gerris →
20131206+dfsg-18+b1 →
armhf → 2017-12-13 19:53:50
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| gerris 20131206+dfsg-18+b1 (armhf) Wed, 13 Dec 2017 19:12:03 +0000 |
+==============================================================================+
Package: gerris
Version: 20131206+dfsg-18+b1
Source Version: 20131206+dfsg-18
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-e637bfba-12d1-4017-8ea6-170a668a5487' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.2 MB]
Fetched 22.7 MB in 25s (892 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http: aptMethod::Configuration: could not load seccomp policy: Invalid argument
W: store: aptMethod::Configuration: could not load seccomp policy: Invalid argument
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'gerris' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-science/packages/gerris.git
Please use:
git clone https://anonscm.debian.org/git/debian-science/packages/gerris.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2853 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main gerris 20131206+dfsg-18 (dsc) [2395 B]
Get:2 http://172.17.0.1/private buster-staging/main gerris 20131206+dfsg-18 (tar) [2834 kB]
Get:3 http://172.17.0.1/private buster-staging/main gerris 20131206+dfsg-18 (diff) [16.9 kB]
Fetched 2853 kB in 0s (7466 kB/s)
Download complete and in download only mode
W: http: aptMethod::Configuration: could not load seccomp policy: Invalid argument
I: NOTICE: Log filtering will replace 'build/gerris-5gFgYG/gerris-20131206+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gerris-5gFgYG' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-WPx8m8/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-WPx8m8/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-WPx8m8/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (3047 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: copy: aptMethod::Configuration: could not load seccomp policy: Invalid argument
W: store: aptMethod::Configuration: could not load seccomp policy: Invalid argument
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 55 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (21.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15134 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
W: copy: aptMethod::Configuration: could not load seccomp policy: Invalid argument
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: autotools-dev, debhelper (>= 10), dh-exec, gfortran, libglib2.0-dev, libgsl0-dev, libgts-bin (>= 0.7.6+darcs121130-1.2), libgts-dev (>= 0.7.6+darcs121130-1.2), libnetcdf-dev, mpi-default-dev, python
Filtered Build-Depends: autotools-dev, debhelper (>= 10), dh-exec, gfortran, libglib2.0-dev, libgsl0-dev, libgts-bin (>= 0.7.6+darcs121130-1.2), libgts-dev (>= 0.7.6+darcs121130-1.2), libnetcdf-dev, mpi-default-dev, python
dpkg-deb: building package 'sbuild-build-depends-gerris-dummy' in '/<<BUILDDIR>>/resolver-WPx8m8/apt_archive/sbuild-build-depends-gerris-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-gerris-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ Sources [568 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ Packages [652 B]
Fetched 2553 B in 0s (3193 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: copy: aptMethod::Configuration: could not load seccomp policy: Invalid argument
W: store: aptMethod::Configuration: could not load seccomp policy: Invalid argument
Reading package lists...
Install gerris build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-7 debhelper
dh-autoreconf dh-exec dh-python dh-strip-nondeterminism file g++-7 gcc-7
gcc-7-base gettext gettext-base gfortran gfortran-7 groff-base hdf5-helpers
intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan4 libatomic1
libbsd0 libcc1-0 libcilkrts5 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev
libelf1 libexpat1 libfile-stripnondeterminism-perl libgcc-7-dev libgcc1
libgfortran-7-dev libgfortran4 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgomp1 libgsl-dev libgsl23 libgslcblas0
libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgts-dev libhdf5-100
libhdf5-cpp-100 libhdf5-dev libhwloc-dev libhwloc-plugins libhwloc5
libibverbs-dev libibverbs1 libicu57 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libnetcdf-dev
libnetcdf13 libnghttp2-14 libnl-3-200 libnl-route-3-200 libopenmpi-dev
libopenmpi2 libpciaccess0 libpcre16-3 libpcre3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpsl5 libpython-stdlib libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib librtmp1 libsigsegv2 libssh2-1 libstdc++-7-dev
libstdc++6 libsz2 libtimedate-perl libtool libubsan0 libxml2 m4 man-db
mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-common pkg-config
po-debconf python python-minimal python2.7 python2.7-minimal python3
python3-minimal python3.6 python3.6-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-7-locales dh-make dwz gcc-7-doc libstdc++6-7-dbg libgcc1-dbg
libgomp1-dbg libitm1-dbg libatomic1-dbg libasan4-dbg liblsan0-dbg
libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg
gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-7-doc
libgfortran4-dbg libcoarrays-dev groff libcurl4-doc libgnutls28-dev
libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
libglib2.0-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
krb5-doc krb5-user libgts-doc libhdf5-doc libhwloc-contrib-plugins
libtool-doc netcdf-bin netcdf-doc openmpi-doc pciutils libstdc++-7-doc
gcj-jdk m4-doc less www-browser apparmor opencl-icd libmail-box-perl
python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk
python3-venv python3.6-venv python3.6-doc
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl shared-mime-info xdg-user-dirs
krb5-locales openmpi-bin publicsuffix libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-exec dh-python dh-strip-nondeterminism file gettext
gettext-base gfortran gfortran-7 groff-base hdf5-helpers intltool-debian
libaec-dev libaec0 libarchive-zip-perl libbsd0 libcroco3 libcurl3-gnutls
libcurl4-gnutls-dev libelf1 libexpat1 libfile-stripnondeterminism-perl
libgfortran-7-dev libgfortran4 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgsl-dev libgsl23 libgslcblas0
libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgts-dev libhdf5-100
libhdf5-cpp-100 libhdf5-dev libhwloc-dev libhwloc-plugins libhwloc5
libibverbs-dev libibverbs1 libicu57 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libnetcdf-dev
libnetcdf13 libnghttp2-14 libnl-3-200 libnl-route-3-200 libopenmpi-dev
libopenmpi2 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpsl5 libpython-stdlib libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib librtmp1 libsigsegv2 libssh2-1 libsz2 libtimedate-perl
libtool libxml2 m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1
openmpi-common pkg-config po-debconf python python-minimal python2.7
python2.7-minimal python3 python3-minimal python3.6 python3.6-minimal
sbuild-build-depends-gerris-dummy zlib1g-dev
The following packages will be upgraded:
cpp-7 g++-7 gcc-7 gcc-7-base libasan4 libatomic1 libcc1-0 libcilkrts5
libgcc-7-dev libgcc1 libgomp1 libpcre3 libstdc++-7-dev libstdc++6 libubsan0
15 upgraded, 108 newly installed, 0 to remove and 40 not upgraded.
Need to get 74.2 MB of archives.
After this operation, 190 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WPx8m8/apt_archive ./ sbuild-build-depends-gerris-dummy 0.invalid.0 [944 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 7.2.0-17 [63.4 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf gcc-7-base armhf 7.2.0-17 [183 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:7.2.0-17 [37.0 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 7.2.0-17 [6764 B]
Get:6 http://172.17.0.1/private buster-staging/main armhf libasan4 armhf 7.2.0-17 [301 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libubsan0 armhf 7.2.0-17 [106 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libcilkrts5 armhf 7.2.0-17 [35.3 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf cpp-7 armhf 7.2.0-17 [5135 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 7.2.0-17 [30.4 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-7 armhf 7.2.0-17 [5588 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf gcc-7 armhf 7.2.0-17 [5462 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-7-dev armhf 7.2.0-17 [670 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libstdc++-7-dev armhf 7.2.0-17 [1498 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 7.2.0-17 [327 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-3 [95.9 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.14 [178 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-4 [1012 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.14-4 [393 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.14-4 [1075 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.14-1 [40.7 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-2 [73.6 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.14-4 [1841 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.14-4 [293 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.14-1 [20.1 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.14-1 [155 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.4~rc1-1 [564 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.4~rc1-1 [1232 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.3-2 [35.7 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.4~rc1-1 [1833 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.4~rc1-1 [224 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.3-2 [19.1 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf dh-python all 2.20170125 [86.8 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.3-2 [22.1 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libpcre3 armhf 2:8.39-8 [313 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.2 [12.1 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-5.1 [608 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1+nmu1 [74.2 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 15 [16.2 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.1-1 [2653 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.10.9 [975 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.2.0-17 [190 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.2.0-17 [232 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.2.0-17 [5448 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.2.0-1d1 [1352 B]
Get:69 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-4 [36.0 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libaec0 armhf 0.3.2-2 [19.3 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.2-2 [58.6 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.2-2 [116 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.2-2 [263 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.2-2 [133 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.28.0-1 [72.3 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.19.1-4 [43.2 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.57.0-1 [274 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libcurl4-gnutls-dev armhf 7.57.0-1 [344 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.1 [159 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.54.1-1 [2541 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.54.1-1 [1595 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.54.1-1 [1616 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-8 [234 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-8 [226 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-8 [150 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-8 [561 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf pkg-config armhf 0.29-4 [59.2 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.54.1-1 [2698 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.4+dfsg-6 [75.1 kB]
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Get:96 http://172.17.0.1/private buster-staging/main armhf libgts-bin armhf 0.7.6+darcs121130-4 [47.8 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libgts-dev armhf 0.7.6+darcs121130-4 [147 kB]
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Get:103 http://172.17.0.1/private buster-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 0.3.2-2 [17.3 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-4 [2109 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2 [386 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libhwloc5 armhf 1.11.8-1+rpi1 [85.6 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2 [159 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libhwloc-dev armhf 1.11.8-1+rpi1 [140 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libpciaccess0 armhf 0.13.4-1 [47.4 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-1 [35.4 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libhwloc-plugins armhf 1.11.8-1+rpi1 [15.1 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libnetcdf13 armhf 1:4.5.0-1 [333 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libnetcdf-dev armhf 1:4.5.0-1 [79.2 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libnl-3-200 armhf 3.2.27-2 [53.7 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libnl-route-3-200 armhf 3.2.27-2 [113 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf dh-exec armhf 0.23 [24.9 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libibverbs1 armhf 1.2.1-2 [35.4 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libibverbs-dev armhf 1.2.1-2 [104 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libopenmpi2 armhf 2.1.1-7+rpi1 [1744 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf openmpi-common all 2.1.1-7+rpi1 [154 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libopenmpi-dev armhf 2.1.1-7+rpi1 [1019 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf mpi-default-dev armhf 1.9 [4920 B]
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Setting up man-db (2.7.6.1-4) ...
