Raspbian Package Auto-Building

Build log for genomethreader (1.7.3+dfsg-10) on armhf

genomethreader → 1.7.3+dfsg-10 → armhf → 2024-02-27 05:41:50 

sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019

+==============================================================================+
| genomethreader 1.7.3+dfsg-10 (armhf)         Tue, 27 Feb 2024 05:24:57 +0000 |
+==============================================================================+

Package: genomethreader
Version: 1.7.3+dfsg-10
Source Version: 1.7.3+dfsg-10
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-2b4da7c0-025e-4841-a24b-642914f7837a' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/genomethreader-3dPzOt/resolver-EqNu4b' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.1 MB]
Fetched 29.6 MB in 13s (2254 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'genomethreader' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/genomethreader.git
Please use:
git clone https://salsa.debian.org/med-team/genomethreader.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 40.0 MB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main genomethreader 1.7.3+dfsg-10 (dsc) [2236 B]
Get:2 http://172.17.4.1/private trixie-staging/main genomethreader 1.7.3+dfsg-10 (tar) [40.0 MB]
Get:3 http://172.17.4.1/private trixie-staging/main genomethreader 1.7.3+dfsg-10 (diff) [14.2 kB]
Fetched 40.0 MB in 5s (8562 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/genomethreader-3dPzOt/genomethreader-1.7.3+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/genomethreader-3dPzOt' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), genometools, libgenometools0-dev, libvmatch-dev, zlib1g-dev, libbz2-dev, libexpat1-dev, liblua5.1-0-dev, libtre-dev, asciidoctor, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), genometools, libgenometools0-dev, libvmatch-dev, zlib1g-dev, libbz2-dev, libexpat1-dev, liblua5.1-0-dev, libtre-dev, asciidoctor, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [428 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [510 B]
Fetched 1895 B in 0s (51.9 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  asciidoctor autoconf automake autopoint autotools-dev bsdextrautils
  ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono genometools
  genometools-common gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libbrotli1 libbsd0 libbz2-dev libcairo2 libdatrie1
  libdebhelper-perl libedit2 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgenometools0 libgenometools0-dev libglib2.0-0 libgraphite2-3
  libharfbuzz0b libicu72 liblua5.1-0 liblua5.1-0-dev libmagic-mgc libmagic1
  libncurses-dev libncurses6 libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpng16-16 libreadline-dev
  libruby libruby3.1 libsub-override-perl libthai-data libthai0 libtool
  libtre-dev libtre5 libuchardet0 libvmatch-dev libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1
  libyaml-0-2 lua-filesystem lua-lpeg lua-md5 m4 man-db openssl po-debconf
  rake ruby ruby-asciidoctor ruby-net-telnet ruby-rubygems ruby-sdbm
  ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff low-memory-monitor ncurses-doc
  readline-doc libtool-doc gfortran | fortran95-compiler gcj-jdk tre-agrep
  m4-doc apparmor less www-browser libmail-box-perl ri ruby-dev bundler
Recommended packages:
  curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs pkg-config libtool-bin libgpm2 libltdl-dev
  libmail-sendmail-perl zip fonts-lato libjs-jquery
The following NEW packages will be installed:
  asciidoctor autoconf automake autopoint autotools-dev bsdextrautils
  ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono genometools
  genometools-common gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libbrotli1 libbsd0 libbz2-dev libcairo2 libdatrie1
  libdebhelper-perl libedit2 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgenometools0 libgenometools0-dev libglib2.0-0 libgraphite2-3
  libharfbuzz0b libicu72 liblua5.1-0 liblua5.1-0-dev libmagic-mgc libmagic1
  libncurses-dev libncurses6 libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpng16-16 libreadline-dev
  libruby libruby3.1 libsub-override-perl libthai-data libthai0 libtool
  libtre-dev libtre5 libuchardet0 libvmatch-dev libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1
  libyaml-0-2 lua-filesystem lua-lpeg lua-md5 m4 man-db openssl po-debconf
  rake ruby ruby-asciidoctor ruby-net-telnet ruby-rubygems ruby-sdbm
  ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration
  sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 96 newly installed, 0 to remove and 9 not upgraded.
Need to get 41.5 MB of archives.
After this operation, 144 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.1.5-1 [1190 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20240203 [158 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf rubygems-integration all 1.18 [6704 B]
Get:14 http://172.17.4.1/private trixie-staging/main armhf rake all 13.0.6-3 [83.9 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf ruby-net-telnet all 0.2.0-1 [13.1 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf ruby-webrick all 1.8.1-1 [51.4 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf ruby-xmlrpc all 0.3.2-2 [24.4 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libruby armhf 1:3.1 [4968 B]
Get:19 http://172.17.4.1/private trixie-staging/main armhf ruby-sdbm armhf 1.0.0-5+rpi1 [15.9 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.8-1 [120 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libedit2 armhf 3.1-20230828-1 [76.0 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20240113-1 [80.9 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libyaml-0-2 armhf 0.2.5-1 [44.6 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libruby3.1 armhf 3.1.2-8 [5019 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf ruby3.1 armhf 3.1.2-8 [663 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf ruby-rubygems all 3.4.20-1 [309 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf ruby armhf 1:3.1 [5868 B]
Get:28 http://172.17.4.1/private trixie-staging/main armhf ruby-asciidoctor all 2.0.20-1 [212 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf asciidoctor all 2.0.20-1 [87.7 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.14.1 [85.6 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.14.1 [890 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.42-1 [260 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.15.0-1 [317 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.15.0-1 [369 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.15.0-1 [461 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.4-1 [1259 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf liblua5.1-0 armhf 5.1.5-9 [86.7 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-2 [62.8 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.3.0-2 [2152 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-2 [168 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-3 [34.3 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-2 [46.1 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-4 [189 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-4 [40.8 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-4 [31.1 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libtre5 armhf 0.8.0-7 [50.8 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf lua-filesystem armhf 1.8.0-3 [11.0 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf lua-lpeg armhf 1.0.2-2 [32.3 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf lua-md5 armhf 1.2+git+1+8d87fee-2 [11.6 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf genometools-common all 1.6.5+ds-2 [194 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf genometools armhf 1.6.5+ds-2 [1439 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-2 [130 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libgenometools0 armhf 1.6.5+ds-2 [1210 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libgenometools0-dev armhf 1.6.5+ds-2 [95.0 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20240113-1 [289 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-3 [124 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf liblua5.1-0-dev armhf 5.1.5-9 [116 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libtre-dev armhf 0.8.0-7 [27.4 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libvmatch-dev armhf 2.3.1+dfsg-9 [532 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libyaml-0-2:armhf (0.2.5-1) ...
Setting up libglib2.0-0:armhf (2.78.4-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.14.1) ...
Setting up libbrotli1:armhf (1.1.0-2) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up gettext-base (0.21-14) ...
Setting up m4 (1.4.19-4) ...
Setting up libvmatch-dev (2.3.1+dfsg-9) ...
Setting up file (1:5.45-2) ...
Setting up lua-filesystem:armhf (1.8.0-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up lua-md5:armhf (1.2+git+1+8d87fee-2) ...
Setting up libexpat1-dev:armhf (2.5.0-2) ...
Setting up libx11-data (2:1.8.7-1) ...
Setting up libncurses6:armhf (6.4+20240113-1) ...
Setting up ruby-net-telnet (0.2.0-1) ...
Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.42-1) ...
Setting up autopoint (0.21-14) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up autoconf (2.71-3) ...
Setting up ruby-webrick (1.8.1-1) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg-3) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up liblua5.1-0:armhf (5.1.5-9) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up libthai-data (0.1.29-2) ...
Setting up openssl (3.1.5-1) ...
Setting up libbsd0:armhf (0.11.8-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up ruby-xmlrpc (0.3.2-2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libtre-dev (0.8.0-7) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libncurses-dev:armhf (6.4+20240113-1) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-14) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.15.0-1) ...
Setting up libedit2:armhf (3.1-20230828-1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libreadline-dev:armhf (8.2-3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-2) ...
Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
146 added, 0 removed; done.
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.3.0-2) ...
Setting up libfontconfig1:armhf (2.15.0-1) ...
Setting up fontconfig (2.15.0-1) ...
Regenerating fonts cache... done.
Setting up liblua5.1-0-dev:armhf (5.1.5-9) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-4) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up rubygems-integration (1.18) ...
Setting up man-db (2.12.0-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-4) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-4) ...
Setting up debhelper (13.14.1) ...
