gbrowse →
2.56+dfsg-8 →
armhf → 2020-02-18 06:31:57
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| gbrowse 2.56+dfsg-8 (armhf) Tue, 18 Feb 2020 06:02:11 +0000 |
+==============================================================================+
Package: gbrowse
Version: 2.56+dfsg-8
Source Version: 2.56+dfsg-8
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-1a923ffe-14a0-46a8-be3c-385fe379f224' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.3 MB in 53s (459 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'gbrowse' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/gbrowse.git
Please use:
git clone https://salsa.debian.org/med-team/gbrowse.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 4382 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main gbrowse 2.56+dfsg-8 (dsc) [2670 B]
Get:2 http://172.17.0.1/private bullseye-staging/main gbrowse 2.56+dfsg-8 (tar) [4356 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main gbrowse 2.56+dfsg-8 (diff) [23.5 kB]
Fetched 4382 kB in 1s (4561 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/gbrowse-ECDUg9/gbrowse-2.56+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gbrowse-ECDUg9' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-sbJxSg/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-sbJxSg/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-sbJxSg/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Packages [434 B]
Fetched 2110 B in 2s (1141 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-sbJxSg/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (40.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12214 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: bioperl, debhelper-compat (= 12), dh-apache2, dh-exec, apache2-dev, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcapture-tiny-perl, libcgi-session-perl, libgd-gd2-perl | libgd-gd2-noxpm-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, libmodule-build-perl, libcgi-pm-perl, rename
Filtered Build-Depends: bioperl, debhelper-compat (= 12), dh-apache2, dh-exec, apache2-dev, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcapture-tiny-perl, libcgi-session-perl, libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, libmodule-build-perl, libcgi-pm-perl, rename
dpkg-deb: building package 'sbuild-build-depends-gbrowse-dummy' in '/<<BUILDDIR>>/resolver-sbJxSg/apt_archive/sbuild-build-depends-gbrowse-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-gbrowse-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Sources [691 B]
Get:5 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Packages [762 B]
Fetched 2786 B in 2s (1579 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-sbJxSg/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install gbrowse build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
apache2-bin apache2-dev autoconf automake autopoint autotools-dev bioperl
bsdmainutils ca-certificates debhelper dh-autoreconf dh-exec
dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base intltool-debian libalgorithm-diff-perl
libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl
libapache-dbi-perl libapache2-mod-perl2 libapr1 libapr1-dev libaprutil1
libaprutil1-dbd-sqlite3 libaprutil1-dev libaprutil1-ldap libarchive-zip-perl
libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl
libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libbrotli1
libbsd0 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl
libclass-data-inheritable-perl libcommon-sense-perl libcroco3 libcurl4
libdata-stag-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl
libdebhelper-perl libdevel-stacktrace-perl libdevel-symdump-perl libelf1
libencode-locale-perl libexception-class-perl libexpat1 libexpat1-dev
libexporter-tiny-perl libfile-listing-perl libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgd-perl libgd3 libglib2.0-0 libgssapi-krb5-2
libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu63 libio-html-perl
libio-socket-ssl-perl libio-string-perl libjansson4 libjbig0 libjpeg62-turbo
libjs-prototype libjs-scriptaculous libjson-perl libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libldap-2.4-2 libldap2-dev liblist-moreutils-perl
liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc
libmagic1 libmodule-build-perl libnet-http-perl libnet-ssleay-perl
libnghttp2-14 libpipeline1 libpng16-16 libpq5 libpsl5 librtmp1 libsctp-dev
libsctp1 libsigsegv2 libsqlite3-0 libssh2-1 libssl1.1
