gff2aplot →
2.0-9 →
armhf → 2017-11-19 08:00:38
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| gff2aplot 2.0-9 (armhf) Sun, 19 Nov 2017 07:58:40 +0000 |
+==============================================================================+
Package: gff2aplot
Version: 2.0-9
Source Version: 2.0-9
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-83bb9c0a-6696-4643-899a-b898b74f4900' with '<<CHROOT>>'
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| Update chroot |
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Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.2 MB]
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| Fetch source files |
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Check APT
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Download source files with APT
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Reading package lists...
NOTICE: 'gff2aplot' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/gff2aplot.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/gff2aplot.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 341 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main gff2aplot 2.0-9 (dsc) [2014 B]
Get:2 http://172.17.0.1/private buster-staging/main gff2aplot 2.0-9 (tar) [328 kB]
Get:3 http://172.17.0.1/private buster-staging/main gff2aplot 2.0-9 (diff) [10.4 kB]
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I: NOTICE: Log filtering will replace 'build/gff2aplot-WR7Lsj/gff2aplot-2.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gff2aplot-WR7Lsj' with '<<BUILDDIR>>'
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| Install build-essential |
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Setup apt archive
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dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-cT26Rg/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
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gpg: keybox '/<<BUILDDIR>>/resolver-cT26Rg/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-cT26Rg/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
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gpg: using "Sbuild Signer" as default secret key for signing
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Install core build dependencies (apt-based resolver)
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The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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| Install package build dependencies |
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Setup apt archive
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Merged Build-Depends: debhelper (>= 10)
Filtered Build-Depends: debhelper (>= 10)
dpkg-deb: building package 'sbuild-build-depends-gff2aplot-dummy' in '/<<BUILDDIR>>/resolver-cT26Rg/apt_archive/sbuild-build-depends-gff2aplot-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-gff2aplot-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
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Install gff2aplot build dependencies (apt-based resolver)
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4
man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4
man-db po-debconf sbuild-build-depends-gff2aplot-dummy
0 upgraded, 30 newly installed, 0 to remove and 48 not upgraded.
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Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
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Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
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Get:17 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
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Get:23 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
