33: This can lead to significant performance degradation.
33: Consider using -pin on (and -pinoffset in case you run multiple jobs).
33:
33: WARNING: Using the slow plain C kernels. This should
33: not happen during routine usage on supported platforms.
33: starting mdrun 'spc2'
33: 0 steps, 0.0 ps.
33:
33: Core t (s) Wall t (s) (%)
33: Time: 0.001 0.001 199.9
33: (ns/day) (hour/ns)
33: Performance: 143.406 0.167
33: This run will generate roughly 0 Mb of data
33: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (31 ms)
33: [----------] 1 test from DomainDecompositionSpecialCasesTest (31 ms total)
33:
33: [----------] Global test environment tear-down
33: [==========] 3 tests from 3 test cases ran. (32 ms total)
33: [ PASSED ] 3 tests.
33:
33: YOU HAVE 4 DISABLED TESTS
33:
33/33 Test #33: MdrunMpiTests .................... Passed 0.05 sec
100% tests passed, 0 tests failed out of 33
Label Time Summary:
GTest = 14.15 sec (33 tests)
IntegrationTest = 8.40 sec (3 tests)
MpiTest = 0.12 sec (3 tests)
UnitTest = 5.75 sec (30 tests)
Total Test time (real) = 14.21 sec
touch build-basic
dh_testdir
/usr/bin/make -j4 -C build/mpich
make[1]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/mpich/CMakeFiles /<<PKGBUILDDIR>>/build/mpich/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend
/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/programs /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/programs /<<PKGBUILDDIR>>/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs /<<PKGBUILDDIR>>/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color=
Scanning dependencies of target tng_io_obj
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/bwlzh.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/bwt.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/coder.c
Scanning dependencies of target mdrun_objlib
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/mdrun.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/dict.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/fixpoint.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/huffman.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/huffmem.c
cd /<<PKGBUILDDIR>>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/membed.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/lz77.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/merge_sort.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/mtf.c
cd /<<PKGBUILDDIR>>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/repl_ex.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/rle.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/tng_compress.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/vals16.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/warnmalloc.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/widemuldiv.c
cd /<<PKGBUILDDIR>>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/runner.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/xtc2.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/xtc3.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/lib/tng_io.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/lib/md5.c
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 1%] Built target mdrun_objlib
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[ 5%] Built target tng_io_obj
/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<<PKGBUILDDIR>>/build/mpich/VersionInfo.cmake -D VERSION_CMAKEIN=/<<PKGBUILDDIR>>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<<PKGBUILDDIR>>/cmake/gmxConfigureVersionInfo.cmake
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs /<<PKGBUILDDIR>>/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color=
Scanning dependencies of target libgromacs
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/bonded.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/disre.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/listed-forces.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/listed-internal.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/manage-threading.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/orires.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/pairs.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/position-restraints.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/restcbt.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinehelpcontext.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinehelpmodule.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinehelpwriter.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineinit.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinemodule.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinemodulemanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineoptionsmodule.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineparser.cpp
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cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/dlbtiming.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_box.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_constraints.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_network.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_setup.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_specatomcomm.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_topology.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_vsite.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/calculate-spline-moduli.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/ewald-utils.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/ewald.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/long-range-correction.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gather.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu.cpp
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cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/iforceprovider.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/inputrec.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/md_enums.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/observableshistory.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpformat.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpmanager.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.h:59,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.h:59,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In function 'void init_gtc_state(t_state*, int, int, int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helptopic.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpwritercontext.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/rstparser.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/boxutilities.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/mshift.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc-simd.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/rmpbc.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/seed.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tabulatednormaldistribution.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/forcetable.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp: In constructor 'gmx::CubicSplineTable::CubicSplineTable(std::initializer_list<gmx::NumericalSplineTableInput>, const std::pair<float, float>&, real)':
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
CubicSplineTable::CubicSplineTable(std::initializer_list<NumericalSplineTableInput> numericalInputList,
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef<const double>, double, const std::pair<float, float>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:210:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef<const double>, double, const std::pair<float, float>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:287:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef<const double>, gmx::ArrayRef<const double>, double, const std::pair<float, float>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
throwUnlessDerivativeIsConsistentWithFunction(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/cyclecounter.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'std::vector<double> gmx::internal::vectorSecondDerivative(gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:306:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
vectorSecondDerivative(ArrayRef<const double> f, double spacing)
^~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/wallcycle.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/walltime_accounting.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atomprop.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atoms.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp: In constructor 'gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list<gmx::NumericalSplineTableInput>, const std::pair<float, float>&, real)':
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
QuadraticSplineTable::QuadraticSplineTable(std::initializer_list<NumericalSplineTableInput> numericalInputList,
^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
std::vector<double> thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing));
^
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atomsbuilder.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/block.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/idef.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/ifunc.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/index.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/invblock.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/mtop_util.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/residuetypes.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/symtab.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/topology.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/topsort.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/alignedallocator.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/basenetwork.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/baseversion.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/binaryinformation.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/compare.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/coolstuff.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/cstringutil.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/datafilefinder.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/directoryenumerator.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/errorcodes.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/errorformat.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/exceptions.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/fatalerror.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/fileredirector.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/filestream.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/futil.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/gmxassert.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/gmxomp.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/gmxregex.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/ikeyvaluetreeerror.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/init.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/inmemoryserializer.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/int64_to_int.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/keyvaluetree.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/keyvaluetreeserializer.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/keyvaluetreetransform.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/logger.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/loggerbuilder.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/messagestringcollector.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/niceheader.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/path.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/pleasecite.cpp
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cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/stringstream.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/stringutil.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/sysinfo.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/textreader.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/textwriter.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/txtdump.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/variant.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/checkpoint.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/confio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/enxio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/espio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/filetypes.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/g96io.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/gmx_internal_xdr.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/gmxfio-xdr.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/gmxfio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/groio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/libxdrf.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/matio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/md5.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/mtxio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/oenv.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/pdbio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/readinp.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/timecontrol.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tngio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tpxio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/trrio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/trxio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/warninp.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/writeps.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xdrd.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xtcio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xvgr.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/swap/swapcoords.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/essentialdynamics/edsam.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pull.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pull_rotation.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pullutil.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/awh.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.h:53,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector<gmx::DimParams>&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector<gmx::GridAxis>&, int)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp: In member function 'void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:314:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void Bias::updateForceCorrelationGrid(gmx::ArrayRef<const double> probWeightNeighbor,
^~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:335:45: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:68:0:
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp: In member function 'gmx::ArrayRef<const double> gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const gmx_multisim_t*, double, gmx_int64_t, gmx_int64_t, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:141:39: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
updateForceCorrelationGrid(probWeightNeighbor, t);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tempForce_, biasForce_);
~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:169:19: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
potential =
~~~~~~~~~~^
state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex);
^
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biassharing.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/awh.h:69,
from /<<PKGBUILDDIR>>/src/gromacs/awh/awh.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector<int, std::allocator<int> >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator<gmx::BiasCoupledToSystem>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::BiasCoupledToSystem>::iterator {aka __gnu_cxx::__normal_iterator<gmx::BiasCoupledToSystem*, std::vector<gmx::BiasCoupledToSystem> >}' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biaswriter.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx::AwhParams&, const string&, pull_t*)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BiasCoupledToSystem*, std::vector<gmx::BiasCoupledToSystem> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef<gmx::PointState>, const gmx::BiasParams&)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:244:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::PointState>' changed in GCC 7.1
void updateTargetDistribution(gmx::ArrayRef<PointState> pointState,
^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector<gmx::DimParams>&, const gmx::Grid&, int, gmx::ArrayRef<double>) const':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:373:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double BiasState::calcUmbrellaForceAndPotential(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::calcConvolvedForce(const std::vector<gmx::DimParams>&, const gmx::Grid&, gmx::ArrayRef<const double>, gmx::ArrayRef<double>, gmx::ArrayRef<double>) const':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::calcConvolvedForce(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationgrid.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::moveUmbrella(const std::vector<gmx::DimParams>&, const gmx::Grid&, gmx::ArrayRef<const double>, gmx::ArrayRef<double>, gmx_int64_t, gmx_int64_t, int)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
double BiasState::moveUmbrella(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:433:40: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:433:40: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef<const double>)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1174:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::sampleProbabilityWeights(const Grid &grid,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1229:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::sampleCoordAndPmf(const Grid &grid,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp: In member function 'void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef<const double>, gmx_int64_t, gmx_int64_t, int)':
/<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
CoordState::sampleUmbrellaGridpoint(const Grid &grid,
^~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationhistory.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector<gmx::DimParams>&, const gmx::Grid&, const gmx::BiasParams&, const gmx_multisim_t*, double, gmx_int64_t, FILE*, std::vector<int>*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1017:126: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog);
^
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1017:126: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/grid.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp: In member function 'void gmx::CorrelationTensor::addData(double, gmx::ArrayRef<const double>, bool, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void CorrelationTensor::addData(double weight,
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::CorrelationBlockData}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator<gmx::CorrelationBlockData>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::CorrelationBlockData>::iterator {aka __gnu_cxx::__normal_iterator<gmx::CorrelationBlockData*, std::vector<gmx::CorrelationBlockData> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::CorrelationTensor::CorrelationTensor(int, int, double)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::CorrelationBlockData*, std::vector<gmx::CorrelationBlockData> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/pointstate.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/read-params.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/support.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef<double>, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms,
^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector<gmx::PointState>&, gmx::ArrayRef<double>, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double HistogramSize::newHistogramSize(const BiasParams ¶ms,
^~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/imd/imd.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/dimparams.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.h:60,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::GridAxis}; _Tp = gmx::GridAxis; _Alloc = std::allocator<gmx::GridAxis>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::GridAxis>::iterator {aka __gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function 'void gmx::mapGridToDataGrid(std::vector<int>*, const double* const*, int, const string&, const gmx::Grid&, const string&)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::Grid::Grid(const std::vector<gmx::DimParams>&, const gmx::AwhDimParams*)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/imd/imdsocket.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/chargegroup.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/conformation-utilities.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/network.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nrnb.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_generic.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nonbonded.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/broadcaststructs.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/calc_verletbuf.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/calcmu.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/calcvir.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/clincs.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/compute_io.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/constr.cpp
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cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/gmx_omp_nthreads.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/groupcoord.cpp
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cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/md_support.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdatoms.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdebin.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdebin_bar.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdsetup.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_atomdata.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_grid.cpp
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cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_tuning.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/ns.cpp
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cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_gaussian.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_mopac.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_orca.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qmmm.cpp
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cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shakef.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/shakef.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/sighandler.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/simulationsignal.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/splitter.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/stat.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tgroup.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/vcm.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/wall.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/wnblist.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/applied-forces/electricfield.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/calcgrid.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/fft.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/fft5d.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/parallel_3dfft.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/fft_fftw3.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/hostallocator.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/gpu_utils.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/cpuinfo.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/detecthardware.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/gpu_hw_info.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/hardwaretopology.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/printhardware.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/identifyavx512fmaunits.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/handlerestart.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/mdmodules.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/threadaffinity.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/abstractoption.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/abstractsection.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/behaviorcollection.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/filenameoption.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/filenameoptionmanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/options.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsassigner.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsection.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsvisitor.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/timeunitmanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/treesupport.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/decidegpuusage.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/findallgputasks.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.h:50,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.h:50,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp:44:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate<double>::ValueList*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/reportgpuusage.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/resourcedivision.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/taskassignment.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/usergpuids.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/trajectory/trajectoryframe.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/errhandler.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/tmpi_malloc.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/atomic.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/lock.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/pthreads.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/system_error.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/lmfit/lmmin.cpp.o -c /<<PKGBUILDDIR>>/src/external/lmfit/lmmin.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o -c /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/baseversion-gen.c
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs && /usr/bin/cmake -P CMakeFiles/libgromacs.dir/cmake_clean_target.cmake
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cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/bwlzh.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/bwt.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/coder.c
Scanning dependencies of target mdrun_objlib
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich-dp'
/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/mpich-dp'
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/dict.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/fixpoint.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/huffman.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/mdrun.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/membed.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/huffmem.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/lz77.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/merge_sort.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/mtf.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/repl_ex.cpp
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp: In function 'double gmx::do_md(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)':
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1234:21: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, ir, step, nrnb, wcycle, top, groups,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->box, state->x, &state->hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
f, force_vir, mdatoms, enerd, fcd,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->lambda, graph,
~~~~~~~~~~~~~~~~~~~~~
fr, vsite, mu_tot, t, ed, bBornRadii,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bNS ? GMX_FORCE_NS : 0) | force_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddOpenBalanceRegion, ddCloseBalanceRegion);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1234:21: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1234:21: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1266:26: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
update_coords(fplog, step, ir, mdatoms, state, f, fcd,
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ekind, M, upd, etrtVELOCITY1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cr, constr);
~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1273:35: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
update_constraints(fplog, step, nullptr, ir, mdatoms,
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state, fr->bMolPBC, graph, f,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&top->idef, shake_vir,
~~~~~~~~~~~~~~~~~~~~~~
cr, nrnb, wcycle, upd, constr,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TRUE, bCalcVir);
~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1393:25: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