Setting up genometools-common (1.6.5+ds-2) ...
Setting up libgenometools0 (1.6.5+ds-2) ...
Setting up libgenometools0-dev (1.6.5+ds-2) ...
Setting up genometools (1.6.5+ds-2) ...
Setting up libruby:armhf (1:3.1) ...
Setting up ruby-rubygems (3.4.20-1) ...
Setting up ruby (1:3.1) ...
Setting up ruby-asciidoctor (2.0.20-1) ...
Setting up rake (13.0.6-3) ...
Setting up asciidoctor (2.0.20-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up ruby-sdbm:armhf (1.0.0-5+rpi1) ...
Setting up libruby3.1:armhf (3.1.2-8) ...
Setting up ruby3.1 (3.1.2-8) ...
Processing triggers for libc-bin (2.37-15~deb13u1+rpi1) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.4+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-9+rpi1 gcc-12_12.3.0-14+rpi1 gcc-13_13.2.0-9+rpi1 libc6-dev_2.37-15~deb13u1+rpi1 libstdc++-12-dev_12.3.0-14+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 linux-libc-dev_6.5.6-1+rpi1+b1
Package versions: adduser_3.137 apt_2.7.11 asciidoctor_2.0.20-1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20240203 coreutils_9.4-3 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-14+rpi1 cpp-13_13.2.0-9+rpi1 dash_0.5.12-6 debconf_1.5.86 debhelper_13.14.1 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.4+rpi1 dpkg-dev_1.22.4+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.15.0-1 fontconfig-config_2.15.0-1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-9+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-14+rpi1 gcc-12-base_12.3.0-14+rpi1 gcc-13_13.2.0-9+rpi1 gcc-13-base_13.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 genometools_1.6.5+ds-2 genometools-common_1.6.5+ds-2 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20240117-1 krb5-locales_1.20.1-5 libacl1_2.3.2-1 libapt-pkg6.0_2.7.11 libarchive-zip-perl_1.68-1 libasan8_13.2.0-9+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-9+rpi1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2 libaudit1_1:3.1.2-2 libbinutils_2.41-6+rpi1 libblkid1_2.39.3-6 libbrotli1_1.1.0-2 libbsd0_0.11.8-1 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.37-15~deb13u1+rpi1 libc-dev-bin_2.37-15~deb13u1+rpi1 libc6_2.37-15~deb13u1+rpi1 libc6-dev_2.37-15~deb13u1+rpi1 libcairo2_1.18.0-1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcap2-bin_1:2.66-5 libcc1-0_13.2.0-9+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libdatrie1_0.2.13-3 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.14.1 libdpkg-perl_1.22.4+rpi1 libedit2_3.1-20230828-1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.33-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libfontconfig1_2.15.0-1 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.3.0-14+rpi1 libgcc-13-dev_13.2.0-9+rpi1 libgcc-s1_13.2.0-9+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgenometools0_1.6.5+ds-2 libgenometools0-dev_1.6.5+ds-2 libglib2.0-0_2.78.4-1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.3-1 libgomp1_13.2.0-9+rpi1 libgpg-error0_1.47-3 libgraphite2-3_1.3.14-2 libgssapi-krb5-2_1.20.1-5 libharfbuzz0b_8.3.0-2 libhogweed6_3.9.1-2 libicu72_72.1-4 libidn2-0_2.3.7-2 libisl23_0.26-3 libjansson4_2.14-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-3 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1+b1 liblua5.1-0_5.1.5-9 liblua5.1-0-dev_5.1.5-9 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncurses-dev_6.4+20240113-1 libncurses6_6.4+20240113-1 libncursesw6_6.4+20240113-1 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-cap_1:2.66-5 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpango-1.0-0_1.51.0+ds-4 libpangocairo-1.0-0_1.51.0+ds-4 libpangoft2-1.0-0_1.51.0+ds-4 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.38_5.38.2-3 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpng16-16_1.6.42-1 libreadline-dev_8.2-3 libreadline8_8.2-3 libruby_1:3.1 libruby3.1_3.1.2-8 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.5-1+rpi1 libselinux1_3.5-2 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsmartcols1_2.39.3-6 libsqlite3-0_3.45.1-1 libss2_1.47.0-2 libssl1.1_1.1.1o-1 libssl3_3.1.5-1 libstdc++-12-dev_12.3.0-14+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 libsub-override-perl_0.10-1 libsystemd0_255.3-1+rpi1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libthai-data_0.1.29-2 libthai0_0.1.29-2 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtre-dev_0.8.0-7 libtre5_0.8.0-7 libubsan1_13.2.0-9+rpi1 libuchardet0_0.0.8-1 libudev1_255.3-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libvmatch-dev_2.3.1+dfsg-9 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml2_2.9.14+dfsg-1.3 libxrender1_1:0.9.10-1.1 libxxhash0_0.8.2-2 libyaml-0-2_0.2.5-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1+b1 login_1:4.13+dfsg1-4 logsave_1.47.0-2 lsb-base_11.6+rpi1 lua-filesystem_1.8.0-3 lua-lpeg_1.0.2-2 lua-md5_1.2+git+1+8d87fee-2 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20240123-1 mount_2.39.3-6 nano_7.2-2 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 openssl_3.1.5-1 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.38_5.38.2-3 pinentry-curses_1.2.1-3 po-debconf_1.0.21+nmu1 rake_13.0.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 ruby_1:3.1 ruby-asciidoctor_2.0.20-1 ruby-net-telnet_0.2.0-1 ruby-rubygems_3.4.20-1 ruby-sdbm_1.0.0-5+rpi1 ruby-webrick_1.8.1-1 ruby-xmlrpc_0.3.2-2 ruby3.1_3.1.2-8 rubygems-integration_1.18 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.08-6 tar_1.35+dfsg-3 tzdata_2024a-1 usrmerge_39 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: genomethreader
Binary: genomethreader
Architecture: any
Version: 1.7.3+dfsg-10
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Homepage: https://genomethreader.org
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/genomethreader
Vcs-Git: https://salsa.debian.org/med-team/genomethreader.git
Testsuite: autopkgtest
Testsuite-Triggers: genometools, ruby
Build-Depends: debhelper-compat (= 13), genometools, libgenometools0-dev, libvmatch-dev, zlib1g-dev, libbz2-dev, libexpat1-dev, liblua5.1-0-dev, libtre-dev, asciidoctor
Package-List:
 genomethreader deb science optional arch=any
Checksums-Sha1:
 84e7de5ac11ef4305a5e40eddb1c07383c464964 39993616 genomethreader_1.7.3+dfsg.orig.tar.xz
 f890cd97e5199f865f5e5fcaebc7ad3042be82b4 14160 genomethreader_1.7.3+dfsg-10.debian.tar.xz
Checksums-Sha256:
 d19808894b1c86312b51f1aeb6e11f5ba0dfc8dcf237bf08fc0615d26b0cf051 39993616 genomethreader_1.7.3+dfsg.orig.tar.xz
 1969812375367ab0c159fe01244cd2ae79d1c1f3bb55bba365ea6f6eb8958664 14160 genomethreader_1.7.3+dfsg-10.debian.tar.xz
Files:
 62eb8a06280490f22b646147f0e0f444 39993616 genomethreader_1.7.3+dfsg.orig.tar.xz
 fd558cdc8a120fdbcdb95f32c005a27d 14160 genomethreader_1.7.3+dfsg-10.debian.tar.xz

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gpgv: Signature made Sat Feb 24 19:14:33 2024 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./genomethreader_1.7.3+dfsg-10.dsc: no acceptable signature found
dpkg-source: info: extracting genomethreader in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking genomethreader_1.7.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking genomethreader_1.7.3+dfsg-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-ftbfs-with-ruby-3.2.patch
dpkg-source: info: applying debian-gt-libs.patch
dpkg-source: info: applying gt-path-fix.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying search-paths.patch
dpkg-source: info: applying m32-m64-ignore.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying disable-fastdp-tests.patch
dpkg-source: info: applying extend-clean.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=539dea8b567c411499a729ba3d4ba4c9
JOURNAL_STREAM=8:41227
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-2b4da7c0-025e-4841-a24b-642914f7837a
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c46708
XDG_SESSION_TYPE=unspecified

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package genomethreader
dpkg-buildpackage: info: source version 1.7.3+dfsg-10
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
make licensemanager=no opt=yes 64bit=no cleanup
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf obj lib
rm -rf testsuite/stest_testsuite testsuite/stest_stest_tests
rm -rf bin
find gthdata -name '*.des' | xargs rm -f
find gthdata -name '*.esq' | xargs rm -f
find gthdata -name '*.md5' | xargs rm -f
find gthdata -name '*.ois' | xargs rm -f
find gthdata -name '*.sds' | xargs rm -f
find gthdata -name '*.suf' | xargs rm -f
find gthdata -name '*.bck' | xargs rm -f
find gthdata -name '*.llv' | xargs rm -f
find gthdata -name '*.bwt' | xargs rm -f
find gthdata -name '*.tis' | xargs rm -f
find gthdata -name '*.ssp' | xargs rm -f
find gthdata -name '*.lcp' | xargs rm -f
find gthdata -name '*.sti1' | xargs rm -f
find testdata -name '*.des' | xargs rm -f
find testdata -name '*.esq' | xargs rm -f
find testdata -name '*.md5' | xargs rm -f
find testdata -name '*.ois' | xargs rm -f
find testdata -name '*.sds' | xargs rm -f
find testdata -name '*.suf' | xargs rm -f
find testdata -name '*.bck' | xargs rm -f
find testdata -name '*.llv' | xargs rm -f
find testdata -name '*.bwt' | xargs rm -f
find testdata -name '*.tis' | xargs rm -f
find testdata -name '*.ssp' | xargs rm -f
find testdata -name '*.lcp' | xargs rm -f
find testdata -name '*.sti1' | xargs rm -f
find testdata -name '*.al1' | xargs rm -f
find testdata -name '*.prj' | xargs rm -f
find testdata -name '*.polya*' | xargs rm -f
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -rf bin/bssm debian/bssm bin/gthdata debian/gthdata
rm -rf /<<PKGBUILDDIR>>/debian/man
rm -f debian/*substvars
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make licensemanager=no opt=yes 64bit=no
make[2]: Entering directory '/<<PKGBUILDDIR>>'
[create obj/gth_config.h]
[compile findfile.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/findfile.c -o obj/src/libgenomethreader/findfile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/findfile.c -o obj/src/libgenomethreader/findfile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/findfile.o
[compile gt_align_dna.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gt_align_dna.c -o obj/src/libgenomethreader/gt_align_dna.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gt_align_dna.c -o obj/src/libgenomethreader/gt_align_dna.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gt_align_dna.o
[compile gt_gthgetseq.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gt_gthgetseq.c -o obj/src/libgenomethreader/gt_gthgetseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gt_gthgetseq.c -o obj/src/libgenomethreader/gt_gthgetseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gt_gthgetseq.o
[compile gthmkvtree.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gthmkvtree.c -o obj/src/libgenomethreader/gthmkvtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gthmkvtree.c -o obj/src/libgenomethreader/gthmkvtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gthmkvtree.o
[compile gthpolyafunc.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gthpolyafunc.c -o obj/src/libgenomethreader/gthpolyafunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gthpolyafunc.c -o obj/src/libgenomethreader/gthpolyafunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gthpolyafunc.o
[compile gthpre.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gthpre.c -o obj/src/libgenomethreader/gthpre.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gthpre.c -o obj/src/libgenomethreader/gthpre.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gthpre.o
