Raspbian Package Auto-Building

genometools → 1.6.5+ds-2.2 → armhf → 2024-05-24 13:14:59

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| genometools 1.6.5+ds-2.2 (armhf)             Fri, 24 May 2024 12:43:39 +0000 |
+==============================================================================+

Package: genometools
Version: 1.6.5+ds-2.2
Source Version: 1.6.5+ds-2.2
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-787f5827-d082-45df-bf6f-eec2ce7a5aa4' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.6 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.3 MB]
Fetched 29.9 MB in 10s (2891 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'genometools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/genometools.git
Please use:
git clone https://salsa.debian.org/med-team/genometools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 7374 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main genometools 1.6.5+ds-2.2 (dsc) [2913 B]
Get:2 http://172.17.4.1/private trixie-staging/main genometools 1.6.5+ds-2.2 (tar) [7300 kB]
Get:3 http://172.17.4.1/private trixie-staging/main genometools 1.6.5+ds-2.2 (diff) [71.0 kB]
Fetched 7374 kB in 1s (7935 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/genometools-AjyFgP/genometools-1.6.5+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/genometools-AjyFgP' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ySwVu4/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ySwVu4/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ySwVu4/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (10.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libalgorithm-diff-perl libalgorithm-merge-perl
  libarchive-cpio-perl libk5crypto3 libltdl-dev libltdl7 libmail-sendmail-perl
  libnumber-compare-perl libsys-hostname-long-perl libtext-glob-perl netbase
  sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (78.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14846 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper (>= 13), debhelper-compat (= 13), dh-python, liblua5.1-0-dev, lua-md5-dev, lua-filesystem-dev, lua-lpeg-dev, libcairo2-dev, zlib1g-dev, libbz2-dev, libexpat1-dev, libsqlite3-dev, libbam-dev, libpango1.0-dev, libtre-dev, texlive-latex-base, texlive-latex-extra, texlive-fonts-extra, texlive-latex-recommended, texlive-fonts-recommended, python3-all, python3-setuptools, asciidoc-base, libxml2-utils, xsltproc, ruby, docbook-xsl, docbook-xml, faketime, imagemagick
Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper (>= 13), debhelper-compat (= 13), dh-python, liblua5.1-0-dev, lua-md5-dev, lua-filesystem-dev, lua-lpeg-dev, libcairo2-dev, zlib1g-dev, libbz2-dev, libexpat1-dev, libsqlite3-dev, libbam-dev, libpango1.0-dev, libtre-dev, texlive-latex-base, texlive-latex-extra, texlive-fonts-extra, texlive-latex-recommended, texlive-fonts-recommended, python3-all, python3-setuptools, asciidoc-base, libxml2-utils, xsltproc, ruby, docbook-xsl, docbook-xml, faketime, imagemagick
dpkg-deb: building package 'sbuild-build-depends-genometools-dummy' in '/<<BUILDDIR>>/resolver-ySwVu4/apt_archive/sbuild-build-depends-genometools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-genometools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ Sources [707 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ Packages [784 B]
Fetched 2824 B in 0s (14.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install genometools build dependencies (apt-based resolver)
-----------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libalgorithm-diff-perl libalgorithm-merge-perl
  libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
  libnumber-compare-perl libsys-hostname-long-perl libtext-glob-perl
  util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  asciidoc-base asciidoc-common ca-certificates dh-python docbook-xml
  docbook-xsl faketime fontconfig fontconfig-config fonts-dejavu-core
  fonts-dejavu-mono fonts-lmodern gir1.2-freedesktop gir1.2-freedesktop-dev
  gir1.2-glib-2.0 gir1.2-glib-2.0-dev gir1.2-harfbuzz-0.0 gir1.2-pango-1.0
  hicolor-icon-theme icu-devtools imagemagick imagemagick-6-common
  imagemagick-6.q16 libapache-pom-java libbam-dev libblkid-dev libbrotli-dev
  libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2
  libcairo2 libcairo2-dev libcommons-logging-java libcommons-parent-java
  libdatrie-dev libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1
  libexpat1-dev libfaketime libffi-dev libfftw3-double3 libfontbox-java
  libfontconfig-dev libfontconfig1 libfreetype-dev libfreetype6 libfribidi-dev
  libfribidi0 libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3
  libgraphite2-dev libgssapi-krb5-2 libharfbuzz-cairo0 libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz-subset0 libharfbuzz0b
  libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice-dev libice6
  libicu-dev libjbig0 libjpeg62-turbo libkpathsea6 libkrb5-3 liblcms2-2
  liblerc4 liblqr-1-0 liblua5.1-0 liblua5.1-0-dev liblzo2-2
  libmagickcore-6.q16-7t64 libmagickwand-6.q16-7t64 libmount-dev
  libncurses-dev libncurses6 libnsl2 libopenjp2-7 libpango-1.0-0
  libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0
  libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
  libpcre2-posix3 libpdfbox-java libpixman-1-0 libpixman-1-dev libpkgconf3
  libpng-dev libpng16-16t64 libpotrace0 libptexenc1 libpython3-stdlib
  libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal
  libpython3.12-stdlib libraw23 libreadline-dev libruby libruby3.1t64
  libselinux1-dev libsepol-dev libsharpyuv0 libsm-dev libsm6 libsqlite3-dev
  libsynctex2 libsysprof-capture-4-dev libteckit0 libtexlua53-5 libthai-data
  libthai-dev libthai0 libtiff6 libtirpc3t64 libtre-dev libtre5 libwebp7
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-dev libxau-dev libxau6
  libxaw7 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev
  libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev
  libxft2 libxi6 libxml2-utils libxmu6 libxpm4 libxrender-dev libxrender1
  libxslt1.1 libxt6t64 libyaml-0-2 libzzip-0-13t64 lua-filesystem
  lua-filesystem-dev lua-lpeg lua-lpeg-dev lua-md5 lua-md5-dev media-types
  openssl pango1.0-tools pkgconf pkgconf-bin preview-latex-style python3
  python3-all python3-distutils python3-lib2to3 python3-minimal
  python3-packaging python3-pkg-resources python3-setuptools python3.11
  python3.11-minimal python3.12 python3.12-minimal rake ruby ruby-net-telnet
  ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1
  rubygems-integration sgml-data t1utils tex-common texlive-base
  texlive-binaries texlive-fonts-extra texlive-fonts-recommended
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-pictures ucf uuid-dev x11-common x11proto-core-dev x11proto-dev
  xdg-utils xml-core xorg-sgml-doctools xsltproc xtrans-dev zlib1g-dev
Suggested packages:
  asciidoc-doc docbook-utils source-highlight flit python3-build
  python3-installer python3-wheel docbook docbook-defguide docbook-dsssl
  dbtoepub docbook-xsl-doc-html | docbook-xsl-doc-pdf | docbook-xsl-doc-text
  | docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java libxalan2-java
  libxslthl-java xalan imagemagick-6-doc autotrace cups-bsd | lpr | lprng curl
  enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer
  povray radiance sane-utils transfig libraw-bin libcairo2-doc
  libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java
  libdatrie-doc libfftw3-bin libfftw3-dev freetype2-doc low-memory-monitor
  libglib2.0-doc libgdk-pixbuf2.0-bin libgraphite2-utils krb5-doc krb5-user
  libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc
  libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e
  libheif-plugin-svtenc libice-doc icu-doc liblcms2-utils
  libmagickcore-6.q16-7-extra ncurses-doc libpango1.0-doc readline-doc
  libsm-doc sqlite3-doc libthai-doc tre-agrep libx11-doc libxcb-doc
  libxext-doc graphicsmagick python3-doc python3-tk python3-venv
  python-setuptools-doc python3.11-venv python3.11-doc binfmt-support
  python3.12-venv python3.12-doc ri ruby-dev bundler perlsgml w3-recs opensp
  ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec
  texlive-binaries-sse2 hintview texlive-fonts-extra-doc
  texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex
  python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc
  texlive-science texlive-latex-recommended-doc texlive-luatex
  texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex
Recommended packages:
  xmlto libmagickcore-6.q16-7-extra ghostscript netpbm bzip2-doc
  shared-mime-info xdg-user-dirs libheif-plugin-aomenc libheif-plugin-x265
  libtool-bin fonts-urw-base35 libgpm2 libpng-tools zip fonts-lato
  libjs-jquery lmodern dvisvgm cm-super fonts-adf-accanthis fonts-adf-berenis
  fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-cantarell
  fonts-clear-sans fonts-comfortaa fonts-comic-neue fonts-croscore
  fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-extra
  fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf
  fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot
  fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-inter
  fonts-linuxlibertine fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core
  fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-paratype
  fonts-roboto-slab fonts-roboto-unhinted fonts-sil-andika fonts-sil-charis
  fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus
  fonts-sil-gentiumplus-compact fonts-stix texlive-fonts-extra-links tex-gyre
  tipa default-jre libspreadsheet-parseexcel-perl texlive-plain-generic tk
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  asciidoc-base asciidoc-common ca-certificates dh-python docbook-xml
  docbook-xsl faketime fontconfig fontconfig-config fonts-dejavu-core
  fonts-dejavu-mono fonts-lmodern gir1.2-freedesktop gir1.2-freedesktop-dev
  gir1.2-glib-2.0 gir1.2-glib-2.0-dev gir1.2-harfbuzz-0.0 gir1.2-pango-1.0