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Processing triggers for libc-bin (2.25-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http: aptMethod::Configuration: could not load seccomp policy: Invalid argument
W: copy: aptMethod::Configuration: could not load seccomp policy: Invalid argument
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29.1-8+rpi1 dpkg-dev_1.19.0.4 g++-7_7.2.0-17 gcc-7_7.2.0-17 libc6-dev_2.25-2+rpi1 libstdc++-7-dev_7.2.0-17 libstdc++6_7.2.0-17 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1+nmu1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-8+rpi1 binutils-arm-linux-gnueabihf_2.29.1-8+rpi1 binutils-common_2.29.1-8+rpi1 bsdmainutils_9.0.14 bsdutils_1:2.30.2-0.1 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-17 dash_0.5.8-2.5 debconf_1.5.65 debhelper_10.10.9 debianutils_4.8.3 dh-autoreconf_15 dh-exec_0.23 dh-python_2.20170125 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.2-1+rpi1 dmsetup_2:1.02.145-4 dpkg_1.19.0.4 dpkg-dev_1.19.0.4 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 e2fsprogs-l10n_1.43.7-1 fakeroot_1.22-2 fdisk_2.30.2-0.1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1d1 g++-7_7.2.0-17 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-17 gcc-7-base_7.2.0-17 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gfortran_4:7.2.0-1d1 gfortran-7_7.2.0-17 gnupg_2.2.2-1+rpi1 gnupg-agent_2.2.2-1+rpi1 gnupg-l10n_2.2.2-1+rpi1 gnupg-utils_2.2.2-1+rpi1 gpg_2.2.2-1+rpi1 gpg-agent_2.2.2-1+rpi1 gpg-wks-client_2.2.2-1+rpi1 gpg-wks-server_2.2.2-1+rpi1 gpgconf_2.2.2-1+rpi1 gpgsm_2.2.2-1+rpi1 gpgv_2.2.2-1+rpi1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hdf5-helpers_1.10.0-patch1+docs-4 hostname_3.18 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libaec-dev_0.3.2-2 libaec0_0.3.2-2 libapparmor1_2.11.1-3 libapt-pkg5.0_1.6~alpha5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-17 libassuan0_2.4.4-1 libatomic1_7.2.0-17 libattr1_1:2.4.47-2 libaudit-common_1:2.8.1-2 libaudit1_1:2.8.1-2 libbinutils_2.29.1-8+rpi1 libblkid1_2.30.2-0.1 libbsd0_0.8.6-3 libbz2-1.0_1.0.6-8.1 libc-bin_2.25-2+rpi1 libc-dev-bin_2.25-2+rpi1 libc6_2.25-2+rpi1 libc6-dev_2.25-2+rpi1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.1 libcc1-0_7.2.0-17 libcilkrts5_7.2.0-17 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.5-1 libcurl3-gnutls_7.57.0-1 libcurl4-gnutls-dev_7.57.0-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1 libdebconfclient0_0.232 libdevmapper1.02.1_2:1.02.145-4 libdpkg-perl_1.19.0.4 libdrm-common_2.4.88-1+rpi1 libdrm2_2.4.88-1+rpi1 libelf1_0.170-0.1 libexpat1_2.2.3-2 libfakeroot_1.22-2 libfdisk1_2.30.2-0.1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-17 libgcc1_1:7.2.0-17 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libgfortran-7-dev_7.2.0-17 libgfortran4_7.2.0-17 libglib2.0-0_2.54.1-1 libglib2.0-bin_2.54.1-1 libglib2.0-data_2.54.1-1 libglib2.0-dev_2.54.1-1 libglib2.0-dev-bin_2.54.1-1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.16-1 libgomp1_7.2.0-17 libgpg-error0_1.27-5 libgsl-dev_2.4+dfsg-6 libgsl23_2.4+dfsg-6 libgslcblas0_2.4+dfsg-6 libgssapi-krb5-2_1.15.2-2 libgts-0.7-5_0.7.6+darcs121130-4 libgts-bin_0.7.6+darcs121130-4 libgts-dev_0.7.6+darcs121130-4 libhdf5-100_1.10.0-patch1+docs-4 libhdf5-cpp-100_1.10.0-patch1+docs-4 libhdf5-dev_1.10.0-patch1+docs-4 libhogweed4_3.3-2 libhwloc-dev_1.11.8-1+rpi1 libhwloc-plugins_1.11.8-1+rpi1 libhwloc5_1.11.8-1+rpi1 libibverbs-dev_1.2.1-2 libibverbs1_1.2.1-2 libicu57_57.1-8 libidn11_1.33-2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.1-2+b1 libisl15_0.18-1 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.2-0.1 libmpc3_1.0.3-2 libmpdec2_2.4.2-1 libmpfr4_3.1.6-1 libncurses5_6.0+20170902-1 libncursesw5_6.0+20170902-1 libnetcdf-dev_1:4.5.0-1 libnetcdf13_1:4.5.0-1 libnettle6_3.3-2 libnghttp2-14_1.28.0-1 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnpth0_1.5-3 libopenmpi-dev_2.1.1-7+rpi1 libopenmpi2_2.1.1-7+rpi1 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpciaccess0_0.13.4-1 libpcre16-3_2:8.39-8 libpcre3_2:8.39-8 libpcre3-dev_2:8.39-8 libpcre32-3_2:8.39-8 libpcrecpp0v5_2:8.39-8 libperl5.24_5.24.1-7 libperl5.26_5.26.1-2 libpipeline1_1.5.0-1 libplymouth4_0.9.3-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3 libpsl5_0.19.1-4 libpython-stdlib_2.7.14-1 libpython2.7-minimal_2.7.14-4 libpython2.7-stdlib_2.7.14-4 libpython3-stdlib_3.6.3-2 libpython3.6-minimal_3.6.4~rc1-1 libpython3.6-stdlib_3.6.4~rc1-1 libreadline7_7.0-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsmartcols1_2.30.2-0.1 libsqlite3-0_3.21.0-1 libss2_1.43.7-1 libssh2-1_1.8.0-1 libssl1.1_1.1.0g-2 libstdc++-7-dev_7.2.0-17 libstdc++6_7.2.0-17 libsystemd0_235-3 libsz2_0.3.2-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170902-1 libtool_2.4.6-2 libubsan0_7.2.0-17 libudev1_235-3 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1 libxml2_2.9.4+dfsg1-5.1 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-4 mawk_1.3.3-17 mime-support_3.60 mount_2.30.2-0.1 mpi-default-dev_1.9 multiarch-support_2.25-2+rpi1 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 ocl-icd-libopencl1_2.2.12-1 openmpi-common_2.1.1-7+rpi1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-2 perl-base_5.26.1-2 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-2 pinentry-curses_1.0.0-3 pkg-config_0.29-4 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.14-1 python-minimal_2.7.14-1 python2.7_2.7.14-4 python2.7-minimal_2.7.14-4 python3_3.6.3-2 python3-minimal_3.6.3-2 python3.6_3.6.4~rc1-1 python3.6-minimal_3.6.4~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gerris-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 systemd_235-3 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017c-1 udev_235-3 util-linux_2.30.2-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 23 20:51:51 2017 UTC
gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./gerris_20131206+dfsg-18.dsc
dpkg-source: info: extracting gerris in /<<BUILDDIR>>/gerris-20131206+dfsg
dpkg-source: info: unpacking gerris_20131206+dfsg.orig.tar.gz
dpkg-source: info: unpacking gerris_20131206+dfsg-18.debian.tar.xz
dpkg-source: info: applying 01_automake_doc_examples
dpkg-source: info: applying 02_fix_makefiles.patch
dpkg-source: info: applying 03_build_funct.patch
dpkg-source: info: applying 04_replace_ffmpeg_by_avconv.patch
dpkg-source: info: applying 05_reproducible_build.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 20131206+dfsg-18+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-e637bfba-12d1-4017-8ea6-170a668a5487
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package gerris
dpkg-buildpackage: info: source version 20131206+dfsg-18+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build gerris-20131206+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:50: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:50: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:108: installing './compile'
configure.ac:50: installing './missing'
doc/Makefile.am:9: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
doc/Makefile.am:12: warning: source file '$(top_srcdir)/src/init.c' is in a subdirectory,
doc/Makefile.am:12: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
doc/Makefile.am: installing './depcomp'
doc/examples/Makefile.am:118: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
doc/examples/Makefile.am:123: warning: source file '$(top_srcdir)/src/init.c' is in a subdirectory,
doc/examples/Makefile.am:123: but option 'subdir-objects' is disabled
parallel-tests: installing './test-driver'
modules/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
src/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
tools/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_auto_configure -- --enable-mpi
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --enable-mpi
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for mpicc... yes
checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking whether mpicc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of mpicc... none
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... mpicc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC -DPIC
checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gawk... (cached) mawk
checking for library containing strerror... none required
checking for ANSI C header files... (cached) yes
checking whether pointers can be stored in doubles... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GTS... yes
checking whether modules are supported... yes
checking for pkg-config... yes
checking for m4... yes
checking check whether m4 accepts the -P option... yes
checking for pj_fwd in -lproj... no
configure: WARNING: libproj not found. Map module will not be available.
checking proj_api.h usability... no
checking proj_api.h presence... no
checking for proj_api.h... no
checking for gsl-config... /usr/bin/gsl-config
checking for GSL - version >= 0.2.5... yes
checking for nc_open in -lnetcdf... yes
checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
checking for g77... no
checking for xlf... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... yes
checking if f77 supports -c -o file.o... yes
checking if f77 supports -c -o file.o... (cached) yes
checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking for ode-config... no
configure: WARNING: ODE not found. ode module will not be available.
checking for HYPRE_IJMatrixCreate in -lHYPRE... no
configure: WARNING: HYPRE not found. hypre Module won't be available.
checking for lis_initialize in -llis... no
configure: WARNING: lis not found. lis Module won't be available.