libstatistics-descriptive-perl libstring-approx-perl libsub-override-perl
libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl
libtest-differences-perl libtest-exception-perl libtest-most-perl
libtest-warn-perl libtext-diff-perl libtiff5 libtimedate-perl libtinfo5
libtool libtry-tiny-perl libuchardet0 liburi-perl libvm-ec2-perl libwebp6
libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl
libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 m4
man-db openssl perl-openssl-defaults po-debconf rename sensible-utils
sqlite3 ucf uuid-dev
Suggested packages:
apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libev-perl libevent-perl libio-async-perl libpoe-perl libtask-weaken-perl
python libxml-sax-expatxs-perl libclone-perl libmldbm-perl
libnet-daemon-perl libsql-statement-perl libgd-tools krb5-doc krb5-user
libdata-dump-perl libcrypt-ssleay-perl lksctp-tools libtool-doc gfortran
| fortran95-compiler gcj-jdk libauthen-ntlm-perl m4-doc apparmor less
libmail-box-perl sqlite3-doc
Recommended packages:
bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libyaml-perl
libace-perl libxml-twig-perl libset-scalar-perl curl | wget | lynx
libalgorithm-diff-xs-perl libasync-interrupt-perl libev-perl | libevent-perl
libguard-perl libapache2-reload-perl libbsd-resource-perl libbio-scf-perl
libberkeleydb-perl libgd-svg-perl bioperl-run | libbio-perl-run-perl
libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libgraph-perl
libgraphviz-perl libhtml-tableextract-perl libpostscript-perl
libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl
libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
libxml-dom-xpath-perl libxml-parser-perl libxml-sax-writer-perl
libxml-writer-perl libcgi-fast-perl libfreezethaw-perl perl-tk
libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl
javascript-common libjson-xs-perl krb5-locales libmodule-signature-perl
libpod-readme-perl libsoftware-license-perl publicsuffix libltdl-dev
libdata-dump-perl libhtml-form-perl libmailtools-perl libxml-sax-expat-perl
libmail-sendmail-perl
The following NEW packages will be installed:
apache2-bin apache2-dev autoconf automake autopoint autotools-dev bioperl
bsdmainutils ca-certificates debhelper dh-autoreconf dh-exec
dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base intltool-debian libalgorithm-diff-perl
libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl
libapache-dbi-perl libapache2-mod-perl2 libapr1 libapr1-dev libaprutil1
libaprutil1-dbd-sqlite3 libaprutil1-dev libaprutil1-ldap libarchive-zip-perl
libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl
libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libbrotli1
libbsd0 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl
libclass-data-inheritable-perl libcommon-sense-perl libcroco3 libcurl4
libdata-stag-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl
libdebhelper-perl libdevel-stacktrace-perl libdevel-symdump-perl libelf1
libencode-locale-perl libexception-class-perl libexpat1 libexpat1-dev
libexporter-tiny-perl libfile-listing-perl libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgd-perl libgd3 libglib2.0-0 libgssapi-krb5-2
libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu63 libio-html-perl
libio-socket-ssl-perl libio-string-perl libjansson4 libjbig0 libjpeg62-turbo
libjs-prototype libjs-scriptaculous libjson-perl libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libldap2-dev liblist-moreutils-perl liblua5.2-0
liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1
libmodule-build-perl libnet-http-perl libnet-ssleay-perl libnghttp2-14
libpipeline1 libpng16-16 libpq5 libpsl5 librtmp1 libsctp-dev libsctp1
libsigsegv2 libssh2-1 libssl1.1 libstatistics-descriptive-perl
libstring-approx-perl libsub-override-perl libsub-uplevel-perl
libterm-readkey-perl libtest-deep-perl libtest-differences-perl
libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl
libtiff5 libtimedate-perl libtinfo5 libtool libtry-tiny-perl libuchardet0
liburi-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl
libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl
libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
libxml-simple-perl libxml2 libxpm4 m4 man-db openssl perl-openssl-defaults
po-debconf rename sbuild-build-depends-gbrowse-dummy sensible-utils sqlite3
ucf uuid-dev
The following packages will be upgraded:
libldap-2.4-2 libsqlite3-0
2 upgraded, 158 newly installed, 0 to remove and 17 not upgraded.
Need to get 43.3 MB of archives.