[compile gthversionfunc.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gthversionfunc.c -o obj/src/libgenomethreader/gthversionfunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gthversionfunc.c -o obj/src/libgenomethreader/gthversionfunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gthversionfunc.o
[compile gthvmatch.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gthvmatch.c -o obj/src/libgenomethreader/gthvmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gthvmatch.c -o obj/src/libgenomethreader/gthvmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gthvmatch.o
[compile jt.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/jt.c -o obj/src/libgenomethreader/jt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/jt.c -o obj/src/libgenomethreader/jt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/jt.o
[compile jt_align_dna.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/jt_align_dna.c -o obj/src/libgenomethreader/jt_align_dna.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/jt_align_dna.c -o obj/src/libgenomethreader/jt_align_dna.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/jt_align_dna.o
[compile jt_align_protein.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/jt_align_protein.c -o obj/src/libgenomethreader/jt_align_protein.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/jt_align_protein.c -o obj/src/libgenomethreader/jt_align_protein.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/jt_align_protein.o
[compile seq_con_multiseq.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/seq_con_multiseq.c -o obj/src/libgenomethreader/seq_con_multiseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/seq_con_multiseq.c -o obj/src/libgenomethreader/seq_con_multiseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/seq_con_multiseq.o
[compile ags.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/ags.c -o obj/src/gth/ags.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/ags.c -o obj/src/gth/ags.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/ags.o
[compile ags_build.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/ags_build.c -o obj/src/gth/ags_build.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/ags_build.c -o obj/src/gth/ags_build.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/ags_build.o
[compile align_dna.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/align_dna.c -o obj/src/gth/align_dna.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/align_dna.c -o obj/src/gth/align_dna.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/align_dna.o
[compile align_protein.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/align_protein.c -o obj/src/gth/align_protein.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/align_protein.c -o obj/src/gth/align_protein.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/align_protein.o
[compile backtrace_path.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/backtrace_path.c -o obj/src/gth/backtrace_path.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/backtrace_path.c -o obj/src/gth/backtrace_path.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/backtrace_path.o
[compile bssm_helper.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_helper.c -o obj/src/gth/bssm_helper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_helper.c -o obj/src/gth/bssm_helper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_helper.o
[compile bssm_param.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_param.c -o obj/src/gth/bssm_param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_param.c -o obj/src/gth/bssm_param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_param.o
[compile bssm_param_rmsd.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_param_rmsd.c -o obj/src/gth/bssm_param_rmsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_param_rmsd.c -o obj/src/gth/bssm_param_rmsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_param_rmsd.o
[compile bssm_seq_processor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_seq_processor.c -o obj/src/gth/bssm_seq_processor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_seq_processor.c -o obj/src/gth/bssm_seq_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_seq_processor.o
[compile bssm_train_stream.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_train_stream.c -o obj/src/gth/bssm_train_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_train_stream.c -o obj/src/gth/bssm_train_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_train_stream.o
[compile bssm_train_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_train_visitor.c -o obj/src/gth/bssm_train_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_train_visitor.c -o obj/src/gth/bssm_train_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_train_visitor.o
[compile call_info.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/call_info.c -o obj/src/gth/call_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/call_info.c -o obj/src/gth/call_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/call_info.o
[compile chain_collection.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/chain_collection.c -o obj/src/gth/chain_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/chain_collection.c -o obj/src/gth/chain_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/chain_collection.o
[compile chaining.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/chaining.c -o obj/src/gth/chaining.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/chaining.c -o obj/src/gth/chaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/chaining.o
[compile compute_scores.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/compute_scores.c -o obj/src/gth/compute_scores.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/compute_scores.c -o obj/src/gth/compute_scores.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/compute_scores.o
[compile desc_cache.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/desc_cache.c -o obj/src/gth/desc_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/desc_cache.c -o obj/src/gth/desc_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/desc_cache.o
[compile dp_options_core.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/dp_options_core.c -o obj/src/gth/dp_options_core.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/dp_options_core.c -o obj/src/gth/dp_options_core.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/dp_options_core.o
[compile dp_options_est.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/dp_options_est.c -o obj/src/gth/dp_options_est.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/dp_options_est.c -o obj/src/gth/dp_options_est.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/dp_options_est.o
[compile dp_options_postpro.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/dp_options_postpro.c -o obj/src/gth/dp_options_postpro.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/dp_options_postpro.c -o obj/src/gth/dp_options_postpro.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/dp_options_postpro.o
[compile dp_param.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/dp_param.c -o obj/src/gth/dp_param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/dp_param.c -o obj/src/gth/dp_param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/dp_param.o
[compile dp_scores_protein.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/dp_scores_protein.c -o obj/src/gth/dp_scores_protein.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/dp_scores_protein.c -o obj/src/gth/dp_scores_protein.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/dp_scores_protein.o
[compile editoperation.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/editoperation.c -o obj/src/gth/editoperation.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/editoperation.c -o obj/src/gth/editoperation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/editoperation.o
[compile gff3_pgl_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gff3_pgl_visitor.c -o obj/src/gth/gff3_pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gff3_pgl_visitor.c -o obj/src/gth/gff3_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gff3_pgl_visitor.o
[compile gff3_sa_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gff3_sa_visitor.c -o obj/src/gth/gff3_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gff3_sa_visitor.c -o obj/src/gth/gff3_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gff3_sa_visitor.o
[compile gt_gth.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gth.c -o obj/src/gth/gt_gth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gth.c -o obj/src/gth/gt_gth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gth.o
[compile gt_gthbssmbuild.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthbssmbuild.c -o obj/src/gth/gt_gthbssmbuild.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthbssmbuild.c -o obj/src/gth/gt_gthbssmbuild.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthbssmbuild.o
[compile gt_gthbssmfileinfo.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthbssmfileinfo.c -o obj/src/gth/gt_gthbssmfileinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthbssmfileinfo.c -o obj/src/gth/gt_gthbssmfileinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthbssmfileinfo.o
[compile gt_gthbssmprint.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthbssmprint.c -o obj/src/gth/gt_gthbssmprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthbssmprint.c -o obj/src/gth/gt_gthbssmprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthbssmprint.o
[compile gt_gthbssmrmsd.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthbssmrmsd.c -o obj/src/gth/gt_gthbssmrmsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthbssmrmsd.c -o obj/src/gth/gt_gthbssmrmsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthbssmrmsd.o
[compile gt_gthbssmtrain.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthbssmtrain.c -o obj/src/gth/gt_gthbssmtrain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthbssmtrain.c -o obj/src/gth/gt_gthbssmtrain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthbssmtrain.o
[compile gt_gthconsensus.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthconsensus.c -o obj/src/gth/gt_gthconsensus.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthconsensus.c -o obj/src/gth/gt_gthconsensus.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthconsensus.o
[compile gt_gthfilestat.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthfilestat.c -o obj/src/gth/gt_gthfilestat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthfilestat.c -o obj/src/gth/gt_gthfilestat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthfilestat.o
[compile gt_gthmkbssmfiles.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthmkbssmfiles.c -o obj/src/gth/gt_gthmkbssmfiles.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthmkbssmfiles.c -o obj/src/gth/gt_gthmkbssmfiles.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthmkbssmfiles.o
[compile gt_gthsplit.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthsplit.c -o obj/src/gth/gt_gthsplit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthsplit.c -o obj/src/gth/gt_gthsplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthsplit.o