checking for FFTW3... no
checking fenv.h usability... yes
checking fenv.h presence... yes
checking for fenv.h... yes
checking for unistd.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking for getopt_long... yes
checking for g_mkdtemp... yes
checking for open_memstream... yes
checking for funopen... no
checking for open_memstream... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gerris2D.pc
config.status: creating src/gerris3D.pc
config.status: creating tools/Makefile
config.status: creating modules/Makefile
config.status: creating modules/RStarTree/Makefile
config.status: creating modules/kdt/Makefile
config.status: creating modules/fes2004/Makefile
config.status: creating modules/wavewatch/Makefile
config.status: creating modules/culvert/Makefile
config.status: creating test/Makefile
config.status: creating doc/Makefile
config.status: creating doc/tutorial/Makefile
config.status: creating doc/examples/Makefile
config.status: creating doc/manpages/Makefile
config.status: creating doc/examples/gfs2doc
config.status: creating doc/examples/gfs-highlight
config.status: creating doc/examples/crossref.sh
config.status: creating desktop/Makefile
config.status: creating debian/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
Configuration summary
System = arm-unknown-linux-gnueabihf
C Compiler = mpicc
C Flags = -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99
MPI enabled = yes
GModule support = yes
pkg-config = yes
m4 = yes
m4 options = -P
open_memstream = yes
Modules
map = no
tide = yes
stokes = yes
wavewatch = no
hypre = no
lis = no
agmg = no
ode = no
bubbles = yes
fft = no
make[1]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make all-recursive
make[2]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
Making all in src
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make all-am
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-ftt.lo `test -f 'ftt.c' || echo './'`ftt.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from ftt.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-fluid.lo `test -f 'fluid.c' || echo './'`fluid.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from fluid.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
fluid.c:126:20: warning: 'interpolate_1D2' defined but not used [-Wunused-function]
static GfsGradient interpolate_1D2 (FttCell * cell,
^~~~~~~~~~~~~~~
fluid.c: In function 'face_bilinear':
fluid.c:1151:37: warning: 'd[2]' is used uninitialized in this function [-Wuninitialized]
d1[0] = d[1]; d1[1] = d[0]; d1[2] = d[2];
~~~~~~^~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-variable.lo `test -f 'variable.c' || echo './'`variable.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from variable.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-output.lo `test -f 'output.c' || echo './'`output.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from output.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-solid.lo `test -f 'solid.c' || echo './'`solid.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from solid.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-poisson.lo `test -f 'poisson.c' || echo './'`poisson.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from poisson.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-advection.lo `test -f 'advection.c' || echo './'`advection.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from advection.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-boundary.lo `test -f 'boundary.c' || echo './'`boundary.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from boundary.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-mpi_boundary.lo `test -f 'mpi_boundary.c' || echo './'`mpi_boundary.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from mpi_boundary.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-timestep.lo `test -f 'timestep.c' || echo './'`timestep.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from timestep.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-domain.lo `test -f 'domain.c' || echo './'`domain.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from domain.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-init.lo `test -f 'init.c' || echo './'`init.c
init.c:33:0: warning: "_GNU_SOURCE" redefined
# define _GNU_SOURCE
<command-line>:0:0: note: this is the location of the previous definition
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/fenv.h:26,
from init.c:34:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-refine.lo `test -f 'refine.c' || echo './'`refine.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from refine.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-event.lo `test -f 'event.c' || echo './'`event.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from event.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-simulation.lo `test -f 'simulation.c' || echo './'`simulation.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from simulation.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-graphic.lo `test -f 'graphic.c' || echo './'`graphic.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from graphic.c:30:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
graphic.c: In function 'grow_curve':
graphic.c:1986:17: warning: variable 'p1' set but not used [-Wunused-but-set-variable]
FttVector p1;
^~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-adaptive.lo `test -f 'adaptive.c' || echo './'`adaptive.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from adaptive.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-source.lo `test -f 'source.c' || echo './'`source.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from source.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-tension.lo `test -f 'tension.c' || echo './'`tension.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from tension.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-vof.lo `test -f 'vof.c' || echo './'`vof.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from vof.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
vof.c: In function 'gfs_height_curvature':
vof.c:2619:11: warning: unused variable 'area' [-Wunused-variable]
gdouble area = gfs_vof_center (cell, t, &fc);
^~~~
vof.c: In function 'gfs_height_curvature_new':
vof.c:2871:11: warning: unused variable 'area' [-Wunused-variable]
gdouble area = gfs_vof_center (cell, GFS_VARIABLE_TRACER_VOF (t), &fc);
^~~~
At top level:
vof.c:1771:16: warning: 'face_value' defined but not used [-Wunused-function]
static gdouble face_value (FttCell * cell, FttDirection d, GfsVariable * v)
^~~~~~~~~~
vof.c:850:13: warning: 'youngs_normal' defined but not used [-Wunused-function]
static void youngs_normal (FttCell * cell, GfsVariable * v, FttVector * n)
^~~~~~~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-utils.lo `test -f 'utils.c' || echo './'`utils.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from utils.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-ocean.lo `test -f 'ocean.c' || echo './'`ocean.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from ocean.c:24:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
ocean.c: In function 'correct_normal_velocity':
ocean.c:45:15: warning: variable 'type' set but not used [-Wunused-but-set-variable]
FttFaceType type;
^~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-wave.lo `test -f 'wave.c' || echo './'`wave.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from wave.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-levelset.lo `test -f 'levelset.c' || echo './'`levelset.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from levelset.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-cartesian.lo `test -f 'cartesian.c' || echo './'`cartesian.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from cartesian.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-surface.lo `test -f 'surface.c' || echo './'`surface.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from simulation.h:27,
from surface.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-unstructured.lo `test -f 'unstructured.c' || echo './'`unstructured.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from unstructured.h:24,
from unstructured.c:24:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-map.lo `test -f 'map.c' || echo './'`map.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from advection.h:27,
from timestep.h:27,
from variable.h:29,
from map.h:27,
from map.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
map.c: In function 'gfs_map_read':
map.c:34:12: warning: variable 'class_changed' set but not used [-Wunused-but-set-variable]
gboolean class_changed = FALSE;
^~~~~~~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-river.lo `test -f 'river.c' || echo './'`river.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from river.c:55:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-moving.lo `test -f 'moving.c' || echo './'`moving.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from moving.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
In file included from moving.c:49:0:
moving2.c: In function 'second_order_face_fractions':
moving2.c:257:33: warning: variable 's1' set but not used [-Wunused-but-set-variable]
gdouble dt1, dt2, dto1, dto2, s1, s2;
^~
moving2.c: In function 'old_solid_fractions_from_children':
moving2.c:731:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for (i = 0; i < FTT_CELLS; i++)
^~~
moving2.c:735:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
gfs_cell_init_solid_fractions_from_children (cell);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-balance.lo `test -f 'balance.c' || echo './'`balance.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from event.h:27,
from balance.h:27,
from balance.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-metric.lo `test -f 'metric.c' || echo './'`metric.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from metric.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
metric.c:241:15: warning: 'kpu_2d_l4' defined but not used [-Wunused-variable]
static double kpu_2d_l4[17][3] = {
^~~~~~~~~
metric.c:221:15: warning: 'kpu_2d_l2' defined but not used [-Wunused-variable]
static double kpu_2d_l2[5][3] = {
^~~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-particle.lo `test -f 'particle.c' || echo './'`particle.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from particle.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -Wl,-z,relro -Wl,-z,now -o libgfs2D.la -rpath /usr/lib/arm-linux-gnueabihf libgfs2D_la-ftt.lo libgfs2D_la-fluid.lo libgfs2D_la-variable.lo libgfs2D_la-output.lo libgfs2D_la-solid.lo libgfs2D_la-poisson.lo libgfs2D_la-advection.lo libgfs2D_la-boundary.lo libgfs2D_la-mpi_boundary.lo libgfs2D_la-timestep.lo libgfs2D_la-domain.lo libgfs2D_la-init.lo libgfs2D_la-refine.lo libgfs2D_la-event.lo libgfs2D_la-simulation.lo libgfs2D_la-graphic.lo libgfs2D_la-adaptive.lo libgfs2D_la-source.lo libgfs2D_la-tension.lo libgfs2D_la-vof.lo libgfs2D_la-utils.lo libgfs2D_la-ocean.lo libgfs2D_la-wave.lo libgfs2D_la-levelset.lo libgfs2D_la-cartesian.lo libgfs2D_la-surface.lo libgfs2D_la-unstructured.lo libgfs2D_la-map.lo libgfs2D_la-river.lo libgfs2D_la-moving.lo libgfs2D_la-balance.lo libgfs2D_la-metric.lo libgfs2D_la-particle.lo -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ftt.lo ftt.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from ftt.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o fluid.lo fluid.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from fluid.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
fluid.c: In function 'gfs_cell_coarse_fine':
fluid.c:1918:42: warning: unused variable 'gz4' [-Wunused-variable]
double gz3 = g.z*(a[3] + a[7])/sa, gz4 = - g.z*(a[1] + a[5])/sa;
^~~
fluid.c:1918:14: warning: unused variable 'gz3' [-Wunused-variable]
double gz3 = g.z*(a[3] + a[7])/sa, gz4 = - g.z*(a[1] + a[5])/sa;
^~~
fluid.c:1916:42: warning: unused variable 'gy4' [-Wunused-variable]
double gy3 = g.y*(a[6] + a[7])/sa, gy4 = - g.y*(a[4] + a[5])/sa;
^~~
fluid.c:1916:14: warning: unused variable 'gy3' [-Wunused-variable]
double gy3 = g.y*(a[6] + a[7])/sa, gy4 = - g.y*(a[4] + a[5])/sa;
^~~
fluid.c:1914:42: warning: unused variable 'gx4' [-Wunused-variable]
double gx3 = g.x*(a[4] + a[6])/sa, gx4 = - g.x*(a[5] + a[7])/sa;
^~~
fluid.c:1914:14: warning: unused variable 'gx3' [-Wunused-variable]
double gx3 = g.x*(a[4] + a[6])/sa, gx4 = - g.x*(a[5] + a[7])/sa;
^~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o variable.lo variable.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from variable.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o output.lo output.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from output.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o solid.lo solid.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from solid.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
solid.c: In function 'set_solid_fractions_from_surface':
solid.c:561:21: warning: comparison between 'FttComponent {aka enum <anonymous>}' and 'enum <anonymous>' [-Wenum-compare]
for (c = 1; c < FTT_NEIGHBORS; c++)
^
In file included from solid.c:338:0:
At top level:
isocube.h:95:21: warning: 'corner' defined but not used [-Wunused-variable]
static FttDirection corner[8][3] = {
^~~~~~
isocube.h:66:18: warning: 'cvertex' defined but not used [-Wunused-variable]
static FttVector cvertex[8] = {
^~~~~~~
isocube.h:52:14: warning: 'connectv' defined but not used [-Wunused-variable]
static guint connectv[12][2][4] = {
^~~~~~~~
isocube.h:47:18: warning: 'edge' defined but not used [-Wunused-variable]
static FttVector edge[12][2] = {
^~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o poisson.lo poisson.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from poisson.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o advection.lo advection.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from advection.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o boundary.lo boundary.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from boundary.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o mpi_boundary.lo mpi_boundary.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from mpi_boundary.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o timestep.lo timestep.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from timestep.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o domain.lo domain.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from domain.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o init.lo init.c
init.c:33:0: warning: "_GNU_SOURCE" redefined
# define _GNU_SOURCE
<command-line>:0:0: note: this is the location of the previous definition
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/fenv.h:26,
from init.c:34:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o refine.lo refine.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from refine.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o event.lo event.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from event.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o simulation.lo simulation.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from simulation.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o graphic.lo graphic.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from graphic.c:30:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