sum_dhdl(enerd, state->lambda, ir->fepvals);
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1418:33: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ir, state, state_global, observablesHistory,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top_global, fr,
~~~~~~~~~~~~~~~
outf, mdebin, ekind, f,
~~~~~~~~~~~~~~~~~~~~~~~
&nchkpt,
~~~~~~~~
bCPT, bRerunMD, bLastStep,
~~~~~~~~~~~~~~~~~~~~~~~~~~
mdrunOptions.writeConfout,
~~~~~~~~~~~~~~~~~~~~~~~~~~
bSumEkinhOld);
~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1528:35: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
update_constraints(fplog, step, nullptr, ir, mdatoms,
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state, fr->bMolPBC, graph, f,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&top->idef, tmp_vir,
~~~~~~~~~~~~~~~~~~~~
cr, nrnb, wcycle, upd, constr,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TRUE, bCalcVir);
~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1568:30: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
update_coords(fplog, step, ir, mdatoms, state, f, fcd,
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ekind, M, upd, etrtVELOCITY2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cr, constr);
~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1589:26: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
update_coords(fplog, step, ir, mdatoms, state, f, fcd,
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ekind, M, upd, etrtPOSITION, cr, constr);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1593:31: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
update_constraints(fplog, step, &dvdl_constr, ir, mdatoms, state,
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fr->bMolPBC, graph, f,
~~~~~~~~~~~~~~~~~~~~~~
&top->idef, shake_vir,
~~~~~~~~~~~~~~~~~~~~~~
cr, nrnb, wcycle, upd, constr,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FALSE, bCalcVir);
~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1614:30: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
update_coords(fplog, step, ir, mdatoms, state, f, fcd,
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ekind, M, upd, etrtPOSITION, cr, constr);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1623:35: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
update_constraints(fplog, step, nullptr, ir, mdatoms,
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state, fr->bMolPBC, graph, f,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&top->idef, tmp_vir,
~~~~~~~~~~~~~~~~~~~~
cr, nrnb, wcycle, upd, nullptr,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FALSE, bCalcVir);
~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/programs/mdrun/md.cpp:1728:21: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
sum_dhdl(enerd, state->lambda, ir->fepvals);
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/rle.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/tng_compress.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/vals16.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun/runner.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/warnmalloc.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/widemuldiv.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/xtc2.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/compression/xtc3.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/lib/tng_io.c
/<<PKGBUILDDIR>>/src/programs/mdrun/runner.cpp: In member function 'int gmx::Mdrunner::mdrunner()':
/<<PKGBUILDDIR>>/src/programs/mdrun/runner.cpp:1214:38: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
constructVsitesGlobal(*mtop, globalState->x);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<<PKGBUILDDIR>>/src/external/tng_io/src/lib/md5.c
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich-dp'
[ 1%] Built target mdrun_objlib
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich-dp'
[ 5%] Built target tng_io_obj
/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/mpich-dp'
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<<PKGBUILDDIR>>/build/mpich-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/<<PKGBUILDDIR>>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<<PKGBUILDDIR>>/cmake/gmxConfigureVersionInfo.cmake
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c
cd /<<PKGBUILDDIR>>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs /<<PKGBUILDDIR>>/build/mpich-dp /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color=
Scanning dependencies of target libgromacs
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/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/mpich-dp'
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/bonded.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/disre.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/listed-forces.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/listed-internal.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/manage-threading.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/orires.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/pairs.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/position-restraints.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/restcbt.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinehelpcontext.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinehelpmodule.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinehelpwriter.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineinit.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinemodule.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlinemodulemanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineoptionsmodule.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineparser.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/cmdlineprogramcontext.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/filenm.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/pargs.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/shellcompletions.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/viewit.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/dlbtiming.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_box.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_constraints.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_network.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_setup.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_specatomcomm.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_topology.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/domdec/domdec_vsite.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/calculate-spline-moduli.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/ewald-utils.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/ewald.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/long-range-correction.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gather.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-grid.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = double*; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-load-balancing.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-gpu-internal.cpp:47:
/usr/include/c++/7/bits/stl_vector.h: In function 'void pme_gpu_copy_common_data_from(const gmx_pme_t*)':
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp: In function 'void dd_collect_vec(gmx_domdec_t*, const t_state*, gmx::ArrayRef<const gmx::BasicVector<double> >, gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp:1277:6: note: parameter passing for argument of type 'gmx::ArrayRef<const gmx::BasicVector<double> >' changed in GCC 7.1
void dd_collect_vec(gmx_domdec_t *dd,
^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp:1277:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp: In function 'void dd_collect_state(gmx_domdec_t*, const t_state*, t_state*)':
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp:1339:23: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(dd, state_local, state_local->x, globalXRef);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp:1344:23: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(dd, state_local, state_local->v, globalVRef);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/domdec/domdec.cpp:1349:23: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(dd, state_local, state_local->cg_p, globalCgpRef);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-only.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-pp.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-redistribute.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-solve.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-spline-work.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme-spread.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/pme.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/linearalgebra/eigensolver.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/linearalgebra/gmx_arpack.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/linearalgebra/matrix.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/linearalgebra/nrjac.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/linearalgebra/sparsematrix.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/3dtransforms.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/do_fit.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/functions.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/invertmatrix.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/units.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/utilities.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/veccompare.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/vecdump.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/df_history.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/iforceprovider.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/inputrec.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/md_enums.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/observableshistory.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpformat.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpmanager.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp: In function 'real (* makeRvecArray(gmx::ArrayRef<const gmx::BasicVector<double> >, unsigned int))[3]':
/<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp:209:7: note: parameter passing for argument of type 'gmx::ArrayRef<const gmx::BasicVector<double> >' changed in GCC 7.1
rvec *makeRvecArray(gmx::ArrayRef<const gmx::RVec> v,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.h:59,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.h:59,
from /<<PKGBUILDDIR>>/src/gromacs/mdtypes/state.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In function 'void init_gtc_state(t_state*, int, int, int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helptopic.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/helpwritercontext.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/rstparser.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/boxutilities.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/mshift.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc-simd.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pbcutil/rmpbc.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/seed.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tabulatednormaldistribution.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/forcetable.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_box(int, const real (*)[3], gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp:1416:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void put_atoms_in_box(int ePBC, const matrix box, gmx::ArrayRef<gmx::RVec> x)
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_triclinic_unitcell(int, const real (*)[3], gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp:1476:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void put_atoms_in_triclinic_unitcell(int ecenter, const matrix box,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_compact_unitcell(int, int, const real (*)[3], gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/pbcutil/pbc.cpp:1534:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void put_atoms_in_compact_unitcell(int ePBC, int ecenter, const matrix box,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp: In constructor 'gmx::CubicSplineTable::CubicSplineTable(std::initializer_list<gmx::NumericalSplineTableInput>, const std::pair<double, double>&, real)':
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
CubicSplineTable::CubicSplineTable(std::initializer_list<NumericalSplineTableInput> numericalInputList,
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/cyclecounter.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/wallcycle.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp: In constructor 'gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list<gmx::NumericalSplineTableInput>, const std::pair<double, double>&, real)':
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
QuadraticSplineTable::QuadraticSplineTable(std::initializer_list<NumericalSplineTableInput> numericalInputList,
^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
std::vector<double> thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing));
^
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/timing/walltime_accounting.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef<const double>, double, const std::pair<double, double>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:210:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef<const double>, double, const std::pair<double, double>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:287:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atomprop.cpp
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef<const double>, gmx::ArrayRef<const double>, double, const std::pair<double, double>&)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
throwUnlessDerivativeIsConsistentWithFunction(ArrayRef<const double> function,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp: In function 'std::vector<double> gmx::internal::vectorSecondDerivative(gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/tables/splineutil.cpp:306:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
vectorSecondDerivative(ArrayRef<const double> f, double spacing)
^~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atoms.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/atomsbuilder.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/block.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/idef.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/ifunc.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/index.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/invblock.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/mtop_util.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/residuetypes.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/symtab.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/topology.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/topology/topsort.cpp
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cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/checkpoint.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/confio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/enxio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/espio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/filetypes.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/g96io.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/gmx_internal_xdr.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/gmxfio-xdr.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/gmxfio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/groio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/libxdrf.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/matio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/md5.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/mtxio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/oenv.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/pdbio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/readinp.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/timecontrol.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tngio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tpxio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/trrio.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/fileio/tngio.cpp:46:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/fileio/tngio.cpp:46:
/usr/include/c++/7/bits/stl_vector.h: In function 'void gmx_tng_add_mtop(gmx_tng_trajectory_t, const gmx_mtop_t*)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/trxio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/warninp.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/writeps.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xdrd.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xtcio.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/xvgr.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/swap/swapcoords.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/essentialdynamics/edsam.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pull.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pull_rotation.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/pullutil.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/awh.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.h:53,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasparams.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector<gmx::DimParams>&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector<gmx::GridAxis>&, int)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp: In member function 'void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:314:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void Bias::updateForceCorrelationGrid(gmx::ArrayRef<const double> probWeightNeighbor,
^~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:335:45: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:68:0:
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biassharing.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp: In member function 'gmx::ArrayRef<const double> gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const gmx_multisim_t*, double, gmx_int64_t, gmx_int64_t, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:141:39: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
updateForceCorrelationGrid(probWeightNeighbor, t);
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tempForce_, biasForce_);
~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:159:34: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:169:19: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
potential =
~~~~~~~~~~^
state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex);
^
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/bias.cpp:179:135: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/biaswriter.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/awh.h:69,
from /<<PKGBUILDDIR>>/src/gromacs/awh/awh.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector<int, std::allocator<int> >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator<gmx::BiasCoupledToSystem>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::BiasCoupledToSystem>::iterator {aka __gnu_cxx::__normal_iterator<gmx::BiasCoupledToSystem*, std::vector<gmx::BiasCoupledToSystem> >}' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx::AwhParams&, const string&, pull_t*)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BiasCoupledToSystem*, std::vector<gmx::BiasCoupledToSystem> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef<gmx::PointState>, const gmx::BiasParams&)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:244:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::PointState>' changed in GCC 7.1
void updateTargetDistribution(gmx::ArrayRef<PointState> pointState,
^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector<gmx::DimParams>&, const gmx::Grid&, int, gmx::ArrayRef<double>) const':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:373:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double BiasState::calcUmbrellaForceAndPotential(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::calcConvolvedForce(const std::vector<gmx::DimParams>&, const gmx::Grid&, gmx::ArrayRef<const double>, gmx::ArrayRef<double>, gmx::ArrayRef<double>) const':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::calcConvolvedForce(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:393:6: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::moveUmbrella(const std::vector<gmx::DimParams>&, const gmx::Grid&, gmx::ArrayRef<const double>, gmx::ArrayRef<double>, gmx_int64_t, gmx_int64_t, int)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
double BiasState::moveUmbrella(const std::vector<DimParams> &dimParams,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:433:40: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:433:40: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationgrid.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationhistory.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef<const double>)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1174:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::sampleProbabilityWeights(const Grid &grid,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef<const double>, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1229:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void BiasState::sampleCoordAndPmf(const Grid &grid,
^~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp: In member function 'void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef<const double>, gmx_int64_t, gmx_int64_t, int)':
/<<PKGBUILDDIR>>/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
CoordState::sampleUmbrellaGridpoint(const Grid &grid,
^~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector<gmx::DimParams>&, const gmx::Grid&, const gmx::BiasParams&, const gmx_multisim_t*, double, gmx_int64_t, FILE*, std::vector<int>*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1017:126: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog);
^
/<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.cpp:1017:126: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp: In member function 'void gmx::CorrelationTensor::addData(double, gmx::ArrayRef<const double>, bool, double)':
/<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void CorrelationTensor::addData(double weight,
^~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/grid.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/awh/correlationtensor.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::CorrelationBlockData}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator<gmx::CorrelationBlockData>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::CorrelationBlockData>::iterator {aka __gnu_cxx::__normal_iterator<gmx::CorrelationBlockData*, std::vector<gmx::CorrelationBlockData> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::CorrelationTensor::CorrelationTensor(int, int, double)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::CorrelationBlockData*, std::vector<gmx::CorrelationBlockData> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/pointstate.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/read-params.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/support.cpp
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef<double>, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms,
^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector<gmx::PointState>&, gmx::ArrayRef<double>, FILE*)':
/<<PKGBUILDDIR>>/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
double HistogramSize::newHistogramSize(const BiasParams ¶ms,
^~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/imd/imd.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/dimparams.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.h:60,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.cpp:47:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::GridAxis}; _Tp = gmx::GridAxis; _Alloc = std::allocator<gmx::GridAxis>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::GridAxis>::iterator {aka __gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function 'void gmx::mapGridToDataGrid(std::vector<int>*, const double* const*, int, const string&, const gmx::Grid&, const string&)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::Grid::Grid(const std::vector<gmx::DimParams>&, const gmx::AwhDimParams*)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::GridAxis*, std::vector<gmx::GridAxis> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/imd/imdsocket.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/chargegroup.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/conformation-utilities.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/network.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nrnb.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_generic.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nonbonded.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /<<PKGBUILDDIR>>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/broadcaststructs.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/calc_verletbuf.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/calcmu.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/calcmu.cpp: In function 'void calc_mu(int, int, gmx::ArrayRef<gmx::BasicVector<double> >, real*, real*, int, double*, double*)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/calcmu.cpp:50:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void calc_mu(int start, int homenr, gmx::ArrayRef<gmx::RVec> x, real q[], real qB[],
^~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/calcvir.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/clincs.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/compute_io.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/constr.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/coupling.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/csettle.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/ebin.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/expanded.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/force.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/forcerec.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/force.cpp: In function 'void sum_dhdl(gmx_enerdata_t*, gmx::ArrayRef<const double>, t_lambda*)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/force.cpp:724:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
void sum_dhdl(gmx_enerdata_t *enerd, gmx::ArrayRef<const real> lambda, t_lambda *fepvals)
^~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/force.cpp:724:6: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/genborn.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/genborn_allvsall.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/gmx_omp_nthreads.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/groupcoord.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/main.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/md_support.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdatoms.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdebin.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdebin_bar.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp: In function 'void mdoutf_write_to_trajectory_files(FILE*, t_commrec*, gmx_mdoutf_t, int, gmx_mtop_t*, gmx_int64_t, double, t_state*, t_state*, ObservablesHistory*, gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void mdoutf_write_to_trajectory_files(FILE *fplog, t_commrec *cr,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp:269:31: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(cr->dd, state_local, state_local->x, globalXRef);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp:274:31: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(cr->dd, state_local, state_local->v, globalVRef);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/mdoutf.cpp:280:27: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
dd_collect_vec(cr->dd, state_local, f_local, gmx::arrayRefFromArray(reinterpret_cast<gmx::RVec *>(f_global), f_local.size()));
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/mdsetup.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_atomdata.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_grid.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'void write_em_traj(FILE*, t_commrec*, gmx_mdoutf_t, gmx_bool, gmx_bool, const char*, gmx_mtop_t*, t_inputrec*, gmx_int64_t, em_state_t*, t_state*, ObservablesHistory*)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top_global, step, (double)step,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&state->s, state_global, observablesHistory,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->f);
~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'void evaluate_energy(FILE*, t_commrec*, gmx_mtop_t*, em_state_t*, gmx_localtop_t*, t_inputrec*, t_nrnb*, gmx_wallcycle_t, gmx_global_stat_t, gmx_vsite_t*, gmx_constr_t, t_fcdata*, t_graph*, gmx::MDAtoms*, t_forcerec*, real*, gmx_enerdata_t*, real (*)[3], real (*)[3], gmx_int64_t, gmx_bool)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, inputrec,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
count, nrnb, wcycle, top, &top_global->groups,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->s.box, ems->s.x, &ems->s.hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->f, force_vir, mdAtoms->mdatoms(), enerd, fcd,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->s.lambda, graph, fr, vsite, mu_tot, t, nullptr, TRUE,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bNS ? GMX_FORCE_NS : 0),
~~~~~~~~~~~~~~~~~~~~~~~~~
DOMAINDECOMP(cr) ?
