gerris →
20131206+dfsg-8 →
armhf → 2016-05-29 01:51:36
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-02
+==============================================================================+
| gerris 20131206+dfsg-8 (armhf) 29 May 2016 01:11 |
+==============================================================================+
Package: gerris
Version: 20131206+dfsg-8
Source Version: 20131206+dfsg-8
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/gerris-TACbfu/gerris-20131206+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gerris-TACbfu' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-49bf9cb9-8e2c-4367-bb1d-efcf3038a054' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9003 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.0 MB]
Fetched 20.0 MB in 21s (926 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'gerris' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-science/packages/gerris.git
Please use:
git clone https://anonscm.debian.org/git/debian-science/packages/gerris.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2853 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main gerris 20131206+dfsg-8 (dsc) [2331 B]
Get:2 http://172.17.0.1/private stretch-staging/main gerris 20131206+dfsg-8 (tar) [2834 kB]
Get:3 http://172.17.0.1/private stretch-staging/main gerris 20131206+dfsg-8 (diff) [16.4 kB]
Fetched 2853 kB in 0s (10.1 MB/s)
Download complete and in download only mode
Check architectures
-------------------
Check dependencies
------------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-e4iEdQ/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-e4iEdQ/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-e4iEdQ/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-e4iEdQ/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-e4iEdQ/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-e4iEdQ/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-e4iEdQ/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-e4iEdQ/apt_archive ./ Sources [194 B]
Get:5 file:/<<BUILDDIR>>/resolver-e4iEdQ/apt_archive ./ Packages [506 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-e4iEdQ/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 28 not upgraded.
Need to get 0 B/762 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-e4iEdQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [762 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 13638 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: autotools-dev, debhelper (>= 9), dh-autoreconf, gfortran, libglib2.0-dev, libgsl0-dev, libgts-bin (>= 0.7.6+darcs121130-1.2), libgts-dev (>= 0.7.6+darcs121130-1.2), libnetcdf-dev, mpi-default-dev, python
Filtered Build-Depends: autotools-dev, debhelper (>= 9), dh-autoreconf, gfortran, libglib2.0-dev, libgsl0-dev, libgts-bin (>= 0.7.6+darcs121130-1.2), libgts-dev (>= 0.7.6+darcs121130-1.2), libnetcdf-dev, mpi-default-dev, python
dpkg-deb: building package 'sbuild-build-depends-gerris-dummy' in '/<<BUILDDIR>>/resolver-5pYlEx/apt_archive/sbuild-build-depends-gerris-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-5pYlEx/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-5pYlEx/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-5pYlEx/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-5pYlEx/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-5pYlEx/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-5pYlEx/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-5pYlEx/apt_archive ./ Sources [275 B]
Get:5 file:/<<BUILDDIR>>/resolver-5pYlEx/apt_archive ./ Packages [591 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-5pYlEx/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install gerris build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-5 debhelper
dh-autoreconf dh-strip-nondeterminism file g++-5 gcc-5 gcc-5-base gettext
gettext-base gfortran gfortran-5 groff-base hdf5-helpers intltool-debian
libaec-dev libaec0 libarchive-zip-perl libasan2 libbsd0 libcroco3
libcurl3-gnutls libcurl4-gnutls-dev libelf1 libexpat1 libffi6
libfile-stripnondeterminism-perl libgcc-5-dev libgfortran-5-dev libgfortran3
libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgnutls30
libgsl-dev libgsl2 libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgts-dev
libhdf5-10 libhdf5-cpp-11 libhdf5-dev libhogweed4 libhwloc-dev
libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu55 libidn11
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libldap-2.4-2 libltdl-dev libltdl7 libmagic1
libnetcdf-dev libnetcdf11 libnettle6 libnghttp2-14 libnl-3-200
libnl-route-3-200 libopenmpi-dev libopenmpi1.10 libp11-kit0 libpciaccess0
libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librtmp1
libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1
libssl1.0.2 libstdc++-5-dev libsz2 libtasn1-6 libtool libunistring0 libxml2
m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-common
pkg-config po-debconf python python-minimal python2.7 python2.7-minimal
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-5-locales dh-make gcc-5-doc libstdc++6-5-dbg libgcc1-dbg
libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg
libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg
gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-5-doc
libgfortran3-dbg groff libcurl4-doc libcurl3-dbg libgnutls28-dev
libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
libglib2.0-doc gnutls-bin gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info
| gsl-ref-html krb5-doc krb5-user libgts-doc libhdf5-doc
libhwloc-contrib-plugins libtool-doc netcdf-bin netcdf-doc opennmpi-doc
pciutils libstdc++-5-doc gcj-jdk less www-browser opencl-icd
libmail-box-perl python-doc python-tk python2.7-doc binfmt-support
Recommended packages:
curl | wget | lynx-cur ca-certificates shared-mime-info xdg-user-dirs
krb5-locales openmpi-bin libsasl2-modules xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base gfortran
gfortran-5 groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libbsd0 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev
libelf1 libexpat1 libffi6 libfile-stripnondeterminism-perl libgfortran-5-dev
libgfortran3 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
libgnutls30 libgsl-dev libgsl2 libgssapi-krb5-2 libgts-0.7-5 libgts-bin
libgts-dev libhdf5-10 libhdf5-cpp-11 libhdf5-dev libhogweed4 libhwloc-dev
libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu55 libidn11
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libldap-2.4-2 libltdl-dev libltdl7 libmagic1
libnetcdf-dev libnetcdf11 libnettle6 libnghttp2-14 libnl-3-200
libnl-route-3-200 libopenmpi-dev libopenmpi1.10 libp11-kit0 libpciaccess0
libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librtmp1
libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1
libssl1.0.2 libsz2 libtasn1-6 libtool libunistring0 libxml2 m4 man-db
mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-common pkg-config
po-debconf python python-minimal python2.7 python2.7-minimal
sbuild-build-depends-gerris-dummy zlib1g-dev
The following packages will be upgraded:
cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libgcc-5-dev libstdc++-5-dev
7 upgraded, 106 newly installed, 0 to remove and 21 not upgraded.
Need to get 127 MB/127 MB of archives.
After this operation, 265 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-5pYlEx/apt_archive ./ sbuild-build-depends-gerris-dummy 0.invalid.0 [850 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.11-9 [382 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.11-9 [1163 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-1 [40.0 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.1-2 [60.2 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.12.2-1 [464 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2h-1 [889 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.11-9 [1817 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.11-9 [271 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-1 [19.5 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-1 [150 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.48.1-1 [2548 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-1.2 [129 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libpcrecpp0v5 armhf 2:8.38-3.1 [148 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libasan2 armhf 5.3.1-20 [223 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf g++-5 armhf 5.3.1-20 [24.5 MB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf gcc-5 armhf 5.3.1-20 [5291 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf cpp-5 armhf 5.3.1-20 [22.9 MB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libstdc++-5-dev armhf 5.3.1-20 [1430 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libgcc-5-dev armhf 5.3.1-20 [447 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf gcc-5-base armhf 5.3.1-20 [171 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.2-1 [202 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.2-1 [126 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libidn11 armhf 1.32-3 [110 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-3 [93.3 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.8-1 [44.1 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.4.12-1 [733 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.13.2+dfsg-5 [56.6 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.13.2+dfsg-5 [110 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.13.2+dfsg-5 [259 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.13.2+dfsg-5 [130 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-15 [65.6 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-15 [96.7 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.7-2 [424 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.016-1 [6998 B]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.1.1-1+rpi1 [166 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libgfortran-5-dev armhf 5.3.1-20 [182 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf gfortran-5 armhf 5.3.1-20 [23.7 MB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:5.3.1-1+rpi1 [1362 B]
Get:69 http://172.17.0.1/private stretch-staging/main armhf hdf5-helpers armhf 1.8.16+docs-8 [35.3 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libaec0 armhf 0.3.2-1 [19.4 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.10.0-1 [72.2 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.5.0-2.1 [121 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libcurl3-gnutls armhf 7.47.0-1 [244 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libcurl4-gnutls-dev armhf 7.47.0-1 [330 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libelf1 armhf 0.163-5.1 [162 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-data all 2.48.1-1 [2503 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-bin armhf 2.48.1-1 [1625 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libpcre16-3 armhf 2:8.38-3.1 [229 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libpcre32-3 armhf 2:8.38-3.1 [223 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libpcre3-dev armhf 2:8.38-3.1 [556 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf pkg-config armhf 0.29-4 [59.2 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-dev armhf 2.48.1-1 [2783 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libgsl2 armhf 2.1+dfsg-2 [697 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libgsl-dev armhf 2.1+dfsg-2 [812 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libgts-bin armhf 0.7.6+darcs121130-1.2 [47.0 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libgts-dev armhf 0.7.6+darcs121130-1.2 [143 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libsz2 armhf 0.3.2-1 [5836 B]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libhdf5-10 armhf 1.8.16+docs-8 [981 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libhdf5-cpp-11 armhf 1.8.16+docs-8 [115 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.4.2-2 [104 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo-dev armhf 1:1.4.2-2 [413 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libjpeg-dev all 1:1.4.2-2 [51.7 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libaec-dev armhf 0.3.2-1 [17.6 kB]
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Get:97 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-0.1 [42.8 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libltdl-dev armhf 2.4.6-0.1 [159 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf libnetcdf11 armhf 1:4.4.0-2 [285 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libnetcdf-dev armhf 1:4.4.0-2 [74.6 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf libnl-3-200 armhf 3.2.27-1 [53.4 kB]
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Get:103 http://172.17.0.1/private stretch-staging/main armhf libpciaccess0 armhf 0.13.4-1 [47.4 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf libhwloc5 armhf 1.11.3-2+rpi1 [82.5 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf libhwloc-dev armhf 1.11.3-2+rpi1 [135 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf ocl-icd-libopencl1 armhf 2.2.9-1 [34.6 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf libhwloc-plugins armhf 1.11.3-2+rpi1 [14.8 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf libibverbs1 armhf 1.2.0-1 [31.7 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf libibverbs-dev armhf 1.2.0-1 [88.2 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf libopenmpi1.10 armhf 1.10.2-12+rpi1 [1781 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf openmpi-common all 1.10.2-12+rpi1 [141 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf libopenmpi-dev armhf 1.10.2-12+rpi1 [626 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf mpi-default-dev armhf 1.6 [4720 B]
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Preparing to unpack .../libnetcdf11_1%3a4.4.0-2_armhf.deb ...
Unpacking libnetcdf11 (1:4.4.0-2) ...
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Unpacking libnetcdf-dev (1:4.4.0-2) ...
Selecting previously unselected package libnl-3-200:armhf.
Preparing to unpack .../libnl-3-200_3.2.27-1_armhf.deb ...
Unpacking libnl-3-200:armhf (3.2.27-1) ...
Selecting previously unselected package libnl-route-3-200:armhf.
Preparing to unpack .../libnl-route-3-200_3.2.27-1_armhf.deb ...
Unpacking libnl-route-3-200:armhf (3.2.27-1) ...
Selecting previously unselected package libpciaccess0:armhf.
Preparing to unpack .../libpciaccess0_0.13.4-1_armhf.deb ...
Unpacking libpciaccess0:armhf (0.13.4-1) ...
Selecting previously unselected package libhwloc5:armhf.
Preparing to unpack .../libhwloc5_1.11.3-2+rpi1_armhf.deb ...
Unpacking libhwloc5:armhf (1.11.3-2+rpi1) ...
Selecting previously unselected package libhwloc-dev:armhf.
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Unpacking libhwloc-dev:armhf (1.11.3-2+rpi1) ...
Selecting previously unselected package ocl-icd-libopencl1:armhf.
Preparing to unpack .../ocl-icd-libopencl1_2.2.9-1_armhf.deb ...
Unpacking ocl-icd-libopencl1:armhf (2.2.9-1) ...
Selecting previously unselected package libhwloc-plugins.
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Unpacking libhwloc-plugins (1.11.3-2+rpi1) ...
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Unpacking libopenmpi1.10 (1.10.2-12+rpi1) ...
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Preparing to unpack .../openmpi-common_1.10.2-12+rpi1_all.deb ...
Unpacking openmpi-common (1.10.2-12+rpi1) ...
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Unpacking libopenmpi-dev (1.10.2-12+rpi1) ...
Selecting previously unselected package mpi-default-dev.
Preparing to unpack .../mpi-default-dev_1.6_armhf.deb ...
Unpacking mpi-default-dev (1.6) ...
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Preparing to unpack .../sbuild-build-depends-gerris-dummy.deb ...
Unpacking sbuild-build-depends-gerris-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-7) ...
Setting up groff-base (1.22.3-7) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up mime-support (3.60) ...
Setting up libexpat1:armhf (2.1.1-2) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libsqlite3-0:armhf (3.12.2-1) ...
Setting up libssl1.0.2:armhf (1.0.2h-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.11-9) ...