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Get:27 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29.1-6+rpi1 dpkg-dev_1.19.0.4 g++-7_7.2.0-12 gcc-7_7.2.0-12 libc6-dev_2.24-17 libstdc++-7-dev_7.2.0-12 libstdc++6_7.2.0-12 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha3 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1+nmu1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-6+rpi1 binutils-arm-linux-gnueabihf_2.29.1-6+rpi1 binutils-common_2.29.1-6+rpi1 bsdmainutils_9.0.14 bsdutils_1:2.30.2-0.1 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-12 dash_0.5.8-2.5 debconf_1.5.64 debhelper_10.10.5 debianutils_4.8.2 dh-autoreconf_15 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.1-5 dmsetup_2:1.02.142-1 dpkg_1.19.0.4 dpkg-dev_1.19.0.4 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 e2fsprogs-l10n_1.43.7-1 fakeroot_1.22-1 fdisk_2.30.2-0.1 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.2.0-1d1 g++-7_7.2.0-12 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-12 gcc-7-base_7.2.0-12 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.1-5 gnupg-agent_2.2.1-5 gnupg-l10n_2.2.1-5 gnupg-utils_2.2.1-5 gpg_2.2.1-5 gpg-agent_2.2.1-5 gpg-wks-client_2.2.1-5 gpg-wks-server_2.2.1-5 gpgconf_2.2.1-5 gpgsm_2.2.1-5 gpgv_2.2.1-5 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.1-2 libapt-pkg5.0_1.6~alpha3 libarchive-zip-perl_1.59-1 libasan4_7.2.0-12 libassuan0_2.4.3-3 libatomic1_7.2.0-12 libattr1_1:2.4.47-2 libaudit-common_1:2.8.1-1 libaudit1_1:2.8.1-1 libbinutils_2.29.1-6+rpi1 libblkid1_2.30.2-0.1 libbsd0_0.8.6-3 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-17 libc-dev-bin_2.24-17 libc6_2.24-17 libc6-dev_2.24-17 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.1 libcc1-0_7.2.0-12 libcilkrts5_7.2.0-12 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.11.22-1 libdebconfclient0_0.232 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.19.0.4 libdrm-common_2.4.84-2+rpi1 libdrm2_2.4.84-2+rpi1 libfakeroot_1.22-1 libfdisk1_2.30.2-0.1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-12 libgcc1_1:7.2.0-12 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libglib2.0-0_2.54.1-1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.16-1 libgomp1_7.2.0-12 libgpg-error0_1.27-4 libhogweed4_3.3-2 libicu57_57.1-8 libidn11_1.33-2 libidn2-0_2.0.2-5 libip4tc0_1.6.1-2+b1 libisl15_0.18-1 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.2-0.1 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libncurses5_6.0+20170902-1 libncursesw5_6.0+20170902-1 libnettle6_3.3-2 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.1-2 libpipeline1_1.4.2-1 libplymouth4_0.9.3-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsmartcols1_2.30.2-0.1 libsqlite3-0_3.20.1-2 libss2_1.43.7-1 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-12 libstdc++6_7.2.0-12 libsystemd0_235-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170902-1 libtool_2.4.6-2 libubsan0_7.2.0-12 libudev1_235-2 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1 libxml2_2.9.4+dfsg1-5 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.30.2-0.1 mountall_2.54 multiarch-support_2.24-17 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 openssl_1.1.0f-5 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-2 perl-base_5.26.1-2 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-2 pinentry-curses_1.0.0-3 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gff2aplot-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_235-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017c-1 udev_235-2 util-linux_2.30.2-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 14 10:22:05 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./gff2aplot_2.0-9.dsc
dpkg-source: info: extracting gff2aplot in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking gff2aplot_2.0.orig.tar.gz
dpkg-source: info: unpacking gff2aplot_2.0-9.debian.tar.xz
dpkg-source: info: applying 02-blat2gff.diff
dpkg-source: info: applying 03-parseblast.diff
dpkg-source: info: applying use-dpkg-buildflags.patch
dpkg-source: info: applying mayhem.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-83bb9c0a-6696-4643-899a-b898b74f4900
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package gff2aplot
dpkg-buildpackage: info: source version 2.0-9
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build gff2aplot-2.0
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f src/ali2gff/ali2gff bin/ali2gff