[compile gthalignment.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthalignment.c -o obj/src/gth/gthalignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthalignment.c -o obj/src/gth/gthalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthalignment.o
[compile gthchain.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthchain.c -o obj/src/gth/gthchain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthchain.c -o obj/src/gth/gthchain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthchain.o
[compile gthcluster.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthcluster.c -o obj/src/gth/gthcluster.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthcluster.c -o obj/src/gth/gthcluster.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthcluster.o
[compile gthcutoffsminimal.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthcutoffsminimal.c -o obj/src/gth/gthcutoffsminimal.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthcutoffsminimal.c -o obj/src/gth/gthcutoffsminimal.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthcutoffsminimal.o
[compile gthcutoffsrelaxed.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthcutoffsrelaxed.c -o obj/src/gth/gthcutoffsrelaxed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthcutoffsrelaxed.c -o obj/src/gth/gthcutoffsrelaxed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthcutoffsrelaxed.o
[compile gthcutoffsstrict.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthcutoffsstrict.c -o obj/src/gth/gthcutoffsstrict.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthcutoffsstrict.c -o obj/src/gth/gthcutoffsstrict.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthcutoffsstrict.o
[compile gthmatch.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthmatch.c -o obj/src/gth/gthmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthmatch.c -o obj/src/gth/gthmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthmatch.o
[compile gthorf.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthorf.c -o obj/src/gth/gthorf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthorf.c -o obj/src/gth/gthorf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthorf.o
[compile gthoutput.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthoutput.c -o obj/src/gth/gthoutput.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthoutput.c -o obj/src/gth/gthoutput.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthoutput.o
[compile gthsadistri.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthsadistri.c -o obj/src/gth/gthsadistri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthsadistri.c -o obj/src/gth/gthsadistri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthsadistri.o
[compile gthsortags.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthsortags.c -o obj/src/gth/gthsortags.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthsortags.c -o obj/src/gth/gthsortags.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthsortags.o
[compile gthsplicesitescr.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthsplicesitescr.c -o obj/src/gth/gthsplicesitescr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthsplicesitescr.c -o obj/src/gth/gthsplicesitescr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthsplicesitescr.o
[compile gthtrans.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthtrans.c -o obj/src/gth/gthtrans.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthtrans.c -o obj/src/gth/gthtrans.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthtrans.o
[compile gthtravalign.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthtravalign.c -o obj/src/gth/gthtravalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthtravalign.c -o obj/src/gth/gthtravalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthtravalign.o
[compile gthverbosefunc.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthverbosefunc.c -o obj/src/gth/gthverbosefunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthverbosefunc.c -o obj/src/gth/gthverbosefunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthverbosefunc.o
[compile gthverbosefuncvm.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthverbosefuncvm.c -o obj/src/gth/gthverbosefuncvm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthverbosefuncvm.c -o obj/src/gth/gthverbosefuncvm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthverbosefuncvm.o
[compile gthxml.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthxml.c -o obj/src/gth/gthxml.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthxml.c -o obj/src/gth/gthxml.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthxml.o
[compile indent.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/indent.c -o obj/src/gth/indent.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/indent.c -o obj/src/gth/indent.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/indent.o
[compile input.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/input.c -o obj/src/gth/input.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/input.c -o obj/src/gth/input.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/input.o
[compile intermediate.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/intermediate.c -o obj/src/gth/intermediate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/intermediate.c -o obj/src/gth/intermediate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/intermediate.o
[compile md5_cache.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/md5_cache.c -o obj/src/gth/md5_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/md5_cache.c -o obj/src/gth/md5_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/md5_cache.o
[compile parse_options.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/parse_options.c -o obj/src/gth/parse_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/parse_options.c -o obj/src/gth/parse_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/parse_options.o
[compile path_matrix.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/path_matrix.c -o obj/src/gth/path_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/path_matrix.c -o obj/src/gth/path_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/path_matrix.o
[compile path_walker.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/path_walker.c -o obj/src/gth/path_walker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/path_walker.c -o obj/src/gth/path_walker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/path_walker.o
[compile pgl.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/pgl.c -o obj/src/gth/pgl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/pgl.c -o obj/src/gth/pgl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/pgl.o
[compile pgl_collection.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/pgl_collection.c -o obj/src/gth/pgl_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/pgl_collection.c -o obj/src/gth/pgl_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/pgl_collection.o
[compile pgl_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/pgl_visitor.c -o obj/src/gth/pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/pgl_visitor.c -o obj/src/gth/pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/pgl_visitor.o
[compile proc_sa_collection.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/proc_sa_collection.c -o obj/src/gth/proc_sa_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/proc_sa_collection.c -o obj/src/gth/proc_sa_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/proc_sa_collection.o
[compile region_factory.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/region_factory.c -o obj/src/gth/region_factory.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/region_factory.c -o obj/src/gth/region_factory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/region_factory.o
[compile run_header.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/run_header.c -o obj/src/gth/run_header.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/run_header.c -o obj/src/gth/run_header.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/run_header.o
[compile sa.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/sa.c -o obj/src/gth/sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/sa.c -o obj/src/gth/sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/sa.o
[compile sa_cmp.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/sa_cmp.c -o obj/src/gth/sa_cmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/sa_cmp.c -o obj/src/gth/sa_cmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/sa_cmp.o
[compile sa_collection.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/sa_collection.c -o obj/src/gth/sa_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/sa_collection.c -o obj/src/gth/sa_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/sa_collection.o
[compile sa_filter.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/sa_filter.c -o obj/src/gth/sa_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/sa_filter.c -o obj/src/gth/sa_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/sa_filter.o
[compile sa_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/sa_visitor.c -o obj/src/gth/sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/sa_visitor.c -o obj/src/gth/sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/sa_visitor.o
[compile seq_con.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/seq_con.c -o obj/src/gth/seq_con.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/seq_con.c -o obj/src/gth/seq_con.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/seq_con.o
[compile similarity_filter.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/similarity_filter.c -o obj/src/gth/similarity_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/similarity_filter.c -o obj/src/gth/similarity_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/similarity_filter.o
[compile splice_site_model.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/splice_site_model.c -o obj/src/gth/splice_site_model.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/splice_site_model.c -o obj/src/gth/splice_site_model.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/splice_site_model.o
[compile spliced_seq.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/spliced_seq.c -o obj/src/gth/spliced_seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/spliced_seq.c -o obj/src/gth/spliced_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/spliced_seq.o
[compile stat.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/stat.c -o obj/src/gth/stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/stat.c -o obj/src/gth/stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/stat.o
[compile time.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/time.c -o obj/src/gth/time.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/time.c -o obj/src/gth/time.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/time.o
[compile txt_pgl_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/txt_pgl_visitor.c -o obj/src/gth/txt_pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/txt_pgl_visitor.c -o obj/src/gth/txt_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/txt_pgl_visitor.o
[compile txt_sa_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/txt_sa_visitor.c -o obj/src/gth/txt_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/txt_sa_visitor.c -o obj/src/gth/txt_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/txt_sa_visitor.o