In file included from graphic.c:42:0:
isocube.h:66:18: warning: 'cvertex' defined but not used [-Wunused-variable]
static FttVector cvertex[8] = {
^~~~~~~
isocube.h:52:14: warning: 'connectv' defined but not used [-Wunused-variable]
static guint connectv[12][2][4] = {
^~~~~~~~
isocube.h:39:14: warning: 'face_v' defined but not used [-Wunused-variable]
static guint face_v[6][4] = {
^~~~~~
isocube.h:31:14: warning: 'face' defined but not used [-Wunused-variable]
static guint face[6][4][2] = {
^~~~
isocube.h:27:18: warning: 'vertex' defined but not used [-Wunused-variable]
static FttVector vertex[8] = {
^~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o adaptive.lo adaptive.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from adaptive.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o source.lo source.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from source.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o tension.lo tension.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from tension.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o vof.lo vof.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from vof.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
vof.c:2682:13: warning: 'curvature_from_h' defined but not used [-Wunused-function]
static void curvature_from_h (FttCell * cell, GfsDomain * domain,
^~~~~~~~~~~~~~~~
vof.c:2646:16: warning: 'neighboring_column' defined but not used [-Wunused-function]
static gdouble neighboring_column (FttCell * cell,
^~~~~~~~~~~~~~~~~~
vof.c:1771:16: warning: 'face_value' defined but not used [-Wunused-function]
static gdouble face_value (FttCell * cell, FttDirection d, GfsVariable * v)
^~~~~~~~~~
vof.c:850:13: warning: 'youngs_normal' defined but not used [-Wunused-function]
static void youngs_normal (FttCell * cell, GfsVariable * v, FttVector * n)
^~~~~~~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o utils.lo utils.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from utils.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ocean.lo ocean.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from ocean.c:24:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
ocean.c: In function 'correct_normal_velocity':
ocean.c:45:15: warning: variable 'type' set but not used [-Wunused-but-set-variable]
FttFaceType type;
^~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o wave.lo wave.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from wave.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o levelset.lo levelset.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from levelset.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o cartesian.lo cartesian.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from cartesian.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o surface.lo surface.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from simulation.h:27,
from surface.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o unstructured.lo unstructured.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from unstructured.h:24,
from unstructured.c:24:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o map.lo map.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from fluid.h:23,
from boundary.h:23,
from domain.h:23,
from advection.h:27,
from timestep.h:27,
from variable.h:29,
from map.h:27,
from map.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
map.c: In function 'gfs_map_read':
map.c:34:12: warning: variable 'class_changed' set but not used [-Wunused-but-set-variable]
gboolean class_changed = FALSE;
^~~~~~~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o river.lo river.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from river.c:55:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o moving.lo moving.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from moving.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
In file included from moving.c:49:0:
moving2.c: In function 'second_order_face_fractions':
moving2.c:257:33: warning: variable 's1' set but not used [-Wunused-but-set-variable]
gdouble dt1, dt2, dto1, dto2, s1, s2;
^~
moving2.c: In function 'old_solid_fractions_from_children':
moving2.c:731:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for (i = 0; i < FTT_CELLS; i++)
^~~
moving2.c:735:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
gfs_cell_init_solid_fractions_from_children (cell);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o balance.lo balance.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from event.h:27,
from balance.h:27,
from balance.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o metric.lo metric.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from metric.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
metric.c:241:15: warning: 'kpu_2d_l4' defined but not used [-Wunused-variable]
static double kpu_2d_l4[17][3] = {
^~~~~~~~~
metric.c:221:15: warning: 'kpu_2d_l2' defined but not used [-Wunused-variable]
static double kpu_2d_l2[5][3] = {
^~~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o particle.lo particle.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from particle.c:23:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -Wl,-z,relro -Wl,-z,now -o libgfs3D.la -rpath /usr/lib/arm-linux-gnueabihf ftt.lo fluid.lo variable.lo output.lo solid.lo poisson.lo advection.lo boundary.lo mpi_boundary.lo timestep.lo domain.lo init.lo refine.lo event.lo simulation.lo graphic.lo adaptive.lo source.lo tension.lo vof.lo utils.lo ocean.lo wave.lo levelset.lo cartesian.lo surface.lo unstructured.lo map.lo river.lo moving.lo balance.lo metric.lo particle.lo -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gerris2D-gerris.o `test -f 'gerris.c' || echo './'`gerris.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from gerris.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o gerris2D gerris2D-gerris.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gerris.o gerris.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from gerris.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o gerris3D gerris.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
Making all in modules
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
Making all in RStarTree
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RStarTree.lo `test -f 'RStarTree.c' || echo './'`RStarTree.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from RStarTree.c:3:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
RStarTree.c: In function 'BasicCheck':
RStarTree.c:824:26: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n","sizeof(byte):",sizeof(byte));
~~^
%d
RStarTree.c:831:26: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n","sizeof(int):",sizeof(int));
~~^
%d
RStarTree.c:838:26: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n","sizeof(typinfo):",sizeof(typinfo));
~~^
%d
RStarTree.c:839:26: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n"," sizeof(int):",sizeof(int));
~~^
%d
RStarTree.c:846:26: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n"," sizeof(typpagedir):",sizeof(typpagedir));
~~^
%d
RStarTree.c:847:26: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n","sizeof(typfixblock):",sizeof(typfixblock));
~~^
%d
RStarTree.c:854:26: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n","sizeof(typparameters):",sizeof(typparameters));
~~^
%d
RStarTree.c:855:26: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf(stderr,"%s %ld\n"," sizeof(typfixblock):",sizeof(typfixblock));
~~^
%d
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInstDel.lo `test -f 'RSTInstDel.c' || echo './'`RSTInstDel.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTInstDel.c:4:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
RSTInstDel.c: In function 'SplitAndDistributData':
RSTInstDel.c:748:7: warning: 'axisindex' may be used uninitialized in this function [-Wmaybe-uninitialized]
axisindex;
^~~~~~~~~
RSTInstDel.c:971:6: warning: 'axis' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (axis != (*par).maxdim || axsortside != currsortside) {
^
RSTInstDel.c:744:32: warning: 'axsortside' may be used uninitialized in this function [-Wmaybe-uninitialized]
Side sortside, currsortside, axsortside;
^~~~~~~~~~
RSTInstDel.c:952:8: warning: 'backvalvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (backvalvalue <= validvalue) {
^
RSTInstDel.c:952:8: warning: 'validvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
RSTInstDel.c:956:14: warning: 'backvaledge' may be used uninitialized in this function [-Wmaybe-uninitialized]
validedge= validedge+backvaledge;
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
RSTInstDel.c:956:14: warning: 'validedge' may be used uninitialized in this function [-Wmaybe-uninitialized]
RSTInstDel.c: In function 'SplitAndDistributDir':
RSTInstDel.c:482:7: warning: 'axisindex' may be used uninitialized in this function [-Wmaybe-uninitialized]
axisindex;
^~~~~~~~~
RSTInstDel.c:705:6: warning: 'axis' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (axis != (*par).maxdim || axsortside != currsortside) {
^
RSTInstDel.c:478:32: warning: 'axsortside' may be used uninitialized in this function [-Wmaybe-uninitialized]
Side sortside, currsortside, axsortside;
^~~~~~~~~~
RSTInstDel.c:686:8: warning: 'backvalvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (backvalvalue <= validvalue) {
^
RSTInstDel.c:686:8: warning: 'validvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
RSTInstDel.c:690:14: warning: 'backvaledge' may be used uninitialized in this function [-Wmaybe-uninitialized]
validedge= validedge+backvaledge;
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
RSTInstDel.c:690:14: warning: 'validedge' may be used uninitialized in this function [-Wmaybe-uninitialized]
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTJoin.lo `test -f 'RSTJoin.c' || echo './'`RSTJoin.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTJoin.c:4:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTUtil.lo `test -f 'RSTUtil.c' || echo './'`RSTUtil.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTUtil.c:4:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
RSTUtil.c: In function 'Covers':
RSTUtil.c:204:7: warning: variable 'maxdim' set but not used [-Wunused-but-set-variable]
int maxdim;
^~~~~~
RSTUtil.c: In function 'ChooseSubtree':
RSTUtil.c:546:16: warning: variable 'inv' set but not used [-Wunused-but-set-variable]
int maxexam, inv;
^~~
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInOut.lo `test -f 'RSTInOut.c' || echo './'`RSTInOut.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTInOut.c:4:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInterUtil.lo `test -f 'RSTInterUtil.c' || echo './'`RSTInterUtil.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTInterUtil.c:4:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
RSTInterUtil.c: In function 'SetCheckDir':
RSTInterUtil.c:208:7: warning: variable 'PACKEDSIZE_DIRnofentries' set but not used [-Wunused-but-set-variable]
PACKEDSIZE_DIRnofentries, REALSIZE_DIRnofentries;
^~~~~~~~~~~~~~~~~~~~~~~~
RSTInterUtil.c:207:7: warning: variable 'PACKEDdirentrylen' set but not used [-Wunused-but-set-variable]
PACKEDdirentrylen, REALdirentrylen,
^~~~~~~~~~~~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTQuery.lo `test -f 'RSTQuery.c' || echo './'`RSTQuery.c
In file included from /usr/include/arm-linux-gnueabihf/sys/file.h:21:0,
from RStarTree.h:28,
from RSTQuery.c:4:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o libcSmRST.la libcSmRST_la-RStarTree.lo libcSmRST_la-RSTInstDel.lo libcSmRST_la-RSTJoin.lo libcSmRST_la-RSTUtil.lo libcSmRST_la-RSTInOut.lo libcSmRST_la-RSTInterUtil.lo libcSmRST_la-RSTQuery.lo
ar: `u' modifier ignored since `D' is the default (see `U')
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
Making all in kdt
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libkdt_la-kdt.lo `test -f 'kdt.c' || echo './'`kdt.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from kdt.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
kdt.c:450:13: warning: 'kdt_rect_write' defined but not used [-Wunused-function]
static void kdt_rect_write (const KdtRect rect, FILE * fp)
^~~~~~~~~~~~~~
kdt.c:252:13: warning: 'kdt_write' defined but not used [-Wunused-function]
static void kdt_write (KdtHeap * h, FILE * fp)
^~~~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o libkdt.la libkdt_la-kdt.lo
ar: `u' modifier ignored since `D' is the default (see `U')
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o xyz2kdt-xyz2kdt.o `test -f 'xyz2kdt.c' || echo './'`xyz2kdt.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from xyz2kdt.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o xyz2kdt xyz2kdt-xyz2kdt.o -lkdt -lm
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o kdt2kdt-kdt2kdt.o `test -f 'kdt2kdt.c' || echo './'`kdt2kdt.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from kdt2kdt.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o kdt2kdt kdt2kdt-kdt2kdt.o -lkdt -lm
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o kdtquery-kdtquery.o `test -f 'kdtquery.c' || echo './'`kdtquery.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from kdtquery.c:21:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o kdtquery kdtquery-kdtquery.o -lkdt -lm
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
Making all in fes2004
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_alloc.lo `test -f 'fes2004_alloc.c' || echo './'`fes2004_alloc.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from fes2004_lib.h:12,
from fes2004_alloc.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_error.lo `test -f 'fes2004_error.c' || echo './'`fes2004_error.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from fes2004_error.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
fes2004_error.c:4:6: warning: no previous prototype for 'print_error_1' [-Wmissing-prototypes]
void print_error_1()
^~~~~~~~~~~~~
fes2004_error.c:11:6: warning: no previous prototype for 'print_error_2' [-Wmissing-prototypes]
void print_error_2()
^~~~~~~~~~~~~
fes2004_error.c:18:6: warning: no previous prototype for 'print_error_3' [-Wmissing-prototypes]
void print_error_3(char *message)
^~~~~~~~~~~~~
fes2004_error.c:25:6: warning: no previous prototype for 'print_error_4' [-Wmissing-prototypes]
void print_error_4(char *message)
^~~~~~~~~~~~~
fes2004_error.c:32:6: warning: no previous prototype for 'print_error_5' [-Wmissing-prototypes]
void print_error_5(char *message)
^~~~~~~~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_extraction.lo `test -f 'fes2004_extraction.c' || echo './'`fes2004_extraction.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from fes2004_lib.h:12,
from fes2004_extraction.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_init.lo `test -f 'fes2004_init.c' || echo './'`fes2004_init.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from fes2004_lib.h:12,
from fes2004_init.c:2:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
fes2004_init.c: In function 'init_spectrum':
fes2004_init.c:42:7: warning: variable 'rstatus' set but not used [-Wunused-but-set-variable]
int rstatus;
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_io.lo `test -f 'fes2004_io.c' || echo './'`fes2004_io.c
In file included from /usr/include/errno.h:28:0,
from /usr/include/netcdf.h:16,
from fes2004_io.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
fes2004_io.c: In function 'load_netcdf_fes2004_data':