  hicolor-icon-theme icu-devtools imagemagick imagemagick-6-common
  imagemagick-6.q16 libapache-pom-java libbam-dev libblkid-dev libbrotli-dev
  libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2
  libcairo2 libcairo2-dev libcommons-logging-java libcommons-parent-java
  libdatrie-dev libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1
  libexpat1-dev libfaketime libffi-dev libfftw3-double3 libfontbox-java
  libfontconfig-dev libfontconfig1 libfreetype-dev libfreetype6 libfribidi-dev
  libfribidi0 libgirepository-2.0-0 libglib2.0-0t64 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3
  libgraphite2-dev libgssapi-krb5-2 libharfbuzz-cairo0 libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz-subset0 libharfbuzz0b
  libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice-dev libice6
  libicu-dev libjbig0 libjpeg62-turbo libkpathsea6 libkrb5-3 liblcms2-2
  liblerc4 liblqr-1-0 liblua5.1-0 liblua5.1-0-dev liblzo2-2
  libmagickcore-6.q16-7t64 libmagickwand-6.q16-7t64 libmount-dev
  libncurses-dev libncurses6 libnsl2 libopenjp2-7 libpango-1.0-0
  libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0
  libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
  libpcre2-posix3 libpdfbox-java libpixman-1-0 libpixman-1-dev libpkgconf3
  libpng-dev libpng16-16t64 libpotrace0 libptexenc1 libpython3-stdlib
  libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal
  libpython3.12-stdlib libraw23 libreadline-dev libruby libruby3.1t64
  libselinux1-dev libsepol-dev libsharpyuv0 libsm-dev libsm6 libsqlite3-dev
  libsynctex2 libsysprof-capture-4-dev libteckit0 libtexlua53-5 libthai-data
  libthai-dev libthai0 libtiff6 libtirpc3t64 libtre-dev libtre5 libwebp7
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-dev libxau-dev libxau6
  libxaw7 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev
  libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev
  libxft2 libxi6 libxml2-utils libxmu6 libxpm4 libxrender-dev libxrender1
  libxslt1.1 libxt6t64 libyaml-0-2 libzzip-0-13t64 lua-filesystem
  lua-filesystem-dev lua-lpeg lua-lpeg-dev lua-md5 lua-md5-dev media-types
  openssl pango1.0-tools pkgconf pkgconf-bin preview-latex-style python3
  python3-all python3-distutils python3-lib2to3 python3-minimal
  python3-packaging python3-pkg-resources python3-setuptools python3.11
  python3.11-minimal python3.12 python3.12-minimal rake ruby ruby-net-telnet
  ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1
  rubygems-integration sbuild-build-depends-genometools-dummy sgml-data
  t1utils tex-common texlive-base texlive-binaries texlive-fonts-extra
  texlive-fonts-recommended texlive-latex-base texlive-latex-extra
  texlive-latex-recommended texlive-pictures ucf uuid-dev x11-common
  x11proto-core-dev x11proto-dev xdg-utils xml-core xorg-sgml-doctools
  xsltproc xtrans-dev zlib1g-dev
0 upgraded, 223 newly installed, 0 to remove and 0 not upgraded.
Need to get 793 MB of archives.
After this operation, 2366 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ySwVu4/apt_archive ./ sbuild-build-depends-genometools-dummy 0.invalid.0 [1068 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libfftw3-double3 armhf 3.3.10-1+b2 [312 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.6.2-1 [80.9 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libpng16-16t64 armhf 1.6.43-5 [261 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b4 [367 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.15.0-1.1 [369 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.4.0-0.1 [111 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libdav1d7 armhf 1.3.0-2+rpi1 [214 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libheif-plugin-dav1d armhf 1.17.6-1 [9300 B]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libde265-0 armhf 1.0.15-1+rpi1 [140 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libheif-plugin-libde265 armhf 1.17.6-1 [12.2 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libheif1 armhf 1.17.6-1 [237 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1+b1 [27.2 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf liblcms2-2 armhf 2.14-2+b1 [125 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0t64 armhf 2.80.2-1 [1290 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf liblqr-1-0 armhf 0.4.2-2.1+b1 [23.3 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libopenjp2-7 armhf 2.5.0-2+b3 [165 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libraw23 armhf 0.21.1-7+rpi1 [363 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.20-1 [35.8 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [132 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.4.0-0.1 [265 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-4 [299 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libwebpdemux2 armhf 1.4.0-0.1 [110 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libwebpmux3 armhf 1.4.0-0.1 [120 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.12.2-1 [127 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.17.0-2 [140 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1+b1 [45.3 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf imagemagick-6-common all 8:6.9.12.98+dfsg1-5.2 [67.1 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libmagickcore-6.q16-7t64 armhf 8:6.9.12.98+dfsg1-5.2 [1516 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libmagickwand-6.q16-7t64 armhf 8:6.9.12.98+dfsg1-5.2 [291 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.9-1+b1 [804 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.9-1+b1 [1574 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libkrb5-3 armhf 1.20.1-6+b4 [286 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b4 [111 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [70.4 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libnsl2 armhf 1.3.0-3+b1 [34.6 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.9-1+b1 [1697 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.9-1+b1 [602 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B]
Get:51 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.8-1 [27.4 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libpython3.12-minimal armhf 3.12.3-1+b1 [794 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf python3.12-minimal armhf 3.12.3-1+b1 [1757 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.2.1-3 [1306 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20240203 [158 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf asciidoc-common all 10.2.0-2 [104 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf xml-core all 0.19 [20.1 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf docbook-xsl all 1.79.2+dfsg-7 [1221 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxml2-utils armhf 2.9.14+dfsg-1.3+b4 [96.0 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf xsltproc armhf 1.1.35-1 [126 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf asciidoc-base all 10.2.0-2 [85.3 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-2 [241 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.12.3-1 [77.6 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf python3-distutils all 3.12.3-1 [131 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-2 [468 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20240422 [107 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf sgml-data all 2.0.11+nmu1 [179 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf docbook-xml all 4.5-13 [77.4 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libfaketime armhf 0.9.10-2.1 [46.2 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf faketime armhf 0.9.10-2.1 [17.6 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.15.0-1.1 [461 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf fonts-lmodern all 2.005-1 [4540 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf gir1.2-glib-2.0 armhf 2.80.2-1 [190 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [471 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.17.0-2 [114 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.17.0-2 [105 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-3+b1 [429 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libcairo-gobject2 armhf 1.18.0-3+b1 [128 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf gir1.2-freedesktop armhf 1.80.1-3 [46.9 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf gir1.2-glib-2.0-dev armhf 2.80.2-1 [893 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf gir1.2-freedesktop-dev armhf 1.80.1-3 [42.3 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-2 [62.8 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.3.0-2+b1 [2152 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz-gobject0 armhf 8.3.0-2+b1 [1782 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf gir1.2-harfbuzz-0.0 armhf 8.3.0-2+b1 [1794 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3+b1 [70.0 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-2 [168 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-3 [34.3 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-2 [46.1 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.52.2+ds-1 [192 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.52.2+ds-1 [41.5 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.52.2+ds-1 [31.0 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1+b1 [46.2 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libpangoxft-1.0-0 armhf 1.52.2+ds-1 [24.9 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf gir1.2-pango-1.0 armhf 1.52.2+ds-1 [38.5 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4+b1 [176 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf imagemagick-6.q16 armhf 8:6.9.12.98+dfsg1-5.2 [290 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf imagemagick armhf 8:6.9.12.98+dfsg1-5.2 [19.4 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libapache-pom-java all 29-2 [5276 B]