[compile xml_final_sa_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/xml_final_sa_visitor.c -o obj/src/gth/xml_final_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/xml_final_sa_visitor.c -o obj/src/gth/xml_final_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/xml_final_sa_visitor.o
[compile xml_inter_sa_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/xml_inter_sa_visitor.c -o obj/src/gth/xml_inter_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/xml_inter_sa_visitor.c -o obj/src/gth/xml_inter_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/xml_inter_sa_visitor.o
[compile xml_pgl_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/xml_pgl_visitor.c -o obj/src/gth/xml_pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/xml_pgl_visitor.c -o obj/src/gth/xml_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/xml_pgl_visitor.o
[link libgenomethreader.a]
ar: `u' modifier ignored since `D' is the default (see `U')
ar: creating lib/libgenomethreader.a
[compile gth.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth.c -o obj/src/gth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth.c -o obj/src/gth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth.o
[link gth]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gth.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gth
[compile gthconsensus.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthconsensus.c -o obj/src/gthconsensus.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthconsensus.c -o obj/src/gthconsensus.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthconsensus.o
[link gthconsensus]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthconsensus.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthconsensus
[compile gthbssmfileinfo.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthbssmfileinfo.c -o obj/src/gthbssmfileinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthbssmfileinfo.c -o obj/src/gthbssmfileinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthbssmfileinfo.o
[link gthbssmfileinfo]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthbssmfileinfo.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthbssmfileinfo
[compile gthbssmbuild.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthbssmbuild.c -o obj/src/gthbssmbuild.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthbssmbuild.c -o obj/src/gthbssmbuild.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthbssmbuild.o
[link gthbssmbuild]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthbssmbuild.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthbssmbuild
[compile gthbssmprint.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthbssmprint.c -o obj/src/gthbssmprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthbssmprint.c -o obj/src/gthbssmprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthbssmprint.o
[link gthbssmprint]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthbssmprint.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthbssmprint
[compile gthbssmrmsd.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthbssmrmsd.c -o obj/src/gthbssmrmsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthbssmrmsd.c -o obj/src/gthbssmrmsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthbssmrmsd.o
[link gthbssmrmsd]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthbssmrmsd.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthbssmrmsd
[compile gthbssmtrain.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthbssmtrain.c -o obj/src/gthbssmtrain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthbssmtrain.c -o obj/src/gthbssmtrain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthbssmtrain.o
[link gthbssmtrain]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthbssmtrain.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthbssmtrain
[compile gthfilestat.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthfilestat.c -o obj/src/gthfilestat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthfilestat.c -o obj/src/gthfilestat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthfilestat.o
[link gthfilestat]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthfilestat.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthfilestat
[compile gthmkbssmfiles.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthmkbssmfiles.c -o obj/src/gthmkbssmfiles.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthmkbssmfiles.c -o obj/src/gthmkbssmfiles.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthmkbssmfiles.o
[link gthmkbssmfiles]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthmkbssmfiles.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthmkbssmfiles
[compile gthsplit.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthsplit.c -o obj/src/gthsplit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthsplit.c -o obj/src/gthsplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthsplit.o
[link gthsplit]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthsplit.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthsplit
[compile gthunit.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthunit.c -o obj/src/gthunit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthunit.c -o obj/src/gthunit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthunit.o
[link gthunit]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthunit.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthunit
[compile gthgetseq.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthgetseq.c -o obj/src/gthgetseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthgetseq.c -o obj/src/gthgetseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthgetseq.o
[link gthgetseq]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthgetseq.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthgetseq
[compile align_dna.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/align_dna.c -o obj/src/align_dna.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/align_dna.c -o obj/src/align_dna.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj  -U_FORTIFY_SOURCE -I/<<PKGBUILDDIR>>/../vstree/src/include -I/<<PKGBUILDDIR>>/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/align_dna.o
[link align_dna]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/align_dna.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/align_dna
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make licensemanager=no opt=yes 64bit=no train
make[2]: Entering directory '/<<PKGBUILDDIR>>'
[train arabidopsis.bssm]
[train rice.bssm]
[train maize.bssm]
[train medicago.bssm]
[write old BSSMs]
[copy gthdata stuff to bin]
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make licensemanager=no 64bit=no  test
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cd testsuite && env -i GTH_MEM_BOOKKEEPING=on MAKE=make PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" \
  BSSMDIR=/<<PKGBUILDDIR>>/bin/bssm GTHDATADIR=/<<PKGBUILDDIR>>/gthdata/gth \
          CCACHE_DISABLE=yes HOME=/sbuild-nonexistent GTHTESTDATADIR= \
          ruby -I. testsuite.rb \
          -testdata /<<PKGBUILDDIR>>/testdata -bin /<<PKGBUILDDIR>>/bin -cur /<<PKGBUILDDIR>> \
          -gtruby /<<PKGBUILDDIR>>/gtruby 
  1: gth                                                         : ok
  2: gth -help                                                   : ok
  3: gth -help+                                                  : ok
  4: gth -version                                                : ok
  5: gth regression test (assertion in gthsafilter)              : ok
  6: gth regression test (-gff3out -intermediate)                : ok
  7: gth regression test (-gff3out -intermediate -fastdp)        : ok
  8: gth regression test (-gff3out -skipalignmentout)            : ok
  9: gth regression test (-gff3out -skipalignmentout -fastdp)    : ok
 10: gth regression test (-gff3out -intermediate -o)             : ok
 11: gth regression test (-gff3out -skipalignmentout -o)         : ok
 12: gthconsensus regression test (-gff3out -intermediate)       : ok
 13: gthconsensus regression test (-gff3out -skipalignmentout)   : ok
 14: gthconsensus regression test (-gff3out -intermediate -o)    : ok
 15: gthconsensus regression test (-gff3out -skipalignmentout -o): ok
 16: gth regression test (-exondistri)                           : ok
 17: gth regression test (-introndistri)                         : ok
 18: gth regression test (-refseqcovdistri)                      : ok
 19: gth regression test (all distributions)                     : ok
 20: gth regression test (-skipindexcheck)                       : ok
 21: gth regression test (index reconstruction)                  : ok
 22: gth regression test (-createindicesonly & -noautoindex)     : ok
 23: gth regression test (coverage assertion)                    : ok
 24: gth -gff3out -intermediate (long intron files)              : ok
 25: gth -gff3out -skipalignmentout (long intron files)          : ok
 26: gth -gff3out -frompos (correct positions in sequence region): ok
 27: gth -gff3out -intermediate (correct reverse positions)      : ok
 28: gth arabidopsis                                             : ok
 29: gth illegal character in protein file                       : ok
 30: align_dna                                                   : ok
 31: gth -gff3descranges (single exon)                           : ok
 32: gthconsensus -help                                          : ok
 33: gthconsensus -help+                                         : ok
 34: gthconsensus empty_file                                     : ok
 35: gthconsensus empty_file.gz                                  : ok
 36: gthconsensus empty_file.bz2                                 : ok
 37: gthbssmfileinfo (arabidopsis)                               : ok
 38: gthbssmfileinfo (human)                                     : ok
 39: gthbssmprint (arabidopsis)                                  : ok
 40: gthbssmprint (human)                                        : ok
 41: gthbssmrmsd (arabidopsis)                                   : ok
 42: gthbssmtrain (examples from manual)                         : ok
 43: gthbssmtrain (file, no introns)                             : ok
 44: gthbssmtrain (file, introns)                                : ok
 45: gthbssmtrain (stdin, no introns)                            : ok
 46: gthbssmtrain (stdin, introns)                               : ok
 47: gthbssmtrain (short intron)                                 : ok
 48: gthunit                                                     : ok
 49: fastdp 01                                                   : ok
 50: fastdp (U89959)                                             : ok
 51: fastdp (U89959, introncutout)                               : ok
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mv bin/bssm debian/bssm
mv bin/gthdata debian/gthdata
dh_auto_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/man
asciidoctor -a docdate='' -b manpage /<<PKGBUILDDIR>>/debian/man_src/*.adoc
cp /<<PKGBUILDDIR>>/debian/man_src/*.? /<<PKGBUILDDIR>>/debian/man
dh_installman --
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb -a
   debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "libvmatch-dev:Version=2.3.1+dfsg-9" >> debian/genomethreader.substvars
dh_gencontrol
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'genomethreader-dbgsym' in '../genomethreader-dbgsym_1.7.3+dfsg-10_armhf.deb'.