Setting up python2.7 (2.7.11-9) ...
Setting up libpython-stdlib:armhf (2.7.11-1) ...
Setting up python (2.7.11-1) ...
Setting up libglib2.0-0:armhf (2.48.1-1) ...
No schema files found: doing nothing.
Setting up libgts-0.7-5:armhf (0.7.6+darcs121130-1.2) ...
Setting up libpcrecpp0v5:armhf (2:8.38-3.1) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up gcc-5-base:armhf (5.3.1-20) ...
Setting up libasan2:armhf (5.3.1-20) ...
Setting up cpp-5 (5.3.1-20) ...
Setting up libgcc-5-dev:armhf (5.3.1-20) ...
Setting up gcc-5 (5.3.1-20) ...
Setting up libstdc++-5-dev:armhf (5.3.1-20) ...
Setting up g++-5 (5.3.1-20) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up libnettle6:armhf (3.2-1) ...
Setting up libhogweed4:armhf (3.2-1) ...
Setting up libidn11:armhf (1.32-3) ...
Setting up libp11-kit0:armhf (0.23.2-3) ...
Setting up libtasn1-6:armhf (4.8-1) ...
Setting up libgnutls30:armhf (3.4.12-1) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up libkrb5support0:armhf (1.13.2+dfsg-5) ...
Setting up libk5crypto3:armhf (1.13.2+dfsg-5) ...
Setting up libkrb5-3:armhf (1.13.2+dfsg-5) ...
Setting up libgssapi-krb5-2:armhf (1.13.2+dfsg-5) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-15) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-15) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up m4 (1.4.17-5) ...
Setting up autoconf (2.69-10) ...
Setting up autotools-dev (20160430.1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.7-2) ...
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.57-1) ...
Setting up libfile-stripnondeterminism-perl (0.016-1) ...
Setting up libtool (2.4.6-0.1) ...
Setting up libgfortran3:armhf (6.1.1-1+rpi1) ...
Setting up libgfortran-5-dev:armhf (5.3.1-20) ...
Setting up gfortran-5 (5.3.1-20) ...
Setting up gfortran (4:5.3.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up hdf5-helpers (1.8.16+docs-8) ...
Setting up libaec0:armhf (0.3.2-1) ...
Setting up libnghttp2-14:armhf (1.10.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up libssh2-1:armhf (1.5.0-2.1) ...
Setting up libcurl3-gnutls:armhf (7.47.0-1) ...
Setting up libcurl4-gnutls-dev:armhf (7.47.0-1) ...
Setting up libelf1:armhf (0.163-5.1) ...
Setting up libglib2.0-data (2.48.1-1) ...
Setting up libglib2.0-bin (2.48.1-1) ...
Setting up libpcre16-3:armhf (2:8.38-3.1) ...
Setting up libpcre32-3:armhf (2:8.38-3.1) ...
Setting up libpcre3-dev:armhf (2:8.38-3.1) ...
Setting up pkg-config (0.29-4) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libglib2.0-dev (2.48.1-1) ...
Setting up libgsl2:armhf (2.1+dfsg-2) ...
Setting up libgsl-dev (2.1+dfsg-2) ...
Setting up libgts-bin (0.7.6+darcs121130-1.2) ...
Setting up libgts-dev:armhf (0.7.6+darcs121130-1.2) ...
Setting up libsz2:armhf (0.3.2-1) ...
Setting up libhdf5-10:armhf (1.8.16+docs-8) ...
Setting up libhdf5-cpp-11:armhf (1.8.16+docs-8) ...
Setting up libjpeg62-turbo:armhf (1:1.4.2-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.4.2-2) ...
Setting up libjpeg-dev (1:1.4.2-2) ...
Setting up libaec-dev:armhf (0.3.2-1) ...
Setting up libhdf5-dev (1.8.16+docs-8) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libltdl7:armhf (2.4.6-0.1) ...
Setting up libltdl-dev:armhf (2.4.6-0.1) ...
Setting up libnetcdf11 (1:4.4.0-2) ...
Setting up libnetcdf-dev (1:4.4.0-2) ...
Setting up libnl-3-200:armhf (3.2.27-1) ...
Setting up libnl-route-3-200:armhf (3.2.27-1) ...
Setting up libpciaccess0:armhf (0.13.4-1) ...
Setting up libhwloc5:armhf (1.11.3-2+rpi1) ...
Setting up libhwloc-dev:armhf (1.11.3-2+rpi1) ...
Setting up ocl-icd-libopencl1:armhf (2.2.9-1) ...
Setting up libhwloc-plugins (1.11.3-2+rpi1) ...
Setting up libibverbs1 (1.2.0-1) ...
Setting up libibverbs-dev (1.2.0-1) ...
Setting up libopenmpi1.10 (1.10.2-12+rpi1) ...
Setting up openmpi-common (1.10.2-12+rpi1) ...
Setting up libopenmpi-dev (1.10.2-12+rpi1) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up mpi-default-dev (1.6) ...
Setting up dh-autoreconf (12) ...
Setting up debhelper (9.20160403) ...
Setting up sbuild-build-depends-gerris-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.016-1) ...
Processing triggers for libc-bin (2.22-7) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-8 dpkg-dev_1.18.7 g++-5_5.3.1-20 gcc-5_5.3.1-20 libc6-dev_2.22-7 libstdc++-4.9-dev_4.9.3-14 libstdc++-5-dev_5.3.1-20 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.114 apt_1.2.12 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.7-2 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-8 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-20 dash_0.5.8-2.2 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.124-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43~WIP.2016.03.15-2 e2fsprogs_1.43~WIP.2016.03.15-2 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-20 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.3.1-20 gcc-5-base_5.3.1-20 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gfortran_4:5.3.1-1+rpi1 gfortran-5_5.3.1-20 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-1 groff-base_1.22.3-7 gzip_1.6-5 hdf5-helpers_1.8.16+docs-8 hostname_3.17 init_1.33 init-system-helpers_1.33 initscripts_2.88dsf-59.4 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-8+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libaec-dev_0.3.2-1 libaec0_0.3.2-1 libapparmor1_2.10-4 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.2.12 libarchive-zip-perl_1.57-1 libasan1_4.9.3-14 libasan2_5.3.1-20 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libblkid1_2.28-5 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.22-7 libc-dev-bin_2.22-7 libc6_2.22-7 libc6-dev_2.22-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_6.1.1-1+rpi1 libcomerr2_1.43~WIP.2016.03.15-2 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcurl3-gnutls_7.47.0-1 libcurl4-gnutls-dev_7.47.0-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.210 libdevmapper1.02.1_2:1.02.124-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libelf1_0.163-5.1 libexpat1_2.1.1-2 libfakeroot_1.20.2-1 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgc1c2_1:7.4.2-7.4 libgcc-4.9-dev_4.9.3-14 libgcc-5-dev_5.3.1-20 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.0-2 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.3.1-20 libgfortran3_6.1.1-1+rpi1 libglib2.0-0_2.48.1-1 libglib2.0-bin_2.48.1-1 libglib2.0-data_2.48.1-1 libglib2.0-dev_2.48.1-1 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.12-1 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.22-2 libgsl-dev_2.1+dfsg-2 libgsl2_2.1+dfsg-2 libgssapi-krb5-2_1.13.2+dfsg-5 libgts-0.7-5_0.7.6+darcs121130-1.2 libgts-bin_0.7.6+darcs121130-1.2 libgts-dev_0.7.6+darcs121130-1.2 libhdf5-10_1.8.16+docs-8 libhdf5-cpp-11_1.8.16+docs-8 libhdf5-dev_1.8.16+docs-8 libhogweed4_3.2-1 libhwloc-dev_1.11.3-2+rpi1 libhwloc-plugins_1.11.3-2+rpi1 libhwloc5_1.11.3-2+rpi1 libibverbs-dev_1.2.0-1 libibverbs1_1.2.0-1 libicu55_55.1-7 libidn11_1.32-3 libisl15_0.16.1-1 libjpeg-dev_1:1.4.2-2 libjpeg62-turbo_1:1.4.2-2 libjpeg62-turbo-dev_1:1.4.2-2 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-9 libklibc_2.0.4-8+rpi1 libkmod2_22-1.1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 libltdl-dev_2.4.6-0.1 libltdl7_2.4.6-0.1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.28-5 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160319-1 libncursesw5_6.0+20160319-1 libnetcdf-dev_1:4.4.0-2 libnetcdf11_1:4.4.0-2 libnettle6_3.2-1 libnghttp2-14_1.10.0-1 libnl-3-200_3.2.27-1 libnl-route-3-200_3.2.27-1 libopenmpi-dev_1.10.2-12+rpi1 libopenmpi1.10_1.10.2-12+rpi1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpciaccess0_0.13.4-1 libpcre16-3_2:8.38-3.1 libpcre3_2:8.38-3.1 libpcre3-dev_2:8.38-3.1 libpcre32-3_2:8.38-3.1 libpcrecpp0v5_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps3_2:3.3.9-9 libprocps5_2:3.3.11-3 libpython-stdlib_2.7.11-1 libpython2.7-minimal_2.7.11-9 libpython2.7-stdlib_2.7.11-9 libreadline6_6.3-8+b3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.0-1 libselinux1_2.5-2 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3 libsmartcols1_2.28-5 libsqlite3-0_3.12.2-1 libss2_1.43~WIP.2016.03.15-2 libssh2-1_1.5.0-2.1 libssl1.0.2_1.0.2h-1 libstdc++-4.9-dev_4.9.3-14 libstdc++-5-dev_5.3.1-20 libstdc++6_6.1.1-1+rpi1 libsystemd0_229-5 libsz2_0.3.2-1 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-1 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_229-5 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28-5 mpi-default-dev_1.6 multiarch-support_2.22-7 nano_2.5.3-3 ncurses-base_6.0+20160319-1 ncurses-bin_6.0+20160319-1 ocl-icd-libopencl1_2.2.9-1 openmpi-common_1.10.2-12+rpi1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-config_0.29-4 po-debconf_1.0.19 procps_2:3.3.11-3 python_2.7.11-1 python-minimal_2.7.11-1 python2.7_2.7.11-9 python2.7-minimal_2.7.11-9 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gerris-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_229-5 systemd-sysv_229-5 sysv-rc_2.88dsf-59.4 sysvinit-utils_2.88dsf-59.4 tar_1.28-2.2+rpi1 tzdata_2016d-2 udev_229-5 util-linux_2.28-5 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun May 22 19:06:48 2016 UTC using RSA key ID CFA7FF06
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./gerris_20131206+dfsg-8.dsc
dpkg-source: info: extracting gerris in gerris-20131206+dfsg
dpkg-source: info: unpacking gerris_20131206+dfsg.orig.tar.gz
dpkg-source: info: unpacking gerris_20131206+dfsg-8.debian.tar.xz
dpkg-source: info: applying 01_automake_doc_examples
dpkg-source: info: applying 02_fix_makefiles.patch
dpkg-source: info: applying 03_build_funct.patch
dpkg-source: info: applying 04_replace_ffmpeg_by_avconv.patch
dpkg-source: info: applying 05_reproducible_build.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-49bf9cb9-8e2c-4367-bb1d-efcf3038a054
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package gerris
dpkg-buildpackage: info: source version 20131206+dfsg-8
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build gerris-20131206+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel --with autoreconf
dh_testdir -O--parallel
dh_auto_clean -O--parallel
dh_autoreconf_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --parallel --with autoreconf
dh_testdir -a -O--parallel
dh_update_autotools_config -a -O--parallel
dh_autoreconf -a -O--parallel
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:50: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:50: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:108: installing './compile'
configure.ac:50: installing './missing'
doc/Makefile.am:9: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
doc/Makefile.am:12: warning: source file '$(top_srcdir)/src/init.c' is in a subdirectory,
doc/Makefile.am:12: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
doc/Makefile.am: installing './depcomp'
doc/examples/Makefile.am:118: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
doc/examples/Makefile.am:123: warning: source file '$(top_srcdir)/src/init.c' is in a subdirectory,
doc/examples/Makefile.am:123: but option 'subdir-objects' is disabled
parallel-tests: installing './test-driver'
modules/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
src/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
tools/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_auto_configure -- --enable-mpi
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --enable-mpi
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for mpicc... yes
checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking whether mpicc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of mpicc... none
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... mpicc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC -DPIC
checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gawk... (cached) mawk
checking for library containing strerror... none required
checking for ANSI C header files... (cached) yes
checking whether pointers can be stored in doubles... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GTS... yes
checking whether modules are supported... yes
checking for pkg-config... yes
checking for m4... yes
checking check whether m4 accepts the -P option... yes
checking for pj_fwd in -lproj... no
configure: WARNING: libproj not found. Map module will not be available.