~~~~~~~~~~~~~~~~~~
DdOpenBalanceRegionBeforeForceComputation::yes :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdOpenBalanceRegionBeforeForceComputation::no,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DOMAINDECOMP(cr) ?
~~~~~~~~~~~~~~~~~~
DdCloseBalanceRegionAfterForceComputation::yes :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdCloseBalanceRegionAfterForceComputation::no);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:837:13: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals);
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'void evaluate_energy(FILE*, t_commrec*, gmx_mtop_t*, em_state_t*, gmx_localtop_t*, t_inputrec*, t_nrnb*, gmx_wallcycle_t, gmx_global_stat_t, gmx_vsite_t*, gmx_constr_t, t_fcdata*, t_graph*, gmx::MDAtoms*, t_forcerec*, real*, gmx_enerdata_t*, real (*)[3], real (*)[3], gmx_int64_t, gmx_bool)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, inputrec,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
count, nrnb, wcycle, top, &top_global->groups,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->s.box, ems->s.x, &ems->s.hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->f, force_vir, mdAtoms->mdatoms(), enerd, fcd,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ems->s.lambda, graph, fr, vsite, mu_tot, t, nullptr, TRUE,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bNS ? GMX_FORCE_NS : 0),
~~~~~~~~~~~~~~~~~~~~~~~~~
DOMAINDECOMP(cr) ?
~~~~~~~~~~~~~~~~~~
DdOpenBalanceRegionBeforeForceComputation::yes :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdOpenBalanceRegionBeforeForceComputation::no,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DOMAINDECOMP(cr) ?
~~~~~~~~~~~~~~~~~~
DdCloseBalanceRegionAfterForceComputation::yes :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdCloseBalanceRegionAfterForceComputation::no);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:768:13: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:837:13: note: parameter passing for argument of type 'gmx::ArrayRef<const double>' changed in GCC 7.1
sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals);
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'void init_em(FILE*, const char*, t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const MdrunOptions&, t_state*, gmx_mtop_t*, em_state_t*, gmx_localtop_t**, t_nrnb*, real*, t_forcerec*, gmx_enerdata_t**, t_graph**, gmx::MDAtoms*, gmx_global_stat**, gmx_vsite_t*, gmx_constr_t, gmx_shellfc_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, gmx_wallcycle_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:350:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
initialize_lambdas(fplog, ir, &(state_global->fep_state), state_global->lambda, nullptr);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:350:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_search.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'double gmx::do_lbfgs(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:1872:41: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top_global, step, (real)step, &ems.s, state_global, observablesHistory, ems.f);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nbnxn_tuning.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/ns.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'double gmx::do_cg(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top_global, step, (double)step,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&state->s, state_global, observablesHistory,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->f);
~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp: In function 'double gmx::do_steep(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top_global, step, (double)step,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&state->s, state_global, observablesHistory,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->f);
~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/nsgrid.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/perf_est.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_gamess.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_gaussian.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_mopac.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qm_orca.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/qmmm.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/rbin.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/rf_util.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shakef.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/shakef.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/sighandler.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/simulationsignal.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/splitter.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp: In function 'void relax_shell_flexcon(FILE*, t_commrec*, gmx_bool, gmx_int64_t, t_inputrec*, gmx_bool, int, gmx_localtop_t*, gmx_constr_t, gmx_enerdata_t*, t_fcdata*, t_state*, gmx::PaddedRVecVector*, real (*)[3], t_mdatoms*, t_nrnb*, gmx_wallcycle_t, t_graph*, gmx_groups_t*, gmx_shellfc_t*, t_forcerec*, gmx_bool, double, real*, gmx_vsite_t*, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, inputrec, mdstep, nrnb, wcycle, top, groups,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->box, state->x, &state->hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
force[Min], force_vir, md, enerd, fcd,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state->lambda, graph,
~~~~~~~~~~~~~~~~~~~~~
fr, vsite, mu_tot, t, nullptr, bBornRadii,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bDoNS ? GMX_FORCE_NS : 0) | force_flags,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddOpenBalanceRegion, ddCloseBalanceRegion);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, inputrec, 1, nrnb, wcycle,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
top, groups, state->box, pos[Try], &state->hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
force[Try], force_vir,
~~~~~~~~~~~~~~~~~~~~~~
md, enerd, fcd, state->lambda, graph,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fr, vsite, mu_tot, t, nullptr, bBornRadii,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
force_flags,
~~~~~~~~~~~~
ddOpenBalanceRegion, ddCloseBalanceRegion);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/stat.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tgroup.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp: In function 'void do_force_cutsVERLET(FILE*, t_commrec*, t_inputrec*, gmx_int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, gmx_groups_t*, real (*)[3], gmx::PaddedArrayRef<gmx::BasicVector<double> >, history_t*, gmx::PaddedArrayRef<gmx::BasicVector<double> >, real (*)[3], t_mdatoms*, gmx_enerdata_t*, t_fcdata*, real*, t_graph*, t_forcerec*, interaction_const_t*, gmx_vsite_t*, real*, double, gmx_edsam_t, gmx_bool, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:1042:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
static void do_force_cutsVERLET(FILE *fplog, t_commrec *cr,
^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:1042:13: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp: In function 'void do_force(FILE*, t_commrec*, t_inputrec*, gmx_int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, gmx_groups_t*, real (*)[3], gmx::PaddedArrayRef<gmx::BasicVector<double> >, history_t*, gmx::PaddedArrayRef<gmx::BasicVector<double> >, real (*)[3], t_mdatoms*, gmx_enerdata_t*, t_fcdata*, gmx::ArrayRef<double>, t_graph*, t_forcerec*, gmx_vsite_t*, real*, double, gmx_edsam_t, gmx_bool, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
void do_force(FILE *fplog, t_commrec *cr,
^~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2120:32: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force_cutsVERLET(fplog, cr, inputrec,
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
step, nrnb, wcycle,
~~~~~~~~~~~~~~~~~~~
top,
~~~~
groups,
~~~~~~~
box, x, hist,
~~~~~~~~~~~~~
force, vir_force,
~~~~~~~~~~~~~~~~~
mdatoms,
~~~~~~~~
enerd, fcd,
~~~~~~~~~~~
lambda.data(), graph,
~~~~~~~~~~~~~~~~~~~~~
fr, fr->ic,
~~~~~~~~~~~
vsite, mu_tot,
~~~~~~~~~~~~~~
t, ed,
~~~~~~
bBornRadii,
~~~~~~~~~~~
flags,
~~~~~~
ddOpenBalanceRegion,
~~~~~~~~~~~~~~~~~~~~
ddCloseBalanceRegion);
~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2120:32: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp: In function 'void put_atoms_in_box_omp(int, const real (*)[3], gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2684:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void put_atoms_in_box_omp(int ePBC, const matrix box, gmx::ArrayRef<gmx::RVec> x)
^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp: In function 'void initialize_lambdas(FILE*, t_inputrec*, int*, gmx::ArrayRef<double>, double*)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2834:13: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
extern void initialize_lambdas(FILE *fplog, t_inputrec *ir, int *fep_state, gmx::ArrayRef<real> lambda, double *lam0)
^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2834:13: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp: In function 'void init_md(FILE*, t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const gmx_output_env_t*, const MdrunOptions&, double*, double*, t_state*, double*, t_nrnb*, gmx_mtop_t*, gmx_update_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, real (*)[3], real (*)[3], real*, gmx_bool*, t_vcm**, gmx_wallcycle_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2931:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
initialize_lambdas(fplog, ir, &globalState->fep_state, globalState->lambda, lam0);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2931:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2937:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
initialize_lambdas(fplog, ir, &tmpFepState, tmpLambda, lam0);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/sim_util.cpp:2937:27: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp: In function 'void do_md_trajectory_writing(FILE*, t_commrec*, int, const t_filenm*, gmx_int64_t, gmx_int64_t, double, t_inputrec*, t_state*, t_state*, ObservablesHistory*, gmx_mtop_t*, t_forcerec*, gmx_mdoutf_t, t_mdebin*, gmx_ekindata_t*, gmx::ArrayRef<gmx::BasicVector<double> >, int*, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp:55:1: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
do_md_trajectory_writing(FILE *fplog,
^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp:148:41: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, top_global,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
step, t, state, state_global, observablesHistory, f);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/trajectory_writing.cpp:148:41: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/vcm.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp: In function 'double gmx::do_tpi(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp:662:21: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
do_force(fplog, cr, inputrec,
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
step, nrnb, wcycle, top, &top_global->groups,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state_global->box, state_global->x, &state_global->hist,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
f, force_vir, mdatoms, enerd, fcd,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
state_global->lambda,
~~~~~~~~~~~~~~~~~~~~~
nullptr, fr, nullptr, mu_tot, t, nullptr, FALSE,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GMX_FORCE_NONBONDED | GMX_FORCE_ENERGY |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bNS ? GMX_FORCE_DYNAMICBOX | GMX_FORCE_NS : 0) |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(bStateChanged ? GMX_FORCE_STATECHANGED : 0),
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdOpenBalanceRegionBeforeForceComputation::no,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DdCloseBalanceRegionAfterForceComputation::no);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp:662:21: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/tpi.cpp:662:21: note: parameter passing for argument of type 'gmx::ArrayRef<double>' changed in GCC 7.1
/<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp: In function 'void update_constraints(FILE*, gmx_int64_t, real*, t_inputrec*, t_mdatoms*, t_state*, gmx_bool, t_graph*, gmx::PaddedArrayRef<gmx::BasicVector<double> >, t_idef*, real (*)[3], t_commrec*, t_nrnb*, gmx_wallcycle_t, gmx_update_t*, gmx_constr_t, gmx_bool, gmx_bool)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp:1544:6: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
void update_constraints(FILE *fplog,
^~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/wall.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp: In function 'void update_coords(FILE*, gmx_int64_t, t_inputrec*, t_mdatoms*, t_state*, gmx::PaddedArrayRef<gmx::BasicVector<double> >, t_fcdata*, gmx_ekindata_t*, real (*)[3], gmx_update_t*, int, t_commrec*, gmx_constr_t)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/update.cpp:1878:6: note: parameter passing for argument of type 'gmx::PaddedArrayRef<gmx::BasicVector<double> > {aka gmx::ArrayRef<gmx::BasicVector<double> >}' changed in GCC 7.1
void update_coords(FILE *fplog,
^~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/wnblist.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/applied-forces/electricfield.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/calcgrid.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/fft.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/fft5d.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/parallel_3dfft.cpp
/<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp: In function 'void constructVsitesGlobal(const gmx_mtop_t&, gmx::ArrayRef<gmx::BasicVector<double> >)':
/<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp:765:6: note: parameter passing for argument of type 'gmx::ArrayRef<gmx::BasicVector<double> >' changed in GCC 7.1
void constructVsitesGlobal(const gmx_mtop_t &mtop,
^~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.h:43,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp:39:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector<double>; _Alloc = std::allocator<gmx::BasicVector<double> >]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<gmx::BasicVector<double> >::iterator {aka __gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/fft_fftw3.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/utility/arrayref.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.h:43,
from /<<PKGBUILDDIR>>/src/gromacs/mdlib/vsite.cpp:39:
/usr/include/c++/7/bits/stl_vector.h: In function '_Z25split_vsites_over_threadsPK7t_ilistPK9t_iparamsPK9t_mdatomsP11gmx_vsite_t._omp_fn.3':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::BasicVector<double>*, std::vector<gmx::BasicVector<double> > >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/hostallocator.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/gpu_utils.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/cpuinfo.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/detecthardware.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/gpu_hw_info.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/hardwaretopology.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/printhardware.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/identifyavx512fmaunits.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/handlerestart.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/mdmodules.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/threadaffinity.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/abstractoption.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/abstractsection.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/behaviorcollection.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/filenameoption.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/filenameoptionmanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/options.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsassigner.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsection.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/optionsvisitor.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/timeunitmanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/treesupport.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/decidegpuusage.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/findallgputasks.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/reportgpuusage.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.h:50,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp:44:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.h:50,
from /<<PKGBUILDDIR>>/src/gromacs/options/basicoptions.cpp:44:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate<double>::ValueList*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/resourcedivision.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/taskassignment.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/usergpuids.cpp
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cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/errhandler.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/tmpi_malloc.c
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/atomic.c
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cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o -c /<<PKGBUILDDIR>>/src/external/thread_mpi/src/system_error.cpp
cd /<<PKGBUILDDIR>>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/external/tng_io/include -I/<<PKGBUILDDIR>>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/lmfit/lmmin.cpp.o -c /<<PKGBUILDDIR>>/src/external/lmfit/lmmin.cpp
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CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o CMakeFiles/libgromacs.dir/options/options.cpp.o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o 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cd /<<PKGBUILDDIR>>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/build/mpich-dp/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /<<PKGBUILDDIR>>/src/programs/mdrun_main.cpp
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cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/cmdlinetest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/conftest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/filematchers.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/interactivetest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/loggertest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/mpi-printer.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/mpitest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/refdata.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/refdata-xml.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/stdiohelper.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/stringtest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testasserts.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testfilemanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testfileredirector.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testinit.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/testoptions.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/textblockmatchers.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/xvgtest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<<PKGBUILDDIR>>/src/external/tinyxml2/tinyxml2.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/compat/tests/make_unique.cpp
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/mpitest.cpp
Scanning dependencies of target testutils-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build
Scanning dependencies of target mdlib-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/interactivetest.cpp
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/calc_verletbuf.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/external/lmfit -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/settle.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 84%] Built target testutils-mpi-test
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/refdata_tests.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 84%] Built target compat-test
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/testasserts_tests.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/tests/xvgtest_tests.cpp
/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/applied-forces/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/applied-forces/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color=
Scanning dependencies of target applied-forces-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/applied-forces/tests/electricfield.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/testutils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -isystem /<<PKGBUILDDIR>>/src/testutils/../external/tinyxml2 -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/shake.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdlib/tests/simulationsignal.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 84%] Built target testutils-test
/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/listed-forces/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/listed-forces/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color=
Scanning dependencies of target listed-forces-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/listed-forces/tests/bonded.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 84%] Built target applied-forces-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/commandline/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color=
Scanning dependencies of target commandline-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
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/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/ewald/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
Scanning dependencies of target ewald-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmebsplinetest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 85%] Built target listed-forces-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmegathertest.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 86%] Built target mdlib-test
/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/fft/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fft/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color=
Scanning dependencies of target fft-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fft/tests/fft.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 86%] Built target fft-test
/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color=
Scanning dependencies of target gpu_utils-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests/gputest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests/hostallocator.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesolvetest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp
/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/hardware/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/hardware/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color=