dpkg-deb: building package 'genomethreader' in '../genomethreader_1.7.3+dfsg-10_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../genomethreader_1.7.3+dfsg-10_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../genomethreader_1.7.3+dfsg-10_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-02-27T05:41:41Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


genomethreader_1.7.3+dfsg-10_armhf.changes:
-------------------------------------------

Format: 1.8
Date: Sat, 24 Feb 2024 20:05:30 +0100
Source: genomethreader
Binary: genomethreader genomethreader-dbgsym
Architecture: armhf
Version: 1.7.3+dfsg-10
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 genomethreader - software tool to compute gene structure predictions
Closes: 1064585
Changes:
 genomethreader (1.7.3+dfsg-10) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Aurelien Jarno ]
   * Make sure package gets accepted even if binNMUed in between
     Closes: #1064585
 .
   [ Andreas Tille ]
   Use secure URI in Homepage field.
Checksums-Sha1:
 0cb6b7bb623cdcc40e17a3be15952d12d0a61aa4 1580264 genomethreader-dbgsym_1.7.3+dfsg-10_armhf.deb
 105ab5c8a8d80291512f9fc8ba51e09013748686 7318 genomethreader_1.7.3+dfsg-10_armhf.buildinfo
 f6428cb21738cfce7c055ebd3e0e436fefa5c109 1879524 genomethreader_1.7.3+dfsg-10_armhf.deb
Checksums-Sha256:
 eeaa52dd223082a6e3939523bf09cf119a9536f60584e0c437125c285ea287b9 1580264 genomethreader-dbgsym_1.7.3+dfsg-10_armhf.deb
 87600e81756f0ffb8e52598de367df0b9146806a620790b4fa26d0751b86e208 7318 genomethreader_1.7.3+dfsg-10_armhf.buildinfo
 042f1de8842291c8810a0ba8122ca144ac816a01b0b5fece06e649ff5b825dc5 1879524 genomethreader_1.7.3+dfsg-10_armhf.deb
Files:
 b32a93d2eacc017c5e2a313abd19d6bb 1580264 debug optional genomethreader-dbgsym_1.7.3+dfsg-10_armhf.deb
 cc1abd00ff4262c006c8f15359699596 7318 science optional genomethreader_1.7.3+dfsg-10_armhf.buildinfo
 191436aafc5fc6d26484189e75e85936 1879524 science optional genomethreader_1.7.3+dfsg-10_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: genomethreader
Binary: genomethreader genomethreader-dbgsym
Architecture: armhf
Version: 1.7.3+dfsg-10
Checksums-Md5:
 b32a93d2eacc017c5e2a313abd19d6bb 1580264 genomethreader-dbgsym_1.7.3+dfsg-10_armhf.deb
 191436aafc5fc6d26484189e75e85936 1879524 genomethreader_1.7.3+dfsg-10_armhf.deb
Checksums-Sha1:
 0cb6b7bb623cdcc40e17a3be15952d12d0a61aa4 1580264 genomethreader-dbgsym_1.7.3+dfsg-10_armhf.deb
 f6428cb21738cfce7c055ebd3e0e436fefa5c109 1879524 genomethreader_1.7.3+dfsg-10_armhf.deb
Checksums-Sha256:
 eeaa52dd223082a6e3939523bf09cf119a9536f60584e0c437125c285ea287b9 1580264 genomethreader-dbgsym_1.7.3+dfsg-10_armhf.deb
 042f1de8842291c8810a0ba8122ca144ac816a01b0b5fece06e649ff5b825dc5 1879524 genomethreader_1.7.3+dfsg-10_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Tue, 27 Feb 2024 05:41:40 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
 asciidoctor (= 2.0.20-1),
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-14),
 autotools-dev (= 20220109.1),
 base-files (= 13+rpi1),
 base-passwd (= 3.6.3),
 bash (= 5.2.21-2),
 binutils (= 2.41-6+rpi1),
 binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
 binutils-common (= 2.41-6+rpi1),
 bsdextrautils (= 2.39.3-6),
 bsdutils (= 1:2.39.3-6),
 build-essential (= 12.10),
 bzip2 (= 1.0.8-5+b2),
 ca-certificates (= 20240203),
 coreutils (= 9.4-3),
 cpp (= 4:13.2.0-1+rpi1),
 cpp-12 (= 12.3.0-14+rpi1),
 cpp-13 (= 13.2.0-9+rpi1),
 dash (= 0.5.12-6),
 debconf (= 1.5.86),
 debhelper (= 13.14.1),
 debianutils (= 5.16),
 dh-autoreconf (= 20),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.4+rpi1),
 dpkg-dev (= 1.22.4+rpi1),
 dwz (= 0.15-1),
 file (= 1:5.45-2),
 findutils (= 4.9.0-5),
 fontconfig (= 2.15.0-1),
 fontconfig-config (= 2.15.0-1),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 g++ (= 4:13.2.0-1+rpi1),
 g++-13 (= 13.2.0-9+rpi1),
 gcc (= 4:13.2.0-1+rpi1),
 gcc-12 (= 12.3.0-14+rpi1),
 gcc-12-base (= 12.3.0-14+rpi1),
 gcc-13 (= 13.2.0-9+rpi1),
 gcc-13-base (= 13.2.0-9+rpi1),
 genometools (= 1.6.5+ds-2),
 genometools-common (= 1.6.5+ds-2),
 gettext (= 0.21-14),
 gettext-base (= 0.21-14),
 grep (= 3.11-4),
 groff-base (= 1.23.0-3),
 gzip (= 1.12-1),
 hostname (= 3.23+nmu2),
 init-system-helpers (= 1.66),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-1),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 13.2.0-9+rpi1),
 libatomic1 (= 13.2.0-9+rpi1),
 libattr1 (= 1:2.5.2-1),
 libaudit-common (= 1:3.1.2-2),
 libaudit1 (= 1:3.1.2-2),
 libbinutils (= 2.41-6+rpi1),
 libblkid1 (= 2.39.3-6),
 libbrotli1 (= 1.1.0-2),
 libbsd0 (= 0.11.8-1),
 libbz2-1.0 (= 1.0.8-5+b2),
 libbz2-dev (= 1.0.8-5+b2),
 libc-bin (= 2.37-15~deb13u1+rpi1),