checking proj_api.h usability... no
checking proj_api.h presence... no
checking for proj_api.h... no
checking for gsl-config... /usr/bin/gsl-config
checking for GSL - version >= 0.2.5... yes
checking for nc_open in -lnetcdf... yes
checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
checking for g77... no
checking for xlf... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... yes
checking if f77 supports -c -o file.o... yes
checking if f77 supports -c -o file.o... (cached) yes
checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/arm-linux-gnueabihf/5 -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking for ode-config... no
configure: WARNING: ODE not found. ode module will not be available.
checking for HYPRE_IJMatrixCreate in -lHYPRE... no
configure: WARNING: HYPRE not found. hypre Module won't be available.
checking for lis_initialize in -llis... no
configure: WARNING: lis not found. lis Module won't be available.
checking for FFTW3... no
checking fenv.h usability... yes
checking fenv.h presence... yes
checking for fenv.h... yes
checking for unistd.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking for getopt_long... yes
checking for g_mkdtemp... yes
checking for open_memstream... yes
checking for funopen... no
checking for open_memstream... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gerris2D.pc
config.status: creating src/gerris3D.pc
config.status: creating tools/Makefile
config.status: creating modules/Makefile
config.status: creating modules/RStarTree/Makefile
config.status: creating modules/kdt/Makefile
config.status: creating modules/fes2004/Makefile
config.status: creating modules/wavewatch/Makefile
config.status: creating modules/culvert/Makefile
config.status: creating test/Makefile
config.status: creating doc/Makefile
config.status: creating doc/tutorial/Makefile
config.status: creating doc/examples/Makefile
config.status: creating doc/manpages/Makefile
config.status: creating doc/examples/gfs2doc
config.status: creating doc/examples/gfs-highlight
config.status: creating doc/examples/crossref.sh
config.status: creating desktop/Makefile
config.status: creating debian/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
Configuration summary
System = arm-unknown-linux-gnueabihf
C Compiler = mpicc
C Flags = -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99
MPI enabled = yes
GModule support = yes
pkg-config = yes
m4 = yes
m4 options = -P
open_memstream = yes
Modules
map = no
tide = yes
stokes = yes
wavewatch = no
hypre = no
lis = no
agmg = no
ode = no
bubbles = yes
fft = no
make[1]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_auto_build -a -O--parallel
make -j1
make[1]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make all-recursive
make[2]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
Making all in src
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make all-am
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-ftt.lo `test -f 'ftt.c' || echo './'`ftt.c
In file included from /usr/include/stdlib.h:24:0,
from ftt.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-fluid.lo `test -f 'fluid.c' || echo './'`fluid.c
In file included from /usr/include/math.h:26:0,
from fluid.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
fluid.c:126:20: warning: 'interpolate_1D2' defined but not used [-Wunused-function]
static GfsGradient interpolate_1D2 (FttCell * cell,
^
fluid.c: In function 'face_bilinear':
fluid.c:1151:37: warning: 'd[2]' is used uninitialized in this function [-Wuninitialized]
d1[0] = d[1]; d1[1] = d[0]; d1[2] = d[2];
^
fluid.c: In function 'gfs_cell_corner_interpolator':
fluid.c:3006:13: warning: 'n[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
FttCell * n[N_CELLS];
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-variable.lo `test -f 'variable.c' || echo './'`variable.c
In file included from /usr/include/stdlib.h:24:0,
from variable.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-output.lo `test -f 'output.c' || echo './'`output.c
In file included from /usr/include/stdlib.h:24:0,
from output.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-solid.lo `test -f 'solid.c' || echo './'`solid.c
In file included from /usr/include/math.h:26:0,
from solid.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-poisson.lo `test -f 'poisson.c' || echo './'`poisson.c
In file included from /usr/include/math.h:26:0,
from poisson.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-advection.lo `test -f 'advection.c' || echo './'`advection.c
In file included from /usr/include/stdlib.h:24:0,
from advection.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-boundary.lo `test -f 'boundary.c' || echo './'`boundary.c
In file included from /usr/include/stdlib.h:24:0,
from boundary.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-mpi_boundary.lo `test -f 'mpi_boundary.c' || echo './'`mpi_boundary.c
In file included from /usr/include/stdlib.h:24:0,
from mpi_boundary.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
mpi_boundary.c: In function 'gfs_boundary_mpi_init':
mpi_boundary.c:280:5: warning: 'MPI_Attr_get' is deprecated: MPI_Attr_get is superseded by MPI_Comm_get_attr in MPI-2.0 [-Wdeprecated-declarations]
MPI_Attr_get (MPI_COMM_WORLD, MPI_TAG_UB, &tagub, &flag);
^
In file included from utils.h:34:0,
from boundary.h:24,
from domain.h:23,
from mpi_boundary.c:24:
/usr/lib/openmpi/include/mpi.h:1227:20: note: declared here
OMPI_DECLSPEC int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag)
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-timestep.lo `test -f 'timestep.c' || echo './'`timestep.c
In file included from /usr/include/math.h:26:0,
from timestep.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-domain.lo `test -f 'domain.c' || echo './'`domain.c
In file included from /usr/include/math.h:26:0,
from domain.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-init.lo `test -f 'init.c' || echo './'`init.c
init.c:33:0: warning: "_GNU_SOURCE" redefined
# define _GNU_SOURCE
^
<command-line>:0:0: note: this is the location of the previous definition
In file included from /usr/include/fenv.h:25:0,
from init.c:34:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
init.c: In function 'gfs_init':
init.c:416:5: warning: 'MPI_Errhandler_set' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations]
MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL);
^
In file included from utils.h:34:0,
from boundary.h:24,
from init.c:49:
/usr/lib/openmpi/include/mpi.h:1339:20: note: declared here
OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler)
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-refine.lo `test -f 'refine.c' || echo './'`refine.c
In file included from /usr/include/stdlib.h:24:0,
from refine.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-event.lo `test -f 'event.c' || echo './'`event.c
In file included from /usr/include/stdlib.h:24:0,
from event.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-simulation.lo `test -f 'simulation.c' || echo './'`simulation.c
In file included from /usr/include/stdlib.h:24:0,
from simulation.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-graphic.lo `test -f 'graphic.c' || echo './'`graphic.c
In file included from /usr/include/stdlib.h:24:0,
from graphic.c:30:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
graphic.c: In function 'grow_curve':
graphic.c:1986:17: warning: variable 'p1' set but not used [-Wunused-but-set-variable]
FttVector p1;
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-adaptive.lo `test -f 'adaptive.c' || echo './'`adaptive.c
In file included from /usr/include/stdlib.h:24:0,
from adaptive.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-source.lo `test -f 'source.c' || echo './'`source.c
In file included from /usr/include/stdlib.h:24:0,
from source.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-tension.lo `test -f 'tension.c' || echo './'`tension.c
In file included from /usr/include/math.h:26:0,
from tension.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-vof.lo `test -f 'vof.c' || echo './'`vof.c
In file included from /usr/include/math.h:26:0,
from vof.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
vof.c: In function 'gfs_height_curvature':
vof.c:2619:11: warning: unused variable 'area' [-Wunused-variable]
gdouble area = gfs_vof_center (cell, t, &fc);
^
vof.c: In function 'gfs_height_curvature_new':
vof.c:2871:11: warning: unused variable 'area' [-Wunused-variable]
gdouble area = gfs_vof_center (cell, GFS_VARIABLE_TRACER_VOF (t), &fc);
^
vof.c: At top level:
vof.c:850:13: warning: 'youngs_normal' defined but not used [-Wunused-function]
static void youngs_normal (FttCell * cell, GfsVariable * v, FttVector * n)
^
vof.c:1771:16: warning: 'face_value' defined but not used [-Wunused-function]
static gdouble face_value (FttCell * cell, FttDirection d, GfsVariable * v)
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-utils.lo `test -f 'utils.c' || echo './'`utils.c
In file included from /usr/include/stdlib.h:24:0,
from utils.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-ocean.lo `test -f 'ocean.c' || echo './'`ocean.c
In file included from /usr/include/stdlib.h:24:0,
from ocean.c:24:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
ocean.c: In function 'correct_normal_velocity':
ocean.c:45:15: warning: variable 'type' set but not used [-Wunused-but-set-variable]
FttFaceType type;
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-wave.lo `test -f 'wave.c' || echo './'`wave.c
In file included from /usr/include/stdlib.h:24:0,
from wave.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-levelset.lo `test -f 'levelset.c' || echo './'`levelset.c
In file included from /usr/include/stdlib.h:24:0,
from levelset.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-cartesian.lo `test -f 'cartesian.c' || echo './'`cartesian.c
In file included from /usr/include/stdlib.h:24:0,
from cartesian.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-surface.lo `test -f 'surface.c' || echo './'`surface.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from simulation.h:27,
from surface.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-unstructured.lo `test -f 'unstructured.c' || echo './'`unstructured.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from unstructured.h:24,
from unstructured.c:24:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-map.lo `test -f 'map.c' || echo './'`map.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from advection.h:27,
from timestep.h:27,
from variable.h:29,
from map.h:27,
from map.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
map.c: In function 'gfs_map_read':
map.c:34:12: warning: variable 'class_changed' set but not used [-Wunused-but-set-variable]
gboolean class_changed = FALSE;
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-river.lo `test -f 'river.c' || echo './'`river.c
In file included from /usr/include/stdlib.h:24:0,
from river.c:55:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-moving.lo `test -f 'moving.c' || echo './'`moving.c
In file included from /usr/include/stdlib.h:24:0,
from moving.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
In file included from moving.c:49:0:
moving2.c: In function 'second_order_face_fractions':
moving2.c:257:33: warning: variable 's1' set but not used [-Wunused-but-set-variable]
gdouble dt1, dt2, dto1, dto2, s1, s2;
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-balance.lo `test -f 'balance.c' || echo './'`balance.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from event.h:27,
from balance.h:27,
from balance.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-metric.lo `test -f 'metric.c' || echo './'`metric.c
In file included from /usr/include/stdlib.h:24:0,
from metric.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
metric.c:221:15: warning: 'kpu_2d_l2' defined but not used [-Wunused-variable]
static double kpu_2d_l2[5][3] = {
^
metric.c:241:15: warning: 'kpu_2d_l4' defined but not used [-Wunused-variable]
static double kpu_2d_l4[17][3] = {
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-particle.lo `test -f 'particle.c' || echo './'`particle.c
In file included from /usr/include/stdlib.h:24:0,
from particle.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -Wl,-z,relro -o libgfs2D.la -rpath /usr/lib/arm-linux-gnueabihf libgfs2D_la-ftt.lo libgfs2D_la-fluid.lo libgfs2D_la-variable.lo libgfs2D_la-output.lo libgfs2D_la-solid.lo libgfs2D_la-poisson.lo libgfs2D_la-advection.lo libgfs2D_la-boundary.lo libgfs2D_la-mpi_boundary.lo libgfs2D_la-timestep.lo libgfs2D_la-domain.lo libgfs2D_la-init.lo libgfs2D_la-refine.lo libgfs2D_la-event.lo libgfs2D_la-simulation.lo libgfs2D_la-graphic.lo libgfs2D_la-adaptive.lo libgfs2D_la-source.lo libgfs2D_la-tension.lo libgfs2D_la-vof.lo libgfs2D_la-utils.lo libgfs2D_la-ocean.lo libgfs2D_la-wave.lo libgfs2D_la-levelset.lo libgfs2D_la-cartesian.lo libgfs2D_la-surface.lo libgfs2D_la-unstructured.lo libgfs2D_la-map.lo libgfs2D_la-river.lo libgfs2D_la-moving.lo libgfs2D_la-balance.lo libgfs2D_la-metric.lo libgfs2D_la-particle.lo -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ftt.lo ftt.c
In file included from /usr/include/stdlib.h:24:0,
from ftt.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o fluid.lo fluid.c
In file included from /usr/include/math.h:26:0,
from fluid.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
fluid.c: In function 'gfs_cell_coarse_fine':
fluid.c:1918:42: warning: unused variable 'gz4' [-Wunused-variable]
double gz3 = g.z*(a[3] + a[7])/sa, gz4 = - g.z*(a[1] + a[5])/sa;
^
fluid.c:1918:14: warning: unused variable 'gz3' [-Wunused-variable]
double gz3 = g.z*(a[3] + a[7])/sa, gz4 = - g.z*(a[1] + a[5])/sa;
^
fluid.c:1916:42: warning: unused variable 'gy4' [-Wunused-variable]
double gy3 = g.y*(a[6] + a[7])/sa, gy4 = - g.y*(a[4] + a[5])/sa;
^
fluid.c:1916:14: warning: unused variable 'gy3' [-Wunused-variable]
double gy3 = g.y*(a[6] + a[7])/sa, gy4 = - g.y*(a[4] + a[5])/sa;
^
fluid.c:1914:42: warning: unused variable 'gx4' [-Wunused-variable]
double gx3 = g.x*(a[4] + a[6])/sa, gx4 = - g.x*(a[5] + a[7])/sa;
^
fluid.c:1914:14: warning: unused variable 'gx3' [-Wunused-variable]
double gx3 = g.x*(a[4] + a[6])/sa, gx4 = - g.x*(a[5] + a[7])/sa;
^
fluid.c: In function 'gfs_cell_corner_interpolator':
fluid.c:3006:13: warning: 'n[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
FttCell * n[N_CELLS];
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o variable.lo variable.c
In file included from /usr/include/stdlib.h:24:0,