Scanning dependencies of target hardware-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/hardware/tests/hardwaretopology.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/gpu_utils/tests/devicetransfers.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlineparser.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 87%] Built target gpu_utils-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/pmetestcommon.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/math/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
Scanning dependencies of target math-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/tests/functions.cpp
[ 87%] Built target hardware-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/ewald/tests/testhardwarecontexts.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/commandline/tests/pargs.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/tests/invertmatrix.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 88%] Built target ewald-test
/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color=
Scanning dependencies of target mdrunutility-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests/threadaffinity.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/math/tests/vectypes.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color=
Scanning dependencies of target mdrunutility-mpi-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 89%] Built target commandline-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 89%] Built target math-test
/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color=
Scanning dependencies of target onlinehelp-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests/helpformat.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests/helpmanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 89%] Built target mdrunutility-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp
/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/options/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color=
Scanning dependencies of target options-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/abstractoptionstorage.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/filenameoption.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 89%] Built target mdrunutility-mpi-test
/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/random/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color=
Scanning dependencies of target random-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/exponentialdistribution.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 90%] Built target onlinehelp-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/gammadistribution.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/filenameoptionmanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/normaldistribution.cpp
/usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/tables/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/tables/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color=
Scanning dependencies of target table-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/seed.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/tabulatednormaldistribution.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/option.cpp
/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/taskassignment/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/taskassignment/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color=
Scanning dependencies of target taskassignment-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/taskassignment/tests/usergpuids.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/optionsassigner.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/random/tabulatednormaldistribution.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/random/tests/tabulatednormaldistribution.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::TabulatedNormalDistributionTest_OutputDouble14_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]':
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]':
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}},
^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}},
^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^
/<<PKGBUILDDIR>>/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_'
GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_)
^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX'
EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}},
^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}},
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56,
from /<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:50:
/usr/include/c++/7/bits/vector.tcc: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list<gmx::NumericalSplineTableInput>' changed in GCC 7.1
TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}},
^~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/c++/7/bits/random.h:34,
from /usr/include/c++/7/random:49,
from /<<PKGBUILDDIR>>/src/gromacs/random/seed.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/random/threefry.h:51,
from /<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:43:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/7/bits/stl_vector.h:383:7: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
vector(initializer_list<value_type> __l,
^~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 90%] Built target taskassignment-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/uniformintdistribution.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 91%] Built target table-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/repeatingsection.cpp
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp: In function '(static initializers for /<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp)':
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:119:44: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
}};
^
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:131:43: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
}};
^
/<<PKGBUILDDIR>>/src/gromacs/random/tests/threefry.cpp:142:42: note: parameter passing for argument of type 'std::initializer_list<long long unsigned int>' changed in GCC 7.1
}};
^
/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/utility/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color=
Scanning dependencies of target utility-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/alignedallocator.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/random/tests/uniformrealdistribution.cpp
/usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/fileio/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color=
Scanning dependencies of target fileio-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tests/confio.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tests/readinp.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/timeunitmanager.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/arrayref.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/fileio/tests/tngio.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 93%] Built target random-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
/usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/pulling/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/pulling/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color=
Scanning dependencies of target pull-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/pulling/tests/pull.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/options/tests/treesupport.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 94%] Built target fileio-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/bitmask32.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 94%] Built target pull-test
/usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/awh/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color=
Scanning dependencies of target awh-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp
/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/gromacs/simd/tests /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color=
Scanning dependencies of target simd-test
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/bootstrap_loadstore.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 95%] Built target options-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/base.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/bitmask64.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.h:55,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.h:55,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp:37:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void gmx::test::BiasTest_ForcesBiasPmf_Test::TestBody()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/bias.h:55,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/bias.cpp:37:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'testing::Test* testing::internal::ParameterizedTestFactory<TestClass>::CreateTest() [with TestClass = gmx::test::BiasTest_ForcesBiasPmf_Test]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::test::BiasTest_DetectsCovering_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/data.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/tests/biasstate.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/bitmask128.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_floatingpoint.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/biasstate.h:57,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/biasstate.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In constructor 'gmx::test::BiasStateTest::BiasStateTest()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_vector_operations.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/awh/tests/grid.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_math.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<PKGBUILDDIR>>/src/gromacs/awh/dimparams.h:52,
from /<<PKGBUILDDIR>>/src/gromacs/awh/grid.h:60,
from /<<PKGBUILDDIR>>/src/gromacs/awh/tests/grid.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator<gmx::DimParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<gmx::DimParams>::iterator {aka __gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'virtual void gmx::test::gridTest_neighborhood_Test::TestBody()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gmx::DimParams*, std::vector<gmx::DimParams> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_memory.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd_integer.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 95%] Built target awh-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/keyvaluetreetransform.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/logger.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4_floatingpoint.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4_vector_operations.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/simd4_math.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/mutex.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/scalar.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/scalar_util.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/simd/tests/scalar_math.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/path.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/stringutil.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/textreader.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/textwriter.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[ 97%] Built target simd-test
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<<PKGBUILDDIR>>/src/gromacs/utility/tests/typetraits.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/include -isystem /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/include -I/<<PKGBUILDDIR>>/build/mpich/src -isystem /<<PKGBUILDDIR>>/src/external/thread_mpi/include -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<<PKGBUILDDIR>>/src/testutils/unittest_main.cpp
cd /<<PKGBUILDDIR>>/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1
/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[100%] Built target utility-test
/usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
cd /<<PKGBUILDDIR>>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich /<<PKGBUILDDIR>>/build/mpich/CMakeFiles/tests.dir/DependInfo.cmake --color=
Scanning dependencies of target tests
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/mpich'
make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
[100%] Built target tests
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/mpich/CMakeFiles 0
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/build/mpich'
(cd build/mpich; LD_LIBRARY_PATH=/<<PKGBUILDDIR>>/build/mpich/lib ctest -V)
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/build/mpich/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/build/mpich/DartConfiguration.tcl
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/build/mpich/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/build/mpich/DartConfiguration.tcl
Test project /<<PKGBUILDDIR>>/build/mpich
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
Start 1: TestUtilsUnitTests
1: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/testutils-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/TestUtilsUnitTests.xml"
1: Test timeout computed to be: 30
1: [==========] Running 59 tests from 5 test cases.
1: [----------] Global test environment set-up.
1: [----------] 10 tests from InteractiveTestHelperTest
1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession
1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms)
1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline
1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (2 ms)
1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput
1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput
1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput
1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (2 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput
1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput
1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (2 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput
1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput
1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms)
1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput
1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms)
1: [----------] 10 tests from InteractiveTestHelperTest (13 ms total)
1:
1: [----------] 34 tests from ReferenceDataTest
1: [ RUN ] ReferenceDataTest.HandlesSimpleData
1: [ OK ] ReferenceDataTest.HandlesSimpleData (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData
1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks
1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesStringBlockData
1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesVectorData
1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesSequenceData
1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData
1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesIncorrectData
1: [ OK ] ReferenceDataTest.HandlesIncorrectData (2 ms)
1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType
1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMissingData
1: [ OK ] ReferenceDataTest.HandlesMissingData (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUncheckedData
1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence
1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound
1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesVariants
1: [ OK ] ReferenceDataTest.HandlesVariants (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree
1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey
1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey
1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue
1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (2 ms)
1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType
1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile
1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings
1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace
1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings
1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock
1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices
1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData
1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds
1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds
1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesReadingValues
1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms)
1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries
1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms)
1: [----------] 34 tests from ReferenceDataTest (23 ms total)
1:
1: [----------] 7 tests from FloatingPointDifferenceTest
1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues
1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues
1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign
1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero
1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences
1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero
1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms)
1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN
1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms)
1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total)
1:
1: [----------] 4 tests from FloatingPointToleranceTest
1: [ RUN ] FloatingPointToleranceTest.UlpTolerance
1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms)
1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint
1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms)
1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp
1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms)
1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance
1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms)
1: [----------] 4 tests from FloatingPointToleranceTest (1 ms total)
1:
1: [----------] 4 tests from XvgTests
1: [ RUN ] XvgTests.CreateFile
1: [ OK ] XvgTests.CreateFile (1 ms)
1: [ RUN ] XvgTests.CheckMissing
1: [ OK ] XvgTests.CheckMissing (0 ms)
1: [ RUN ] XvgTests.CheckExtra
1: [ OK ] XvgTests.CheckExtra (1 ms)
1: [ RUN ] XvgTests.ReadIncorrect
1: [ OK ] XvgTests.ReadIncorrect (1 ms)
1: [----------] 4 tests from XvgTests (4 ms total)
1:
1: [----------] Global test environment tear-down
1: [==========] 59 tests from 5 test cases ran. (42 ms total)
1: [ PASSED ] 59 tests.
1/24 Test #1: TestUtilsUnitTests ............... Passed 0.06 sec
test 2
Start 2: TestUtilsMpiUnitTests
2: Test command: /usr/bin/mpiexec.mpich "-np" "2" "/<<PKGBUILDDIR>>/build/mpich/bin/testutils-mpi-test" "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/TestUtilsMpiUnitTests.xml"
2: Test timeout computed to be: 30
2: Fatal error in PMPI_Init_thread: Other MPI error, error stack:
2: MPIR_Init_thread(506)..............:
2: MPID_Init(211).....................: channel initialization failed
2: MPIDI_CH3_Init(89).................:
2: MPID_nem_init(324).................:
2: MPID_nem_tcp_init(178).............:
2: MPID_nem_tcp_get_business_card(425):
2: ckpt_restart(384)..................: gethostbyname failed, mb-lxc-02 (errno 1)
2/24 Test #2: TestUtilsMpiUnitTests ............***Failed 0.09 sec
Fatal error in PMPI_Init_thread: Other MPI error, error stack:
MPIR_Init_thread(506)..............:
MPID_Init(211).....................: channel initialization failed
MPIDI_CH3_Init(89).................:
MPID_nem_init(324).................:
MPID_nem_tcp_init(178).............:
MPID_nem_tcp_get_business_card(425):
ckpt_restart(384)..................: gethostbyname failed, mb-lxc-02 (errno 1)
test 3
Start 3: MdlibUnitTest
3: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/mdlib-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/MdlibUnitTest.xml"
3: Test timeout computed to be: 30
3: [==========] Running 37 tests from 5 test cases.
3: [----------] Global test environment set-up.
3: [----------] 1 test from VerletBufferConstraintTest
3: [ RUN ] VerletBufferConstraintTest.EqualMasses
3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms)
3: [----------] 1 test from VerletBufferConstraintTest (0 ms total)
3:
3: [----------] 4 tests from ShakeTest
3: [ RUN ] ShakeTest.ConstrainsOneBond
3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms)
3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds
3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms)
3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom
3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms)
3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms
3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms)
3: [----------] 4 tests from ShakeTest (0 ms total)
3:
3: [----------] 1 test from NullSignalTest
3: [ RUN ] NullSignalTest.NullSignallerWorks
3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms)
3: [----------] 1 test from NullSignalTest (0 ms total)
3:
3: [----------] 7 tests from SignalTest
3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace
3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms)
3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace
3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms)
3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace
3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms)
3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace
3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms)
3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace
3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (1 ms)
3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace
3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms)
3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace
3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms)
3: [----------] 7 tests from SignalTest (1 ms total)
3:
3: [----------] 24 tests from WithParameters/SettleTest
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (1 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms)
3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23
3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms)
3: [----------] 24 tests from WithParameters/SettleTest (2 ms total)
3:
3: [----------] Global test environment tear-down
3: [==========] 37 tests from 5 test cases ran. (3 ms total)
3: [ PASSED ] 37 tests.
3/24 Test #3: MdlibUnitTest .................... Passed 0.02 sec
test 4
Start 4: AppliedForcesUnitTest
4: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/applied-forces-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/AppliedForcesUnitTest.xml"
4: Test timeout computed to be: 30
4: [==========] Running 3 tests from 1 test case.
4: [----------] Global test environment set-up.
4: [----------] 3 tests from ElectricFieldTest
4: [ RUN ] ElectricFieldTest.Static
4: [ OK ] ElectricFieldTest.Static (0 ms)
4: [ RUN ] ElectricFieldTest.Oscillating
4: [ OK ] ElectricFieldTest.Oscillating (0 ms)
4: [ RUN ] ElectricFieldTest.Pulsed
4: [ OK ] ElectricFieldTest.Pulsed (1 ms)
4: [----------] 3 tests from ElectricFieldTest (1 ms total)
4:
4: [----------] Global test environment tear-down
4: [==========] 3 tests from 1 test case ran. (1 ms total)
4: [ PASSED ] 3 tests.