Get:104 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [903 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libbam-dev armhf 0.1.19+dfsg-6 [105 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf uuid-dev armhf 2.40.1-1 [42.0 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libblkid-dev armhf 2.40.1-1 [184 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libbrotli-dev armhf 1.1.0-2 [292 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5.1 [27.2 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf liblzo2-2 armhf 2.10-2 [50.2 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libcairo-script-interpreter2 armhf 1.18.0-3+b1 [49.4 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.6.2-1 [136 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.43-5 [339 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libfreetype-dev armhf 2.13.2+dfsg-1+b4 [533 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libfontconfig-dev armhf 2.15.0-1.1 [387 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libffi-dev armhf 3.4.6-1 [61.4 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-data all 2.80.2-1 [1265 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-bin armhf 2.80.2-1 [114 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf python3-packaging all 24.0-1 [45.5 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-dev-bin armhf 2.80.2-1 [166 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libsepol-dev armhf 3.5-2+b1 [311 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4+b1 [211 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4+b1 [202 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4+b1 [55.4 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4+b1 [651 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libselinux1-dev armhf 3.5-2+b2 [144 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libmount-dev armhf 2.40.1-1 [25.9 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libsysprof-capture-4-dev armhf 46.0-1 [47.9 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libgirepository-2.0-0 armhf 2.80.2-1 [120 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-dev armhf 2.80.2-1 [1595 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-dev armhf 0.42.2-1+b1 [490 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1+b1 [49.9 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1+b1 [31.8 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf x11proto-dev all 2024.1-1 [603 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf x11proto-core-dev all 2024.1-1 [3312 B]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libice-dev armhf 2:1.0.10-1+b1 [56.4 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libsm-dev armhf 2:1.2.3-1+b1 [33.7 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libxau-dev armhf 1:1.0.9-1 [22.3 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libxcb1-dev armhf 1.17.0-2 [176 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libx11-dev armhf 2:1.8.7-1 [807 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0-dev armhf 1.17.0-2 [117 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0-dev armhf 1.17.0-2 [108 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libxext-dev armhf 2:1.3.4-1+b1 [99.4 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libxrender-dev armhf 1:0.9.10-1.1+b1 [32.5 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libcairo2-dev armhf 1.18.0-3+b1 [43.2 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libcommons-parent-java all 56-1 [10.8 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libcommons-logging-java all 1.3.0-1 [68.6 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libdatrie-dev armhf 0.2.13-3 [15.1 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libfontbox-java all 1:1.8.16-5 [211 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libfribidi-dev armhf 1.0.13-3+b1 [109 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-dev armhf 1.3.14-2 [20.0 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz-cairo0 armhf 8.3.0-2+b1 [1792 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz-icu0 armhf 8.3.0-2+b1 [1768 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz-subset0 armhf 8.3.0-2+b1 [2149 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4+b1 [9970 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz-dev armhf 8.3.0-2+b1 [1897 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libkpathsea6 armhf 2023.20230311.66589-9 [144 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf liblua5.1-0 armhf 5.1.5-9+b1 [85.2 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.5-2 [80.7 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.5-2 [289 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-4 [123 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf liblua5.1-0-dev armhf 5.1.5-9+b1 [114 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libthai-dev armhf 0.1.29-2 [21.8 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libxft-dev armhf 2.3.6-1+b1 [63.6 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf pango1.0-tools armhf 1.52.2+ds-1 [38.5 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libpango1.0-dev armhf 1.52.2+ds-1 [154 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libpdfbox-java all 1:1.8.16-5 [5527 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libpotrace0 armhf 1.16-2 [23.6 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libptexenc1 armhf 2023.20230311.66589-9 [42.9 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libpython3.12-stdlib armhf 3.12.3-1+b1 [1791 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf rubygems-integration all 1.18 [6704 B]
Get:181 http://172.17.4.1/private trixie-staging/main armhf ruby3.1 armhf 3.1.2-8.3+rpi1 [664 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf ruby-rubygems all 3.4.20-1 [309 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf ruby armhf 1:3.1+nmu1 [5584 B]
Get:184 http://172.17.4.1/private trixie-staging/main armhf rake all 13.0.6-3 [83.9 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf ruby-net-telnet all 0.2.0-1 [13.1 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf ruby-webrick all 1.8.1-1 [51.4 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf ruby-xmlrpc all 0.3.2-2 [24.4 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf ruby-sdbm armhf 1.0.0-5+rpi1+b1 [13.4 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf libyaml-0-2 armhf 0.2.5-1 [44.6 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf libruby3.1t64 armhf 3.1.2-8.3+rpi1 [5022 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf libruby armhf 1:3.1+nmu1 [4664 B]
Get:192 http://172.17.4.1/private trixie-staging/main armhf libsqlite3-dev armhf 3.45.3-1 [952 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf libsynctex2 armhf 2023.20230311.66589-9 [48.4 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf libteckit0 armhf 2.5.12+ds1-1 [259 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf libtexlua53-5 armhf 2023.20230311.66589-9 [82.9 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf libtre5 armhf 0.8.0-7 [50.8 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf libtre-dev armhf 0.8.0-7 [27.4 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf libxt6t64 armhf 1:1.2.1-1.2 [157 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf libxmu6 armhf 2:1.1.3-3+b2 [50.7 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf libxpm4 armhf 1:3.5.17-1+b1 [49.7 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf libxaw7 armhf 2:1.0.14-1+b2 [163 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf libxi6 armhf 2:1.8.1-1 [73.4 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf libzzip-0-13t64 armhf 0.13.72+dfsg.1-1.2 [52.7 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf lua-filesystem armhf 1.8.0-3 [11.0 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf lua-filesystem-dev armhf 1.8.0-3 [24.7 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf lua-lpeg armhf 1.0.2-2 [32.3 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf lua-lpeg-dev armhf 1.0.2-2 [49.5 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf lua-md5 armhf 1.2+git+1+8d87fee-2 [11.6 kB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf lua-md5-dev armhf 1.2+git+1+8d87fee-2 [18.7 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf tex-common all 6.18 [32.5 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf preview-latex-style all 13.2-1 [350 kB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf python3.12 armhf 3.12.3-1+b1 [660 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf python3-all armhf 3.11.8-1 [1056 B]
Get:214 http://172.17.4.1/private trixie-staging/main armhf t1utils armhf 1.41-4 [52.3 kB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf texlive-binaries armhf 2023.20230311.66589-9 [5566 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf texlive-base all 2023.20240207-1 [22.0 MB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf texlive-fonts-extra all 2023.20240207-1 [629 MB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf texlive-fonts-recommended all 2023.20240207-1 [4990 kB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf texlive-latex-base all 2023.20240207-1 [1255 kB]
Get:221 http://172.17.4.1/private trixie-staging/main armhf texlive-latex-recommended all 2023.20240207-1 [8843 kB]
Get:222 http://172.17.4.1/private trixie-staging/main armhf texlive-pictures all 2023.20240207-1 [16.7 MB]
Get:223 http://172.17.4.1/private trixie-staging/main armhf texlive-latex-extra all 2023.20240207-1 [19.7 MB]
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Creating config file /etc/papersize with new version
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Updating certificates in /etc/ssl/certs...