from variable.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o output.lo output.c
In file included from /usr/include/stdlib.h:24:0,
from output.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o solid.lo solid.c
In file included from /usr/include/math.h:26:0,
from solid.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
solid.c: In function 'set_solid_fractions_from_surface':
solid.c:561:21: warning: comparison between 'FttComponent {aka enum <anonymous>}' and 'enum <anonymous>' [-Wenum-compare]
for (c = 1; c < FTT_NEIGHBORS; c++)
^
In file included from solid.c:338:0:
solid.c: At top level:
isocube.h:47:18: warning: 'edge' defined but not used [-Wunused-variable]
static FttVector edge[12][2] = {
^
isocube.h:52:14: warning: 'connectv' defined but not used [-Wunused-variable]
static guint connectv[12][2][4] = {
^
isocube.h:66:18: warning: 'cvertex' defined but not used [-Wunused-variable]
static FttVector cvertex[8] = {
^
isocube.h:95:21: warning: 'corner' defined but not used [-Wunused-variable]
static FttDirection corner[8][3] = {
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o poisson.lo poisson.c
In file included from /usr/include/math.h:26:0,
from poisson.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o advection.lo advection.c
In file included from /usr/include/stdlib.h:24:0,
from advection.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o boundary.lo boundary.c
In file included from /usr/include/stdlib.h:24:0,
from boundary.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o mpi_boundary.lo mpi_boundary.c
In file included from /usr/include/stdlib.h:24:0,
from mpi_boundary.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
mpi_boundary.c: In function 'gfs_boundary_mpi_init':
mpi_boundary.c:280:5: warning: 'MPI_Attr_get' is deprecated: MPI_Attr_get is superseded by MPI_Comm_get_attr in MPI-2.0 [-Wdeprecated-declarations]
MPI_Attr_get (MPI_COMM_WORLD, MPI_TAG_UB, &tagub, &flag);
^
In file included from utils.h:34:0,
from boundary.h:24,
from domain.h:23,
from mpi_boundary.c:24:
/usr/lib/openmpi/include/mpi.h:1227:20: note: declared here
OMPI_DECLSPEC int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag)
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o timestep.lo timestep.c
In file included from /usr/include/math.h:26:0,
from timestep.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o domain.lo domain.c
In file included from /usr/include/math.h:26:0,
from domain.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o init.lo init.c
init.c:33:0: warning: "_GNU_SOURCE" redefined
# define _GNU_SOURCE
^
<command-line>:0:0: note: this is the location of the previous definition
In file included from /usr/include/fenv.h:25:0,
from init.c:34:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
init.c: In function 'gfs_init':
init.c:416:5: warning: 'MPI_Errhandler_set' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations]
MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL);
^
In file included from utils.h:34:0,
from boundary.h:24,
from init.c:49:
/usr/lib/openmpi/include/mpi.h:1339:20: note: declared here
OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler)
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o refine.lo refine.c
In file included from /usr/include/stdlib.h:24:0,
from refine.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o event.lo event.c
In file included from /usr/include/stdlib.h:24:0,
from event.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o simulation.lo simulation.c
In file included from /usr/include/stdlib.h:24:0,
from simulation.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o graphic.lo graphic.c
In file included from /usr/include/stdlib.h:24:0,
from graphic.c:30:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
In file included from graphic.c:42:0:
isocube.h:27:18: warning: 'vertex' defined but not used [-Wunused-variable]
static FttVector vertex[8] = {
^
isocube.h:31:14: warning: 'face' defined but not used [-Wunused-variable]
static guint face[6][4][2] = {
^
isocube.h:39:14: warning: 'face_v' defined but not used [-Wunused-variable]
static guint face_v[6][4] = {
^
isocube.h:52:14: warning: 'connectv' defined but not used [-Wunused-variable]
static guint connectv[12][2][4] = {
^
isocube.h:66:18: warning: 'cvertex' defined but not used [-Wunused-variable]
static FttVector cvertex[8] = {
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o adaptive.lo adaptive.c
In file included from /usr/include/stdlib.h:24:0,
from adaptive.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o source.lo source.c
In file included from /usr/include/stdlib.h:24:0,
from source.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o tension.lo tension.c
In file included from /usr/include/math.h:26:0,
from tension.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o vof.lo vof.c
In file included from /usr/include/math.h:26:0,
from vof.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
vof.c:850:13: warning: 'youngs_normal' defined but not used [-Wunused-function]
static void youngs_normal (FttCell * cell, GfsVariable * v, FttVector * n)
^
vof.c:1771:16: warning: 'face_value' defined but not used [-Wunused-function]
static gdouble face_value (FttCell * cell, FttDirection d, GfsVariable * v)
^
vof.c:2646:16: warning: 'neighboring_column' defined but not used [-Wunused-function]
static gdouble neighboring_column (FttCell * cell,
^
vof.c:2682:13: warning: 'curvature_from_h' defined but not used [-Wunused-function]
static void curvature_from_h (FttCell * cell, GfsDomain * domain,
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o utils.lo utils.c
In file included from /usr/include/stdlib.h:24:0,
from utils.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ocean.lo ocean.c
In file included from /usr/include/stdlib.h:24:0,
from ocean.c:24:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
ocean.c: In function 'correct_normal_velocity':
ocean.c:45:15: warning: variable 'type' set but not used [-Wunused-but-set-variable]
FttFaceType type;
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o wave.lo wave.c
In file included from /usr/include/stdlib.h:24:0,
from wave.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o levelset.lo levelset.c
In file included from /usr/include/stdlib.h:24:0,
from levelset.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o cartesian.lo cartesian.c
In file included from /usr/include/stdlib.h:24:0,
from cartesian.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o surface.lo surface.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from simulation.h:27,
from surface.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o unstructured.lo unstructured.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from unstructured.h:24,
from unstructured.c:24:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o map.lo map.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from advection.h:27,
from timestep.h:27,
from variable.h:29,
from map.h:27,
from map.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
map.c: In function 'gfs_map_read':
map.c:34:12: warning: variable 'class_changed' set but not used [-Wunused-but-set-variable]
gboolean class_changed = FALSE;
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o river.lo river.c
In file included from /usr/include/stdlib.h:24:0,
from river.c:55:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o moving.lo moving.c
In file included from /usr/include/stdlib.h:24:0,
from moving.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
In file included from moving.c:49:0:
moving2.c: In function 'second_order_face_fractions':
moving2.c:257:33: warning: variable 's1' set but not used [-Wunused-but-set-variable]
gdouble dt1, dt2, dto1, dto2, s1, s2;
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o balance.lo balance.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from event.h:27,
from balance.h:27,
from balance.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o metric.lo metric.c
In file included from /usr/include/stdlib.h:24:0,
from metric.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
metric.c:221:15: warning: 'kpu_2d_l2' defined but not used [-Wunused-variable]
static double kpu_2d_l2[5][3] = {
^
metric.c:241:15: warning: 'kpu_2d_l4' defined but not used [-Wunused-variable]
static double kpu_2d_l4[17][3] = {
^
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o particle.lo particle.c
In file included from /usr/include/stdlib.h:24:0,
from particle.c:23:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -Wl,-z,relro -o libgfs3D.la -rpath /usr/lib/arm-linux-gnueabihf ftt.lo fluid.lo variable.lo output.lo solid.lo poisson.lo advection.lo boundary.lo mpi_boundary.lo timestep.lo domain.lo init.lo refine.lo event.lo simulation.lo graphic.lo adaptive.lo source.lo tension.lo vof.lo utils.lo ocean.lo wave.lo levelset.lo cartesian.lo surface.lo unstructured.lo map.lo river.lo moving.lo balance.lo metric.lo particle.lo -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gerris2D-gerris.o `test -f 'gerris.c' || echo './'`gerris.c
In file included from /usr/include/stdlib.h:24:0,
from gerris.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o gerris2D gerris2D-gerris.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gerris.o gerris.c
In file included from /usr/include/stdlib.h:24:0,
from gerris.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o gerris3D gerris.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
Making all in modules
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
Making all in RStarTree
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RStarTree.lo `test -f 'RStarTree.c' || echo './'`RStarTree.c
In file included from /usr/include/stdlib.h:24:0,
from RStarTree.c:3:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
RStarTree.c: In function 'BasicCheck':
RStarTree.c:824:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n","sizeof(byte):",sizeof(byte));
^
RStarTree.c:831:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n","sizeof(int):",sizeof(int));
^
RStarTree.c:838:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n","sizeof(typinfo):",sizeof(typinfo));
^
RStarTree.c:839:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n"," sizeof(int):",sizeof(int));
^
RStarTree.c:846:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n"," sizeof(typpagedir):",sizeof(typpagedir));
^
RStarTree.c:847:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n","sizeof(typfixblock):",sizeof(typfixblock));
^
RStarTree.c:854:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n","sizeof(typparameters):",sizeof(typparameters));
^
RStarTree.c:855:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n"," sizeof(typfixblock):",sizeof(typfixblock));
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInstDel.lo `test -f 'RSTInstDel.c' || echo './'`RSTInstDel.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTInstDel.c:4:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
RSTInstDel.c: In function 'SplitAndDistributData':
RSTInstDel.c:748:7: warning: 'axisindex' may be used uninitialized in this function [-Wmaybe-uninitialized]
axisindex;
^
RSTInstDel.c:971:6: warning: 'axis' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (axis != (*par).maxdim || axsortside != currsortside) {
^
RSTInstDel.c:744:32: warning: 'axsortside' may be used uninitialized in this function [-Wmaybe-uninitialized]
Side sortside, currsortside, axsortside;
^
RSTInstDel.c:940:16: warning: 'backvalvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (value < backvalvalue) {
^
RSTInstDel.c:952:8: warning: 'validvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (backvalvalue <= validvalue) {
^
RSTInstDel.c:938:24: warning: 'backvaledge' may be used uninitialized in this function [-Wmaybe-uninitialized]
backvaledge= backvaledge+edge;
^
RSTInstDel.c:956:14: warning: 'validedge' may be used uninitialized in this function [-Wmaybe-uninitialized]
validedge= validedge+backvaledge;
^
RSTInstDel.c: In function 'SplitAndDistributDir':
RSTInstDel.c:482:7: warning: 'axisindex' may be used uninitialized in this function [-Wmaybe-uninitialized]
axisindex;
^
RSTInstDel.c:705:6: warning: 'axis' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (axis != (*par).maxdim || axsortside != currsortside) {
^
RSTInstDel.c:478:32: warning: 'axsortside' may be used uninitialized in this function [-Wmaybe-uninitialized]
Side sortside, currsortside, axsortside;
^
RSTInstDel.c:674:16: warning: 'backvalvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (value < backvalvalue) {
^
RSTInstDel.c:686:8: warning: 'validvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (backvalvalue <= validvalue) {
^
RSTInstDel.c:672:24: warning: 'backvaledge' may be used uninitialized in this function [-Wmaybe-uninitialized]
backvaledge= backvaledge+edge;
^
RSTInstDel.c:690:14: warning: 'validedge' may be used uninitialized in this function [-Wmaybe-uninitialized]
validedge= validedge+backvaledge;
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTJoin.lo `test -f 'RSTJoin.c' || echo './'`RSTJoin.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTJoin.c:4:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTUtil.lo `test -f 'RSTUtil.c' || echo './'`RSTUtil.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTUtil.c:4:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
RSTUtil.c: In function 'Covers':
RSTUtil.c:204:7: warning: variable 'maxdim' set but not used [-Wunused-but-set-variable]
int maxdim;
^
RSTUtil.c: In function 'ChooseSubtree':
RSTUtil.c:546:16: warning: variable 'inv' set but not used [-Wunused-but-set-variable]
int maxexam, inv;
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInOut.lo `test -f 'RSTInOut.c' || echo './'`RSTInOut.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTInOut.c:4:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInterUtil.lo `test -f 'RSTInterUtil.c' || echo './'`RSTInterUtil.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTInterUtil.c:4:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
RSTInterUtil.c: In function 'SetCheckDir':
RSTInterUtil.c:208:7: warning: variable 'PACKEDSIZE_DIRnofentries' set but not used [-Wunused-but-set-variable]
PACKEDSIZE_DIRnofentries, REALSIZE_DIRnofentries;
^
RSTInterUtil.c:207:7: warning: variable 'PACKEDdirentrylen' set but not used [-Wunused-but-set-variable]
PACKEDdirentrylen, REALdirentrylen,