4/24 Test #4: AppliedForcesUnitTest ............ Passed 0.01 sec
test 5
Start 5: ListedForcesTest
5: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/listed-forces-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/ListedForcesTest.xml"
5: Test timeout computed to be: 30
5: [==========] Running 15 tests from 1 test case.
5: [----------] Global test environment set-up.
5: [----------] 15 tests from BondedTest
5: [ RUN ] BondedTest.BondAnglePbcNone
5: [ OK ] BondedTest.BondAnglePbcNone (0 ms)
5: [ RUN ] BondedTest.BondAnglePbcXy
5: [ OK ] BondedTest.BondAnglePbcXy (0 ms)
5: [ RUN ] BondedTest.BondAnglePbcXyz
5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms)
5: [ RUN ] BondedTest.DihedralAnglePbcNone
5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms)
5: [ RUN ] BondedTest.DihedralAnglePbcXy
5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms)
5: [ RUN ] BondedTest.DihedralAnglePbcXyz
5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms)
5: [ RUN ] BondedTest.IfuncBondsPbcNo
5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms)
5: [ RUN ] BondedTest.IfuncBondsPbcXy
5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms)
5: [ RUN ] BondedTest.IfuncBondsPbcXyz
5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms)
5: [ RUN ] BondedTest.IfuncAnglesPbcNo
5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms)
5: [ RUN ] BondedTest.IfuncAnglesPbcXy
5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms)
5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ
5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms)
5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo
5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms)
5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy
5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms)
5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz
5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (1 ms)
5: [----------] 15 tests from BondedTest (2 ms total)
5:
5: [----------] Global test environment tear-down
5: [==========] 15 tests from 1 test case ran. (3 ms total)
5: [ PASSED ] 15 tests.
5/24 Test #5: ListedForcesTest ................. Passed 0.01 sec
test 6
Start 6: CommandLineUnitTests
6: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/commandline-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/CommandLineUnitTests.xml"
6: Test timeout computed to be: 30
6: [==========] Running 57 tests from 6 test cases.
6: [----------] Global test environment set-up.
6: [----------] 3 tests from CommandLineHelpModuleTest
6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp
6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (0 ms)
6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic
6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms)
6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp
6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (2 ms)
6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total)
6:
6: [----------] 6 tests from CommandLineHelpWriterTest
6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes
6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables
6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions
6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions
6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups
6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (1 ms)
6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText
6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms)
6: [----------] 6 tests from CommandLineHelpWriterTest (3 ms total)
6:
6: [----------] 6 tests from CommandLineModuleManagerTest
6: [ RUN ] CommandLineModuleManagerTest.RunsModule
6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (1 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms)
6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule
6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms)
6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames
6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms)
6: [----------] 6 tests from CommandLineModuleManagerTest (2 ms total)
6:
6: [----------] 13 tests from CommandLineParserTest
6: [ RUN ] CommandLineParserTest.HandlesSingleValues
6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument
6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument
6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms)
6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument
6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (1 ms)
6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers
6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesString
6: [ OK ] CommandLineParserTest.HandlesString (0 ms)
6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues
6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix
6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers
6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms)
6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown
6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms)
6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault
6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms)
6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments
6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms)
6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions
6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms)
6: [----------] 13 tests from CommandLineParserTest (1 ms total)
6:
6: [----------] 6 tests from CommandLineProgramContextTest
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath
6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (1 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath
6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms)
6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink
6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms)
6: [----------] 6 tests from CommandLineProgramContextTest (1 ms total)
6:
6: [----------] 23 tests from ParseCommonArgsTest
6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs
6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args
6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs
6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs
6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs
6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs
6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs
6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit
6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs
6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs
6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults
6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName
6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms)
6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension
6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles
6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles
6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms)
6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified
6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (1 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles
6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms)
6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension
6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms)
6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile
6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms)
6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName
6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode
6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (0 ms)
6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName
6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms)
6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs
6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms)
6: [----------] 23 tests from ParseCommonArgsTest (4 ms total)
6:
6: [----------] Global test environment tear-down
6: [==========] 57 tests from 6 test cases ran. (15 ms total)
6: [ PASSED ] 57 tests.
6/24 Test #6: CommandLineUnitTests ............. Passed 0.03 sec
test 7
Start 7: EwaldUnitTests
7: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/ewald-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/EwaldUnitTests.xml"
7: Test timeout computed to be: 30
7: [==========] Running 257 tests from 10 test cases.
7: [----------] Global test environment set-up.
7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms)
7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4
7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms)
7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total)
7:
7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (10 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (4 ms)
7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23
7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (3 ms)
7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (86 ms total)
7:
7: [----------] 144 tests from SaneInput/PmeGatherTest
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (2 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms)
7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143
7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms)
7: [----------] 144 tests from SaneInput/PmeGatherTest (155 ms total)
7:
7: [----------] 16 tests from SaneInput/PmeSolveTest
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (5 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (5 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (4 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (6 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (5 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (3 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (2 ms)
7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15
7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (3 ms)
7: [----------] 16 tests from SaneInput/PmeSolveTest (55 ms total)
7:
7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (3 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (2 ms)
7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (18 ms total)
7:
7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (3 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (5 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (3 ms)
7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms)
7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (32 ms total)
7:
7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (5 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (4 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (5 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (5 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (3 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (2 ms)
7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15
7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (3 ms)
7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (50 ms total)
7:
7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms)
7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11
7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms)
7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (42 ms total)
7:
7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (4 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (4 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (5 ms)
7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11
7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms)
7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (51 ms total)
7:
7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (6 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (7 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (9 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (10 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (14 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (15 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (6 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (7 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (9 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (11 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (13 ms)
7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11
7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (15 ms)
7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (140 ms total)
7:
7: [----------] Global test environment tear-down
7: [==========] 257 tests from 10 test cases ran. (649 ms total)
7: [ PASSED ] 257 tests.
7/24 Test #7: EwaldUnitTests ................... Passed 0.73 sec
test 8
Start 8: FFTUnitTests
8: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/fft-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/FFTUnitTests.xml"
8: Test timeout computed to be: 30
8: [==========] Running 14 tests from 4 test cases.
8: [----------] Global test environment set-up.
8: [----------] 2 tests from ManyFFTTest
8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test
8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (8 ms)
8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test
8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (13 ms)
8: [----------] 2 tests from ManyFFTTest (23 ms total)
8:
8: [----------] 1 test from FFTTest
8: [ RUN ] FFTTest.Real2DLength18_15Test
8: [ OK ] FFTTest.Real2DLength18_15Test (4 ms)
8: [----------] 1 test from FFTTest (5 ms total)
8:
8: [----------] 1 test from FFFTest3D
8: [ RUN ] FFFTest3D.Real5_6_9
8: [ OK ] FFFTest3D.Real5_6_9 (2 ms)
8: [----------] 1 test from FFFTest3D (3 ms total)
8:
8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4
8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (8 ms)
8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4
8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (11 ms)
8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (30 ms total)
8:
8: [----------] Global test environment tear-down
8: [==========] 14 tests from 4 test cases ran. (61 ms total)
8: [ PASSED ] 14 tests.
8/24 Test #8: FFTUnitTests ..................... Passed 0.07 sec
test 9
Start 9: GpuUtilsUnitTests
9: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/gpu_utils-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/GpuUtilsUnitTests.xml"
9: Test timeout computed to be: 30
9: [==========] Running 30 tests from 6 test cases.
9: [----------] Global test environment set-up.
9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int
9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks
9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks
9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork
9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms)
9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve
9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms)
9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda
9:
9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
9: [ OK ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda (3 ms)
9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda
9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms)
9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory
9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms)
9: [----------] 7 tests from HostAllocatorTest/0 (4 ms total)
9:
9: [----------] 7 tests from HostAllocatorTest/1, where TypeParam = float
9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks
9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks
9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork
9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms)
9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve
9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms)
9: [ RUN ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda
9:
9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
9: [ OK ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda (2 ms)
9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda
9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms)
9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory
9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms)
9: [----------] 7 tests from HostAllocatorTest/1 (3 ms total)
9:
9: [----------] 7 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector<float>
9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks
9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks
9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork
9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms)
9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve
9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms)
9: [ RUN ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda
9:
9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
9: [ OK ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda (2 ms)
9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda
9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms)
9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory
9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms)
9: [----------] 7 tests from HostAllocatorTest/2 (3 ms total)
9:
9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator<float, gmx::HostAllocationPolicy>
9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment
9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment
9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment
9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms)
9: [----------] 3 tests from AllocatorTest/0 (0 ms total)
9:
9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator<int, gmx::HostAllocationPolicy>
9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment
9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment
9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment
9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms)
9: [----------] 3 tests from AllocatorTest/1 (0 ms total)
9:
9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator<gmx::BasicVector<float>, gmx::HostAllocationPolicy>
9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment
9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms)
9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment
9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms)
9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment
9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms)
9: [----------] 3 tests from AllocatorTest/2 (1 ms total)
9:
9: [----------] Global test environment tear-down
9: [==========] 30 tests from 6 test cases ran. (11 ms total)
9: [ PASSED ] 30 tests.
9/24 Test #9: GpuUtilsUnitTests ................ Passed 0.03 sec
test 10
Start 10: HardwareUnitTests
10: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/hardware-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/HardwareUnitTests.xml"
10: Test timeout computed to be: 30
10: [==========] Running 4 tests from 1 test case.
10: [----------] Global test environment set-up.
10: [----------] 4 tests from HardwareTopologyTest
10: [ RUN ] HardwareTopologyTest.Execute
10: [ OK ] HardwareTopologyTest.Execute (11 ms)
10: [ RUN ] HardwareTopologyTest.HwlocExecute
10: [ OK ] HardwareTopologyTest.HwlocExecute (9 ms)
10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency
10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (10 ms)
10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency
10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (10 ms)
10: [----------] 4 tests from HardwareTopologyTest (40 ms total)
10:
10: [----------] Global test environment tear-down
10: [==========] 4 tests from 1 test case ran. (40 ms total)
10: [ PASSED ] 4 tests.
10/24 Test #10: HardwareUnitTests ................ Passed 0.05 sec
test 11
Start 11: MathUnitTests
11: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/math-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/MathUnitTests.xml"
11: Test timeout computed to be: 30
11: [==========] Running 31 tests from 4 test cases.
11: [----------] Global test environment set-up.
11: [----------] 21 tests from FunctionTest
11: [ RUN ] FunctionTest.StaticLog2
11: [ OK ] FunctionTest.StaticLog2 (1 ms)
11: [ RUN ] FunctionTest.Log2I32Bit
11: [ OK ] FunctionTest.Log2I32Bit (0 ms)
11: [ RUN ] FunctionTest.Log2I64Bit
11: [ OK ] FunctionTest.Log2I64Bit (0 ms)
11: [ RUN ] FunctionTest.GreatestCommonDivisor
11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms)
11: [ RUN ] FunctionTest.InvsqrtFloat
11: [ OK ] FunctionTest.InvsqrtFloat (1 ms)
11: [ RUN ] FunctionTest.InvsqrtDouble
11: [ OK ] FunctionTest.InvsqrtDouble (0 ms)
11: [ RUN ] FunctionTest.InvsqrtInteger
11: [ OK ] FunctionTest.InvsqrtInteger (0 ms)
11: [ RUN ] FunctionTest.InvcbrtFloat
11: [ OK ] FunctionTest.InvcbrtFloat (0 ms)
11: [ RUN ] FunctionTest.InvcbrtDouble
11: [ OK ] FunctionTest.InvcbrtDouble (1 ms)
11: [ RUN ] FunctionTest.InvcbrtInteger
11: [ OK ] FunctionTest.InvcbrtInteger (0 ms)
11: [ RUN ] FunctionTest.SixthrootFloat
11: [ OK ] FunctionTest.SixthrootFloat (0 ms)
11: [ RUN ] FunctionTest.SixthrootDouble
11: [ OK ] FunctionTest.SixthrootDouble (0 ms)
11: [ RUN ] FunctionTest.SixthrootInteger
11: [ OK ] FunctionTest.SixthrootInteger (0 ms)
11: [ RUN ] FunctionTest.InvsixthrootFloat
11: [ OK ] FunctionTest.InvsixthrootFloat (1 ms)
11: [ RUN ] FunctionTest.InvsixthrootDouble
11: [ OK ] FunctionTest.InvsixthrootDouble (0 ms)
11: [ RUN ] FunctionTest.InvsixthrootInteger
11: [ OK ] FunctionTest.InvsixthrootInteger (0 ms)
11: [ RUN ] FunctionTest.Powers
11: [ OK ] FunctionTest.Powers (0 ms)
11: [ RUN ] FunctionTest.ErfInvFloat
11: [ OK ] FunctionTest.ErfInvFloat (0 ms)
11: [ RUN ] FunctionTest.ErfInvDouble
11: [ OK ] FunctionTest.ErfInvDouble (1 ms)
11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat
11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms)
11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble
11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms)
11: [----------] 21 tests from FunctionTest (6 ms total)
11:
11: [----------] 2 tests from InvertMatrixTest
11: [ RUN ] InvertMatrixTest.IdentityIsImpotent
11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms)
11: [ RUN ] InvertMatrixTest.ComputesInverse
11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms)
11: [----------] 2 tests from InvertMatrixTest (0 ms total)
11:
11: [----------] 2 tests from InvertBoxMatrixTest
11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent
11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms)
11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace
11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms)
11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total)
11:
11: [----------] 6 tests from RVecTest
11: [ RUN ] RVecTest.CanBeStoredInVector
11: [ OK ] RVecTest.CanBeStoredInVector (0 ms)
11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec
11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms)
11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec
11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms)
11: [ RUN ] RVecTest.WorksAsMutable_rvec
11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms)
11: [ RUN ] RVecTest.WorksAs_rvec_Array
11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms)
11: [ RUN ] RVecTest.WorksAs_rvec_Reference
11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms)
11: [----------] 6 tests from RVecTest (0 ms total)
11:
11: [----------] Global test environment tear-down
11: [==========] 31 tests from 4 test cases ran. (6 ms total)
11: [ PASSED ] 31 tests.