fes2004_io.c:16:9: warning: variable 'rstatus' set but not used [-Wunused-but-set-variable]
int i,rstatus;
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_prediction.lo `test -f 'fes2004_prediction.c' || echo './'`fes2004_prediction.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from fes2004_lib.h:12,
from fes2004_prediction.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_kernel.lo `test -f 'fes2004_kernel.c' || echo './'`fes2004_kernel.c
In file included from /usr/include/errno.h:28:0,
from /usr/include/netcdf.h:16,
from fes2004_kernel.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
fes2004_kernel.c: In function 'pred_coeur':
fes2004_kernel.c:115:10: warning: variable 'pi' set but not used [-Wunused-but-set-variable]
double pi;
^~
fes2004_kernel.c: In function 'extract_coeur':
fes2004_kernel.c:191:10: warning: variable 'pi' set but not used [-Wunused-but-set-variable]
double pi;
^~
fes2004_kernel.c: In function 'compute_admittance':
fes2004_kernel.c:457:11: warning: variable 'gsl_out' set but not used [-Wunused-but-set-variable]
int i,n,gsl_out;
^~~~~~~
fes2004_kernel.c: In function 'astronomic_angle':
fes2004_kernel.c:663:16: warning: variable 'sin2I' set but not used [-Wunused-but-set-variable]
double t2,t4,sin2I,s2;
^~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o libfes.la libfes_la-fes2004_alloc.lo libfes_la-fes2004_error.lo libfes_la-fes2004_extraction.lo libfes_la-fes2004_init.lo libfes_la-fes2004_io.lo libfes_la-fes2004_prediction.lo libfes_la-fes2004_kernel.lo
ar: `u' modifier ignored since `D' is the default (see `U')
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
Making all in wavewatch
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
Making all in culvert
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
/bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libboyd87_la-boyd87.lo `test -f 'boyd87.c' || echo './'`boyd87.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from boyd87.c:9:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o libboyd87.la libboyd87_la-boyd87.lo
ar: `u' modifier ignored since `D' is the default (see `U')
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o check_inlet-check_inlet.o `test -f 'check_inlet.c' || echo './'`check_inlet.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from check_inlet.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o check_inlet check_inlet-check_inlet.o -lboyd87 -lm
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o check_outlet-check_outlet.o `test -f 'check_outlet.c' || echo './'`check_outlet.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from check_outlet.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o check_outlet check_outlet-check_outlet.o -lboyd87 -lm
mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o discharge_table-discharge_table.o `test -f 'discharge_table.c' || echo './'`discharge_table.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from discharge_table.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o discharge_table discharge_table-discharge_table.o -lboyd87 -lm
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulatecommon2D_la-particulatecommon.lo `test -f 'particulatecommon.c' || echo './'`particulatecommon.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from particulatecommon.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libparticulatecommon2D.la libparticulatecommon2D_la-particulatecommon.lo
libtool: warning: '-version-info/-version-number' is ignored for convenience libraries
libtool: warning: '-release' is ignored for convenience libraries
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulatecommon3D_la-particulatecommon.lo `test -f 'particulatecommon.c' || echo './'`particulatecommon.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from particulatecommon.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libparticulatecommon3D.la libparticulatecommon3D_la-particulatecommon.lo
libtool: warning: '-version-info/-version-number' is ignored for convenience libraries
libtool: warning: '-release' is ignored for convenience libraries
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libterrain2D_la-terrain.lo `test -f 'terrain.c' || echo './'`terrain.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from terrain.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libterrain2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libterrain2D_la-terrain.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lkdt -lkdt -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o terrain.lo terrain.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from terrain.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libterrain3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris terrain.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lkdt -lkdt -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulates2D_la-particulates.lo `test -f 'particulates.c' || echo './'`particulates.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from ../src/particle.h:27,
from particulatecommon.h:20,
from particulates.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libparticulates2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libparticulates2D_la-particulates.lo libparticulatecommon2D.la ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulates3D_la-particulates.lo `test -f 'particulates.c' || echo './'`particulates.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from ../src/particle.h:27,
from particulatecommon.h:20,
from particulates.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libparticulates3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libparticulates3D_la-particulates.lo libparticulatecommon3D.la ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libokada2D_la-okada.lo `test -f 'okada.c' || echo './'`okada.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from okada.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libokada2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libokada2D_la-okada.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libokada3D_la-okada.lo `test -f 'okada.c' || echo './'`okada.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from okada.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libokada3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libokada3D_la-okada.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libdf33D_la-df3.lo `test -f 'df3.c' || echo './'`df3.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from df3.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libdf33D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libdf33D_la-df3.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libelectrohydro2D_la-electrohydro.lo `test -f 'electrohydro.c' || echo './'`electrohydro.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/fluid.h:23,
from ../src/boundary.h:23,
from ../src/domain.h:23,
from ../src/simulation.h:27,
from electrohydro.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libelectrohydro2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libelectrohydro2D_la-electrohydro.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libelectrohydro3D_la-electrohydro.lo `test -f 'electrohydro.c' || echo './'`electrohydro.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/fluid.h:23,
from ../src/boundary.h:23,
from ../src/domain.h:23,
from ../src/simulation.h:27,
from electrohydro.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libelectrohydro3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libelectrohydro3D_la-electrohydro.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libskewsymmetric2D_la-skewsymmetric.lo `test -f 'skewsymmetric.c' || echo './'`skewsymmetric.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/fluid.h:23,
from ../src/boundary.h:23,
from ../src/domain.h:23,
from ../src/simulation.h:27,
from skewsymmetric.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
skewsymmetric.c: In function 'gfs_skew_symmetric_run':
skewsymmetric.c:591:23: warning: variable 'res' set but not used [-Wunused-but-set-variable]
GfsVariable * p, * res = NULL, * gmac[FTT_DIMENSION];
^~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libskewsymmetric2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libskewsymmetric2D_la-skewsymmetric.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libskewsymmetric3D_la-skewsymmetric.lo `test -f 'skewsymmetric.c' || echo './'`skewsymmetric.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/fluid.h:23,
from ../src/boundary.h:23,
from ../src/domain.h:23,
from ../src/simulation.h:27,
from skewsymmetric.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
skewsymmetric.c: In function 'gfs_skew_symmetric_run':
skewsymmetric.c:591:23: warning: variable 'res' set but not used [-Wunused-but-set-variable]
GfsVariable * p, * res = NULL, * gmac[FTT_DIMENSION];
^~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libskewsymmetric3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libskewsymmetric3D_la-skewsymmetric.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtopics2D_la-topics.lo `test -f 'topics.c' || echo './'`topics.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/solid.h:23,
from topics.c:21:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
In file included from ../src/timestep.h:29:0,
from ../src/simulation.h:28,
from ../src/event.h:53,
from ../src/solid.h:26,
from topics.c:21:
topics.c: In function 'print_interface':
topics.c:1139:38: warning: array subscript is above array bounds [-Warray-bounds]
double nz = GFS_VALUE(cell, tv->m[2]);
../src/variable.h:76:74: note: in definition of macro 'GFS_VALUE'
#define GFS_VALUE(cell,v) ((&GFS_STATE (cell)->place_holder)[(v)->i])
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libtopics2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libtopics2D_la-topics.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtopics3D_la-topics.lo `test -f 'topics.c' || echo './'`topics.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/solid.h:23,
from topics.c:21:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libtopics3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libtopics3D_la-topics.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libculvert2D_la-culvert.lo `test -f 'culvert.c' || echo './'`culvert.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from ../src/source.h:27,
from ../src/river.h:27,
from culvert.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libculvert2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libculvert2D_la-culvert.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lculvert -lboyd87 -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o liblayered2D_la-layered.lo `test -f 'layered.c' || echo './'`layered.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/fluid.h:23,
from ../src/boundary.h:23,
from ../src/domain.h:23,
from ../src/simulation.h:27,
from layered.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o liblayered2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris liblayered2D_la-layered.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtide2D_la-tide.lo `test -f 'tide.c' || echo './'`tide.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/string.h:26,
from tide.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libtide2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libtide2D_la-tide.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lfes2004 -lfes -lnetcdf -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtide3D_la-tide.lo `test -f 'tide.c' || echo './'`tide.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/string.h:26,
from tide.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libtide3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libtide3D_la-tide.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lfes2004 -lfes -lnetcdf -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libstokes2D_la-stokes.lo `test -f 'stokes.c' || echo './'`stokes.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from stokes.c:19:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -c -o CW263.lo CW263.f
/bin/bash ../libtool --silent --tag=F77 --mode=link f77 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libstokes2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libstokes2D_la-stokes.lo CW263.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libstokes3D_la-stokes.lo `test -f 'stokes.c' || echo './'`stokes.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from stokes.c:19:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=F77 --mode=link f77 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libstokes3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libstokes3D_la-stokes.lo CW263.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libbubbles2D_la-bubbles.lo `test -f 'bubbles.c' || echo './'`bubbles.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from ../src/particle.h:27,
from particulatecommon.h:20,
from bubbles.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
bubbles.c: In function 'bubble_fraction_init':
bubbles.c:421:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
GFS_PARTICULATE_FIELD (v)->voidfraction_func = voidfraction_from_bubbles;
^
bubbles.c: In function 'bubble_fraction_dt_init':
bubbles.c:474:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
GFS_PARTICULATE_FIELD (o)->voidfraction_func = dVpdt_from_particles;
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libbubbles2D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libbubbles2D_la-bubbles.lo libparticulatecommon2D.la ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm
ar: `u' modifier ignored since `D' is the default (see `U')
/bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libbubbles3D_la-bubbles.lo `test -f 'bubbles.c' || echo './'`bubbles.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from /usr/include/gts.h:23,
from ../src/event.h:27,
from ../src/particle.h:27,
from particulatecommon.h:20,
from bubbles.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
bubbles.c: In function 'bubble_fraction_init':
bubbles.c:421:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
GFS_PARTICULATE_FIELD (v)->voidfraction_func = voidfraction_from_bubbles;
^
bubbles.c: In function 'bubble_fraction_dt_init':
bubbles.c:474:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
GFS_PARTICULATE_FIELD (o)->voidfraction_func = dVpdt_from_particles;
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o libbubbles3D.la -rpath /usr/lib/arm-linux-gnueabihf/gerris libbubbles3D_la-bubbles.lo libparticulatecommon3D.la ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm
ar: `u' modifier ignored since `D' is the default (see `U')
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o rsurface2kdt-rsurface2kdt.o `test -f 'rsurface2kdt.c' || echo './'`rsurface2kdt.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from rsurface2kdt.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/arm-linux-gnueabihf/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o rsurface2kdt-rsurface.o `test -f 'rsurface.c' || echo './'`rsurface.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdio.h:28,
from rsurface.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
In file included from rsurface.c:5:0:
rsurface.h:16:1: warning: no semicolon at end of struct or union
} RSurfaceSum;
^