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTQuery.lo `test -f 'RSTQuery.c' || echo './'`RSTQuery.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTQuery.c:4:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o libcSmRST.la libcSmRST_la-RStarTree.lo libcSmRST_la-RSTInstDel.lo libcSmRST_la-RSTJoin.lo libcSmRST_la-RSTUtil.lo libcSmRST_la-RSTInOut.lo libcSmRST_la-RSTInterUtil.lo libcSmRST_la-RSTQuery.lo
ar: `u' modifier ignored since `D' is the default (see `U')
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
Making all in kdt
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libkdt_la-kdt.lo `test -f 'kdt.c' || echo './'`kdt.c
In file included from /usr/include/stdlib.h:24:0,
from kdt.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
kdt.c:252:13: warning: 'kdt_write' defined but not used [-Wunused-function]
static void kdt_write (KdtHeap * h, FILE * fp)
^
kdt.c:450:13: warning: 'kdt_rect_write' defined but not used [-Wunused-function]
static void kdt_rect_write (const KdtRect rect, FILE * fp)
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o libkdt.la libkdt_la-kdt.lo
ar: `u' modifier ignored since `D' is the default (see `U')
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o xyz2kdt-xyz2kdt.o `test -f 'xyz2kdt.c' || echo './'`xyz2kdt.c
In file included from /usr/include/stdlib.h:24:0,
from xyz2kdt.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o xyz2kdt xyz2kdt-xyz2kdt.o -lkdt -lm
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o kdt2kdt-kdt2kdt.o `test -f 'kdt2kdt.c' || echo './'`kdt2kdt.c
In file included from /usr/include/stdlib.h:24:0,
from kdt2kdt.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o kdt2kdt kdt2kdt-kdt2kdt.o -lkdt -lm
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o kdtquery-kdtquery.o `test -f 'kdtquery.c' || echo './'`kdtquery.c
In file included from /usr/include/stdlib.h:24:0,
from kdtquery.c:21:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o kdtquery kdtquery-kdtquery.o -lkdt -lm
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
Making all in fes2004
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_alloc.lo `test -f 'fes2004_alloc.c' || echo './'`fes2004_alloc.c
In file included from /usr/include/stdio.h:27:0,
from fes2004_lib.h:12,
from fes2004_alloc.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_error.lo `test -f 'fes2004_error.c' || echo './'`fes2004_error.c
In file included from /usr/include/stdio.h:27:0,
from fes2004_error.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
fes2004_error.c:4:6: warning: no previous prototype for 'print_error_1' [-Wmissing-prototypes]
void print_error_1()
^
fes2004_error.c:11:6: warning: no previous prototype for 'print_error_2' [-Wmissing-prototypes]
void print_error_2()
^
fes2004_error.c:18:6: warning: no previous prototype for 'print_error_3' [-Wmissing-prototypes]
void print_error_3(char *message)
^
fes2004_error.c:25:6: warning: no previous prototype for 'print_error_4' [-Wmissing-prototypes]
void print_error_4(char *message)
^
fes2004_error.c:32:6: warning: no previous prototype for 'print_error_5' [-Wmissing-prototypes]
void print_error_5(char *message)
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_extraction.lo `test -f 'fes2004_extraction.c' || echo './'`fes2004_extraction.c
In file included from /usr/include/stdio.h:27:0,
from fes2004_lib.h:12,
from fes2004_extraction.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_init.lo `test -f 'fes2004_init.c' || echo './'`fes2004_init.c
In file included from /usr/include/stdio.h:27:0,
from fes2004_lib.h:12,
from fes2004_init.c:2:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
fes2004_init.c: In function 'init_spectrum':
fes2004_init.c:42:7: warning: variable 'rstatus' set but not used [-Wunused-but-set-variable]
int rstatus;
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_io.lo `test -f 'fes2004_io.c' || echo './'`fes2004_io.c
In file included from /usr/include/errno.h:28:0,
from /usr/include/netcdf.h:16,
from fes2004_io.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
fes2004_io.c: In function 'load_netcdf_fes2004_data':
fes2004_io.c:16:9: warning: variable 'rstatus' set but not used [-Wunused-but-set-variable]
int i,rstatus;
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_prediction.lo `test -f 'fes2004_prediction.c' || echo './'`fes2004_prediction.c
In file included from /usr/include/stdio.h:27:0,
from fes2004_lib.h:12,
from fes2004_prediction.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_kernel.lo `test -f 'fes2004_kernel.c' || echo './'`fes2004_kernel.c
In file included from /usr/include/errno.h:28:0,
from /usr/include/netcdf.h:16,
from fes2004_kernel.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
fes2004_kernel.c: In function 'pred_coeur':
fes2004_kernel.c:115:10: warning: variable 'pi' set but not used [-Wunused-but-set-variable]
double pi;
^
fes2004_kernel.c: In function 'extract_coeur':
fes2004_kernel.c:191:10: warning: variable 'pi' set but not used [-Wunused-but-set-variable]
double pi;
^
fes2004_kernel.c: In function 'compute_admittance':
fes2004_kernel.c:457:11: warning: variable 'gsl_out' set but not used [-Wunused-but-set-variable]
int i,n,gsl_out;
^
fes2004_kernel.c: In function 'astronomic_angle':
fes2004_kernel.c:663:16: warning: variable 'sin2I' set but not used [-Wunused-but-set-variable]
double t2,t4,sin2I,s2;
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o libfes.la libfes_la-fes2004_alloc.lo libfes_la-fes2004_error.lo libfes_la-fes2004_extraction.lo libfes_la-fes2004_init.lo libfes_la-fes2004_io.lo libfes_la-fes2004_prediction.lo libfes_la-fes2004_kernel.lo
ar: `u' modifier ignored since `D' is the default (see `U')
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
Making all in wavewatch
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
Making all in culvert
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libboyd87_la-boyd87.lo `test -f 'boyd87.c' || echo './'`boyd87.c
In file included from /usr/include/math.h:26:0,
from boyd87.c:9:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o libboyd87.la libboyd87_la-boyd87.lo
ar: `u' modifier ignored since `D' is the default (see `U')
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o check_inlet-check_inlet.o `test -f 'check_inlet.c' || echo './'`check_inlet.c
In file included from /usr/include/stdio.h:27:0,
from check_inlet.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o check_inlet check_inlet-check_inlet.o -lboyd87 -lm
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o check_outlet-check_outlet.o `test -f 'check_outlet.c' || echo './'`check_outlet.c
In file included from /usr/include/stdio.h:27:0,
from check_outlet.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o check_outlet check_outlet-check_outlet.o -lboyd87 -lm
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o discharge_table-discharge_table.o `test -f 'discharge_table.c' || echo './'`discharge_table.c
In file included from /usr/include/stdio.h:27:0,
from discharge_table.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o discharge_table discharge_table-discharge_table.o -lboyd87 -lm
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulatecommon2D_la-particulatecommon.lo `test -f 'particulatecommon.c' || echo './'`particulatecommon.c
In file included from /usr/include/stdlib.h:24:0,
from particulatecommon.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libparticulatecommon2D.la libparticulatecommon2D_la-particulatecommon.lo
libtool: warning: '-version-info/-version-number' is ignored for convenience libraries
libtool: warning: '-release' is ignored for convenience libraries
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulatecommon3D_la-particulatecommon.lo `test -f 'particulatecommon.c' || echo './'`particulatecommon.c
In file included from /usr/include/stdlib.h:24:0,
from particulatecommon.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libparticulatecommon3D.la libparticulatecommon3D_la-particulatecommon.lo
libtool: warning: '-version-info/-version-number' is ignored for convenience libraries
libtool: warning: '-release' is ignored for convenience libraries
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libterrain2D_la-terrain.lo `test -f 'terrain.c' || echo './'`terrain.c
In file included from /usr/include/stdlib.h:24:0,
from terrain.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libterrain2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libterrain2D_la-terrain.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lkdt -lkdt -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o terrain.lo terrain.c
In file included from /usr/include/stdlib.h:24:0,
from terrain.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libterrain3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris terrain.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lkdt -lkdt -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulates2D_la-particulates.lo `test -f 'particulates.c' || echo './'`particulates.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from ../src/particle.h:27,
from particulatecommon.h:20,
from particulates.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libparticulates2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libparticulates2D_la-particulates.lo libparticulatecommon2D.la ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulates3D_la-particulates.lo `test -f 'particulates.c' || echo './'`particulates.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from ../src/particle.h:27,
from particulatecommon.h:20,
from particulates.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libparticulates3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libparticulates3D_la-particulates.lo libparticulatecommon3D.la ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libokada2D_la-okada.lo `test -f 'okada.c' || echo './'`okada.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from okada.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libokada2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libokada2D_la-okada.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libokada3D_la-okada.lo `test -f 'okada.c' || echo './'`okada.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from okada.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libokada3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libokada3D_la-okada.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libdf33D_la-df3.lo `test -f 'df3.c' || echo './'`df3.c
In file included from /usr/include/stdlib.h:24:0,
from df3.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libdf33D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libdf33D_la-df3.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libelectrohydro2D_la-electrohydro.lo `test -f 'electrohydro.c' || echo './'`electrohydro.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/fluid.h:23,
from ../src/boundary.h:23,
from ../src/domain.h:23,
from ../src/simulation.h:27,
from electrohydro.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libelectrohydro2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libelectrohydro2D_la-electrohydro.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libelectrohydro3D_la-electrohydro.lo `test -f 'electrohydro.c' || echo './'`electrohydro.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/fluid.h:23,
from ../src/boundary.h:23,
from ../src/domain.h:23,
from ../src/simulation.h:27,
from electrohydro.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libelectrohydro3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libelectrohydro3D_la-electrohydro.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libskewsymmetric2D_la-skewsymmetric.lo `test -f 'skewsymmetric.c' || echo './'`skewsymmetric.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/fluid.h:23,
from ../src/boundary.h:23,
from ../src/domain.h:23,
from ../src/simulation.h:27,
from skewsymmetric.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
skewsymmetric.c: In function 'gfs_skew_symmetric_run':
skewsymmetric.c:591:23: warning: variable 'res' set but not used [-Wunused-but-set-variable]
GfsVariable * p, * res = NULL, * gmac[FTT_DIMENSION];
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libskewsymmetric2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libskewsymmetric2D_la-skewsymmetric.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libskewsymmetric3D_la-skewsymmetric.lo `test -f 'skewsymmetric.c' || echo './'`skewsymmetric.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/fluid.h:23,
from ../src/boundary.h:23,
from ../src/domain.h:23,
from ../src/simulation.h:27,
from skewsymmetric.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
skewsymmetric.c: In function 'gfs_skew_symmetric_run':
skewsymmetric.c:591:23: warning: variable 'res' set but not used [-Wunused-but-set-variable]
GfsVariable * p, * res = NULL, * gmac[FTT_DIMENSION];
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libskewsymmetric3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libskewsymmetric3D_la-skewsymmetric.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtopics2D_la-topics.lo `test -f 'topics.c' || echo './'`topics.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/solid.h:23,
from topics.c:21:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
In file included from ../src/timestep.h:29:0,
from ../src/simulation.h:28,
from ../src/event.h:53,
from ../src/solid.h:26,
from topics.c:21:
topics.c: In function 'print_interface':
topics.c:1139:38: warning: array subscript is above array bounds [-Warray-bounds]
double nz = GFS_VALUE(cell, tv->m[2]);
^
../src/variable.h:76:74: note: in definition of macro 'GFS_VALUE'
#define GFS_VALUE(cell,v) ((&GFS_STATE (cell)->place_holder)[(v)->i])
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libtopics2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libtopics2D_la-topics.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtopics3D_la-topics.lo `test -f 'topics.c' || echo './'`topics.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/solid.h:23,
from topics.c:21:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libtopics3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libtopics3D_la-topics.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libculvert2D_la-culvert.lo `test -f 'culvert.c' || echo './'`culvert.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from ../src/source.h:27,
from ../src/river.h:27,
from culvert.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libculvert2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libculvert2D_la-culvert.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lculvert -lboyd87 -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o liblayered2D_la-layered.lo `test -f 'layered.c' || echo './'`layered.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/fluid.h:23,