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python3.12: can't get files for byte-compilation
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tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
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Setting up libxext-dev:armhf (2:1.3.4-1+b1) ...
Setting up texlive-fonts-recommended (2023.20240207-1) ...
Setting up libxrender-dev:armhf (1:0.9.10-1.1+b1) ...
Setting up libxft-dev:armhf (2.3.6-1+b1) ...
Setting up libharfbuzz-dev:armhf (8.3.0-2+b1) ...
Setting up texlive-latex-extra (2023.20240207-1) ...
Setting up libcairo2-dev:armhf (1.18.0-3+b1) ...
Setting up libpango1.0-dev:armhf (1.52.2+ds-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up docbook-xml (4.5-13) ...
Processing triggers for sgml-base (1.31) ...
Setting up sbuild-build-depends-genometools-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.38-8+rpi1) ...
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.4.0-172-generic armhf (armv8l)
Toolchain package versions: binutils_2.41-6+rpi1+b1 dpkg-dev_1.22.5+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-16.1+rpi1 gcc-12_12.3.0-14+rpi1 gcc-13_13.2.0-16.1+rpi1 libc6-dev_2.38-8+rpi1 libstdc++-12-dev_12.3.0-14+rpi1 libstdc++-13-dev_13.2.0-16.1+rpi1 libstdc++6_14-20240221-2.1+rpi1 linux-libc-dev_6.5.6-1+rpi1+b1
Package versions: adduser_3.137 apt_2.9.3 asciidoc-base_10.2.0-2 asciidoc-common_10.2.0-2 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1+b1 binutils-arm-linux-gnueabihf_2.41-6+rpi1+b1 binutils-common_2.41-6+rpi1+b1 bsdextrautils_2.40.1-1 bsdutils_1:2.40.1-1 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-14+rpi1 cpp-13_13.2.0-16.1+rpi1 cpp-13-arm-linux-gnueabihf_13.2.0-16.1+rpi1 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.3 debianutils_5.17 dh-autoreconf_20 dh-python_6.20240422 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-3 docbook-xml_4.5-13 docbook-xsl_1.79.2+dfsg-7 dpkg_1.22.5+rpi1 dpkg-dev_1.22.5+rpi1 dwz_0.15-1+b2 e2fsprogs_1.47.1-1 fakeroot_1.33-1 faketime_0.9.10-2.1 file_1:5.45-3 findutils_4.9.0-5 fontconfig_2.15.0-1.1 fontconfig-config_2.15.0-1.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lmodern_2.005-1 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-16.1+rpi1 g++-13-arm-linux-gnueabihf_13.2.0-16.1+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-14+rpi1 gcc-12-base_12.3.0-14+rpi1 gcc-13_13.2.0-16.1+rpi1 gcc-13-arm-linux-gnueabihf_13.2.0-16.1+rpi1 gcc-13-base_13.2.0-16.1+rpi1 gcc-14-base_14-20240221-2.1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gir1.2-freedesktop_1.80.1-3 gir1.2-freedesktop-dev_1.80.1-3 gir1.2-glib-2.0_2.80.2-1 gir1.2-glib-2.0-dev_2.80.2-1 gir1.2-harfbuzz-0.0_8.3.0-2+b1 gir1.2-pango-1.0_1.52.2+ds-1 gnupg_2.2.40-3 gnupg-l10n_2.2.40-3 gnupg-utils_2.2.40-3 gpg_2.2.40-3 gpg-agent_2.2.40-3 gpg-wks-client_2.2.40-3 gpg-wks-server_2.2.40-3 gpgconf_2.2.40-3 gpgsm_2.2.40-3 gpgv_2.2.40-3 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hicolor-icon-theme_0.17-2 hostname_3.23+nmu2 icu-devtools_72.1-4+b1 imagemagick_8:6.9.12.98+dfsg1-5.2 imagemagick-6-common_8:6.9.12.98+dfsg1-5.2 imagemagick-6.q16_8:6.9.12.98+dfsg1-5.2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20240117-1 krb5-locales_1.20.1-6 libacl1_2.3.2-2+rpi1 libalgorithm-diff-perl_1.201-1 libalgorithm-merge-perl_0.08-5 libapache-pom-java_29-2 libapt-pkg6.0t64_2.9.3 libarchive-cpio-perl_0.10-3 libarchive-zip-perl_1.68-1 libasan8_14-20240221-2.1+rpi1 libassuan0_2.5.6-1 libatomic1_14-20240221-2.1+rpi1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2 libaudit1_1:3.1.2-2 libbam-dev_0.1.19+dfsg-6 libbinutils_2.41-6+rpi1+b1 libblkid-dev_2.40.1-1 libblkid1_2.40.1-1 libbrotli-dev_1.1.0-2 libbrotli1_1.1.0-2 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libbz2-dev_1.0.8-5.1 libc-bin_2.38-8+rpi1 libc-dev-bin_2.38-8+rpi1 libc6_2.38-8+rpi1 libc6-dev_2.38-8+rpi1 libcairo-gobject2_1.18.0-3+b1 libcairo-script-interpreter2_1.18.0-3+b1 libcairo2_1.18.0-3+b1 libcairo2-dev_1.18.0-3+b1 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcap2-bin_1:2.66-5 libcc1-0_14-20240221-2.1+rpi1 libcom-err2_1.47.1-1 libcommons-logging-java_1.3.0-1 libcommons-parent-java_56-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41-6+rpi1+b1 libctf0_2.41-6+rpi1+b1 libdata-optlist-perl_0.114-1 libdatrie-dev_0.2.13-3 libdatrie1_0.2.13-3 libdav1d7_1.3.0-2+rpi1 libdb5.3t64_5.3.28+dfsg2-7 libde265-0_1.0.15-1+rpi1 libdebconfclient0_0.271 libdebhelper-perl_13.15.3 libdeflate0_1.20-1 libdpkg-perl_1.22.5+rpi1 libelf1t64_0.191-1+rpi1 libexpat1_2.6.2-1 libexpat1-dev_2.6.2-1 libext2fs2t64_1.47.1-1 libfakeroot_1.33-1 libfaketime_0.9.10-2.1 libffi-dev_3.4.6-1 libffi8_3.4.6-1 libfftw3-double3_3.3.10-1+b2 libfile-stripnondeterminism-perl_1.13.1-1 libfontbox-java_1:1.8.16-5 libfontconfig-dev_2.15.0-1.1 libfontconfig1_2.15.0-1.1 libfreetype-dev_2.13.2+dfsg-1+b4 libfreetype6_2.13.2+dfsg-1+b4 libfribidi-dev_1.0.13-3+b1 libfribidi0_1.0.13-3+b1 libgcc-12-dev_12.3.0-14+rpi1 libgcc-13-dev_13.2.0-16.1+rpi1 libgcc-s1_14-20240221-2.1+rpi1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgirepository-2.0-0_2.80.2-1 libglib2.0-0t64_2.80.2-1 libglib2.0-bin_2.80.2-1 libglib2.0-data_2.80.2-1 libglib2.0-dev_2.80.2-1 libglib2.0-dev-bin_2.80.2-1 libgmp10_2:6.3.0+dfsg-2 libgnutls30t64_3.8.5-2 libgomp1_14-20240221-2.1+rpi1 libgpg-error0_1.49-2 libgraphite2-3_1.3.14-2 libgraphite2-dev_1.3.14-2 libgssapi-krb5-2_1.20.1-6+b4 libharfbuzz-cairo0_8.3.0-2+b1 libharfbuzz-dev_8.3.0-2+b1 libharfbuzz-gobject0_8.3.0-2+b1 libharfbuzz-icu0_8.3.0-2+b1 libharfbuzz-subset0_8.3.0-2+b1 libharfbuzz0b_8.3.0-2+b1 libheif-plugin-dav1d_1.17.6-1 libheif-plugin-libde265_1.17.6-1 libheif1_1.17.6-1 libhogweed6t64_3.9.1-2.2 libice-dev_2:1.0.10-1+b1 libice6_2:1.0.10-1+b1 libicu-dev_72.1-4+b1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1+b1 libjpeg62-turbo_1:2.1.5-3 libk5crypto3_1.20.1-6+b4 libkeyutils1_1.6.3-3 libkpathsea6_2023.20230311.66589-9 libkrb5-3_1.20.1-6+b4 libkrb5support0_1.20.1-6+b4 libksba8_1.6.6-1 liblcms2-2_2.14-2+b1 libldap-2.5-0_2.5.17+dfsg-1 liblerc4_4.0.0+ds-4+b1 liblqr-1-0_0.4.2-2.1+b1 libltdl-dev_2.4.7-7+b1 libltdl7_2.4.7-7+b1 liblua5.1-0_5.1.5-9+b1 liblua5.1-0-dev_5.1.5-9+b1 liblz4-1_1.9.4-1+rpi1+b2 liblzma5_5.6.1+really5.4.5-1 liblzo2-2_2.10-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmagickcore-6.q16-7t64_8:6.9.12.98+dfsg1-5.2 libmagickwand-6.q16-7t64_8:6.9.12.98+dfsg1-5.2 libmail-sendmail-perl_0.80-3 libmd0_1.1.0-2 libmount-dev_2.40.1-1 libmount1_2.40.1-1 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncurses-dev_6.5-2 libncurses6_6.5-2 libncursesw6_6.5-2 libnettle8t64_3.9.1-2.2 libnpth0t64_1.6-3.1 libnsl2_1.3.0-3+b1 libnumber-compare-perl_0.03-3 libopenjp2-7_2.5.0-2+b3 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpango-1.0-0_1.52.2+ds-1 libpango1.0-dev_1.52.2+ds-1 libpangocairo-1.0-0_1.52.2+ds-1 libpangoft2-1.0-0_1.52.2+ds-1 libpangoxft-1.0-0_1.52.2+ds-1 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-util-perl_1.102-3 libpcre2-16-0_10.42-4+b1 libpcre2-32-0_10.42-4+b1 libpcre2-8-0_10.42-4+b1 libpcre2-dev_10.42-4+b1 libpcre2-posix3_10.42-4+b1 libpcre3_2:8.39-15 libpdfbox-java_1:1.8.16-5 libperl5.38t64_5.38.2-4 libpipeline1_1.5.7-2 libpixman-1-0_0.42.2-1+b1 libpixman-1-dev_0.42.2-1+b1 libpkgconf3_1.8.1-1 libpng-dev_1.6.43-5 libpng16-16t64_1.6.43-5 libpotrace0_1.16-2 libptexenc1_2023.20230311.66589-9 libpython3-stdlib_3.11.8-1 libpython3.11-minimal_3.11.9-1+b1 libpython3.11-stdlib_3.11.9-1+b1 libpython3.12-minimal_3.12.3-1+b1 libpython3.12-stdlib_3.12.3-1+b1 libraw23_0.21.1-7+rpi1 libreadline-dev_8.2-4 libreadline8t64_8.2-4 libruby_1:3.1+nmu1 libruby3.1t64_3.1.2-8.3+rpi1 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+rpi1 libselinux1_3.5-2+b2 libselinux1-dev_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b1 libsepol-dev_3.5-2+b1 libsepol1_3.1-1 libsepol2_3.5-2+b1 libsframe1_2.41-6+rpi1+b1 libsharpyuv0_1.4.0-0.1 libsm-dev_2:1.2.3-1+b1 libsm6_2:1.2.3-1+b1 libsmartcols1_2.40.1-1 libsqlite3-0_3.45.3-1 libsqlite3-dev_3.45.3-1 libss2_1.47.1-1 libssl1.1_1.1.1o-1 libssl3t64_3.2.1-3 libstdc++-12-dev_12.3.0-14+rpi1 libstdc++-13-dev_13.2.0-16.1+rpi1 libstdc++6_14-20240221-2.1+rpi1 libsub-exporter-perl_0.990-1 libsub-install-perl_0.929-1 libsub-override-perl_0.11-1 libsub-prototype-perl_0.03-2+b2 libsynctex2_2023.20230311.66589-9 libsys-hostname-long-perl_1.5-3 libsysprof-capture-4-dev_46.0-1 libsystemd0_255.3-1+rpi1+b1 libtasn1-6_4.19.0-3+b2 libteckit0_2.5.12+ds1-1 libtexlua53-5_2023.20230311.66589-9 libtext-glob-perl_0.11-3 libthai-data_0.1.29-2 libthai-dev_0.1.29-2 libthai0_0.1.29-2 libtiff6_4.5.1+git230720-4 libtinfo6_6.5-2 libtirpc-common_1.3.4+ds-1.3 libtirpc3t64_1.3.4+ds-1.3 libtool_2.4.7-7 libtre-dev_0.8.0-7 libtre5_0.8.0-7 libubsan1_14-20240221-2.1+rpi1 libuchardet0_0.0.8-1 libudev1_255.3-1+rpi1+b1 libunistring2_1.0-2 libunistring5_1.2-1 libuuid1_2.40.1-1 libwebp7_1.4.0-0.1 libwebpdemux2_1.4.0-0.1 libwebpmux3_1.4.0-0.1 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libx11-dev_2:1.8.7-1 libxau-dev_1:1.0.9-1 libxau6_1:1.0.9-1 libxaw7_2:1.0.14-1+b2 libxcb-render0_1.17.0-2 libxcb-render0-dev_1.17.0-2 libxcb-shm0_1.17.0-2 libxcb-shm0-dev_1.17.0-2 libxcb1_1.17.0-2 libxcb1-dev_1.17.0-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.4-1+b1 libxext6_2:1.3.4-1+b1 libxft-dev_2.3.6-1+b1 libxft2_2.3.6-1+b1 libxi6_2:1.8.1-1 libxml2_2.9.14+dfsg-1.3+b4 libxml2-utils_2.9.14+dfsg-1.3+b4 libxmu6_2:1.1.3-3+b2 libxpm4_1:3.5.17-1+b1 libxrender-dev_1:0.9.10-1.1+b1 libxrender1_1:0.9.10-1.1+b1 libxslt1.1_1.1.35-1 libxt6t64_1:1.2.1-1.2 libxxhash0_0.8.2-2+b1 libyaml-0-2_0.2.5-1 libzstd1_1.5.5+dfsg2-2 libzzip-0-13t64_0.13.72+dfsg.1-1.2 linux-libc-dev_6.5.6-1+rpi1+b1 login_1:4.13+dfsg1-4 logsave_1.47.1-1 lsb-base_11.6+rpi1 lua-filesystem_1.8.0-3 lua-filesystem-dev_1.8.0-3 lua-lpeg_1.0.2-2 lua-lpeg-dev_1.0.2-2 lua-md5_1.2+git+1+8d87fee-2 lua-md5-dev_1.2+git+1+8d87fee-2 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 media-types_10.1.0 mount_2.40.1-1 nano_8.0-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.2.1-3 pango1.0-tools_1.52.2+ds-1 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.38.2-4 perl-base_5.38.2-4 perl-modules-5.38_5.38.2-4 pinentry-curses_1.2.1-3 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 preview-latex-style_13.2-1 python3_3.11.8-1 python3-all_3.11.8-1 python3-distutils_3.12.3-1 python3-lib2to3_3.12.3-1 python3-minimal_3.11.8-1 python3-packaging_24.0-1 python3-pkg-resources_68.1.2-2 python3-setuptools_68.1.2-2 python3.11_3.11.9-1+b1 python3.11-minimal_3.11.9-1+b1 python3.12_3.12.3-1+b1 python3.12-minimal_3.12.3-1+b1 rake_13.0.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 ruby_1:3.1+nmu1 ruby-net-telnet_0.2.0-1 ruby-rubygems_3.4.20-1 ruby-sdbm_1.0.0-5+rpi1+b1 ruby-webrick_1.8.1-1 ruby-xmlrpc_0.3.2-2 ruby3.1_3.1.2-8.3+rpi1 rubygems-integration_1.18 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-genometools-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sgml-base_1.31 sgml-data_2.0.11+nmu1 sysvinit-utils_3.09-1 t1utils_1.41-4 tar_1.35+dfsg-3 tex-common_6.18 texlive-base_2023.20240207-1 texlive-binaries_2023.20230311.66589-9 texlive-fonts-extra_2023.20240207-1 texlive-fonts-recommended_2023.20240207-1 texlive-latex-base_2023.20240207-1 texlive-latex-extra_2023.20240207-1 texlive-latex-recommended_2023.20240207-1 texlive-pictures_2023.20240207-1 tzdata_2024a-4 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40.1-1 util-linux-extra_2.40.1-1 uuid-dev_2.40.1-1 x11-common_1:7.7+23 x11proto-core-dev_2024.1-1 x11proto-dev_2024.1-1 xdg-utils_1.1.3-4.1 xml-core_0.19 xorg-sgml-doctools_1:1.11-1.1 xsltproc_1.1.35-1 xtrans-dev_1.4.0-1 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: Signature made Sat Apr 27 01:43:05 2024 UTC