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-z,relro -Wl,-z,now -o rsurface2kdt rsurface2kdt-rsurface2kdt.o rsurface2kdt-rsurface.o -LRStarTree -lcSmRST -Lkdt -lkdt -lm
libtool: warning: '-version-info' is ignored for programs
libtool: warning: '-release' is ignored for programs
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
Making all in tools
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfs2oogl2D-gfs2oogl.o `test -f 'gfs2oogl.c' || echo './'`gfs2oogl.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from gfs2oogl.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
gfs2oogl.c: In function 'main':
gfs2oogl.c:891:7: warning: 'g_basename' is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations]
streamname = g_strdup (g_basename (optarg));
^~~~~~~~~~
In file included from /usr/include/glib-2.0/glib.h:48:0,
from /usr/include/gts.h:24,
from ../src/init.h:23,
from gfs2oogl.c:31:
/usr/include/glib-2.0/glib/gfileutils.h:167:14: note: declared here
const gchar *g_basename (const gchar *file_name);
^~~~~~~~~~
gfs2oogl.c:706:28: warning: variable 'lines' set but not used [-Wunused-but-set-variable]
gboolean ribbon = FALSE, lines = FALSE, squares = FALSE;
^~~~~
gfs2oogl.c:706:12: warning: variable 'ribbon' set but not used [-Wunused-but-set-variable]
gboolean ribbon = FALSE, lines = FALSE, squares = FALSE;
^~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o gfs2oogl2D gfs2oogl2D-gfs2oogl.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfs2oogl.o gfs2oogl.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from gfs2oogl.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
gfs2oogl.c: In function 'main':
gfs2oogl.c:891:7: warning: 'g_basename' is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations]
streamname = g_strdup (g_basename (optarg));
^~~~~~~~~~
In file included from /usr/include/glib-2.0/glib.h:48:0,
from /usr/include/gts.h:24,
from ../src/init.h:23,
from gfs2oogl.c:31:
/usr/include/glib-2.0/glib/gfileutils.h:167:14: note: declared here
const gchar *g_basename (const gchar *file_name);
^~~~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o gfs2oogl3D gfs2oogl.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o streamanime.o streamanime.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from streamanime.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o streamanime streamanime.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ppmcombine-ppmcombine.o `test -f 'ppmcombine.c' || echo './'`ppmcombine.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from ppmcombine.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
ppmcombine.c: In function 'main':
ppmcombine.c:36:12: warning: variable 'verbose' set but not used [-Wunused-but-set-variable]
gboolean verbose = FALSE;
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o ppmcombine ppmcombine-ppmcombine.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscompare2D-gfscompare.o `test -f 'gfscompare.c' || echo './'`gfscompare.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from gfscompare.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
gfscompare.c: In function 'main':
gfscompare.c:319:12: warning: variable 'no_check' set but not used [-Wunused-but-set-variable]
gboolean no_check = FALSE;
^~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o gfscompare2D gfscompare2D-gfscompare.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscompare.o gfscompare.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from gfscompare.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
gfscompare.c: In function 'main':
gfscompare.c:319:12: warning: variable 'no_check' set but not used [-Wunused-but-set-variable]
gboolean no_check = FALSE;
^~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o gfscompare3D gfscompare.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscombine2D-gfscombine.o `test -f 'gfscombine.c' || echo './'`gfscombine.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from gfscombine.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o gfscombine2D gfscombine2D-gfscombine.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscombine.o gfscombine.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/math.h:27,
from gfscombine.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o gfscombine3D gfscombine.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfsjoin2D-gfsjoin2.o `test -f 'gfsjoin2.c' || echo './'`gfsjoin2.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from gfsjoin2.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o gfsjoin2D gfsjoin2D-gfsjoin2.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfsjoin2.o gfsjoin2.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from gfsjoin2.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o gfsjoin3D gfsjoin2.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o shapes.o shapes.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/stdlib.h:25,
from shapes.c:20:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
shapes.c:288:13: warning: 'surface_add_rectangular_channel_shape' defined but not used [-Wunused-function]
static void surface_add_rectangular_channel_shape (GtsSurface * s,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o shapes shapes.o -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
Making all in test
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
Making all in doc
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
ls ../src/*.[ch] | awk 'BEGIN{print "reference: \\"}{ print "\t" $1 " \\"}' > Makefile.deps
Making all in tutorial
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
awk -f depend.awk file="tutorial" < tutorial.tex > Makefile.deps
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
Making all in examples
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o classes-classes.o `test -f 'classes.c' || echo './'`classes.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/string.h:26,
from classes.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o classes-init.o `test -f '../../src/init.c' || echo './'`../../src/init.c
../../src/init.c:33:0: warning: "_GNU_SOURCE" redefined
# define _GNU_SOURCE
<command-line>:0:0: note: this is the location of the previous definition
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/fenv.h:26,
from ../../src/init.c:34:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o classes classes-classes.o classes-init.o ../../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o modules-modules.o `test -f 'modules.c' || echo './'`modules.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/limits.h:26,
from /usr/lib/gcc/arm-linux-gnueabihf/7/include-fixed/limits.h:194,
from /usr/lib/gcc/arm-linux-gnueabihf/7/include-fixed/syslimits.h:7,
from /usr/lib/gcc/arm-linux-gnueabihf/7/include-fixed/limits.h:34,
from /usr/lib/arm-linux-gnueabihf/glib-2.0/include/glibconfig.h:11,
from /usr/include/glib-2.0/glib/gtypes.h:32,
from /usr/include/glib-2.0/glib/galloca.h:32,
from /usr/include/glib-2.0/glib.h:30,
from /usr/include/glib-2.0/gmodule.h:28,
from modules.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o modules modules-modules.o ../../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
./modules ../../modules/*.la /usr/lib/arm-linux-gnueabihf/gerris/*.so | LC_ALL=C sort | uniq > modules.list
(./classes && sh ./modulesyms.sh ../../modules /usr/lib/arm-linux-gnueabihf/gerris) | LC_ALL=C sort > gerris.dic
echo "# Language file for source-highlight" > gfs.lang
echo "# Generated automatically by classes.c" >> gfs.lang
awk '{ printf ("classname = \"%s\"\n", $1) }' < gerris.dic >> gfs.lang
echo "include \"/usr/share/source-highlight/cpp.lang\"" >> gfs.lang
echo "comment start \"#\"" >> gfs.lang
echo "redef preproc = \"C preprocessor command is not compatible with the use of # as comment character in GTS\"" >> gfs.lang
echo "(defvar gfs-abbrevs '(" > gfs-keywords.el
awk '{ printf ("\"%s\"\n", $1) }' < gerris.dic >> gfs-keywords.el
echo ")" >> gfs-keywords.el
echo "\"Gerris keywords automatically generated by classes.c.\")" >> gfs-keywords.el
echo "(defvar gfs-modules '(" >> gfs-keywords.el
awk '{ printf ("\"%s\"\n", $1) }' < modules.list >> gfs-keywords.el
echo ")" >> gfs-keywords.el
echo "\"Gerris modules automatically generated by modules.c.\")" >> gfs-keywords.el
echo "(provide 'gfs-keywords)" >> gfs-keywords.el
sh ./gfs.php.sh > gfs.php
make all-am
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make[5]: Nothing to be done for 'all-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
Making all in manpages
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o autoclass-autoclass.o `test -f 'autoclass.c' || echo './'`autoclass.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/string.h:26,
from autoclass.c:1:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
autoclass.c: In function 'main':
autoclass.c:6:21: warning: variable 'klass' set but not used [-Wunused-but-set-variable]
GtsObjectClass ** klass;
^~~~~
mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o autoclass-init.o `test -f '../src/init.c' || echo './'`../src/init.c
../src/init.c:33:0: warning: "_GNU_SOURCE" redefined
# define _GNU_SOURCE
<command-line>:0:0: note: this is the location of the previous definition
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33:0,
from /usr/include/fenv.h:26,
from ../src/init.c:34:
/usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^~~~~~~
/bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-z,relro -Wl,-z,now -o autoclass autoclass-autoclass.o autoclass-init.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
Making all in desktop
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
Making all in debian
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_auto_install
make -j1 install DESTDIR=/<<BUILDDIR>>/gerris-20131206\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
Making install in src
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make install-am
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../libtool --silent --mode=install /usr/bin/install -c libgfs2D.la libgfs3D.la '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/bash ../libtool --silent --mode=install /usr/bin/install -c gerris2D gerris3D '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/include'
/usr/bin/install -c -m 644 gfs.h '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/include'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 gerris2D.pc gerris3D.pc '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
/usr/bin/install -c -m 644 m4.awk '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/include/gerris'
/usr/bin/install -c -m 644 ftt.h fluid.h variable.h output.h solid.h poisson.h advection.h boundary.h mpi_boundary.h timestep.h domain.h init.h refine.h event.h simulation.h graphic.h adaptive.h source.h tension.h vof.h utils.h ocean.h wave.h levelset.h isocube.h cartesian.h surface.h unstructured.h map.h river.h moving.h balance.h metric.h particle.h version.h spatial.h function.h '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/include/gerris'
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/src'
Making install in modules
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
Making install in RStarTree
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/RStarTree'
Making install in kdt
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/bash ../../libtool --silent --mode=install /usr/bin/install -c xyz2kdt kdt2kdt kdtquery '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/kdt'
Making install in fes2004
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/fes2004'
Making install in wavewatch
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/wavewatch'
Making install in culvert
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules/culvert'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/bash ../libtool --silent --mode=install /usr/bin/install -c rsurface2kdt '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/gerris'
/bin/bash ../libtool --silent --mode=install /usr/bin/install -c libterrain2D.la libterrain3D.la libparticulates2D.la libparticulates3D.la libokada2D.la libokada3D.la libdf33D.la libelectrohydro2D.la libelectrohydro3D.la libskewsymmetric2D.la libskewsymmetric3D.la libtopics2D.la libtopics3D.la libculvert2D.la liblayered2D.la libtide2D.la libtide3D.la libstokes2D.la libstokes3D.la libbubbles2D.la libbubbles3D.la '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/gerris'
libtool: warning: relinking 'libterrain2D.la'
libtool: warning: relinking 'libterrain3D.la'
libtool: warning: relinking 'libparticulates2D.la'
libtool: warning: relinking 'libparticulates3D.la'
libtool: warning: relinking 'libokada2D.la'
libtool: warning: relinking 'libokada3D.la'
libtool: warning: relinking 'libdf33D.la'
libtool: warning: relinking 'libelectrohydro2D.la'
libtool: warning: relinking 'libelectrohydro3D.la'
libtool: warning: relinking 'libskewsymmetric2D.la'
libtool: warning: relinking 'libskewsymmetric3D.la'
libtool: warning: relinking 'libtopics2D.la'
libtool: warning: relinking 'libtopics3D.la'
libtool: warning: relinking 'libculvert2D.la'
libtool: warning: relinking 'liblayered2D.la'
libtool: warning: relinking 'libtide2D.la'
libtool: warning: relinking 'libtide3D.la'
libtool: warning: relinking 'libstokes2D.la'
libtool: warning: relinking 'libstokes3D.la'
libtool: warning: relinking 'libbubbles2D.la'
libtool: warning: relinking 'libbubbles3D.la'
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf/gerris'
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/modules'
Making install in tools
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/bash ../libtool --silent --mode=install /usr/bin/install -c gfs2oogl2D gfs2oogl3D streamanime ppmcombine gfscompare2D gfscompare3D gfscombine2D gfscombine3D gfsjoin2D gfsjoin3D shapes '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/usr/bin/install -c darcs2dist bat2gts ppm2mpeg ppm2theora ppm2video gfs2gfs gfsjoin gfsplot '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/tools'
Making install in test
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/test'
Making install in doc
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
Making install in tutorial
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/tutorial'
Making install in examples
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make install-am
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make[6]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/usr/bin/install -c gfs2doc gfs-highlight gfsxref '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
/usr/bin/install -c -m 644 gfs2tex.py gfs.lang gerris.dic gfs-keywords.el gfs-mode.el gfs.sty gfs.hva kaltura.sh gfs.php '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
make[6]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/examples'
Making install in manpages
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[5]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 bat2gts.1 gerris2D.1 gerris3D.1 gfs2gfs.1 gfs2oogl2D.1 gfs2oogl3D.1 gfscompare2D.1 gfscompare3D.1 gfs-config.1 gfs-highlight.1 gfsjoin.1 gfsxref.1 ppm2mpeg.1 ppmcombine.1 rsurfacequery.1 rsurfaceinfo.1 shapes.1 streamanime.1 xyz2rsurface.1 gfsjoin2D.1 gfsjoin3D.1 '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/man/man1'
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc/manpages'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
make[5]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
make[5]: Nothing to be done for 'install-exec-am'.