from ../src/boundary.h:23,
from ../src/domain.h:23,
from ../src/simulation.h:27,
from layered.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o liblayered2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris liblayered2D_la-layered.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtide2D_la-tide.lo `test -f 'tide.c' || echo './'`tide.c
In file included from /usr/include/string.h:25:0,
from tide.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libtide2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libtide2D_la-tide.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lfes2004 -lfes -lnetcdf -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtide3D_la-tide.lo `test -f 'tide.c' || echo './'`tide.c
In file included from /usr/include/string.h:25:0,
from tide.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libtide3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libtide3D_la-tide.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lfes2004 -lfes -lnetcdf -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libstokes2D_la-stokes.lo `test -f 'stokes.c' || echo './'`stokes.c
In file included from /usr/include/stdlib.h:24:0,
from stokes.c:19:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=F77 --mode=compile f77 -g -O2 -fstack-protector-strong -c -o CW263.lo CW263.f
/bin/bash ../libtool --silent --tag=F77 --mode=link f77 -g -O2 -fstack-protector-strong -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libstokes2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libstokes2D_la-stokes.lo CW263.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libstokes3D_la-stokes.lo `test -f 'stokes.c' || echo './'`stokes.c
In file included from /usr/include/stdlib.h:24:0,
from stokes.c:19:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=F77 --mode=link f77 -g -O2 -fstack-protector-strong -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libstokes3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libstokes3D_la-stokes.lo CW263.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libbubbles2D_la-bubbles.lo `test -f 'bubbles.c' || echo './'`bubbles.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from ../src/particle.h:27,
from particulatecommon.h:20,
from bubbles.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
bubbles.c: In function 'bubble_fraction_init':
bubbles.c:421:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
GFS_PARTICULATE_FIELD (v)->voidfraction_func = voidfraction_from_bubbles;
^
bubbles.c: In function 'bubble_fraction_dt_init':
bubbles.c:474:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
GFS_PARTICULATE_FIELD (o)->voidfraction_func = dVpdt_from_particles;
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libbubbles2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libbubbles2D_la-bubbles.lo libparticulatecommon2D.la ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libbubbles3D_la-bubbles.lo `test -f 'bubbles.c' || echo './'`bubbles.c
In file included from /usr/include/stdio.h:27:0,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from ../src/particle.h:27,
from particulatecommon.h:20,
from bubbles.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
bubbles.c: In function 'bubble_fraction_init':
bubbles.c:421:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
GFS_PARTICULATE_FIELD (v)->voidfraction_func = voidfraction_from_bubbles;
^
bubbles.c: In function 'bubble_fraction_dt_init':
bubbles.c:474:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
GFS_PARTICULATE_FIELD (o)->voidfraction_func = dVpdt_from_particles;
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o libbubbles3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libbubbles3D_la-bubbles.lo libparticulatecommon3D.la ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm
ar: `u' modifier ignored since `D' is the default (see `U')
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o rsurface2kdt-rsurface2kdt.o `test -f 'rsurface2kdt.c' || echo './'`rsurface2kdt.c
In file included from /usr/include/stdlib.h:24:0,
from rsurface2kdt.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o rsurface2kdt-rsurface.o `test -f 'rsurface.c' || echo './'`rsurface.c
In file included from /usr/include/stdio.h:27:0,
from rsurface.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
In file included from rsurface.c:5:0:
rsurface.h:16:1: warning: no semicolon at end of struct or union
} RSurfaceSum;
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -o rsurface2kdt rsurface2kdt-rsurface2kdt.o rsurface2kdt-rsurface.o -LRStarTree -lcSmRST -Lkdt -lkdt -lm
libtool: warning: '-version-info' is ignored for programs
libtool: warning: '-release' is ignored for programs
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
Making all in tools
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfs2oogl2D-gfs2oogl.o `test -f 'gfs2oogl.c' || echo './'`gfs2oogl.c
In file included from /usr/include/math.h:26:0,
from gfs2oogl.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
gfs2oogl.c: In function 'main':
gfs2oogl.c:891:7: warning: 'g_basename' is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations]
streamname = g_strdup (g_basename (optarg));
^
In file included from /usr/include/glib-2.0/glib.h:48:0,
from /usr/include/gts.h:24,
from ../src/init.h:23,
from gfs2oogl.c:31:
/usr/include/glib-2.0/glib/gfileutils.h:168:14: note: declared here
const gchar *g_basename (const gchar *file_name);
^
gfs2oogl.c:706:28: warning: variable 'lines' set but not used [-Wunused-but-set-variable]
gboolean ribbon = FALSE, lines = FALSE, squares = FALSE;
^
gfs2oogl.c:706:12: warning: variable 'ribbon' set but not used [-Wunused-but-set-variable]
gboolean ribbon = FALSE, lines = FALSE, squares = FALSE;
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o gfs2oogl2D gfs2oogl2D-gfs2oogl.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfs2oogl.o gfs2oogl.c
In file included from /usr/include/math.h:26:0,
from gfs2oogl.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
gfs2oogl.c: In function 'main':
gfs2oogl.c:891:7: warning: 'g_basename' is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations]
streamname = g_strdup (g_basename (optarg));
^
In file included from /usr/include/glib-2.0/glib.h:48:0,
from /usr/include/gts.h:24,
from ../src/init.h:23,
from gfs2oogl.c:31:
/usr/include/glib-2.0/glib/gfileutils.h:168:14: note: declared here
const gchar *g_basename (const gchar *file_name);
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o gfs2oogl3D gfs2oogl.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o streamanime.o streamanime.c
In file included from /usr/include/math.h:26:0,
from streamanime.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o streamanime streamanime.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ppmcombine-ppmcombine.o `test -f 'ppmcombine.c' || echo './'`ppmcombine.c
In file included from /usr/include/math.h:26:0,
from ppmcombine.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
ppmcombine.c: In function 'main':
ppmcombine.c:36:12: warning: variable 'verbose' set but not used [-Wunused-but-set-variable]
gboolean verbose = FALSE;
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o ppmcombine ppmcombine-ppmcombine.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscompare2D-gfscompare.o `test -f 'gfscompare.c' || echo './'`gfscompare.c
In file included from /usr/include/math.h:26:0,
from gfscompare.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
gfscompare.c: In function 'main':
gfscompare.c:319:12: warning: variable 'no_check' set but not used [-Wunused-but-set-variable]
gboolean no_check = FALSE;
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o gfscompare2D gfscompare2D-gfscompare.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscompare.o gfscompare.c
In file included from /usr/include/math.h:26:0,
from gfscompare.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
gfscompare.c: In function 'main':
gfscompare.c:319:12: warning: variable 'no_check' set but not used [-Wunused-but-set-variable]
gboolean no_check = FALSE;
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o gfscompare3D gfscompare.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscombine2D-gfscombine.o `test -f 'gfscombine.c' || echo './'`gfscombine.c
In file included from /usr/include/math.h:26:0,
from gfscombine.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o gfscombine2D gfscombine2D-gfscombine.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscombine.o gfscombine.c
In file included from /usr/include/math.h:26:0,
from gfscombine.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o gfscombine3D gfscombine.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfsjoin2D-gfsjoin2.o `test -f 'gfsjoin2.c' || echo './'`gfsjoin2.c
In file included from /usr/include/stdlib.h:24:0,
from gfsjoin2.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o gfsjoin2D gfsjoin2D-gfsjoin2.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfsjoin2.o gfsjoin2.c
In file included from /usr/include/stdlib.h:24:0,
from gfsjoin2.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o gfsjoin3D gfsjoin2.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o shapes.o shapes.c
In file included from /usr/include/stdlib.h:24:0,
from shapes.c:20:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
shapes.c:288:13: warning: 'surface_add_rectangular_channel_shape' defined but not used [-Wunused-function]
static void surface_add_rectangular_channel_shape (GtsSurface * s,
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o shapes shapes.o -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
Making all in test
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
Making all in doc
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
ls ../src/*.[ch] | awk 'BEGIN{print "reference: \\"}{ print "\t" $1 " \\"}' > Makefile.deps
Making all in tutorial
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
awk -f depend.awk file="tutorial" < tutorial.tex > Makefile.deps
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
Making all in examples
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o classes-classes.o `test -f 'classes.c' || echo './'`classes.c
In file included from /usr/include/string.h:25:0,
from classes.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o classes-init.o `test -f '../../src/init.c' || echo './'`../../src/init.c
../../src/init.c:33:0: warning: "_GNU_SOURCE" redefined
# define _GNU_SOURCE
^
<command-line>:0:0: note: this is the location of the previous definition
In file included from /usr/include/fenv.h:25:0,
from ../../src/init.c:34:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
../../src/init.c: In function 'gfs_init':
../../src/init.c:416:5: warning: 'MPI_Errhandler_set' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations]
MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL);
^
In file included from ../../src/utils.h:34:0,
from ../../src/boundary.h:24,
from ../../src/init.c:49:
/usr/lib/openmpi/include/mpi.h:1339:20: note: declared here
OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler)
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o classes classes-classes.o classes-init.o ../../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o modules-modules.o `test -f 'modules.c' || echo './'`modules.c
In file included from /usr/include/limits.h:25:0,
from /usr/lib/gcc/arm-linux-gnueabihf/5/include-fixed/limits.h:168,
from /usr/lib/gcc/arm-linux-gnueabihf/5/include-fixed/syslimits.h:7,
from /usr/lib/gcc/arm-linux-gnueabihf/5/include-fixed/limits.h:34,
from /usr/lib/arm-linux-gnueabihf/glib-2.0/include/glibconfig.h:11,
from /usr/include/glib-2.0/glib/gtypes.h:32,
from /usr/include/glib-2.0/glib/galloca.h:32,
from /usr/include/glib-2.0/glib.h:30,
from /usr/include/glib-2.0/gmodule.h:28,
from modules.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o modules modules-modules.o ../../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
./modules ../../modules/*.la /usr/lib/arm-linux-gnueabihf/gerris/*.so | LC_ALL=C sort | uniq > modules.list
(./classes && sh ./modulesyms.sh ../../modules /usr/lib/arm-linux-gnueabihf/gerris) | LC_ALL=C sort > gerris.dic
echo "# Language file for source-highlight" > gfs.lang
echo "# Generated automatically by classes.c" >> gfs.lang
awk '{ printf ("classname = \"%s\"\n", $1) }' < gerris.dic >> gfs.lang
echo "include \"/usr/share/source-highlight/cpp.lang\"" >> gfs.lang
echo "comment start \"#\"" >> gfs.lang
echo "redef preproc = \"C preprocessor command is not compatible with the use of # as comment character in GTS\"" >> gfs.lang
echo "(defvar gfs-abbrevs '(" > gfs-keywords.el
awk '{ printf ("\"%s\"\n", $1) }' < gerris.dic >> gfs-keywords.el
echo ")" >> gfs-keywords.el
echo "\"Gerris keywords automatically generated by classes.c.\")" >> gfs-keywords.el
echo "(defvar gfs-modules '(" >> gfs-keywords.el
awk '{ printf ("\"%s\"\n", $1) }' < modules.list >> gfs-keywords.el
echo ")" >> gfs-keywords.el
echo "\"Gerris modules automatically generated by modules.c.\")" >> gfs-keywords.el
echo "(provide 'gfs-keywords)" >> gfs-keywords.el
sh ./gfs.php.sh > gfs.php
make all-am
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make[5]: Nothing to be done for 'all-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
Making all in manpages
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o autoclass-autoclass.o `test -f 'autoclass.c' || echo './'`autoclass.c
In file included from /usr/include/string.h:25:0,
from autoclass.c:1:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
autoclass.c: In function 'main':
autoclass.c:6:21: warning: variable 'klass' set but not used [-Wunused-but-set-variable]
GtsObjectClass ** klass;
^
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o autoclass-init.o `test -f '../src/init.c' || echo './'`../src/init.c
../src/init.c:33:0: warning: "_GNU_SOURCE" redefined
# define _GNU_SOURCE
^
<command-line>:0:0: note: this is the location of the previous definition
In file included from /usr/include/fenv.h:25:0,
from ../src/init.c:34:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
../src/init.c: In function 'gfs_init':
../src/init.c:416:5: warning: 'MPI_Errhandler_set' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations]
MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL);
^
In file included from ../src/utils.h:34:0,
from ../src/boundary.h:24,
from ../src/init.c:49:
/usr/lib/openmpi/include/mpi.h:1339:20: note: declared here
OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler)
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -o autoclass autoclass-autoclass.o autoclass-init.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
Making all in desktop
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
Making all in debian
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_auto_test -a -O--parallel
fakeroot debian/rules binary-arch
dh binary-arch --parallel --with autoreconf
dh_auto_test -a -O--parallel
dh_testroot -a -O--parallel
dh_prep -a -O--parallel
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_auto_install
make -j1 install DESTDIR=/<<BUILDDIR>>/gerris-20131206\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
Making install in src
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make install-am
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../libtool --silent --mode=install /usr/bin/install -c libgfs2D.la libgfs3D.la '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/bash ../libtool --silent --mode=install /usr/bin/install -c gerris2D gerris3D '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/include'
/usr/bin/install -c -m 644 gfs.h '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/include'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 gerris2D.pc gerris3D.pc '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
/usr/bin/install -c -m 644 m4.awk '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/include/gerris'
/usr/bin/install -c -m 644 ftt.h fluid.h variable.h output.h solid.h poisson.h advection.h boundary.h mpi_boundary.h timestep.h domain.h init.h refine.h event.h simulation.h graphic.h adaptive.h source.h tension.h vof.h utils.h ocean.h wave.h levelset.h isocube.h cartesian.h surface.h unstructured.h map.h river.h moving.h balance.h metric.h particle.h version.h spatial.h function.h '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/include/gerris'
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
Making install in modules
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
Making install in RStarTree
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
Making install in kdt
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/bash ../../libtool --silent --mode=install /usr/bin/install -c xyz2kdt kdt2kdt kdtquery '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
Making install in fes2004
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
Making install in wavewatch
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
Making install in culvert
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/bash ../libtool --silent --mode=install /usr/bin/install -c rsurface2kdt '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/gerris'
/bin/bash ../libtool --silent --mode=install /usr/bin/install -c libterrain2D.la libterrain3D.la libparticulates2D.la libparticulates3D.la libokada2D.la libokada3D.la libdf33D.la libelectrohydro2D.la libelectrohydro3D.la libskewsymmetric2D.la libskewsymmetric3D.la libtopics2D.la libtopics3D.la libculvert2D.la liblayered2D.la libtide2D.la libtide3D.la libstokes2D.la libstokes3D.la libbubbles2D.la libbubbles3D.la '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/gerris'
libtool: warning: relinking 'libterrain2D.la'
libtool: warning: relinking 'libterrain3D.la'
libtool: warning: relinking 'libparticulates2D.la'
libtool: warning: relinking 'libparticulates3D.la'
libtool: warning: relinking 'libokada2D.la'
libtool: warning: relinking 'libokada3D.la'
libtool: warning: relinking 'libdf33D.la'
libtool: warning: relinking 'libelectrohydro2D.la'
libtool: warning: relinking 'libelectrohydro3D.la'
libtool: warning: relinking 'libskewsymmetric2D.la'
libtool: warning: relinking 'libskewsymmetric3D.la'
libtool: warning: relinking 'libtopics2D.la'
libtool: warning: relinking 'libtopics3D.la'
libtool: warning: relinking 'libculvert2D.la'
libtool: warning: relinking 'liblayered2D.la'
libtool: warning: relinking 'libtide2D.la'
libtool: warning: relinking 'libtide3D.la'
libtool: warning: relinking 'libstokes2D.la'
libtool: warning: relinking 'libstokes3D.la'
libtool: warning: relinking 'libbubbles2D.la'
libtool: warning: relinking 'libbubbles3D.la'
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf/gerris'
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
Making install in tools
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/bash ../libtool --silent --mode=install /usr/bin/install -c gfs2oogl2D gfs2oogl3D streamanime ppmcombine gfscompare2D gfscompare3D gfscombine2D gfscombine3D gfsjoin2D gfsjoin3D shapes '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/usr/bin/install -c darcs2dist bat2gts ppm2mpeg ppm2theora ppm2video gfs2gfs gfsjoin gfsplot '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
Making install in test
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
Making install in doc
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
Making install in tutorial
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
Making install in examples
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make install-am
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make[6]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/usr/bin/install -c gfs2doc gfs-highlight gfsxref '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
/usr/bin/install -c -m 644 gfs2tex.py gfs.lang gerris.dic gfs-keywords.el gfs-mode.el gfs.sty gfs.hva kaltura.sh gfs.php '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
make[6]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
Making install in manpages
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[5]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 bat2gts.1 gerris2D.1 gerris3D.1 gfs2gfs.1 gfs2oogl2D.1 gfs2oogl3D.1 gfscompare2D.1 gfscompare3D.1 gfs-config.1 gfs-highlight.1 gfsjoin.1 gfsxref.1 ppm2mpeg.1 ppmcombine.1 rsurfacequery.1 rsurfaceinfo.1 shapes.1 streamanime.1 xyz2rsurface.1 gfsjoin2D.1 gfsjoin3D.1 '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/man/man1'
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
Making install in desktop
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/icons/hicolor/48x48/mimetypes'
/usr/bin/install -c -m 644 application-gerris.png application-gerris-2D.png application-gerris-3D.png application-gerris-compressed.png '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/icons/hicolor/48x48/mimetypes'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/mime/packages'
/usr/bin/install -c -m 644 gerris.xml '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/mime/packages'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
Making install in debian
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
/usr/bin/install -c build_function libtool '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
find /<<BUILDDIR>>/gerris-20131206+dfsg/debian/ -name "*.la" | xargs rm -f
sed -i -e "s/mpicc/gcc/g" /<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris/build_function
rm -rf /<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin/darcs2dist
rm -rf /<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin/gfs2doc
make[1]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_install -a -O--parallel
dh_installdocs -a -O--parallel
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_installchangelogs ChangeLog
make[1]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_installman -a -O--parallel
dh_lintian -a -O--parallel
dh_icons -a -O--parallel
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_strip_nondeterminism -a -O--parallel
dh_compress -a -O--parallel
dh_fixperms -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/gerris/usr/bin/gfsjoin3D debian/gerris/usr/bin/gfsjoin2D debian/gerris/usr/bin/gfscompare3D debian/gerris/usr/bin/gfscombine3D debian/gerris/usr/bin/ppmcombine debian/gerris/usr/bin/gfs2oogl3D debian/gerris/usr/bin/shapes debian/gerris/usr/bin/gerris3D debian/gerris/usr/bin/gfs2oogl2D debian/gerris/usr/bin/gfscombine2D debian/gerris/usr/bin/gerris2D debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes2D-1.3.so.2.0.0 debian/gerris/usr/bin/gfscompare2D debian/gerris/usr/bin/streamanime debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes3D-1.3.so.2.0.0 were not linked against libgthread-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes2D-1.3.so.2.0.0 debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes3D-1.3.so.2.0.0 were not linked against libgcc_s.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/gerris/usr/bin/gfsjoin3D debian/gerris/usr/bin/gfsjoin2D debian/gerris/usr/bin/gfscompare3D debian/gerris/usr/bin/gfscombine3D debian/gerris/usr/bin/ppmcombine debian/gerris/usr/bin/gfs2oogl3D debian/gerris/usr/bin/shapes debian/gerris/usr/bin/gerris3D debian/gerris/usr/bin/gfs2oogl2D debian/gerris/usr/bin/gfscombine2D debian/gerris/usr/bin/gerris2D debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes2D-1.3.so.2.0.0 debian/gerris/usr/bin/gfscompare2D debian/gerris/usr/bin/streamanime debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes3D-1.3.so.2.0.0 were not linked against libgmodule-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libgfs-1.3-2/usr/lib/arm-linux-gnueabihf/libgfs3D-1.3.so.2.0.0 debian/libgfs-1.3-2/usr/lib/arm-linux-gnueabihf/libgfs2D-1.3.so.2.0.0 were not linked against libgthread-2.0.so.0 (they use none of the library's symbols)
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: Depends field of package libgfs-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'gerris-dbgsym' in '../gerris-dbgsym_20131206+dfsg-8_armhf.deb'.
dpkg-deb: building package 'gerris' in '../gerris_20131206+dfsg-8_armhf.deb'.
dpkg-deb: building package 'libgfs-1.3-2-dbgsym' in '../libgfs-1.3-2-dbgsym_20131206+dfsg-8_armhf.deb'.
dpkg-deb: building package 'libgfs-1.3-2' in '../libgfs-1.3-2_20131206+dfsg-8_armhf.deb'.
dpkg-deb: building package 'libgfs-dev' in '../libgfs-dev_20131206+dfsg-8_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../gerris_20131206+dfsg-8_armhf.changes
dpkg-genchanges: warning: package gerris-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package libgfs-1.3-2-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build gerris-20131206+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160529-0151
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
gerris_20131206+dfsg-8_armhf.changes:
-------------------------------------
Format: 1.8
Date: Sun, 22 May 2016 21:05:21 +0200
Source: gerris
Binary: gerris libgfs-1.3-2 libgfs-dev
Architecture: armhf
Version: 20131206+dfsg-8
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Anton Gladky <gladk@debian.org>
Description:
gerris - Fluid Flow Solver
libgfs-1.3-2 - Fluid Flow Solver -- shared libraries
libgfs-dev - Fluid Flow Solver -- development libraries and headers
Closes: 815825
Changes:
gerris (20131206+dfsg-8) unstable; urgency=medium
.
* [07e7d30] Remove serial version of gerris. (Closes: #815825)
* [0d89c5d] Apply cme fix dpkg.
* [e94bd00] Simplify d/rules.
* [9e9d5c0] Recommend gfsview.
Checksums-Sha1:
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b1278bf53ae0df628bd4ed84c117e3387a1ba66c 280416 gerris_20131206+dfsg-8_armhf.deb
f7debabe71bff6ee7bcf70021d8bb8c2efbcabe5 1799954 libgfs-1.3-2-dbgsym_20131206+dfsg-8_armhf.deb
e05eff3a371adf398e5b6120e92695e2e25c37ab 469280 libgfs-1.3-2_20131206+dfsg-8_armhf.deb
a86d2d8684954b768574185bfd5a26128bc4bd8a 103004 libgfs-dev_20131206+dfsg-8_armhf.deb
Checksums-Sha256:
3fd252060736de081a59a578cef1428019c1e2675fcfd4c8d2a374589e14021c 354464 gerris-dbgsym_20131206+dfsg-8_armhf.deb
788c67aa40dd5191d871c15e464a81fa45b0832facd7240ad397499262a67305 280416 gerris_20131206+dfsg-8_armhf.deb
ff522289af88676583662a8b529f8bfbbebdc1c3356262f8dc4e3a792db5de0f 1799954 libgfs-1.3-2-dbgsym_20131206+dfsg-8_armhf.deb
ad6eb33e1a3b0f74dd351aa18021c8d75c525893771af8e9b45bb2d298eca77e 469280 libgfs-1.3-2_20131206+dfsg-8_armhf.deb
7f164636874ecd71f31eadeba8088f2559ed133159e45938fdced24534430ddc 103004 libgfs-dev_20131206+dfsg-8_armhf.deb
Files:
0e8ffdade67dca3d41b914a87ff7abef 354464 debug extra gerris-dbgsym_20131206+dfsg-8_armhf.deb
530c02d945fbe0e46c96003fdf52dfd5 280416 science optional gerris_20131206+dfsg-8_armhf.deb
485c9000747419cdfcea0a233a040341 1799954 debug extra libgfs-1.3-2-dbgsym_20131206+dfsg-8_armhf.deb
d22063b8a6c6ebcf0051efa03e1571a8 469280 devel optional libgfs-1.3-2_20131206+dfsg-8_armhf.deb
dc2a1269005754a76c8b4d8c04fb5d7c 103004 libdevel optional libgfs-dev_20131206+dfsg-8_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
gerris-dbgsym_20131206+dfsg-8_armhf.deb
---------------------------------------
new debian package, version 2.0.
size 354464 bytes: control archive=1459 bytes.
1162 bytes, 13 lines control
2014 bytes, 19 lines md5sums
Package: gerris-dbgsym
Source: gerris
Version: 20131206+dfsg-8
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 525
Depends: gerris (= 20131206+dfsg-8)
Section: debug
Priority: extra
Homepage: http://gfs.sourceforge.net/
Description: Debug symbols for gerris
Auto-Built-Package: debug-symbols
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drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/share/doc/gerris-dbgsym -> gerris
gerris_20131206+dfsg-8_armhf.deb
--------------------------------
new debian package, version 2.0.
size 280416 bytes: control archive=3095 bytes.
1279 bytes, 31 lines control
4534 bytes, 71 lines md5sums
50 bytes, 2 lines shlibs
60 bytes, 2 lines triggers
Package: gerris
Version: 20131206+dfsg-8
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 1008
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libgfortran3 (>= 4.6), libgfs-1.3-2, libglib2.0-0 (>= 2.12.0), libgts-0.7-5 (>= 0.7.6), libopenmpi1.10
Recommends: gfsview
Suggests: python
Breaks: gerris-mpi (<< 20131206+dfsg-7)
Replaces: gerris-mpi (<< 20131206+dfsg-7)
Section: science
Priority: optional
Homepage: http://gfs.sourceforge.net/
Description: Fluid Flow Solver
Gerris is a system for the solution of the partial differential
equations describing fluid flow.
.
A brief summary of its main (current) features:
.
* Solves the time-dependent incompressible variable-density Euler,
Stokes or Navier-Stokes equations
* Adaptive mesh refinement: the resolution is adapted dynamically to
the features of the flow
* Entirely automatic mesh generation in complex geometries
* Second-order in space and time
* Unlimited number of advected/diffused passive tracers
* Flexible specification of additional source terms
* Portable parallel support using the MPI library
* Volume of Fluid advection scheme for interfacial flows
.