11/24 Test #11: MathUnitTests .................... Passed 0.02 sec
test 12
Start 12: MdrunUtilityUnitTests
12: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/mdrunutility-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/MdrunUtilityUnitTests.xml"
12: Test timeout computed to be: 30
12: [==========] Running 17 tests from 1 test case.
12: [----------] Global test environment set-up.
12: [----------] 17 tests from ThreadAffinityTest
12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled
12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported
12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware
12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads
12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset
12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms)
12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride
12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto
12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms)
12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced
12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced
12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms)
12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread
12: NOTE: Affinity setting failed.
12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms)
12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto
12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced
12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms)
12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads
12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms)
12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing
12: NOTE: Affinity setting for 1/2 threads failed.
12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (2 ms)
12: [----------] 17 tests from ThreadAffinityTest (10 ms total)
12:
12: [----------] Global test environment tear-down
12: [==========] 17 tests from 1 test case ran. (10 ms total)
12: [ PASSED ] 17 tests.
12/24 Test #12: MdrunUtilityUnitTests ............ Passed 0.02 sec
test 13
Start 13: MdrunUtilityMpiUnitTests
13: Test command: /usr/bin/mpiexec.mpich "-np" "4" "/<<PKGBUILDDIR>>/build/mpich/bin/mdrunutility-mpi-test" "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/MdrunUtilityMpiUnitTests.xml"
13: Test timeout computed to be: 30
13: Fatal error in PMPI_Init_thread: Other MPI error, error stack:
13: MPIR_Init_thread(506)..............:
13: MPID_Init(211).....................: channel initialization failed
13: MPIDI_CH3_Init(89).................:
13: MPID_nem_init(324).................:
13: MPID_nem_tcp_init(178).............:
13: MPID_nem_tcp_get_business_card(425):
13: ckpt_restart(384)..................: gethostbyname failed, mb-lxc-02 (errno 1)
13/24 Test #13: MdrunUtilityMpiUnitTests .........***Failed 0.03 sec
Fatal error in PMPI_Init_thread: Other MPI error, error stack:
MPIR_Init_thread(506)..............:
MPID_Init(211).....................: channel initialization failed
MPIDI_CH3_Init(89).................:
MPID_nem_init(324).................:
MPID_nem_tcp_init(178).............:
MPID_nem_tcp_get_business_card(425):
ckpt_restart(384)..................: gethostbyname failed, mb-lxc-02 (errno 1)
test 14
Start 14: OnlineHelpUnitTests
14: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/onlinehelp-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/OnlineHelpUnitTests.xml"
14: Test timeout computed to be: 30
14: [==========] Running 22 tests from 4 test cases.
14: [----------] Global test environment set-up.
14: [----------] 6 tests from TextTableFormatterTest
14: [ RUN ] TextTableFormatterTest.HandlesBasicCase
14: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms)
14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles
14: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesIndentation
14: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines
14: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding
14: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms)
14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns
14: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (1 ms)
14: [----------] 6 tests from TextTableFormatterTest (2 ms total)
14:
14: [----------] 3 tests from HelpManagerTest
14: [ RUN ] HelpManagerTest.HandlesRootTopic
14: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms)
14: [ RUN ] HelpManagerTest.HandlesSubTopics
14: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms)
14: [ RUN ] HelpManagerTest.HandlesInvalidTopics
14: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms)
14: [----------] 3 tests from HelpManagerTest (0 ms total)
14:
14: [----------] 2 tests from HelpTopicFormattingTest
14: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic
14: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (1 ms)
14: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics
14: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms)
14: [----------] 2 tests from HelpTopicFormattingTest (1 ms total)
14:
14: [----------] 11 tests from HelpWriterContextTest
14: [ RUN ] HelpWriterContextTest.FormatsParagraphs
14: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs
14: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms)
14: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace
14: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (1 ms)
14: [ RUN ] HelpWriterContextTest.FormatsLiteralText
14: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning
14: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation
14: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsBulletList
14: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList
14: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (1 ms)
14: [ RUN ] HelpWriterContextTest.FormatsSimpleTable
14: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsGridTable
14: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms)
14: [ RUN ] HelpWriterContextTest.FormatsTitles
14: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms)
14: [----------] 11 tests from HelpWriterContextTest (2 ms total)
14:
14: [----------] Global test environment tear-down
14: [==========] 22 tests from 4 test cases ran. (5 ms total)
14: [ PASSED ] 22 tests.
14/24 Test #14: OnlineHelpUnitTests .............. Passed 0.02 sec
test 15
Start 15: OptionsUnitTests
15: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/options-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/OptionsUnitTests.xml"
15: Test timeout computed to be: 30
15: [==========] Running 110 tests from 18 test cases.
15: [----------] Global test environment set-up.
15: [----------] 5 tests from AbstractOptionStorageTest
15: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish
15: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms)
15: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval
15: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (1 ms)
15: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition
15: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms)
15: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition
15: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms)
15: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues
15: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms)
15: [----------] 5 tests from AbstractOptionStorageTest (2 ms total)
15:
15: [----------] 8 tests from FileNameOptionTest
15: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension
15: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue
15: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption
15: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension
15: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension
15: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms)
15: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension
15: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms)
15: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix
15: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms)
15: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix
15: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms)
15: [----------] 8 tests from FileNameOptionTest (1 ms total)
15:
15: [----------] 15 tests from FileNameOptionManagerTest
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension
15: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile
15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified
15: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified
15: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified
15: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (1 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile
15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms)
15: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking
15: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms)
15: [----------] 15 tests from FileNameOptionManagerTest (1 ms total)
15:
15: [----------] 1 test from OptionsTest
15: [ RUN ] OptionsTest.FailsOnNonsafeStorage
15: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms)
15: [----------] 1 test from OptionsTest (0 ms total)
15:
15: [----------] 9 tests from OptionsAssignerTest
15: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter
15: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue
15: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter
15: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter
15: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesMissingValue
15: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesExtraValue
15: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesGroups
15: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesSections
15: [ OK ] OptionsAssignerTest.HandlesSections (0 ms)
15: [ RUN ] OptionsAssignerTest.HandlesMultipleSources
15: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms)
15: [----------] 9 tests from OptionsAssignerTest (1 ms total)
15:
15: [----------] 4 tests from OptionsAssignerBooleanTest
15: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue
15: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms)
15: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue
15: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms)
15: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo
15: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms)
15: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue
15: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms)
15: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total)
15:
15: [----------] 13 tests from OptionsAssignerIntegerTest
15: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue
15: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow
15: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue
15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet
15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet
15: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues
15: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.StoresToVector
15: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment
15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms)
15: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total)
15:
15: [----------] 5 tests from OptionsAssignerDoubleTest
15: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue
15: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat
15: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue
15: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue
15: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms)
15: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue
15: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms)
15: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total)
15:
15: [----------] 9 tests from OptionsAssignerStringTest
15: [ RUN ] OptionsAssignerStringTest.StoresSingleValue
15: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue
15: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray
15: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue
15: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue
15: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue
15: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue
15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (1 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable
15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms)
15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector
15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms)
15: [----------] 9 tests from OptionsAssignerStringTest (1 ms total)
15:
15: [----------] 6 tests from OptionsAssignerEnumTest
15: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue
15: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues
15: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange
15: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue
15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable
15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms)
15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector
15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms)
15: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total)
15:
15: [----------] 8 tests from RepeatingOptionSectionTest
15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance
15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption
15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance
15: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue
15: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances
15: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault
15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault
15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms)
15: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections
15: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms)
15: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total)
15:
15: [----------] 1 test from TimeUnitManagerTest
15: [ RUN ] TimeUnitManagerTest.BasicOperations
15: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms)
15: [----------] 1 test from TimeUnitManagerTest (0 ms total)
15:
15: [----------] 4 tests from TimeUnitBehaviorTest
15: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue
15: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms)
15: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues
15: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms)
15: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources
15: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms)
15: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks
15: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms)
15: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total)
15:
15: [----------] 2 tests from TreeValueSupportAssignTest
15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree
15: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms)
15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays
15: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms)
15: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total)
15:
15: [----------] 1 test from TreeValueSupportAssignErrorTest
15: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue
15: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms)
15: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total)
15:
15: [----------] 5 tests from TreeValueSupportCheckTest
15: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty
15: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree
15: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1
15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2
15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms)
15: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue
15: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (1 ms)
15: [----------] 5 tests from TreeValueSupportCheckTest (1 ms total)
15:
15: [----------] 6 tests from TreeValueSupportAdjustTest
15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues
15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues
15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues
15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues
15: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms)
15: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues
15: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (1 ms)
15: [ RUN ] TreeValueSupportAdjustTest.OrdersValues
15: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms)
15: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total)
15:
15: [----------] 8 tests from TreeValueSupportTest
15: [ RUN ] TreeValueSupportTest.SupportsBooleanOption
15: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsIntegerOption
15: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsInt64Option
15: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsStringOption
15: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsFloatOption
15: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsDoubleOption
15: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption
15: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms)
15: [ RUN ] TreeValueSupportTest.SupportsEnumOption
15: [ OK ] TreeValueSupportTest.SupportsEnumOption (1 ms)
15: [----------] 8 tests from TreeValueSupportTest (2 ms total)
15:
15: [----------] Global test environment tear-down
15: [==========] 110 tests from 18 test cases ran. (12 ms total)
15: [ PASSED ] 110 tests.
15/24 Test #15: OptionsUnitTests ................. Passed 0.03 sec
test 16
Start 16: RandomUnitTests
16: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/random-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/RandomUnitTests.xml"
16: Test timeout computed to be: 30
16: [==========] Running 44 tests from 10 test cases.
16: [----------] Global test environment set-up.
16: [----------] 4 tests from ExponentialDistributionTest
16: [ RUN ] ExponentialDistributionTest.Output
16: [ OK ] ExponentialDistributionTest.Output (1 ms)
16: [ RUN ] ExponentialDistributionTest.Logical
16: [ OK ] ExponentialDistributionTest.Logical (0 ms)
16: [ RUN ] ExponentialDistributionTest.Reset
16: [ OK ] ExponentialDistributionTest.Reset (0 ms)
16: [ RUN ] ExponentialDistributionTest.AltParam
16: [ OK ] ExponentialDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from ExponentialDistributionTest (1 ms total)
16:
16: [----------] 4 tests from GammaDistributionTest
16: [ RUN ] GammaDistributionTest.Output
16: [ OK ] GammaDistributionTest.Output (0 ms)
16: [ RUN ] GammaDistributionTest.Logical
16: [ OK ] GammaDistributionTest.Logical (0 ms)
16: [ RUN ] GammaDistributionTest.Reset
16: [ OK ] GammaDistributionTest.Reset (0 ms)
16: [ RUN ] GammaDistributionTest.AltParam
16: [ OK ] GammaDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from GammaDistributionTest (0 ms total)
16:
16: [----------] 4 tests from NormalDistributionTest
16: [ RUN ] NormalDistributionTest.Output
16: [ OK ] NormalDistributionTest.Output (0 ms)
16: [ RUN ] NormalDistributionTest.Logical
16: [ OK ] NormalDistributionTest.Logical (0 ms)
16: [ RUN ] NormalDistributionTest.Reset
16: [ OK ] NormalDistributionTest.Reset (0 ms)
16: [ RUN ] NormalDistributionTest.AltParam
16: [ OK ] NormalDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from NormalDistributionTest (1 ms total)
16:
16: [----------] 1 test from SeedTest
16: [ RUN ] SeedTest.makeRandomSeed
16: [ OK ] SeedTest.makeRandomSeed (0 ms)
16: [----------] 1 test from SeedTest (0 ms total)
16:
16: [----------] 6 tests from TabulatedNormalDistributionTest
16: [ RUN ] TabulatedNormalDistributionTest.Output14
16: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.Output16
16: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14
16: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (1 ms)
16: [ RUN ] TabulatedNormalDistributionTest.Logical
16: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.Reset
16: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms)
16: [ RUN ] TabulatedNormalDistributionTest.AltParam
16: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms)
16: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total)
16:
16: [----------] 1 test from TabulatedNormalDistributionTableTest
16: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties
16: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (4 ms)
16: [----------] 1 test from TabulatedNormalDistributionTableTest (4 ms total)
16:
16: [----------] 6 tests from ThreeFry2x64Test
16: [ RUN ] ThreeFry2x64Test.Logical
16: [ OK ] ThreeFry2x64Test.Logical (0 ms)
16: [ RUN ] ThreeFry2x64Test.InternalCounterSequence
16: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms)
16: [ RUN ] ThreeFry2x64Test.Reseed
16: [ OK ] ThreeFry2x64Test.Reseed (0 ms)
16: [ RUN ] ThreeFry2x64Test.Discard
16: [ OK ] ThreeFry2x64Test.Discard (0 ms)
16: [ RUN ] ThreeFry2x64Test.InvalidCounter
16: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms)
16: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter
16: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms)
16: [----------] 6 tests from ThreeFry2x64Test (0 ms total)
16:
16: [----------] 4 tests from UniformIntDistributionTest
16: [ RUN ] UniformIntDistributionTest.Output
16: [ OK ] UniformIntDistributionTest.Output (0 ms)
16: [ RUN ] UniformIntDistributionTest.Logical
16: [ OK ] UniformIntDistributionTest.Logical (0 ms)
16: [ RUN ] UniformIntDistributionTest.Reset
16: [ OK ] UniformIntDistributionTest.Reset (0 ms)
16: [ RUN ] UniformIntDistributionTest.AltParam
16: [ OK ] UniformIntDistributionTest.AltParam (0 ms)
16: [----------] 4 tests from UniformIntDistributionTest (1 ms total)
16:
16: [----------] 5 tests from UniformRealDistributionTest
16: [ RUN ] UniformRealDistributionTest.GenerateCanonical
16: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms)
16: [ RUN ] UniformRealDistributionTest.Output
16: [ OK ] UniformRealDistributionTest.Output (0 ms)
16: [ RUN ] UniformRealDistributionTest.Logical
16: [ OK ] UniformRealDistributionTest.Logical (0 ms)
16: [ RUN ] UniformRealDistributionTest.Reset
16: [ OK ] UniformRealDistributionTest.Reset (0 ms)
16: [ RUN ] UniformRealDistributionTest.AltParam
16: [ OK ] UniformRealDistributionTest.AltParam (0 ms)
16: [----------] 5 tests from UniformRealDistributionTest (0 ms total)
16:
16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (1 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (1 ms)
16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2
16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms)
16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (2 ms total)
16:
16: [----------] Global test environment tear-down
16: [==========] 44 tests from 10 test cases ran. (10 ms total)
16: [ PASSED ] 44 tests.