make[5]: Nothing to be done for 'install-data-am'.
make[5]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/doc'
Making install in desktop
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/icons/hicolor/48x48/mimetypes'
/usr/bin/install -c -m 644 application-gerris.png application-gerris-2D.png application-gerris-3D.png application-gerris-compressed.png '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/icons/hicolor/48x48/mimetypes'
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/mime/packages'
/usr/bin/install -c -m 644 gerris.xml '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/mime/packages'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/desktop'
Making install in debian
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg/debian'
make[3]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[4]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
/usr/bin/install -c build_function libtool '/<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris'
make[4]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
find /<<BUILDDIR>>/gerris-20131206+dfsg/debian/ -name "*.la" | xargs rm -f
sed -i -e "s/mpicc/gcc/g" /<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris/build_function
rm -rf /<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin/darcs2dist
rm -rf /<<BUILDDIR>>/gerris-20131206+dfsg/debian/tmp/usr/bin/gfs2doc
make[1]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_install -a
dh_installdocs -a
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_installchangelogs ChangeLog
make[1]: Leaving directory '/<<BUILDDIR>>/gerris-20131206+dfsg'
dh_installman -a
dh_lintian -a
dh_icons -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes2D-1.3.so.2.0.0 debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes3D-1.3.so.2.0.0 were not linked against libgcc_s.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/gerris/usr/bin/gfs2oogl3D debian/gerris/usr/bin/gfscompare3D debian/gerris/usr/bin/streamanime debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes2D-1.3.so.2.0.0 debian/gerris/usr/bin/gerris3D debian/gerris/usr/bin/gfscombine2D debian/gerris/usr/bin/gerris2D debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes3D-1.3.so.2.0.0 debian/gerris/usr/bin/shapes debian/gerris/usr/bin/gfscompare2D debian/gerris/usr/bin/ppmcombine debian/gerris/usr/bin/gfsjoin3D debian/gerris/usr/bin/gfs2oogl2D debian/gerris/usr/bin/gfscombine3D debian/gerris/usr/bin/gfsjoin2D were not linked against libgmodule-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/gerris/usr/bin/gfs2oogl3D debian/gerris/usr/bin/gfscompare3D debian/gerris/usr/bin/streamanime debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes2D-1.3.so.2.0.0 debian/gerris/usr/bin/gerris3D debian/gerris/usr/bin/gfscombine2D debian/gerris/usr/bin/gerris2D debian/gerris/usr/lib/arm-linux-gnueabihf/gerris/libstokes3D-1.3.so.2.0.0 debian/gerris/usr/bin/shapes debian/gerris/usr/bin/gfscompare2D debian/gerris/usr/bin/ppmcombine debian/gerris/usr/bin/gfsjoin3D debian/gerris/usr/bin/gfs2oogl2D debian/gerris/usr/bin/gfscombine3D debian/gerris/usr/bin/gfsjoin2D were not linked against libgthread-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libgfs-1.3-2/usr/lib/arm-linux-gnueabihf/libgfs2D-1.3.so.2.0.0 debian/libgfs-1.3-2/usr/lib/arm-linux-gnueabihf/libgfs3D-1.3.so.2.0.0 were not linked against libgthread-2.0.so.0 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package libgfs-dev: unknown substitution variable ${shlibs:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'gerris' in '../gerris_20131206+dfsg-18+b1_armhf.deb'.
dpkg-deb: building package 'gerris-dbgsym' in '../gerris-dbgsym_20131206+dfsg-18+b1_armhf.deb'.
dpkg-deb: building package 'libgfs-1.3-2' in '../libgfs-1.3-2_20131206+dfsg-18+b1_armhf.deb'.
dpkg-deb: building package 'libgfs-1.3-2-dbgsym' in '../libgfs-1.3-2-dbgsym_20131206+dfsg-18+b1_armhf.deb'.
dpkg-deb: building package 'libgfs-dev' in '../libgfs-dev_20131206+dfsg-18+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../gerris_20131206+dfsg-18+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build gerris-20131206+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-12-13T19:53:37Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
gerris_20131206+dfsg-18+b1_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Thu, 23 Nov 2017 21:50:59 +0100
Source: gerris (20131206+dfsg-18)
Binary: gerris libgfs-1.3-2 libgfs-dev
Binary-Only: yes
Architecture: armhf
Version: 20131206+dfsg-18+b1
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
gerris - Fluid Flow Solver
libgfs-1.3-2 - Fluid Flow Solver -- shared libraries
libgfs-dev - Fluid Flow Solver -- development libraries and headers
Changes:
gerris (20131206+dfsg-18+b1) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
gerris-dbgsym_20131206+dfsg-18+b1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 419972 bytes: control archive=1424 bytes.
1154 bytes, 12 lines control
2014 bytes, 19 lines md5sums
Package: gerris-dbgsym
Source: gerris (20131206+dfsg-18)
Version: 20131206+dfsg-18+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 584
Depends: gerris (= 20131206+dfsg-18+b1)
Section: debug
Priority: optional
Description: debug symbols for gerris
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drwxr-xr-x root/root 0 2017-11-23 20:50 ./
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-rw-r--r-- root/root 34564 2017-11-23 20:50 ./usr/lib/debug/.build-id/38/7b145bb8b43e545cfc11e26ca3e03a24d6d20c.debug
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drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/share/doc/gerris-dbgsym -> gerris
gerris_20131206+dfsg-18+b1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 280480 bytes: control archive=3028 bytes.
1317 bytes, 32 lines control
4615 bytes, 72 lines md5sums
50 bytes, 2 lines shlibs
68 bytes, 2 lines triggers
Package: gerris
Source: gerris (20131206+dfsg-18)
Version: 20131206+dfsg-18+b1
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 1001
Depends: gcc, libc6 (>= 2.4), libgcc1 (>= 1:3.0), libgfortran4 (>= 7), libgfs-1.3-2, libglib2.0-0 (>= 2.12.0), libgts-0.7-5 (>= 0.7.6), libopenmpi2
Recommends: gfsview
Suggests: python
Breaks: gerris-mpi (<< 20131206+dfsg-7)
Replaces: gerris-mpi (<< 20131206+dfsg-7)
Section: science
Priority: optional
Homepage: http://gfs.sourceforge.net/
Description: Fluid Flow Solver
Gerris is a system for the solution of the partial differential
equations describing fluid flow.
.
A brief summary of its main (current) features:
.
* Solves the time-dependent incompressible variable-density Euler,
Stokes or Navier-Stokes equations
* Adaptive mesh refinement: the resolution is adapted dynamically to
the features of the flow
* Entirely automatic mesh generation in complex geometries
* Second-order in space and time
* Unlimited number of advected/diffused passive tracers
* Flexible specification of additional source terms
* Portable parallel support using the MPI library
* Volume of Fluid advection scheme for interfacial flows
.
This package has MPI support built in.
drwxr-xr-x root/root 0 2017-11-23 20:50 ./
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/bin/
-rwxr-xr-x root/root 3218 2017-11-23 20:50 ./usr/bin/bat2gts
-rwxr-xr-x root/root 18116 2017-11-23 20:50 ./usr/bin/gerris2D
-rwxr-xr-x root/root 18116 2017-11-23 20:50 ./usr/bin/gerris3D
-rwxr-xr-x root/root 1967 2017-11-23 20:50 ./usr/bin/gfs-highlight
-rwxr-xr-x root/root 551 2017-11-23 20:50 ./usr/bin/gfs2gfs
-rwxr-xr-x root/root 26516 2017-11-23 20:50 ./usr/bin/gfs2oogl2D
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-rwxr-xr-x root/root 18180 2017-11-23 20:50 ./usr/bin/gfscompare3D
-rwxr-xr-x root/root 5034 2017-11-23 20:50 ./usr/bin/gfsjoin
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-rwxr-xr-x root/root 9748 2017-11-23 20:50 ./usr/bin/gfsjoin3D
-rwxr-xr-x root/root 1264 2017-11-23 20:50 ./usr/bin/gfsplot
-rwxr-xr-x root/root 1732 2017-11-23 20:50 ./usr/bin/gfsxref
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-rwxr-xr-x root/root 9732 2017-11-23 20:50 ./usr/bin/streamanime
-rwxr-xr-x root/root 22036 2017-11-23 20:50 ./usr/bin/xyz2kdt
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/gerris/
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes2D-1.3.so.2 -> libstokes2D-1.3.so.2.0.0
-rw-r--r-- root/root 30020 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes2D-1.3.so.2.0.0
-rw-r--r-- root/root 26532 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes2D.a
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes2D.so -> libstokes2D-1.3.so.2.0.0
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes3D-1.3.so.2 -> libstokes3D-1.3.so.2.0.0
-rw-r--r-- root/root 30020 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes3D-1.3.so.2.0.0
-rw-r--r-- root/root 26532 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes3D.a
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/gerris/libstokes3D.so -> libstokes3D-1.3.so.2.0.0
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/gerris/
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/gerris/gfs2tex.py -> ../../share/gerris/gfs2tex.py
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/gerris/m4.awk -> ../../share/gerris/m4.awk
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/doc/gerris/
-rw-r--r-- root/root 930 2013-12-06 15:51 ./usr/share/doc/gerris/AUTHORS
-rw-r--r-- root/root 4362 2013-12-06 15:51 ./usr/share/doc/gerris/NEWS.gz
-rw-r--r-- root/root 665 2013-12-06 15:51 ./usr/share/doc/gerris/README
-rw-r--r-- root/root 277 2013-12-06 15:51 ./usr/share/doc/gerris/THANKS
-rw-r--r-- root/root 1405 2013-12-06 15:51 ./usr/share/doc/gerris/TODO
-rw-r--r-- root/root 228 2017-11-23 20:50 ./usr/share/doc/gerris/changelog.Debian.armhf.gz
-rw-r--r-- root/root 4622 2017-11-23 20:50 ./usr/share/doc/gerris/changelog.Debian.gz
-rw-r--r-- root/root 66168 2013-12-06 15:56 ./usr/share/doc/gerris/changelog.gz
-rw-r--r-- root/root 1933 2016-09-26 18:35 ./usr/share/doc/gerris/copyright
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-rw-r--r-- root/root 10891 2017-11-23 20:50 ./usr/share/gerris/gfs.lang
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-rw-r--r-- root/root 210 2017-11-23 20:50 ./usr/share/gerris/gfs.sty
-rw-r--r-- root/root 7148 2017-11-23 20:50 ./usr/share/gerris/gfs2tex.py
-rw-r--r-- root/root 387 2017-11-23 20:50 ./usr/share/gerris/kaltura.sh
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lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/share/man/man1/gerris3D.1.gz -> gerris2D.1.gz
-rw-r--r-- root/root 447 2017-11-23 20:50 ./usr/share/man/man1/gfs-config.1.gz
-rw-r--r-- root/root 499 2017-11-23 20:50 ./usr/share/man/man1/gfs-highlight.1.gz
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lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/share/man/man1/gfs2oogl3D.1.gz -> gfs2oogl2D.1.gz
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lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/share/man/man1/streamanime.1.gz -> gerris2D.1.gz
-rw-r--r-- root/root 554 2017-11-23 20:50 ./usr/share/man/man1/xyz2rsurface.1.gz
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/mime/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/mime/packages/
-rw-r--r-- root/root 1048 2017-11-23 20:50 ./usr/share/mime/packages/gerris.xml
libgfs-1.3-2-dbgsym_20131206+dfsg-18+b1_armhf.deb
-------------------------------------------------
new Debian package, version 2.0.