After this operation, 145 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-sbJxSg/apt_archive ./ sbuild-build-depends-gbrowse-dummy 0.invalid.0 [1044 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libldap-2.4-2 armhf 2.4.49+dfsg-1+rpi1 [202 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libsqlite3-0 armhf 3.31.1-2 [571 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libapr1 armhf 1.6.5-1 [83.3 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libaprutil1 armhf 1.6.1-4 [81.7 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libaprutil1-dbd-sqlite3 armhf 1.6.1-4 [17.3 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libaprutil1-ldap armhf 1.6.1-4 [16.3 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.67.0-2 [286 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libjansson4 armhf 2.12-1 [34.6 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf liblua5.2-0 armhf 5.2.4-1.1+b2 [83.1 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf apache2-bin armhf 2.4.41-4 [1150 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-2 [1138 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf uuid-dev armhf 2.34-0.1 [92.5 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libsctp1 armhf 1.0.18+dfsg-1 [27.6 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libsctp-dev armhf 1.0.18+dfsg-1 [81.1 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libapr1-dev armhf 1.6.5-1 [688 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libldap2-dev armhf 2.4.49+dfsg-1+rpi1 [303 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libaprutil1-dev armhf 1.6.1-4 [395 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1d-2 [806 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf apache2-dev armhf 2.4.41-4 [336 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libio-string-perl all 1.08-3 [12.3 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libdata-stag-perl all 0.14-2 [448 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libbio-perl-perl all 1.7.7-1 [2603 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libexception-class-perl all 1.44-1 [32.3 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libtest-deep-perl all 1.128-1 [48.8 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libalgorithm-diff-perl all 1.19.03-2 [47.9 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libtext-diff-perl all 1.45-1 [27.7 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libtest-differences-perl all 0.67-1 [18.7 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libsub-uplevel-perl all 0.2800-1 [16.3 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libtest-exception-perl all 0.43-1 [18.7 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libtest-warn-perl all 0.36-1 [16.2 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libtest-most-perl all 0.35-1 [24.5 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf bioperl all 1.7.7-1 [246 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf dh-exec armhf 0.23.2+b2 [25.7 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libanyevent-perl armhf 7.170-1 [399 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libanyevent-cachedns-perl all 0.08-2 [7150 B]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libcommon-sense-perl armhf 3.74-2+b20 [24.1 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libanyevent-http-perl all 2.24-1 [35.5 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libdevel-symdump-perl all 2.18-3 [17.3 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf liburi-perl all 1.76-2 [90.2 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libencode-locale-perl all 1.05-1 [13.7 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libtimedate-perl all 2.3100-1 [39.0 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libfile-listing-perl all 6.04-1 [10.3 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libhtml-tagset-perl all 3.20-4 [13.0 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libhtml-parser-perl armhf 3.72-3+b5 [101 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libhtml-tree-perl all 5.07-2 [213 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libio-html-perl all 1.001-1 [17.6 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libhttp-message-perl all 6.18-1 [77.8 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libhttp-cookies-perl all 6.08-1 [19.3 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf perl-openssl-defaults armhf 4 [7148 B]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libnet-ssleay-perl armhf 1.88-2 [300 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libio-socket-ssl-perl all 2.067-1 [212 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libnet-http-perl all 6.19-1 [24.8 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf liblwp-protocol-https-perl all 6.07-2 [9242 B]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libwww-perl all 6.43-1 [191 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libapache2-mod-perl2 armhf 2.0.11-2 [864 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libdbi-perl armhf 1.643-1 [771 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libapache-dbi-perl all 1.12-2 [50.7 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libbio-coordinate-perl all 1.7.1-3 [56.0 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libbio-db-biofetch-perl all 1.7.3-3 [17.2 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libcgi-pm-perl all 4.46-1 [223 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libbio-db-gff-perl all 1.7.4-1 [273 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libpq5 armhf 12.2-1 [154 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libdbd-pg-perl armhf 3.10.4-1 [203 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libdbd-sqlite3-perl armhf 1.64-1+b1 [170 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libbio-db-seqfeature-perl all 1.7.4-1 [169 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.8-1 [298 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.8-1 [691 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libgd3 armhf 2.2.5-5.2 [115 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libgd-perl armhf 2.71-2+b3 [135 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libbio-graphics-perl all 2.40-6 [610 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libcgi-session-perl all 4.48-3 [119 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libexporter-tiny-perl all 1.002001-1 [36.9 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libhttp-daemon-perl all 6.06-1 [22.2 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libjs-prototype all 1.7.1-3 [44.3 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libjs-scriptaculous all 1.9.0-2 [129 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libjson-perl all 4.02000-2 [88.8 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf liblist-moreutils-perl armhf 0.416-1+b5 [59.8 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libmodule-build-perl all 0.423100-1 [258 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libstatistics-descriptive-perl all 3.0702-1 [64.8 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libstring-approx-perl armhf 3.28-1+b2 [38.3 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libterm-readkey-perl armhf 2.38-1+b1 [26.5 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf libxml-sax-perl all 1.02+dfsg-1 [59.0 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libxml-libxml-perl armhf 2.0134+dfsg-1+b1 [328 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libxml-simple-perl all 2.25-1 [72.0 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libvm-ec2-perl all 1.28-2 [768 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf rename all 1.10-1 [17.2 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf sqlite3 armhf 3.31.1-2 [865 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 43.3 MB in 15s (2964 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 12214 files and directories currently installed.)