gpgv:                using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D
gpgv:                issuer "vorlon@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./genometools_1.6.5+ds-2.2.dsc: no acceptable signature found
dpkg-source: info: extracting genometools in /<<BUILDDIR>>/genometools-1.6.5+ds
dpkg-source: info: unpacking genometools_1.6.5+ds.orig.tar.xz
dpkg-source: info: unpacking genometools_1.6.5+ds-2.2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying reproducible
dpkg-source: info: applying adding_soname
dpkg-source: info: applying libbam-fix
dpkg-source: info: applying remove-gitignores
dpkg-source: info: applying fix-exports
dpkg-source: info: applying split-manuals
dpkg-source: info: applying use-mx32
dpkg-source: info: applying gtdoc-traverse-sorted
dpkg-source: info: applying ignore-m32-m64.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-787f5827-d082-45df-bf6f-eec2ce7a5aa4
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package genometools
dpkg-buildpackage: info: source version 1.6.5+ds-2.2
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/genometools-1.6.5+ds'
mkdir -p obj
/usr/bin/make cleanup
make[2]: Entering directory '/<<BUILDDIR>>/genometools-1.6.5+ds'
rm -rf lib
find obj -name '*.o' -delete
rm -f obj/amalgamation.c
rm -rf testsuite/stest_testsuite testsuite/stest_stest_tests
/usr/bin/make -s -C ./doc/devguide clean
make[3]: Entering directory '/<<BUILDDIR>>/genometools-1.6.5+ds/doc/devguide'
make[3]: Leaving directory '/<<BUILDDIR>>/genometools-1.6.5+ds/doc/devguide'
/usr/bin/make -s -C ./doc/manuals clean
make[3]: Entering directory '/<<BUILDDIR>>/genometools-1.6.5+ds/doc/manuals'
make[3]: Leaving directory '/<<BUILDDIR>>/genometools-1.6.5+ds/doc/manuals'
rm -f doc/manuals/api_reference.tex \
          doc/manuals/gtscript_reference.tex
find doc . -name "*.toc" -delete
rm -f www/genometools.org/htdocs/images/callbacks.png \
          www/genometools.org/htdocs/images/parsed.png    \
          www/genometools.org/htdocs/images/constructed.png \
          doc/manuals/annotationsketch.pdf
rm -f www/genometools.org/htdocs/examples.html
rm -rf doc/manpages
find testdata \( -name '*.esq' -o -name '*.sds' -o -name '*.ssp' \
	 -o -name '*.ois' -o -name '*.al1' \)  \
   -a ! \( -name 'foo.[36][24].*' \) -delete
find obj -name '*.splint' -delete
find obj -name '*.check' -delete
find obj -name '*.sb' -delete
rm -rf bin obj
rm -rf gtpython/build
/usr/bin/make -s -C ./doc/manuals cleanup
make[3]: Entering directory '/<<BUILDDIR>>/genometools-1.6.5+ds/doc/manuals'
make[3]: Leaving directory '/<<BUILDDIR>>/genometools-1.6.5+ds/doc/manuals'
make[2]: Leaving directory '/<<BUILDDIR>>/genometools-1.6.5+ds'
cd doc/manuals; /usr/bin/make cleanup
make[2]: Entering directory '/<<BUILDDIR>>/genometools-1.6.5+ds/doc/manuals'
rm -f *.aux  *.log *.bbl  *.blg *.dvi *.mer *.mct *.mbd comment.cut
rm -f *.out *.toc
rm -f U89959.fna read[12].fna 
rm -f reads.al1 reads.esq reads.lcp reads.llv reads.prj reads.suf
rm -f tallymer-tmp.tex
rm -f tagerator-tmp.tex Q1.gz pck-human.*
rm -f readjoiner.pdf hop.pdf ltrharvest.pdf ltrdigest.pdf uniquesub.pdf matstat.pdf mgth.pdf packedindex.pdf repfind.pdf tallymer.pdf tagerator.pdf genomediff.pdf
make[2]: Leaving directory '/<<BUILDDIR>>/genometools-1.6.5+ds/doc/manuals'
# should be deleted inside doc/manuals/Makefile
rm -f doc/manuals/annotationsketch.out \
      doc/manuals/api_reference.tex    \
      doc/manuals/gtscript_reference.tex
find doc . -name "*.toc" -delete
find testdata \( -name '*.ois' -or -name '*.sds' -or -name '*.esq' -or \
      -name '*.ssp' -or -name '*.des' -or -name "*.md5"  \) -and \( -not \
      -name '*foo.32.*' -not -name '*foo.64.*' \) -delete
rm -f www/genometools.org/htdocs/images/callbacks.png \
      www/genometools.org/htdocs/images/parsed.png    \
      www/genometools.org/htdocs/images/constructed.png \
      doc/manuals/annotationsketch.pdf
rm -f www/genometools.org/htdocs/examples.html \
      www/genometools.org/htdocs/libgenometools.html
rm -rf gtpython/build .pybuild gtpython/GenomeTools.egg-info
if test -f "debian/docs.html"; then mv debian/docs.html www/genometools.org/htdocs/; fi
rm -rf obj
make[1]: Leaving directory '/<<BUILDDIR>>/genometools-1.6.5+ds'
   dh_clean
 debian/rules binary-arch
dh binary-arch --with python3
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/genometools-1.6.5+ds'
cp debian/doc-imgs/*png www/genometools.org/htdocs/images
cp www/genometools.org/htdocs/docs.html debian/
faketime -f "`TZ=UTC date -d @1714182112 +'%Y-%m-%d %H:%M:%S'`" dh_auto_build -- verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals
	make -j4 "INSTALL=install --strip-program=true" verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals
make[2]: Entering directory '/<<BUILDDIR>>/genometools-1.6.5+ds'
echo '[create obj/gt_config.h]'
[create obj/gt_config.h]
test -d obj || mkdir -p obj
test -d obj/src/core || mkdir -p obj/src/core
test -d obj/src/core || mkdir -p obj/src/core
test -d obj/src/core || mkdir -p obj/src/core
(echo '#ifndef GT_CONFIG_H' ;\
echo '#define GT_CONFIG_H' ;\
echo '#define GT_CC "'`cc --version | head -n 1`\" ;\
echo '#define GT_CFLAGS "-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=.=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3"' ;\
echo '-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 ' | \
sed -e 's/\([^\]\)"/\1\\"/g' -e 's/^"/\\"/g' -e 's/$/"/' \
    -e 's/^/#define GT_CPPFLAGS "/'; \
  echo '#define GT_VERSION "'`cat VERSION`\" ) > obj/gt_config.h
cc -c src/core/alphabet.c -o obj/src/core/alphabet.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/array.c -o obj/src/core/array.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/array2dim.c -o obj/src/core/array2dim.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cat VERSION | \
          sed 's/\([0-9]*\)\.[0-9]*\.[0-9]*/#define GT_MAJOR_VERSION \1/' >> obj/gt_config.h
cat VERSION | \
          sed 's/[0-9]*\.\([0-9]*\)\.[0-9]*/#define GT_MINOR_VERSION \1/' >> obj/gt_config.h
cat VERSION | \
          sed 's/[0-9]*\.[0-9]*\.\([0-9]*\)/#define GT_MICRO_VERSION \1/' >> obj/gt_config.h
echo '#endif' >> obj/gt_config.h
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/array2dim.c -o obj/src/core/array2dim.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array2dim.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/array3dim.c -o obj/src/core/array3dim.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array2dim_sparse.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/basename.c -o obj/src/core/basename.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/array3dim.c -o obj/src/core/array3dim.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array3dim.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bioseq.c -o obj/src/core/bioseq.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/basename.c -o obj/src/core/basename.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/basename.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/array.c -o obj/src/core/array.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/array.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bioseq_iterator.o
cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bioseq_col.o
test -d obj/src/core || mkdir -p obj/src/core
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/alphabet.c -o obj/src/core/alphabet.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/alphabet.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bioseq.c -o obj/src/core/bioseq.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bioseq.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitbuffer.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop16.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bittab.c -o obj/src/core/bittab.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop32.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bool_matrix.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/bsearch.c -o obj/src/core/bsearch.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop64.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/byte_popcount.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/byte_select.c -o obj/src/core/byte_select.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bitpackstringop8.o
cc -c src/core/byte_select.c -o obj/src/core/byte_select.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/byte_select.o
test -d obj/src/core || mkdir -p obj/src/core
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bittab.c -o obj/src/core/bittab.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bittab.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/bsearch.c -o obj/src/core/bsearch.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/bsearch.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring.o
cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackarray.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring-int.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring32.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring64.o
cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/class_alloc.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring16.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/class_alloc_lock.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/codon_iterator.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/colorspace.c -o obj/src/core/colorspace.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/codon_iterator_simple.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/codon_iterator_encseq.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/colorspace.c -o obj/src/core/colorspace.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/colorspace.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/compat.c -o obj/src/core/compat.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/compat.c -o obj/src/core/compat.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/compat.o
cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/combinatorics.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/complement.c -o obj/src/core/complement.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/countingsort.c -o obj/src/core/countingsort.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/compact_ulong_store.o
cc -c src/core/complement.c -o obj/src/core/complement.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/complement.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/cstr.c -o obj/src/core/cstr.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/countingsort.c -o obj/src/core/countingsort.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/countingsort.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/checkbitpackstring8.o
cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/cstr_array.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/cstr.c -o obj/src/core/cstr.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/cstr.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/cstr_table.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/dlist.c -o obj/src/core/dlist.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/desc_buffer.o
cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/disc_distri.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/csvline_reader.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dynalloc.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/eansi.c -o obj/src/core/eansi.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dyn_bittab.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/eansi.c -o obj/src/core/eansi.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/eansi.o
cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dual-pivot-qsort.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/encseq.c -o obj/src/core/encseq.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/ebzlib.o
cc -c src/core/dlist.c -o obj/src/core/dlist.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/dlist.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_access_type.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_metadata.o
cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_col.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/endianess.c -o obj/src/core/endianess.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/endianess.c -o obj/src/core/endianess.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/endianess.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/error.c -o obj/src/core/error.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_ptr.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/example.c -o obj/src/core/example.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/error.c -o obj/src/core/error.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/error.o
cc -c src/core/example.c -o obj/src/core/example.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/example.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/example_a.c -o obj/src/core/example_a.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/example_b.c -o obj/src/core/example_b.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq_options.o
cc -c src/core/example_a.c -o obj/src/core/example_a.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/example_a.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/ezlib.c -o obj/src/core/ezlib.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/fa.c -o obj/src/core/fa.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/example_b.c -o obj/src/core/example_b.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/example_b.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/fasta.c -o obj/src/core/fasta.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/ezlib.c -o obj/src/core/ezlib.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/ezlib.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/fasta.c -o obj/src/core/fasta.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta.o
cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader_rec.o
cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader_fsm.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/fastq.c -o obj/src/core/fastq.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/fastq.c -o obj/src/core/fastq.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fastq.o
cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fasta_reader_seqit.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/file.c -o obj/src/core/file.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/fileutils.c -o obj/src/core/fileutils.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/fa.c -o obj/src/core/fa.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fa.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/gc_content.c -o obj/src/core/gc_content.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/fileutils.c -o obj/src/core/fileutils.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/fileutils.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/grep.c -o obj/src/core/grep.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/file.c -o obj/src/core/file.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/file.o
cc -c src/core/gc_content.c -o obj/src/core/gc_content.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/gc_content.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/hashmap.c -o obj/src/core/hashmap.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/gtdatapath.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/hashtable.c -o obj/src/core/hashtable.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/hashmap.c -o obj/src/core/hashmap.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/hashmap.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/init.c -o obj/src/core/init.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/grep.c -o obj/src/core/grep.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/grep.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/init.c -o obj/src/core/init.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/init.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/io.c -o obj/src/core/io.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/io.c -o obj/src/core/io.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/io.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/log.c -o obj/src/core/log.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/log.c -o obj/src/core/log.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/log.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/logger.c -o obj/src/core/logger.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/hashtable.c -o obj/src/core/hashtable.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/hashtable.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/ma.c -o obj/src/core/ma.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/logger.c -o obj/src/core/logger.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/logger.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/mapspec.c -o obj/src/core/mapspec.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/ma.c -o obj/src/core/ma.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/ma.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/interval_tree.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/mapspec.c -o obj/src/core/mapspec.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/mapspec.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/mathsupport.o
cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_fingerprint.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_encoder.o
cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/msort.c -o obj/src/core/msort.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_seqid.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/multithread.c -o obj/src/core/multithread.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/multithread.c -o obj/src/core/multithread.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/multithread.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/option.c -o obj/src/core/option.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/md5_tab.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/orf.c -o obj/src/core/orf.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/orf.c -o obj/src/core/orf.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/orf.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/output_file.c -o obj/src/core/output_file.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/output_file.c -o obj/src/core/output_file.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/output_file.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/parseutils.c -o obj/src/core/parseutils.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/msort.c -o obj/src/core/msort.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/msort.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/password_entry.c -o obj/src/core/password_entry.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/password_entry.c -o obj/src/core/password_entry.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/password_entry.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/phase.c -o obj/src/core/phase.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/phase.c -o obj/src/core/phase.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/phase.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/process.c -o obj/src/core/process.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/parseutils.c -o obj/src/core/parseutils.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/parseutils.o