size 1957416 bytes: control archive=612 bytes.
476 bytes, 12 lines control
212 bytes, 2 lines md5sums
Package: libgfs-1.3-2-dbgsym
Source: gerris (20131206+dfsg-18)
Version: 20131206+dfsg-18+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 2211
Depends: libgfs-1.3-2 (= 20131206+dfsg-18+b1)
Section: debug
Priority: optional
Description: debug symbols for libgfs-1.3-2
Build-Ids: 65da13148b4f0b9383806310ef4a512aefdaf2e9 b6e044f12b481146d84ebaffa6868fdb5913e835
drwxr-xr-x root/root 0 2017-11-23 20:50 ./
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/debug/.build-id/65/
-rw-r--r-- root/root 1115680 2017-11-23 20:50 ./usr/lib/debug/.build-id/65/da13148b4f0b9383806310ef4a512aefdaf2e9.debug
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/debug/.build-id/b6/
-rw-r--r-- root/root 1136604 2017-11-23 20:50 ./usr/lib/debug/.build-id/b6/e044f12b481146d84ebaffa6868fdb5913e835.debug
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/share/doc/libgfs-1.3-2-dbgsym -> libgfs-1.3-2
libgfs-1.3-2_20131206+dfsg-18+b1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 469992 bytes: control archive=1028 bytes.
736 bytes, 19 lines control
556 bytes, 7 lines md5sums
56 bytes, 2 lines shlibs
68 bytes, 2 lines triggers
Package: libgfs-1.3-2
Source: gerris (20131206+dfsg-18)
Version: 20131206+dfsg-18+b1
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 1584
Depends: libc6 (>= 2.4), libglib2.0-0 (>= 2.30.0), libgts-0.7-5 (>= 0.7.6+darcs121130), libopenmpi2
Breaks: libgfs-mpi-1.3-2 (<< 20131206+dfsg-7)
Replaces: libgfs-mpi-1.3-2 (<< 20131206+dfsg-7)
Section: devel
Priority: optional
Homepage: http://gfs.sourceforge.net/
Description: Fluid Flow Solver -- shared libraries
Gerris is a system for the solution of the partial differential
equations describing fluid flow.
.
This package contains the shared libraries for libgfs.
.
This package has MPI support built in.
drwxr-xr-x root/root 0 2017-11-23 20:50 ./
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/libgfs2D-1.3.so.2 -> libgfs2D-1.3.so.2.0.0
-rw-r--r-- root/root 745696 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/libgfs2D-1.3.so.2.0.0
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/libgfs3D-1.3.so.2 -> libgfs3D-1.3.so.2.0.0
-rw-r--r-- root/root 784484 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/libgfs3D-1.3.so.2.0.0
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/doc/libgfs-1.3-2/
-rw-r--r-- root/root 228 2017-11-23 20:50 ./usr/share/doc/libgfs-1.3-2/changelog.Debian.armhf.gz
-rw-r--r-- root/root 4622 2017-11-23 20:50 ./usr/share/doc/libgfs-1.3-2/changelog.Debian.gz
-rw-r--r-- root/root 66168 2013-12-06 15:56 ./usr/share/doc/libgfs-1.3-2/changelog.gz
-rw-r--r-- root/root 1933 2016-09-26 18:35 ./usr/share/doc/libgfs-1.3-2/copyright
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/lintian/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 48 2011-04-06 06:12 ./usr/share/lintian/overrides/libgfs-1.3-2
libgfs-dev_20131206+dfsg-18+b1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 103848 bytes: control archive=1880 bytes.
764 bytes, 20 lines control
2844 bytes, 44 lines md5sums
Package: libgfs-dev
Source: gerris (20131206+dfsg-18)
Version: 20131206+dfsg-18+b1
Architecture: armhf
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 319
Depends: libgfs-1.3-2 (= 20131206+dfsg-18+b1), libgts-dev, ffmpeg
Breaks: libgfs-mpi-dev (<< 20131206+dfsg-7)
Replaces: libgfs-mpi-dev (<< 20131206+dfsg-7)
Section: libdevel
Priority: optional
Homepage: http://gfs.sourceforge.net/
Description: Fluid Flow Solver -- development libraries and headers
Gerris is a system for the solution of the partial differential
equations describing fluid flow.
.
This package contains the headers and development libraries needed to
build applications using libgfs.
.
This package has MPI support built in.
drwxr-xr-x root/root 0 2017-11-23 20:50 ./
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/include/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/include/gerris/
-rw-r--r-- root/root 4867 2017-11-23 20:50 ./usr/include/gerris/adaptive.h
-rw-r--r-- root/root 3762 2017-11-23 20:50 ./usr/include/gerris/advection.h
-rw-r--r-- root/root 1490 2017-11-23 20:50 ./usr/include/gerris/balance.h
-rw-r--r-- root/root 10432 2017-11-23 20:50 ./usr/include/gerris/boundary.h
-rw-r--r-- root/root 2105 2017-11-23 20:50 ./usr/include/gerris/cartesian.h
-rw-r--r-- root/root 18544 2017-11-23 20:50 ./usr/include/gerris/domain.h
-rw-r--r-- root/root 10394 2017-11-23 20:50 ./usr/include/gerris/event.h
-rw-r--r-- root/root 11820 2017-11-23 20:50 ./usr/include/gerris/fluid.h
-rw-r--r-- root/root 23268 2017-11-23 20:50 ./usr/include/gerris/ftt.h
-rw-r--r-- root/root 7232 2017-11-23 20:50 ./usr/include/gerris/function.h
-rw-r--r-- root/root 4699 2017-11-23 20:50 ./usr/include/gerris/graphic.h
-rw-r--r-- root/root 1649 2017-11-23 20:50 ./usr/include/gerris/init.h
-rw-r--r-- root/root 4138 2017-11-23 20:50 ./usr/include/gerris/isocube.h
-rw-r--r-- root/root 1638 2017-11-23 20:50 ./usr/include/gerris/levelset.h
-rw-r--r-- root/root 3198 2017-11-23 20:50 ./usr/include/gerris/map.h
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-rw-r--r-- root/root 2675 2017-11-23 20:50 ./usr/include/gerris/moving.h
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-rw-r--r-- root/root 3990 2017-11-23 20:50 ./usr/include/gerris/river.h
-rw-r--r-- root/root 5708 2017-11-23 20:50 ./usr/include/gerris/simulation.h
-rw-r--r-- root/root 3148 2017-11-23 20:50 ./usr/include/gerris/solid.h
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-rw-r--r-- root/root 1870 2017-11-23 20:50 ./usr/include/gerris/spatial.h
-rw-r--r-- root/root 4599 2017-11-23 20:50 ./usr/include/gerris/surface.h
-rw-r--r-- root/root 4072 2017-11-23 20:50 ./usr/include/gerris/tension.h
-rw-r--r-- root/root 5180 2017-11-23 20:50 ./usr/include/gerris/timestep.h
-rw-r--r-- root/root 1589 2017-11-23 20:50 ./usr/include/gerris/unstructured.h
-rw-r--r-- root/root 10845 2017-11-23 20:50 ./usr/include/gerris/utils.h
-rw-r--r-- root/root 9866 2017-11-23 20:50 ./usr/include/gerris/variable.h
-rw-r--r-- root/root 195 2017-11-23 20:50 ./usr/include/gerris/version.h
-rw-r--r-- root/root 6340 2017-11-23 20:50 ./usr/include/gerris/vof.h
-rw-r--r-- root/root 2073 2017-11-23 20:50 ./usr/include/gerris/wave.h
-rw-r--r-- root/root 1525 2017-11-23 20:50 ./usr/include/gfs.h
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/libgfs2D-1.3.so -> libgfs2D-1.3.so.2.0.0
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/libgfs2D.so -> libgfs2D-1.3.so.2.0.0
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/libgfs3D-1.3.so -> libgfs3D-1.3.so.2.0.0
lrwxrwxrwx root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/libgfs3D.so -> libgfs3D-1.3.so.2.0.0
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 274 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/pkgconfig/gerris2D.pc
-rw-r--r-- root/root 263 2017-11-23 20:50 ./usr/lib/arm-linux-gnueabihf/pkgconfig/gerris3D.pc
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-11-23 20:50 ./usr/share/doc/libgfs-dev/
-rw-r--r-- root/root 228 2017-11-23 20:50 ./usr/share/doc/libgfs-dev/changelog.Debian.armhf.gz
-rw-r--r-- root/root 4622 2017-11-23 20:50 ./usr/share/doc/libgfs-dev/changelog.Debian.gz
-rw-r--r-- root/root 66168 2013-12-06 15:56 ./usr/share/doc/libgfs-dev/changelog.gz
-rw-r--r-- root/root 1933 2016-09-26 18:35 ./usr/share/doc/libgfs-dev/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 94512
Build-Time: 1765
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 674
Job: gerris_20131206+dfsg-18
Machine Architecture: armhf
Package: gerris
Package-Time: 2494
Source-Version: 20131206+dfsg-18
Space: 94512
Status: successful
Version: 20131206+dfsg-18+b1
--------------------------------------------------------------------------------
Finished at 2017-12-13T19:53:37Z
Build needed 00:41:34, 94512k disc space