16/24 Test #16: RandomUnitTests .................. Passed 0.05 sec
test 17
Start 17: TableUnitTests
17: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/table-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/TableUnitTests.xml"
17: Test timeout computed to be: 30
17: [==========] Running 16 tests from 2 test cases.
17: [----------] Global test environment set-up.
17: [----------] 8 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable
17: [ RUN ] SplineTableTest/0.HandlesIncorrectInput
17: [ OK ] SplineTableTest/0.HandlesIncorrectInput (5 ms)
17: [ RUN ] SplineTableTest/0.Sinc
17: [ OK ] SplineTableTest/0.Sinc (2 ms)
17: [ RUN ] SplineTableTest/0.LJ12
17: [ OK ] SplineTableTest/0.LJ12 (50 ms)
17: [ RUN ] SplineTableTest/0.PmeCorrection
17: [ OK ] SplineTableTest/0.PmeCorrection (4 ms)
17: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput
17: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms)
17: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr
17: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (3 ms)
17: [ RUN ] SplineTableTest/0.TwoFunctions
17: [ OK ] SplineTableTest/0.TwoFunctions (100 ms)
17: [ RUN ] SplineTableTest/0.ThreeFunctions
17: [ OK ] SplineTableTest/0.ThreeFunctions (109 ms)
17: [----------] 8 tests from SplineTableTest/0 (273 ms total)
17:
17: [----------] 8 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable
17: [ RUN ] SplineTableTest/1.HandlesIncorrectInput
17: [ OK ] SplineTableTest/1.HandlesIncorrectInput (5 ms)
17: [ RUN ] SplineTableTest/1.Sinc
17: [ OK ] SplineTableTest/1.Sinc (2 ms)
17: [ RUN ] SplineTableTest/1.LJ12
17: [ OK ] SplineTableTest/1.LJ12 (8 ms)
17: [ RUN ] SplineTableTest/1.PmeCorrection
17: [ OK ] SplineTableTest/1.PmeCorrection (4 ms)
17: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput
17: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms)
17: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr
17: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms)
17: [ RUN ] SplineTableTest/1.TwoFunctions
17: [ OK ] SplineTableTest/1.TwoFunctions (17 ms)
17: [ RUN ] SplineTableTest/1.ThreeFunctions
17: [ OK ] SplineTableTest/1.ThreeFunctions (18 ms)
17: [----------] 8 tests from SplineTableTest/1 (58 ms total)
17:
17: [----------] Global test environment tear-down
17: [==========] 16 tests from 2 test cases ran. (331 ms total)
17: [ PASSED ] 16 tests.
17/24 Test #17: TableUnitTests ................... Passed 0.34 sec
test 18
Start 18: TaskAssignmentUnitTests
18: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/taskassignment-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/TaskAssignmentUnitTests.xml"
18: Test timeout computed to be: 30
18: [==========] Running 3 tests from 1 test case.
18: [----------] Global test environment set-up.
18: [----------] 3 tests from GpuIdStringHandlingTest
18: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork
18: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (1 ms)
18: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid
18: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms)
18: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow
18: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms)
18: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total)
18:
18: [----------] Global test environment tear-down
18: [==========] 3 tests from 1 test case ran. (1 ms total)
18: [ PASSED ] 3 tests.
18/24 Test #18: TaskAssignmentUnitTests .......... Passed 0.01 sec
test 19
Start 19: UtilityUnitTests
19: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/utility-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/UtilityUnitTests.xml"
19: Test timeout computed to be: 30
19: [==========] Running 307 tests from 49 test cases.
19: [----------] Global test environment set-up.
19: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator<float, gmx::AlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms)
19: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/0 (1 ms total)
19:
19: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator<float, gmx::PageAlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/1 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator<int, gmx::AlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/2 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator<int, gmx::PageAlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/3 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator<gmx::BasicVector<float>, gmx::AlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/4 (0 ms total)
19:
19: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator<gmx::BasicVector<float>, gmx::PageAlignedAllocationPolicy>
19: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment
19: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment
19: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms)
19: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment
19: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms)
19: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory
19: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms)
19: [----------] 4 tests from AllocatorTest/5 (1 ms total)
19:
19: [----------] 1 test from EmptyArrayRefTest
19: [ RUN ] EmptyArrayRefTest.IsEmpty
19: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms)
19: [----------] 1 test from EmptyArrayRefTest (0 ms total)
19:
19: [----------] 1 test from EmptyConstArrayRefTest
19: [ RUN ] EmptyConstArrayRefTest.IsEmpty
19: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms)
19: [----------] 1 test from EmptyConstArrayRefTest (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef<char>
19: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/0 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef<unsigned char>
19: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/1 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef<int>
19: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/2 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef<unsigned int>
19: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/3 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef<long>
19: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/4 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef<unsigned long>
19: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/5 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef<long long>
19: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/6 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef<unsigned long long>
19: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/7 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef<float>
19: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (1 ms)
19: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/8 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef<double>
19: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/9 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef<char const>
19: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/10 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef<unsigned char const>
19: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/11 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef<int const>
19: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/12 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef<unsigned int const>
19: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/13 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef<long const>
19: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/14 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef<unsigned long const>
19: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/15 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef<long long const>
19: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/16 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef<unsigned long long const>
19: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/17 (1 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef<float const>
19: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/18 (0 ms total)
19:
19: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef<double const>
19: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks
19: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks
19: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks
19: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks
19: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks
19: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks
19: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks
19: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms)
19: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks
19: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms)
19: [----------] 9 tests from ArrayRefTest/19 (0 ms total)
19:
19: [----------] 4 tests from KeyValueTreeSerializerTest
19: [ RUN ] KeyValueTreeSerializerTest.EmptyTree
19: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms)
19: [ RUN ] KeyValueTreeSerializerTest.SimpleObject
19: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms)
19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays
19: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms)
19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects
19: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms)
19: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total)
19:
19: [----------] 6 tests from TreeValueTransformTest
19: [ RUN ] TreeValueTransformTest.SimpleTransforms
19: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms)
19: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive
19: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms)
19: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject
19: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms)
19: [ RUN ] TreeValueTransformTest.ObjectFromString
19: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms)
19: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings
19: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms)
19: [ RUN ] TreeValueTransformTest.ScopedTransformRules
19: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms)
19: [----------] 6 tests from TreeValueTransformTest (1 ms total)
19:
19: [----------] 1 test from TreeValueTransformErrorTest
19: [ RUN ] TreeValueTransformErrorTest.ConversionError
19: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms)
19: [----------] 1 test from TreeValueTransformErrorTest (1 ms total)
19:
19: [----------] 5 tests from LoggerTest
19: [ RUN ] LoggerTest.EmptyLoggerWorks
19: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms)
19: [ RUN ] LoggerTest.LogsToStream
19: [ OK ] LoggerTest.LogsToStream (0 ms)
19: [ RUN ] LoggerTest.LogsToFile
19: [ OK ] LoggerTest.LogsToFile (1 ms)
19: [ RUN ] LoggerTest.LevelFilteringWorks
19: [ OK ] LoggerTest.LevelFilteringWorks (0 ms)
19: [ RUN ] LoggerTest.LogsToMultipleStreams
19: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms)
19: [----------] 5 tests from LoggerTest (1 ms total)
19:
19: [----------] 4 tests from MutexBasicTest
19: [ RUN ] MutexBasicTest.CanBeMade
19: [ OK ] MutexBasicTest.CanBeMade (0 ms)
19: [ RUN ] MutexBasicTest.CanBeLocked
19: [ OK ] MutexBasicTest.CanBeLocked (0 ms)
19: [ RUN ] MutexBasicTest.CanBeTryLocked
19: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms)
19: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard
19: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms)
19: [----------] 4 tests from MutexBasicTest (0 ms total)
19:
19: [----------] 3 tests from MutexTaskTest
19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock
19: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms)
19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread
19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms)
19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread
19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms)
19: [----------] 3 tests from MutexTaskTest (1 ms total)
19:
19: [----------] 2 tests from PathTest
19: [ RUN ] PathTest.StripSourcePrefixWorks
19: [ OK ] PathTest.StripSourcePrefixWorks (0 ms)
19: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks
19: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (0 ms)
19: [----------] 2 tests from PathTest (0 ms total)
19:
19: [----------] 7 tests from StringUtilityTest
19: [ RUN ] StringUtilityTest.StartsWith
19: [ OK ] StringUtilityTest.StartsWith (0 ms)
19: [ RUN ] StringUtilityTest.EndsWith
19: [ OK ] StringUtilityTest.EndsWith (0 ms)
19: [ RUN ] StringUtilityTest.StripSuffixIfPresent
19: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms)
19: [ RUN ] StringUtilityTest.StripString
19: [ OK ] StringUtilityTest.StripString (0 ms)
19: [ RUN ] StringUtilityTest.SplitString
19: [ OK ] StringUtilityTest.SplitString (0 ms)
19: [ RUN ] StringUtilityTest.SplitDelimitedString
19: [ OK ] StringUtilityTest.SplitDelimitedString (1 ms)
19: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString
19: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms)
19: [----------] 7 tests from StringUtilityTest (2 ms total)
19:
19: [----------] 2 tests from FormatStringTest
19: [ RUN ] FormatStringTest.HandlesBasicFormatting
19: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms)
19: [ RUN ] FormatStringTest.HandlesLongStrings
19: [ OK ] FormatStringTest.HandlesLongStrings (0 ms)
19: [----------] 2 tests from FormatStringTest (0 ms total)
19:
19: [----------] 1 test from StringFormatterTest
19: [ RUN ] StringFormatterTest.HandlesBasicFormatting
19: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms)
19: [----------] 1 test from StringFormatterTest (0 ms total)
19:
19: [----------] 1 test from formatAndJoinTest
19: [ RUN ] formatAndJoinTest.Works
19: [ OK ] formatAndJoinTest.Works (0 ms)
19: [----------] 1 test from formatAndJoinTest (0 ms total)
19:
19: [----------] 1 test from JoinStringsTest
19: [ RUN ] JoinStringsTest.Works
19: [ OK ] JoinStringsTest.Works (0 ms)
19: [----------] 1 test from JoinStringsTest (0 ms total)
19:
19: [----------] 6 tests from ReplaceAllTest
19: [ RUN ] ReplaceAllTest.HandlesEmptyStrings
19: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesNoMatches
19: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds
19: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesMultipleMatches
19: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesWordBoundaries
19: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms)
19: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches
19: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms)
19: [----------] 6 tests from ReplaceAllTest (0 ms total)
19:
19: [----------] 10 tests from TextLineWrapperTest
19: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings
19: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace
19: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines
19: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms)
19: [ RUN ] TextLineWrapperTest.WrapsCorrectly
19: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms)
19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks
19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesIndent
19: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines
19: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesHangingIndent
19: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms)
19: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter
19: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms)
19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace
19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms)
19: [----------] 10 tests from TextLineWrapperTest (1 ms total)
19:
19: [----------] 6 tests from TextWriterTest
19: [ RUN ] TextWriterTest.WritesLines
19: [ OK ] TextWriterTest.WritesLines (1 ms)
19: [ RUN ] TextWriterTest.WritesLinesInParts
19: [ OK ] TextWriterTest.WritesLinesInParts (0 ms)
19: [ RUN ] TextWriterTest.WritesWrappedLines
19: [ OK ] TextWriterTest.WritesWrappedLines (0 ms)
19: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper
19: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms)
19: [ RUN ] TextWriterTest.TracksNewlines
19: [ OK ] TextWriterTest.TracksNewlines (0 ms)
19: [ RUN ] TextWriterTest.PreservesTrailingWhitespace
19: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms)
19: [----------] 6 tests from TextWriterTest (2 ms total)
19:
19: [----------] 1 test from TypeTraitsTest
19: [ RUN ] TypeTraitsTest.IsIntegralConstant
19: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms)
19: [----------] 1 test from TypeTraitsTest (0 ms total)
19:
19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms)
19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0
19: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms)
19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total)
19:
19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms)
19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1
19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms)
19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total)
19:
19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (0 ms)
19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1
19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms)
19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (1 ms total)
19:
19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (2 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (1 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms)
19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2
19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms)
19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (5 ms total)
19:
19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (1 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (1 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms)
19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6
19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms)
19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (4 ms total)
19:
19: [----------] Global test environment tear-down
19: [==========] 307 tests from 49 test cases ran. (35 ms total)
19: [ PASSED ] 307 tests.
19/24 Test #19: UtilityUnitTests ................. Passed 0.09 sec
test 20
Start 20: FileIOTests
20: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/fileio-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/FileIOTests.xml"
20: Test timeout computed to be: 30
20: [==========] Running 15 tests from 3 test cases.
20: [----------] Global test environment set-up.