cc -c src/core/process.c -o obj/src/core/process.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/process.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/progressbar.c -o obj/src/core/progressbar.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/progressbar.c -o obj/src/core/progressbar.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/progressbar.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/qsort-ulong.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/quality.c -o obj/src/core/quality.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/quality.c -o obj/src/core/quality.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/quality.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/queue.c -o obj/src/core/queue.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/option.c -o obj/src/core/option.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/option.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/qsort_r.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/range.c -o obj/src/core/range.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/queue.c -o obj/src/core/queue.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/queue.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/readmode.c -o obj/src/core/readmode.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/readmode.c -o obj/src/core/readmode.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/readmode.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/safearith.c -o obj/src/core/safearith.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/range.c -o obj/src/core/range.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/range.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/score_function.c -o obj/src/core/score_function.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/score_function.c -o obj/src/core/score_function.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/score_function.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/safearith.c -o obj/src/core/safearith.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/safearith.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/seq.c -o obj/src/core/seq.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/seq.c -o obj/src/core/seq.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/seq_col.c -o obj/src/core/seq_col.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/score_matrix.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_info_cache.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/seq_col.c -o obj/src/core/seq_col.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_col.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_iterator.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/radix_sort.o
cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_iterator_sequence_buffer.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/seq_iterator_fastq.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_dust.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_embl.o
cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_fasta.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_fastq.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/showtime.c -o obj/src/core/showtime.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/showtime.c -o obj/src/core/showtime.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/showtime.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/sig.c -o obj/src/core/sig.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_plain.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/sig.c -o obj/src/core/sig.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sig.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/splitter.c -o obj/src/core/splitter.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/spacepeak.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/str.c -o obj/src/core/str.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/splitter.c -o obj/src/core/splitter.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/splitter.o
cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/sequence_buffer_gb.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/str_array.c -o obj/src/core/str_array.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/str_cache.c -o obj/src/core/str_cache.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/str.c -o obj/src/core/str.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/str.o
cc -c src/core/str_cache.c -o obj/src/core/str_cache.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/str_cache.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/strand.c -o obj/src/core/strand.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/strcmp.c -o obj/src/core/strcmp.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/str_array.c -o obj/src/core/str_array.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/str_array.o
cc -c src/core/strand.c -o obj/src/core/strand.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/strand.o
cc -c src/core/strcmp.c -o obj/src/core/strcmp.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/strcmp.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/string_distri.c -o obj/src/core/string_distri.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/symbol.c -o obj/src/core/symbol.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/thread.c -o obj/src/core/thread.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/symbol.c -o obj/src/core/symbol.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/symbol.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/timer.c -o obj/src/core/timer.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/string_distri.c -o obj/src/core/string_distri.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/string_distri.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/thread.c -o obj/src/core/thread.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/thread.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/tool.c -o obj/src/core/tool.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/tool.c -o obj/src/core/tool.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/tool.o
cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/tokenizer.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/timer.c -o obj/src/core/timer.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/timer.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/toolbox.c -o obj/src/core/toolbox.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/tool_iterator.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/trans_table.c -o obj/src/core/trans_table.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/tooldriver.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/translator.c -o obj/src/core/translator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/toolbox.c -o obj/src/core/toolbox.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/toolbox.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/unit_testing.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/version.c -o obj/src/core/version.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/version.c -o obj/src/core/version.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/version.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/versionfunc.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/warning.c -o obj/src/core/warning.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/translator.c -o obj/src/core/translator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/translator.o
cc -c src/core/warning.c -o obj/src/core/warning.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/warning.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/xansi.c -o obj/src/core/xansi.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/xbsd.c -o obj/src/core/xbsd.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/trans_table.c -o obj/src/core/trans_table.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/trans_table.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/xbsd.c -o obj/src/core/xbsd.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xbsd.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/xposix.c -o obj/src/core/xposix.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xbzlib.o
cc -c src/core/xansi.c -o obj/src/core/xansi.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xansi.o
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/xzlib.c -o obj/src/core/xzlib.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/core || mkdir -p obj/src/core
cc -c src/core/yarandom.c -o obj/src/core/yarandom.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/core/yarandom.c -o obj/src/core/yarandom.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/yarandom.o
cc -c src/core/xposix.c -o obj/src/core/xposix.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xposix.o
cc -c src/core/xzlib.c -o obj/src/core/xzlib.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/xzlib.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/add_introns_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/add_ids_stream.o
cc -c src/core/encseq.c -o obj/src/core/encseq.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/core/encseq.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/add_ids_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/alignment.c -o obj/src/extended/alignment.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/aligned_segments_pile.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/aligned_segment.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/anno_db_schema.o
cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/affinealign.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/array_in_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/array_out_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bed_in_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/alignment.c -o obj/src/extended/alignment.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/alignment.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/assembly_stats_calculator.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bitinstream.o
cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bitoutstream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/buffer_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_check_stream.o
cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/anno_db_gfflike.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/blast_process_call.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_stream.o
cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/bed_parser.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/chain.c -o obj/src/extended/chain.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/check_boundaries_visitor.o
cc -c src/extended/chain.c -o obj/src/extended/chain.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/chain.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_check_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cds_visitor.o
cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/clustered_set.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/chseqids_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/coin_hmm.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/collect_ids_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/comment_node.o
cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/clustered_set_uf.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/condenseq_search_arguments.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/consensus_sa.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_gene.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_splice_form.o
cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/condenseq.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_variable_strands.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/compressed_bitsequence.o
cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/cstr_iterator.o
test -d obj/src/extended || mkdir -p obj/src/extended
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/condenseq_creator.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dice_hmm.o
cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/csa_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dot_out_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dot_visitor.o
cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dup_feature_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/editscript.c -o obj/src/extended/editscript.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/dup_feature_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/elias_gamma.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/diagonalbandalign.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/diagonalbandalign_affinegapcost.o
cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/encdesc_header_io.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/eof_node.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/evaluator.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/extract_feature_sequence.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/extract_feature_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/fasta_header_iterator.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/extract_feature_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_in_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/encdesc.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_index.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_index_memory.o
cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_info.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_node_observer.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_node_iterator.o
cc -c src/extended/editscript.c -o obj/src/extended/editscript.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/editscript.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_out_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gap_str.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_escaping.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_in_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/genome_node.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_in_stream_plain.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_numsorted_out_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_linesorted_out_stream.o
cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_out_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/feature_node.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_output.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/golomb.c -o obj/src/extended/golomb.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/golomb.c -o obj/src/extended/golomb.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/golomb.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/globalchaining.o
cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtdatahelp.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_out_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_in_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/hcr.c -o obj/src/extended/hcr.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/hmm.c -o obj/src/extended/hmm.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gtf_parser.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/hmm.c -o obj/src/extended/hmm.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/hmm.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/hcr.c -o obj/src/extended/hcr.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/hcr.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/gff3_parser.o
cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/id_to_md5_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/hpol_processor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/inter_feature_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/intset.c -o obj/src/extended/intset.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/inter_feature_visitor.o
cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/id_to_md5_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/intset.c -o obj/src/extended/intset.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/huffcode.o
cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset_16.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset_32.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/io_function_pointers.o
cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset_combined.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/intset_8.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/linspace_management.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/load_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/linearalign.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/luahelper.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/mapping.c -o obj/src/extended/mapping.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/linearalign_affinegapcost.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match.c -o obj/src/extended/match.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/kmer_database.o
cc -c src/extended/mapping.c -o obj/src/extended/mapping.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/mapping.o
cc -c src/extended/match.c -o obj/src/extended/match.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator.o
cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/luaserialize.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_blast.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_open.o
cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_blast.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match_last.c -o obj/src/extended/match_last.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match_open.c -o obj/src/extended/match_open.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_sw.o
cc -c src/extended/match_last.c -o obj/src/extended/match_last.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_last.o
cc -c src/extended/match_open.c -o obj/src/extended/match_open.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_open.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_sw.o
cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/match_iterator_last.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/maxcoordvalue.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/md5set.c -o obj/src/extended/md5set.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/md5_to_id_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/merge_feature_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/md5_to_id_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/merge_feature_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/md5set.c -o obj/src/extended/md5set.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/md5set.o
cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/meta_node.o
cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/merge_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/mutate.c -o obj/src/extended/mutate.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/multi_sanitizer_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/mutate.c -o obj/src/extended/mutate.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/mutate.o
cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/node_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/node_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/obo_stanza.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orf_finder_stream.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orf_iterator.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/multieoplist.o
cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orf_finder_visitor.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/obo_parse_tree.o
cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/permute_words.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/orphanage.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/priority_queue.o
cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/ranked_list.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/rcr.c -o obj/src/extended/rcr.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/rdb.c -o obj/src/extended/rdb.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 
cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.d -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<BUILDDIR>>/genometools-1.6.5+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -MM -MP -MT obj/src/extended/popcount_tab.o
test -d obj/src/extended || mkdir -p obj/src/extended
cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj   -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -I/usr/include/lua5.1  -Wdate-time -D_FORTIFY_SOURCE=2  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1  -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/sysprof-6  -g -O2 -Werror=implicit-function-declaration -ffile-p