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
###
### RUNNING MAKEFILE
###
### Finishing PERL script from "src/gff2aplot.pl" -> "bin/gff2aplot.pl"
### Sun Nov 19 08:00:24 UTC 2017 -- buildd
###
### Finishing PERL script from "src/parseblast.pl" -> "bin/parseblast.pl"
### Finishing PERL script from "src/blat2gff.pl" -> "bin/blat2gff.pl"
### Finishing PERL script from "src/sim2gff.pl" -> "bin/sim2gff.pl"
### Making ALI2GFF...
###
### MAKEFILE DONE...
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/ali2gff'
###
ali2gff.c: In function 'main':
ali2gff.c:88:8: warning: variable 'ptr' set but not used [-Wunused-but-set-variable]
char *ptr;
^~~
ali2gff.c: In function 'processMumfile':
ali2gff.c:421:30: warning: 'fyb' may be used uninitialized in this function [-Wmaybe-uninitialized]
unsigned long int fxb, fxe, fyb, fye; // start and end positions of gaps resp. fragments of gaps
^~~
ali2gff.c:732:12: warning: 'score' may be used uninitialized in this function [-Wmaybe-uninitialized]
score = (score - errCount)/score; // match percentage
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
ali2gff.c:421:20: warning: 'fxb' may be used uninitialized in this function [-Wmaybe-uninitialized]
unsigned long int fxb, fxe, fyb, fye; // start and end positions of gaps resp. fragments of gaps
^~~
ali2gff.c: In function 'processSimfile':
ali2gff.c:1073:15: warning: 'yrev' may be used uninitialized in this function [-Wmaybe-uninitialized]
ye = yrev-ye;
~~~~^~~
ali2gff.c:1064:41: warning: 'yseqLen_4' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (!opt_i || ((xe - xb < xseqLen_4) && (ye - yb < yseqLen_4))) {
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
ali2gff.c:1064:15: warning: 'xseqLen_4' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (!opt_i || ((xe - xb < xseqLen_4) && (ye - yb < yseqLen_4))) {
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/ali2gff'
'./src/ali2gff/ali2gff' -> './bin/ali2gff'
mode of 'bin/gff2aplot.pl' changed from 0664 (rw-rw-r--) to 0755 (rwxr-xr-x)
mode of 'bin/parseblast.pl' changed from 0664 (rw-rw-r--) to 0755 (rwxr-xr-x)
mode of 'bin/blat2gff.pl' changed from 0664 (rw-rw-r--) to 0755 (rwxr-xr-x)
mode of 'bin/sim2gff.pl' changed from 0664 (rw-rw-r--) to 0755 (rwxr-xr-x)
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
make -j4 test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
### SORRY !!! Tests were not implemented yet...
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_installdirs -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for script in `find bin -name "*.pl"` ; do mv $script bin/`basename $script .pl` ; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/gff2aplot/usr/bin/ali2gff was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'gff2aplot-dbgsym' in '../gff2aplot-dbgsym_2.0-9_armhf.deb'.
dpkg-deb: building package 'gff2aplot' in '../gff2aplot_2.0-9_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../gff2aplot_2.0-9_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build gff2aplot-2.0
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-11-19T08:00:33Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
gff2aplot_2.0-9_armhf.changes:
------------------------------
Format: 1.8
Date: Tue, 14 Nov 2017 11:15:53 +0100
Source: gff2aplot
Binary: gff2aplot
Architecture: armhf
Version: 2.0-9
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
gff2aplot - pair-wise alignment-plots for genomic sequences in PostScript
Changes:
gff2aplot (2.0-9) unstable; urgency=medium
.
* Moved packaging from SVN to Git
* debhelper 10
* Standards-Version: 4.1.1
* Remove unused lintian override
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Checksums-Sha256:
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Files:
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6bb97a9164a3889dc4099d4eef46194c 4331 science optional gff2aplot_2.0-9_armhf.buildinfo
1c0eae0f7c4313ee5ed7aa03ee868486 307540 science optional gff2aplot_2.0-9_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
gff2aplot-dbgsym_2.0-9_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 20996 bytes: control archive=536 bytes.
373 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: gff2aplot-dbgsym
Source: gff2aplot
Version: 2.0-9
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 35
Depends: gff2aplot (= 2.0-9)
Section: debug
Priority: optional
Description: debug symbols for gff2aplot
Build-Ids: 382e14a1a17d3c38ec701a0c12b0496a4f1f04aa
drwxr-xr-x root/root 0 2017-11-14 10:15 ./
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/lib/
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/lib/debug/.build-id/38/
-rw-r--r-- root/root 24664 2017-11-14 10:15 ./usr/lib/debug/.build-id/38/2e14a1a17d3c38ec701a0c12b0496a4f1f04aa.debug
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/share/
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-11-14 10:15 ./usr/share/doc/gff2aplot-dbgsym -> gff2aplot
gff2aplot_2.0-9_armhf.deb
-------------------------
new Debian package, version 2.0.
size 307540 bytes: control archive=3148 bytes.