This package has MPI support built in.
drwxr-xr-x root/root 0 2016-05-29 01:49 ./
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drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/gerris/
lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes2D-1.3.so.2 -> libstokes2D-1.3.so.2.0.0
-rw-r--r-- root/root 30328 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes2D-1.3.so.2.0.0
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lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes2D.so -> libstokes2D-1.3.so.2.0.0
lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes3D-1.3.so.2 -> libstokes3D-1.3.so.2.0.0
-rw-r--r-- root/root 30328 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes3D-1.3.so.2.0.0
-rw-r--r-- root/root 27012 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes3D.a
lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes3D.so -> libstokes3D-1.3.so.2.0.0
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lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/gerris/gfs2tex.py -> ../../share/gerris/lib/gfs2tex.py
lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/gerris/m4.awk -> ../../share/gerris/lib/m4.awk
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/doc/
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-rw-r--r-- root/root 930 2013-12-06 15:51 ./usr/share/doc/gerris/AUTHORS
-rw-r--r-- root/root 4362 2013-12-06 15:51 ./usr/share/doc/gerris/NEWS.gz
-rw-r--r-- root/root 665 2013-12-06 15:51 ./usr/share/doc/gerris/README
-rw-r--r-- root/root 277 2013-12-06 15:51 ./usr/share/doc/gerris/THANKS
-rw-r--r-- root/root 1405 2013-12-06 15:51 ./usr/share/doc/gerris/TODO
-rw-r--r-- root/root 4066 2016-05-22 19:05 ./usr/share/doc/gerris/changelog.Debian.gz
-rw-r--r-- root/root 66168 2013-12-06 15:56 ./usr/share/doc/gerris/changelog.gz
-rw-r--r-- root/root 1937 2014-07-31 21:09 ./usr/share/doc/gerris/copyright
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/gerris/
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-rw-r--r-- root/root 5521 2016-05-29 01:49 ./usr/share/gerris/gerris.dic
-rw-r--r-- root/root 6565 2016-05-29 01:49 ./usr/share/gerris/gfs-keywords.el
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-rw-r--r-- root/root 545 2016-05-29 01:49 ./usr/share/gerris/gfs.hva
-rw-r--r-- root/root 10891 2016-05-29 01:49 ./usr/share/gerris/gfs.lang
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-rw-r--r-- root/root 210 2016-05-29 01:49 ./usr/share/gerris/gfs.sty
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lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/share/man/man1/gerris3D.1.gz -> gerris2D.1.gz
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-rw-r--r-- root/root 499 2016-05-29 01:49 ./usr/share/man/man1/gfs-highlight.1.gz
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lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/share/man/man1/gfs2oogl3D.1.gz -> gfs2oogl2D.1.gz
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lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/share/man/man1/gfscompare3D.1.gz -> gfscompare2D.1.gz
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lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/share/man/man1/ppm2mpeg.1.gz -> gerris2D.1.gz
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lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/share/man/man1/streamanime.1.gz -> gerris2D.1.gz
-rw-r--r-- root/root 554 2016-05-29 01:49 ./usr/share/man/man1/xyz2rsurface.1.gz
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/mime/
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-rw-r--r-- root/root 1048 2016-05-29 01:49 ./usr/share/mime/packages/gerris.xml
libgfs-1.3-2-dbgsym_20131206+dfsg-8_armhf.deb
---------------------------------------------
new debian package, version 2.0.
size 1799954 bytes: control archive=554 bytes.
484 bytes, 13 lines control
212 bytes, 2 lines md5sums
Package: libgfs-1.3-2-dbgsym
Source: gerris
Version: 20131206+dfsg-8
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 2051
Depends: libgfs-1.3-2 (= 20131206+dfsg-8)
Section: debug
Priority: extra
Homepage: http://gfs.sourceforge.net/
Description: Debug symbols for libgfs-1.3-2
Auto-Built-Package: debug-symbols
Build-Ids: 4eeff7d03c603aa23c652ff6ddd50f1046d60029 75cc86d220cb245d61b622c192f5db4bb90f9af5
drwxr-xr-x root/root 0 2016-05-29 01:50 ./
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/lib/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/lib/debug/
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drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/lib/debug/.build-id/4e/
-rw-r--r-- root/root 1054136 2016-05-29 01:49 ./usr/lib/debug/.build-id/4e/eff7d03c603aa23c652ff6ddd50f1046d60029.debug
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/lib/debug/.build-id/75/
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drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/
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lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/share/doc/libgfs-1.3-2-dbgsym -> libgfs-1.3-2
libgfs-1.3-2_20131206+dfsg-8_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 469280 bytes: control archive=916 bytes.
716 bytes, 19 lines control
469 bytes, 6 lines md5sums
56 bytes, 2 lines shlibs
60 bytes, 2 lines triggers
Package: libgfs-1.3-2
Source: gerris
Version: 20131206+dfsg-8
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 1588
Depends: libc6 (>= 2.4), libglib2.0-0 (>= 2.30.0), libgts-0.7-5 (>= 0.7.6+darcs121130), libopenmpi1.10
Breaks: libgfs-mpi-1.3-2 (<< 20131206+dfsg-7)
Replaces: libgfs-mpi-1.3-2 (<< 20131206+dfsg-7)
Section: devel
Priority: optional
Homepage: http://gfs.sourceforge.net/
Description: Fluid Flow Solver -- shared libraries
Gerris is a system for the solution of the partial differential
equations describing fluid flow.
.
This package contains the shared libraries for libgfs.
.
This package has MPI support built in.
drwxr-xr-x root/root 0 2016-05-29 01:50 ./
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drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/lib/
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lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/libgfs2D-1.3.so.2 -> libgfs2D-1.3.so.2.0.0
-rw-r--r-- root/root 749084 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/libgfs2D-1.3.so.2.0.0
lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/libgfs3D-1.3.so.2 -> libgfs3D-1.3.so.2.0.0
-rw-r--r-- root/root 787884 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/libgfs3D-1.3.so.2.0.0
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/doc/libgfs-1.3-2/
-rw-r--r-- root/root 4066 2016-05-22 19:05 ./usr/share/doc/libgfs-1.3-2/changelog.Debian.gz
-rw-r--r-- root/root 66168 2013-12-06 15:56 ./usr/share/doc/libgfs-1.3-2/changelog.gz
-rw-r--r-- root/root 1937 2014-07-31 21:09 ./usr/share/doc/libgfs-1.3-2/copyright
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/lintian/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 48 2011-04-06 06:12 ./usr/share/lintian/overrides/libgfs-1.3-2
libgfs-dev_20131206+dfsg-8_armhf.deb
------------------------------------
new debian package, version 2.0.
size 103004 bytes: control archive=1840 bytes.
742 bytes, 20 lines control
2759 bytes, 43 lines md5sums
Package: libgfs-dev
Source: gerris
Version: 20131206+dfsg-8
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 318
Depends: libgfs-1.3-2 (= 20131206+dfsg-8), libgts-dev, libav-tools
Breaks: libgfs-mpi-dev (<< 20131206+dfsg-7)
Replaces: libgfs-mpi-dev (<< 20131206+dfsg-7)
Section: libdevel
Priority: optional
Homepage: http://gfs.sourceforge.net/
Description: Fluid Flow Solver -- development libraries and headers
Gerris is a system for the solution of the partial differential
equations describing fluid flow.
.
This package contains the headers and development libraries needed to
build applications using libgfs.
.
This package has MPI support built in.
drwxr-xr-x root/root 0 2016-05-29 01:50 ./
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/include/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/include/gerris/
-rw-r--r-- root/root 4867 2016-05-29 01:49 ./usr/include/gerris/adaptive.h
-rw-r--r-- root/root 3762 2016-05-29 01:49 ./usr/include/gerris/advection.h
-rw-r--r-- root/root 1490 2016-05-29 01:49 ./usr/include/gerris/balance.h
-rw-r--r-- root/root 10432 2016-05-29 01:49 ./usr/include/gerris/boundary.h
-rw-r--r-- root/root 2105 2016-05-29 01:49 ./usr/include/gerris/cartesian.h
-rw-r--r-- root/root 18544 2016-05-29 01:49 ./usr/include/gerris/domain.h
-rw-r--r-- root/root 10394 2016-05-29 01:49 ./usr/include/gerris/event.h
-rw-r--r-- root/root 11820 2016-05-29 01:49 ./usr/include/gerris/fluid.h
-rw-r--r-- root/root 23268 2016-05-29 01:49 ./usr/include/gerris/ftt.h
-rw-r--r-- root/root 7232 2016-05-29 01:49 ./usr/include/gerris/function.h
-rw-r--r-- root/root 4699 2016-05-29 01:49 ./usr/include/gerris/graphic.h
-rw-r--r-- root/root 1649 2016-05-29 01:49 ./usr/include/gerris/init.h
-rw-r--r-- root/root 4138 2016-05-29 01:49 ./usr/include/gerris/isocube.h
-rw-r--r-- root/root 1638 2016-05-29 01:49 ./usr/include/gerris/levelset.h
-rw-r--r-- root/root 3198 2016-05-29 01:49 ./usr/include/gerris/map.h
-rw-r--r-- root/root 5078 2016-05-29 01:49 ./usr/include/gerris/metric.h
-rw-r--r-- root/root 2675 2016-05-29 01:49 ./usr/include/gerris/moving.h
-rw-r--r-- root/root 1892 2016-05-29 01:49 ./usr/include/gerris/mpi_boundary.h
-rw-r--r-- root/root 3387 2016-05-29 01:49 ./usr/include/gerris/ocean.h
-rw-r--r-- root/root 10027 2016-05-29 01:49 ./usr/include/gerris/output.h
-rw-r--r-- root/root 1443 2016-05-29 01:49 ./usr/include/gerris/particle.h
-rw-r--r-- root/root 5385 2016-05-29 01:49 ./usr/include/gerris/poisson.h
-rw-r--r-- root/root 3333 2016-05-29 01:49 ./usr/include/gerris/refine.h
-rw-r--r-- root/root 3990 2016-05-29 01:49 ./usr/include/gerris/river.h
-rw-r--r-- root/root 5708 2016-05-29 01:49 ./usr/include/gerris/simulation.h
-rw-r--r-- root/root 3148 2016-05-29 01:49 ./usr/include/gerris/solid.h
-rw-r--r-- root/root 10086 2016-05-29 01:49 ./usr/include/gerris/source.h
-rw-r--r-- root/root 1870 2016-05-29 01:49 ./usr/include/gerris/spatial.h
-rw-r--r-- root/root 4599 2016-05-29 01:49 ./usr/include/gerris/surface.h
-rw-r--r-- root/root 4072 2016-05-29 01:49 ./usr/include/gerris/tension.h
-rw-r--r-- root/root 5180 2016-05-29 01:49 ./usr/include/gerris/timestep.h
-rw-r--r-- root/root 1589 2016-05-29 01:49 ./usr/include/gerris/unstructured.h
-rw-r--r-- root/root 10845 2016-05-29 01:49 ./usr/include/gerris/utils.h
-rw-r--r-- root/root 9866 2016-05-29 01:49 ./usr/include/gerris/variable.h
-rw-r--r-- root/root 195 2016-05-29 01:49 ./usr/include/gerris/version.h
-rw-r--r-- root/root 6340 2016-05-29 01:49 ./usr/include/gerris/vof.h
-rw-r--r-- root/root 2073 2016-05-29 01:49 ./usr/include/gerris/wave.h
-rw-r--r-- root/root 1525 2016-05-29 01:49 ./usr/include/gfs.h
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/lib/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/libgfs2D.so -> libgfs2D-1.3.so.2.0.0
lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/libgfs3D.so -> libgfs3D-1.3.so.2.0.0
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 274 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/pkgconfig/gerris2D.pc
-rw-r--r-- root/root 263 2016-05-29 01:49 ./usr/lib/arm-linux-gnueabihf/pkgconfig/gerris3D.pc
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/lib/x86_64-linux-gnu/
lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/x86_64-linux-gnu/libgfs2D-1.3.so -> libgfs2D-1.3.so.2.0.0
lrwxrwxrwx root/root 0 2016-05-29 01:49 ./usr/lib/x86_64-linux-gnu/libgfs3D-1.3.so -> libgfs3D-1.3.so.2.0.0
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-05-29 01:49 ./usr/share/doc/libgfs-dev/
-rw-r--r-- root/root 4066 2016-05-22 19:05 ./usr/share/doc/libgfs-dev/changelog.Debian.gz
-rw-r--r-- root/root 66168 2013-12-06 15:56 ./usr/share/doc/libgfs-dev/changelog.gz
-rw-r--r-- root/root 1937 2014-07-31 21:09 ./usr/share/doc/libgfs-dev/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 88740
Build-Time: 1733
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 578
Job: gerris_20131206+dfsg-8
Machine Architecture: armhf
Package: gerris
Package-Time: 2357
Source-Version: 20131206+dfsg-8
Space: 88740
Status: successful
Version: 20131206+dfsg-8
--------------------------------------------------------------------------------
Finished at 20160529-0151
Build needed 00:39:17, 88740k disc space