 libc-dev-bin (= 2.37-15~deb13u1+rpi1),
 libc6 (= 2.37-15~deb13u1+rpi1),
 libc6-dev (= 2.37-15~deb13u1+rpi1),
 libcairo2 (= 1.18.0-1),
 libcap-ng0 (= 0.8.4-2),
 libcap2 (= 1:2.66-5),
 libcc1-0 (= 13.2.0-9+rpi1),
 libcom-err2 (= 1.47.0-2),
 libcrypt-dev (= 1:4.4.36-4),
 libcrypt1 (= 1:4.4.36-4),
 libctf-nobfd0 (= 2.41-6+rpi1),
 libctf0 (= 2.41-6+rpi1),
 libdatrie1 (= 0.2.13-3),
 libdb5.3 (= 5.3.28+dfsg2-4),
 libdebconfclient0 (= 0.271),
 libdebhelper-perl (= 13.14.1),
 libdpkg-perl (= 1.22.4+rpi1),
 libedit2 (= 3.1-20230828-1),
 libelf1 (= 0.188-2.1+rpi1),
 libexpat1 (= 2.5.0-2),
 libexpat1-dev (= 2.5.0-2),
 libffi8 (= 3.4.4-2),
 libfile-find-rule-perl (= 0.34-3),
 libfile-stripnondeterminism-perl (= 1.13.1-1),
 libfontconfig1 (= 2.15.0-1),
 libfreetype6 (= 2.13.2+dfsg-1),
 libfribidi0 (= 1.0.13-3),
 libgcc-12-dev (= 12.3.0-14+rpi1),
 libgcc-13-dev (= 13.2.0-9+rpi1),
 libgcc-s1 (= 13.2.0-9+rpi1),
 libgcrypt20 (= 1.10.3-2),
 libgdbm-compat4 (= 1.23-5),
 libgdbm6 (= 1.23-5),
 libgenometools0 (= 1.6.5+ds-2),
 libgenometools0-dev (= 1.6.5+ds-2),
 libglib2.0-0 (= 2.78.4-1),
 libgmp10 (= 2:6.3.0+dfsg-2),
 libgomp1 (= 13.2.0-9+rpi1),
 libgpg-error0 (= 1.47-3),
 libgraphite2-3 (= 1.3.14-2),
 libgssapi-krb5-2 (= 1.20.1-5),
 libharfbuzz0b (= 8.3.0-2),
 libicu72 (= 72.1-4),
 libisl23 (= 0.26-3),
 libjansson4 (= 2.14-2),
 libk5crypto3 (= 1.20.1-5),
 libkeyutils1 (= 1.6.3-3),
 libkrb5-3 (= 1.20.1-5),
 libkrb5support0 (= 1.20.1-5),
 liblua5.1-0 (= 5.1.5-9),
 liblua5.1-0-dev (= 5.1.5-9),
 liblz4-1 (= 1.9.4-1+rpi1+b1),
 liblzma5 (= 5.4.5-0.3),
 libmagic-mgc (= 1:5.45-2),
 libmagic1 (= 1:5.45-2),
 libmd0 (= 1.1.0-2),
 libmount1 (= 2.39.3-6),
 libmpc3 (= 1.3.1-1),
 libmpfr6 (= 4.2.1-1),
 libncurses-dev (= 6.4+20240113-1),
 libncurses6 (= 6.4+20240113-1),
 libncursesw6 (= 6.4+20240113-1),
 libnsl-dev (= 1.3.0-3),
 libnsl2 (= 1.3.0-3),
 libnumber-compare-perl (= 0.03-3),
 libpam-modules (= 1.5.2-9.1),
 libpam-modules-bin (= 1.5.2-9.1),
 libpam-runtime (= 1.5.2-9.1),
 libpam0g (= 1.5.2-9.1),
 libpango-1.0-0 (= 1.51.0+ds-4),
 libpangocairo-1.0-0 (= 1.51.0+ds-4),
 libpangoft2-1.0-0 (= 1.51.0+ds-4),
 libpcre2-8-0 (= 10.42-4),
 libperl5.38 (= 5.38.2-3),
 libpipeline1 (= 1.5.7-1),
 libpixman-1-0 (= 0.42.2-1),
 libpng16-16 (= 1.6.42-1),
 libreadline-dev (= 8.2-3),
 libreadline8 (= 8.2-3),
 libruby (= 1:3.1),
 libruby3.1 (= 3.1.2-8),
 libseccomp2 (= 2.5.5-1+rpi1),
 libselinux1 (= 3.5-2),
 libsframe1 (= 2.41-6+rpi1),
 libsmartcols1 (= 2.39.3-6),
 libsqlite3-0 (= 3.45.1-1),
 libssl3 (= 3.1.5-1),
 libstdc++-13-dev (= 13.2.0-9+rpi1),
 libstdc++6 (= 13.2.0-9+rpi1),
 libsub-override-perl (= 0.10-1),
 libsystemd0 (= 255.3-1+rpi1),
 libtext-glob-perl (= 0.11-3),
 libthai-data (= 0.1.29-2),
 libthai0 (= 0.1.29-2),
 libtinfo6 (= 6.4+20240113-1),
 libtirpc-common (= 1.3.4+ds-1),
 libtirpc-dev (= 1.3.4+ds-1),
 libtirpc3 (= 1.3.4+ds-1),
 libtool (= 2.4.7-7),
 libtre-dev (= 0.8.0-7),
 libtre5 (= 0.8.0-7),
 libubsan1 (= 13.2.0-9+rpi1),
 libuchardet0 (= 0.0.8-1),
 libudev1 (= 255.3-1+rpi1),
 libunistring5 (= 1.1-2),
 libuuid1 (= 2.39.3-6),
 libvmatch-dev (= 2.3.1+dfsg-9),
 libx11-6 (= 2:1.8.7-1),
 libx11-data (= 2:1.8.7-1),
 libxau6 (= 1:1.0.9-1),
 libxcb-render0 (= 1.15-1),
 libxcb-shm0 (= 1.15-1),
 libxcb1 (= 1.15-1),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1),
 libxml2 (= 2.9.14+dfsg-1.3),
 libxrender1 (= 1:0.9.10-1.1),
 libyaml-0-2 (= 0.2.5-1),
 libzstd1 (= 1.5.5+dfsg2-2),
 linux-libc-dev (= 6.5.6-1+rpi1+b1),
 login (= 1:4.13+dfsg1-4),
 lua-filesystem (= 1.8.0-3),
 lua-lpeg (= 1.0.2-2),
 lua-md5 (= 1.2+git+1+8d87fee-2),
 m4 (= 1.4.19-4),
 make (= 4.3-4.1),
 man-db (= 2.12.0-3),
 mawk (= 1.3.4.20240123-1),
 ncurses-base (= 6.4+20240113-1),
 ncurses-bin (= 6.4+20240113-1),
 openssl (= 3.1.5-1),
 patch (= 2.7.6-7),
 perl (= 5.38.2-3),
 perl-base (= 5.38.2-3),
 perl-modules-5.38 (= 5.38.2-3),
 po-debconf (= 1.0.21+nmu1),
 rake (= 13.0.6-3),
 readline-common (= 8.2-3),
 rpcsvc-proto (= 1.4.3-1),
 ruby (= 1:3.1),
 ruby-asciidoctor (= 2.0.20-1),
 ruby-net-telnet (= 0.2.0-1),
 ruby-rubygems (= 3.4.20-1),
 ruby-sdbm (= 1.0.0-5+rpi1),
 ruby-webrick (= 1.8.1-1),
 ruby-xmlrpc (= 0.3.2-2),
 ruby3.1 (= 3.1.2-8),
 rubygems-integration (= 1.18),
 sed (= 4.9-2),
 sensible-utils (= 0.0.22),
 sysvinit-utils (= 3.08-6),
 tar (= 1.35+dfsg-3),
 usrmerge (= 39),
 util-linux (= 2.39.3-6),
 xz-utils (= 5.4.5-0.3),
 zlib1g (= 1:1.3.dfsg-3),
 zlib1g-dev (= 1:1.3.dfsg-3)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1708801530"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


genomethreader-dbgsym_1.7.3+dfsg-10_armhf.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 1580264 bytes: control archive=1152 bytes.