2786 bytes, 48 lines control
5009 bytes, 58 lines md5sums
Package: gff2aplot
Version: 2.0-9
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 614
Depends: libc6 (>= 2.7), perl:any
Suggests: postscript-viewer, gff2ps
Section: science
Priority: optional
Homepage: http://genome.imim.es/software/gfftools/GFF2APLOT.html
Description: pair-wise alignment-plots for genomic sequences in PostScript
A program to visualize the alignment of two genomic sequences together with
their annotations. From GFF-format input files it produces PostScript figures
for that alignment.
The following menu lists many features of gff2aplot:
* Comprehensive alignment plots for any GFF-feature. Attributes are defined
separately so you can modify only whatsoever attributes for a given file or
share same customization across different data-sets.
* All parameters are set by default within the program, but it can be also
fully configured via gff2ps-like flexible customization files. Program can
handle several of such files, summarizing all the settings before producing
the corresponding figure. Moreover, all customization parameters can be set
via command-line switches, which allows users to play with those parameters
before adding any to a customization file.
* Source order is taken from input files, if you swap file order you can
visualize alignment and its annotation with the new input arrangement.
* All alignment scores can be visualized in a PiP box below gff2aplot area,
using grey-color scale, user-defined color scale or score-dependent
gradients.
* Scalable fonts, which can also be chosen among the basic PostScript default
fonts. Feature and group labels can be rotated to improve readability in
both annotation axes.
* The program is still defined as a Unix filter so it can handle data from
files, redirections and pipes, writing output to standard-output and
warnings to standard error.
* gff2aplot is able to manage many physical page formats (from A0 to A10, and
more -see available page sizes in its manual-), including user-defined ones.
This allows, for instance, the generation of poster size genomic maps, or
the use of a continuous-paper supporting plotting device, either in portrait
or landscape.
* You can draw different alignments on same alignment plot and distinguish
them by using different colors for each.
* Shape dictionary has been expanded, so that further feature shapes are now
available (see manual).
* Annotation projections through alignment plots (so called ribbons) emulate
transparencies via complementary color fill patterns. This feature allows
one to show color pseudo-blending when horizontal and vertical ribbons
overlap.
drwxr-xr-x root/root 0 2017-11-14 10:15 ./
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/bin/
-rwxr-xr-x root/root 24108 2017-11-14 10:15 ./usr/bin/ali2gff
-rwxr-xr-x root/root 5381 2017-11-14 10:15 ./usr/bin/blat2gff
-rwxr-xr-x root/root 201809 2017-11-14 10:15 ./usr/bin/gff2aplot
-rwxr-xr-x root/root 36734 2017-11-14 10:15 ./usr/bin/parseblast
-rwxr-xr-x root/root 10232 2017-11-14 10:15 ./usr/bin/sim2gff
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/share/
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/share/doc/gff2aplot/
-rw-r--r-- root/root 66824 2017-11-14 10:15 ./usr/share/doc/gff2aplot/GFF2APLOT_MANUAL.ps.gz
-rw-r--r-- root/root 2211 2003-06-05 15:45 ./usr/share/doc/gff2aplot/README.gz
-rw-r--r-- root/root 1167 2017-11-14 10:15 ./usr/share/doc/gff2aplot/changelog.Debian.gz
-rw-r--r-- root/root 1422 2017-11-14 10:15 ./usr/share/doc/gff2aplot/copyright
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/share/doc/gff2aplot/examples/
drwxr-xr-x root/root 0 2017-11-14 10:15 ./usr/share/doc/gff2aplot/examples/mhcregion/
-rw-r--r-- root/root 2984 2003-06-05 15:45 ./usr/share/doc/gff2aplot/examples/mhcregion/README.gz
-rw-r--r-- root/root 12273 2003-06-05 15:45 ./usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.gff.gz
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 3508
Build-Time: 12
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 86
Job: gff2aplot_2.0-9
Machine Architecture: armhf
Package: gff2aplot
Package-Time: 113
Source-Version: 2.0-9
Space: 3508
Status: successful
Version: 2.0-9
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Finished at 2017-11-19T08:00:33Z
Build needed 00:01:53, 3508k disk space