20: [----------] 9 tests from ReadTest
20: [ RUN ] ReadTest.get_eint_ReadsInteger
20: [ OK ] ReadTest.get_eint_ReadsInteger (0 ms)
20: [ RUN ] ReadTest.get_eint_WarnsAboutFloat
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side '0.8' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms)
20: [ RUN ] ReadTest.get_eint_WarnsAboutString
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side 'hello' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms)
20: [ RUN ] ReadTest.get_eint64_ReadsInteger
20: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms)
20: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side '0.8' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms)
20: [ RUN ] ReadTest.get_eint64_WarnsAboutString
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side 'hello' for parameter 'test' in parameter file is not an
20: integer value
20:
20:
20: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms)
20: [ RUN ] ReadTest.get_ereal_ReadsInteger
20: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms)
20: [ RUN ] ReadTest.get_ereal_ReadsFloat
20: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms)
20: [ RUN ] ReadTest.get_ereal_WarnsAboutString
20:
20: ERROR 1 [file unknown, line 0]:
20: Right hand side 'hello' for parameter 'test' in parameter file is not a
20: real value
20:
20:
20: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms)
20: [----------] 9 tests from ReadTest (1 ms total)
20:
20: [----------] 2 tests from TngTest
20: [ RUN ] TngTest.CanOpenTngFile
20: [ OK ] TngTest.CanOpenTngFile (0 ms)
20: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal
20: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms)
20: [----------] 2 tests from TngTest (0 ms total)
20:
20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms)
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms)
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms)
20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3
20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms)
20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (7 ms total)
20:
20: [----------] Global test environment tear-down
20: [==========] 15 tests from 3 test cases ran. (8 ms total)
20: [ PASSED ] 15 tests.
20/24 Test #20: FileIOTests ...................... Passed 0.02 sec
test 21
Start 21: PullTest
21: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/pull-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/PullTest.xml"
21: Test timeout computed to be: 30
21: [==========] Running 5 tests from 1 test case.
21: [----------] Global test environment set-up.
21: [----------] 5 tests from PullTest
21: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox
21: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox
21: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXyzTricBox
21: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXyzLongBox
21: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms)
21: [ RUN ] PullTest.MaxPullDistanceXySkewedBox
21: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms)
21: [----------] 5 tests from PullTest (0 ms total)
21:
21: [----------] Global test environment tear-down
21: [==========] 5 tests from 1 test case ran. (1 ms total)
21: [ PASSED ] 5 tests.
21/24 Test #21: PullTest ......................... Passed 0.01 sec
test 22
Start 22: AwhTest
22: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/awh-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/AwhTest.xml"
22: Test timeout computed to be: 30
22: [==========] Running 12 tests from 4 test cases.
22: [----------] Global test environment set-up.
22: [----------] 1 test from BiasTest
22: [ RUN ] BiasTest.DetectsCovering
22: [ OK ] BiasTest.DetectsCovering (1 ms)
22: [----------] 1 test from BiasTest (1 ms total)
22:
22: [----------] 1 test from gridTest
22: [ RUN ] gridTest.neighborhood
22: [ OK ] gridTest.neighborhood (2 ms)
22: [----------] 1 test from gridTest (2 ms total)
22:
22: [----------] 8 tests from WithParameters/BiasTest
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms)
22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7
22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms)
22: [----------] 8 tests from WithParameters/BiasTest (6 ms total)
22:
22: [----------] 2 tests from WithParameters/BiasStateTest
22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0
22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms)
22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1
22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms)
22: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total)
22:
22: [----------] Global test environment tear-down
22: [==========] 12 tests from 4 test cases ran. (11 ms total)
22: [ PASSED ] 12 tests.
22/24 Test #22: AwhTest .......................... Passed 0.02 sec
test 23
Start 23: SimdUnitTests
23: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/simd-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/SimdUnitTests.xml"
23: Test timeout computed to be: 30
23: [==========] Running 86 tests from 3 test cases.
23: [----------] Global test environment set-up.
23: [----------] 41 tests from SimdScalarTest
23: [ RUN ] SimdScalarTest.load
23: [ OK ] SimdScalarTest.load (0 ms)
23: [ RUN ] SimdScalarTest.loadU
23: [ OK ] SimdScalarTest.loadU (0 ms)
23: [ RUN ] SimdScalarTest.store
23: [ OK ] SimdScalarTest.store (0 ms)
23: [ RUN ] SimdScalarTest.storeU
23: [ OK ] SimdScalarTest.storeU (0 ms)
23: [ RUN ] SimdScalarTest.setZero
23: [ OK ] SimdScalarTest.setZero (0 ms)
23: [ RUN ] SimdScalarTest.andNot
23: [ OK ] SimdScalarTest.andNot (0 ms)
23: [ RUN ] SimdScalarTest.fma
23: [ OK ] SimdScalarTest.fma (0 ms)
23: [ RUN ] SimdScalarTest.fms
23: [ OK ] SimdScalarTest.fms (0 ms)
23: [ RUN ] SimdScalarTest.fnma
23: [ OK ] SimdScalarTest.fnma (0 ms)
23: [ RUN ] SimdScalarTest.fnms
23: [ OK ] SimdScalarTest.fnms (0 ms)
23: [ RUN ] SimdScalarTest.maskAdd
23: [ OK ] SimdScalarTest.maskAdd (0 ms)
23: [ RUN ] SimdScalarTest.maskzMul
23: [ OK ] SimdScalarTest.maskzMul (0 ms)
23: [ RUN ] SimdScalarTest.maskzFma
23: [ OK ] SimdScalarTest.maskzFma (0 ms)
23: [ RUN ] SimdScalarTest.abs
23: [ OK ] SimdScalarTest.abs (0 ms)
23: [ RUN ] SimdScalarTest.max
23: [ OK ] SimdScalarTest.max (0 ms)
23: [ RUN ] SimdScalarTest.min
23: [ OK ] SimdScalarTest.min (0 ms)
23: [ RUN ] SimdScalarTest.round
23: [ OK ] SimdScalarTest.round (0 ms)
23: [ RUN ] SimdScalarTest.trunc
23: [ OK ] SimdScalarTest.trunc (0 ms)
23: [ RUN ] SimdScalarTest.reduce
23: [ OK ] SimdScalarTest.reduce (0 ms)
23: [ RUN ] SimdScalarTest.testBits
23: [ OK ] SimdScalarTest.testBits (0 ms)
23: [ RUN ] SimdScalarTest.anyTrue
23: [ OK ] SimdScalarTest.anyTrue (0 ms)
23: [ RUN ] SimdScalarTest.selectByMask
23: [ OK ] SimdScalarTest.selectByMask (0 ms)
23: [ RUN ] SimdScalarTest.selectByNotMask
23: [ OK ] SimdScalarTest.selectByNotMask (0 ms)
23: [ RUN ] SimdScalarTest.blend
23: [ OK ] SimdScalarTest.blend (0 ms)
23: [ RUN ] SimdScalarTest.cvtR2I
23: [ OK ] SimdScalarTest.cvtR2I (1 ms)
23: [ RUN ] SimdScalarTest.cvttR2I
23: [ OK ] SimdScalarTest.cvttR2I (0 ms)
23: [ RUN ] SimdScalarTest.cvtI2R
23: [ OK ] SimdScalarTest.cvtI2R (0 ms)
23: [ RUN ] SimdScalarTest.cvtF2D
23: [ OK ] SimdScalarTest.cvtF2D (0 ms)
23: [ RUN ] SimdScalarTest.cvtD2D
23: [ OK ] SimdScalarTest.cvtD2D (0 ms)
23: [ RUN ] SimdScalarTest.loadI
23: [ OK ] SimdScalarTest.loadI (0 ms)
23: [ RUN ] SimdScalarTest.loadUI
23: [ OK ] SimdScalarTest.loadUI (0 ms)
23: [ RUN ] SimdScalarTest.storeI
23: [ OK ] SimdScalarTest.storeI (0 ms)
23: [ RUN ] SimdScalarTest.storeUI
23: [ OK ] SimdScalarTest.storeUI (0 ms)
23: [ RUN ] SimdScalarTest.andNotI
23: [ OK ] SimdScalarTest.andNotI (0 ms)
23: [ RUN ] SimdScalarTest.testBitsI
23: [ OK ] SimdScalarTest.testBitsI (0 ms)
23: [ RUN ] SimdScalarTest.selectByMaskI
23: [ OK ] SimdScalarTest.selectByMaskI (0 ms)
23: [ RUN ] SimdScalarTest.selectByNotMaskI
23: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms)
23: [ RUN ] SimdScalarTest.blendI
23: [ OK ] SimdScalarTest.blendI (0 ms)
23: [ RUN ] SimdScalarTest.cvtB2IB
23: [ OK ] SimdScalarTest.cvtB2IB (0 ms)
23: [ RUN ] SimdScalarTest.cvtIB2B
23: [ OK ] SimdScalarTest.cvtIB2B (0 ms)
23: [ RUN ] SimdScalarTest.expandScalarsToTriplets
23: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms)
23: [----------] 41 tests from SimdScalarTest (2 ms total)
23:
23: [----------] 8 tests from SimdScalarUtilTest
23: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU
23: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms)
23: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU
23: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms)
23: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU
23: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms)
23: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose
23: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms)
23: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum
23: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms)
23: [----------] 8 tests from SimdScalarUtilTest (1 ms total)
23:
23: [----------] 37 tests from SimdScalarMathTest
23: [ RUN ] SimdScalarMathTest.copysign
23: [ OK ] SimdScalarMathTest.copysign (0 ms)
23: [ RUN ] SimdScalarMathTest.invsqrtPair
23: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms)
23: [ RUN ] SimdScalarMathTest.inv
23: [ OK ] SimdScalarMathTest.inv (0 ms)
23: [ RUN ] SimdScalarMathTest.maskzInvsqrt
23: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms)
23: [ RUN ] SimdScalarMathTest.log
23: [ OK ] SimdScalarMathTest.log (0 ms)
23: [ RUN ] SimdScalarMathTest.exp2
23: [ OK ] SimdScalarMathTest.exp2 (0 ms)
23: [ RUN ] SimdScalarMathTest.exp
23: [ OK ] SimdScalarMathTest.exp (0 ms)
23: [ RUN ] SimdScalarMathTest.erf
23: [ OK ] SimdScalarMathTest.erf (0 ms)
23: [ RUN ] SimdScalarMathTest.erfc
23: [ OK ] SimdScalarMathTest.erfc (0 ms)
23: [ RUN ] SimdScalarMathTest.sincos
23: [ OK ] SimdScalarMathTest.sincos (0 ms)
23: [ RUN ] SimdScalarMathTest.sin
23: [ OK ] SimdScalarMathTest.sin (0 ms)
23: [ RUN ] SimdScalarMathTest.cos
23: [ OK ] SimdScalarMathTest.cos (0 ms)
23: [ RUN ] SimdScalarMathTest.tan
23: [ OK ] SimdScalarMathTest.tan (0 ms)
23: [ RUN ] SimdScalarMathTest.asin
23: [ OK ] SimdScalarMathTest.asin (0 ms)
23: [ RUN ] SimdScalarMathTest.acos
23: [ OK ] SimdScalarMathTest.acos (0 ms)
23: [ RUN ] SimdScalarMathTest.atan
23: [ OK ] SimdScalarMathTest.atan (0 ms)
23: [ RUN ] SimdScalarMathTest.atan2
23: [ OK ] SimdScalarMathTest.atan2 (0 ms)
23: [ RUN ] SimdScalarMathTest.pmeForceCorrection
23: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms)
23: [ RUN ] SimdScalarMathTest.pmePotentialCorrection
23: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms)
23: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy
23: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.invSingleAccuracy
23: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy
23: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.logSingleAccuracy
23: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy
23: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.expSingleAccuracy
23: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.erfSingleAccuracy
23: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy
23: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy
23: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.sinSingleAccuracy
23: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.cosSingleAccuracy
23: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.tanSingleAccuracy
23: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.asinSingleAccuracy
23: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.acosSingleAccuracy
23: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.atanSingleAccuracy
23: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy
23: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy
23: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms)
23: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy
23: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms)
23: [----------] 37 tests from SimdScalarMathTest (1 ms total)
23:
23: [----------] Global test environment tear-down
23: [==========] 86 tests from 3 test cases ran. (4 ms total)
23: [ PASSED ] 86 tests.
23/24 Test #23: SimdUnitTests .................... Passed 0.02 sec
test 24
Start 24: CompatibilityHelpersTests
24: Test command: /<<PKGBUILDDIR>>/build/mpich/bin/compat-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/mpich/Testing/Temporary/CompatibilityHelpersTests.xml"
24: Test timeout computed to be: 30
24: [==========] Running 1 test from 1 test case.
24: [----------] Global test environment set-up.
24: [----------] 1 test from CompatibilityHelper
24: [ RUN ] CompatibilityHelper.MakeUniqueCompiles
24: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms)
24: [----------] 1 test from CompatibilityHelper (0 ms total)
24:
24: [----------] Global test environment tear-down
24: [==========] 1 test from 1 test case ran. (0 ms total)
24: [ PASSED ] 1 test.
24/24 Test #24: CompatibilityHelpersTests ........ Passed 0.01 sec
92% tests passed, 2 tests failed out of 24
Label Time Summary:
GTest = 1.80 sec (24 tests)
MpiTest = 0.12 sec (2 tests)
UnitTest = 1.80 sec (24 tests)
Total Test time (real) = 1.84 sec
The following tests FAILED:
2 - TestUtilsMpiUnitTests (Failed)
13 - MdrunUtilityMpiUnitTests (Failed)
Errors while running CTest
debian/rules:148: recipe for target 'build-mpich' failed
make: *** [build-mpich] Error 8
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2018-01-26T13:34:38Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 2429484
Build-Time: 3106
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 346
Job: gromacs_2018-2
Machine Architecture: armhf
Package: gromacs
Package-Time: 3472
Source-Version: 2018-2
Space: 2429484
Status: attempted
Version: 2018-2
--------------------------------------------------------------------------------
Finished at 2018-01-26T13:34:38Z
Build needed 00:57:52, 2429484k disk space