     862 bytes,    12 lines      control
    1366 bytes,    13 lines      md5sums
 Package: genomethreader-dbgsym
 Source: genomethreader
 Version: 1.7.3+dfsg-10
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2179
 Depends: genomethreader (= 1.7.3+dfsg-10)
 Section: debug
 Priority: optional
 Description: debug symbols for genomethreader
 Build-Ids: 3bb12ea9c8cb76cd0331c92c8073efc4cabe2fda 5d5f5a1e40d4c6022cfe51eeeae7c0b41b91f0a9 647f777e128fca9da88996dba8363cc699298936 6bd9e6afcec7e6035fbcc3fbe16356ee2bf2939d 6daf57952a13cca2dc62947d5cdd26dfc2b84489 7b271b170db2846d63adf0f08ee476b9baa63991 7e2afb841329cefade7e42dc91ae516d4fe87626 95fd5efb7eed3998603263e9d0570b5c5563167c b1e33daff2f7202543f8590c70c1d670aea0a8de bb908560410aec0a8187624dd3025c6bdf06139a ea5f703eca68aa0f114d3981f0df0d54d23d6df7 ff329b79914bc0d30a2fbb617e2468639f2d4ada

drwxr-xr-x root/root         0 2024-02-24 19:05 ./
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/3b/
-rw-r--r-- root/root     25556 2024-02-24 19:05 ./usr/lib/debug/.build-id/3b/b12ea9c8cb76cd0331c92c8073efc4cabe2fda.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/5d/
-rw-r--r-- root/root     26504 2024-02-24 19:05 ./usr/lib/debug/.build-id/5d/5f5a1e40d4c6022cfe51eeeae7c0b41b91f0a9.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/64/
-rw-r--r-- root/root    258984 2024-02-24 19:05 ./usr/lib/debug/.build-id/64/7f777e128fca9da88996dba8363cc699298936.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/6b/
-rw-r--r-- root/root     28592 2024-02-24 19:05 ./usr/lib/debug/.build-id/6b/d9e6afcec7e6035fbcc3fbe16356ee2bf2939d.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/6d/
-rw-r--r-- root/root     27732 2024-02-24 19:05 ./usr/lib/debug/.build-id/6d/af57952a13cca2dc62947d5cdd26dfc2b84489.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/7b/
-rw-r--r-- root/root    264136 2024-02-24 19:05 ./usr/lib/debug/.build-id/7b/271b170db2846d63adf0f08ee476b9baa63991.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/7e/
-rw-r--r-- root/root    321196 2024-02-24 19:05 ./usr/lib/debug/.build-id/7e/2afb841329cefade7e42dc91ae516d4fe87626.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/95/
-rw-r--r-- root/root    483272 2024-02-24 19:05 ./usr/lib/debug/.build-id/95/fd5efb7eed3998603263e9d0570b5c5563167c.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/b1/
-rw-r--r-- root/root    361824 2024-02-24 19:05 ./usr/lib/debug/.build-id/b1/e33daff2f7202543f8590c70c1d670aea0a8de.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/bb/
-rw-r--r-- root/root    278812 2024-02-24 19:05 ./usr/lib/debug/.build-id/bb/908560410aec0a8187624dd3025c6bdf06139a.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/ea/
-rw-r--r-- root/root     52692 2024-02-24 19:05 ./usr/lib/debug/.build-id/ea/5f703eca68aa0f114d3981f0df0d54d23d6df7.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root     26500 2024-02-24 19:05 ./usr/lib/debug/.build-id/ff/329b79914bc0d30a2fbb617e2468639f2d4ada.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root     47144 2024-02-24 19:05 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/genomethreader.debug
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/share/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-02-24 19:05 ./usr/share/doc/genomethreader-dbgsym -> genomethreader


genomethreader_1.7.3+dfsg-10_armhf.deb
--------------------------------------

 new Debian package, version 2.0.
 size 1879524 bytes: control archive=1992 bytes.
     885 bytes,    17 lines      control
    3091 bytes,    45 lines      md5sums
 Package: genomethreader
 Version: 1.7.3+dfsg-10
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 21763
 Depends: libc6 (>= 2.34), libexpat1 (>= 2.0.1), libgenometools0 (>= 1.6.5+ds), liblua5.1-0, zlib1g (>= 1:1.2.3.3)
 Built-Using: vmatch (= 2.3.1+dfsg-9)
 Section: science
 Priority: optional
 Homepage: https://genomethreader.org
 Description: software tool to compute gene structure predictions
  GenomeThreader is a software tool to compute gene structure predictions.
  The gene structure predictions are calculated using a similarity-based
  approach where additional cDNA/EST and/or protein sequences are used to
  predict gene structures via spliced alignments. GenomeThreader was motivated
  by disabling limitations in GeneSeqer, a popular gene prediction program
  which is widely used for plant genome annotation.

drwxr-xr-x root/root         0 2024-02-24 19:05 ./
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/bin/
-rwxr-xr-x root/root   2267964 2024-02-24 19:05 ./usr/bin/align_dna
-rwxr-xr-x root/root   2464604 2024-02-24 19:05 ./usr/bin/gth
-rwxr-xr-x root/root   1594996 2024-02-24 19:05 ./usr/bin/gthbssmbuild
-rwxr-xr-x root/root   1594996 2024-02-24 19:05 ./usr/bin/gthbssmfileinfo
-rwxr-xr-x root/root   1594996 2024-02-24 19:05 ./usr/bin/gthbssmprint
-rwxr-xr-x root/root   1594996 2024-02-24 19:05 ./usr/bin/gthbssmrmsd
-rwxr-xr-x root/root     50732 2024-02-24 19:05 ./usr/bin/gthbssmtrain
-rwxr-xr-x root/root   2325340 2024-02-24 19:05 ./usr/bin/gthconsensus
-rwxr-xr-x root/root    666428 2024-02-24 19:05 ./usr/bin/gthfilestat
-rwxr-xr-x root/root    654140 2024-02-24 19:05 ./usr/bin/gthgetseq
-rwxr-xr-x root/root   1594996 2024-02-24 19:05 ./usr/bin/gthmkbssmfiles
-rwxr-xr-x root/root    658236 2024-02-24 19:05 ./usr/bin/gthsplit
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/genomethreader/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/
-rw-r--r-- root/root    551095 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/arabidopsis.bssm
-rw-r--r-- root/root    367401 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/arabidopsis.old.bssm
-rw-r--r-- root/root    367401 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/aspergillus.bssm
-rw-r--r-- root/root    367401 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/chicken.bssm
-rw-r--r-- root/root    367401 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/drosophila.bssm
-rw-r--r-- root/root    367401 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/fission_yeast.bssm
-rw-r--r-- root/root    105131 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/human.bssm
-rw-r--r-- root/root    551095 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/maize.bssm
-rw-r--r-- root/root    367401 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/maize.old.bssm
-rw-r--r-- root/root    367401 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/medicago.bssm
-rw-r--r-- root/root    105131 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/mouse.bssm
-rw-r--r-- root/root    367401 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/nematode.bssm
-rw-r--r-- root/root    367401 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/rat.bssm
-rw-r--r-- root/root    551095 2024-02-24 19:05 ./usr/lib/genomethreader/bssm/rice.bssm
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/share/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/share/doc/genomethreader/
-rw-r--r-- root/root       909 2024-02-24 19:05 ./usr/share/doc/genomethreader/changelog.Debian.gz
-rw-r--r-- root/root      1993 2020-01-09 18:41 ./usr/share/doc/genomethreader/changelog.gz
-rw-r--r-- root/root      3466 2024-02-24 19:05 ./usr/share/doc/genomethreader/copyright
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/share/genomethreader/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/share/genomethreader/gthdata/
-rw-r--r-- root/root      2122 2024-02-24 19:05 ./usr/share/genomethreader/gthdata/BLOSUM62
-rw-r--r-- root/root        39 2024-02-24 19:05 ./usr/share/genomethreader/gthdata/TransDNAX
-rw-r--r-- root/root       146 2024-02-24 19:05 ./usr/share/genomethreader/gthdata/TransProt11
-rw-r--r-- root/root       290 2024-02-24 19:05 ./usr/share/genomethreader/gthdata/polyatail.dna
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/share/man/
drwxr-xr-x root/root         0 2024-02-24 19:05 ./usr/share/man/man1/
-rw-r--r-- root/root       508 2024-02-24 19:05 ./usr/share/man/man1/align_dna.1.gz
-rw-r--r-- root/root      3183 2024-02-24 19:05 ./usr/share/man/man1/gth.1.gz
-rw-r--r-- root/root       630 2024-02-24 19:05 ./usr/share/man/man1/gthbssmbuild.1.gz
-rw-r--r-- root/root       476 2024-02-24 19:05 ./usr/share/man/man1/gthbssmfileinfo.1.gz
-rw-r--r-- root/root       462 2024-02-24 19:05 ./usr/share/man/man1/gthbssmprint.1.gz
-rw-r--r-- root/root       483 2024-02-24 19:05 ./usr/share/man/man1/gthbssmrmsd.1.gz
-rw-r--r-- root/root      1235 2024-02-24 19:05 ./usr/share/man/man1/gthbssmtrain.1.gz
-rw-r--r-- root/root       944 2024-02-24 19:05 ./usr/share/man/man1/gthconsensus.1.gz
-rw-r--r-- root/root       622 2024-02-24 19:05 ./usr/share/man/man1/gthfilestat.1.gz
-rw-r--r-- root/root       728 2024-02-24 19:05 ./usr/share/man/man1/gthgetseq.1.gz
-rw-r--r-- root/root       459 2024-02-24 19:05 ./usr/share/man/man1/gthmkbssmfiles.1.gz
-rw-r--r-- root/root       729 2024-02-24 19:05 ./usr/share/man/man1/gthsplit.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 162380
Build-Time: 223
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 730
Job: genomethreader_1.7.3+dfsg-10
Machine Architecture: armhf
Package: genomethreader
Package-Time: 1004
Source-Version: 1.7.3+dfsg-10
Space: 162380
Status: successful
Version: 1.7.3+dfsg-10
--------------------------------------------------------------------------------
Finished at 2024-02-27T05:41:41Z
Build needed 00:16:44, 162380k disk space