Preparing to unpack .../0-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libtinfo5:armhf.
Preparing to unpack .../1-libtinfo5_6.1+20191019-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.1+20191019-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../2-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../3-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../4-groff-base_1.22.4-4_armhf.deb ...
Unpacking groff-base (1.22.4-4) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../5-libpipeline1_1.5.2-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.2-2) ...
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Preparing to unpack .../6-man-db_2.9.0-2_armhf.deb ...
Unpacking man-db (2.9.0-2) ...
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Unpacking libldap-2.4-2:armhf (2.4.49+dfsg-1+rpi1) over (2.4.48+dfsg-1+b2) ...
Setting up libldap-2.4-2:armhf (2.4.49+dfsg-1+rpi1) ...
(Reading database ... 12872 files and directories currently installed.)
Preparing to unpack .../libsqlite3-0_3.31.1-2_armhf.deb ...
Unpacking libsqlite3-0:armhf (3.31.1-2) over (3.31.0+really3.30.1+fossil191229-1) ...
Setting up libsqlite3-0:armhf (3.31.1-2) ...
Selecting previously unselected package sensible-utils.
(Reading database ... 12872 files and directories currently installed.)
Preparing to unpack .../000-sensible-utils_0.0.12+nmu1_all.deb ...
Unpacking sensible-utils (0.0.12+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../001-libmagic-mgc_1%3a5.38-4_armhf.deb ...
Unpacking libmagic-mgc (1:5.38-4) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../002-libmagic1_1%3a5.38-4_armhf.deb ...
Unpacking libmagic1:armhf (1:5.38-4) ...
Selecting previously unselected package file.
Preparing to unpack .../003-file_1%3a5.38-4_armhf.deb ...
Unpacking file (1:5.38-4) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../004-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../005-ucf_3.0038+nmu1_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0038+nmu1) ...
Selecting previously unselected package libapr1:armhf.
Preparing to unpack .../006-libapr1_1.6.5-1_armhf.deb ...
Unpacking libapr1:armhf (1.6.5-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../007-libexpat1_2.2.9-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.9-1) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../008-libssl1.1_1.1.1d-2_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1d-2) ...
Selecting previously unselected package libaprutil1:armhf.
Preparing to unpack .../009-libaprutil1_1.6.1-4_armhf.deb ...
Unpacking libaprutil1:armhf (1.6.1-4) ...
Selecting previously unselected package libaprutil1-dbd-sqlite3:armhf.
Preparing to unpack .../010-libaprutil1-dbd-sqlite3_1.6.1-4_armhf.deb ...
Unpacking libaprutil1-dbd-sqlite3:armhf (1.6.1-4) ...
Selecting previously unselected package libaprutil1-ldap:armhf.
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Unpacking libaprutil1-ldap:armhf (1.6.1-4) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../012-libbrotli1_1.0.7-6_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.7-6) ...
Selecting previously unselected package libkeyutils1:armhf.
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Unpacking libkeyutils1:armhf (1.6.1-2) ...
Selecting previously unselected package libkrb5support0:armhf.
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Unpacking libkrb5support0:armhf (1.17-6+b1) ...
Selecting previously unselected package libk5crypto3:armhf.
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Unpacking libk5crypto3:armhf (1.17-6+b1) ...
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Unpacking libkrb5-3:armhf (1.17-6+b1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
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Unpacking libgssapi-krb5-2:armhf (1.17-6+b1) ...
Selecting previously unselected package libnghttp2-14:armhf.
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Unpacking libnghttp2-14:armhf (1.40.0-1+b2) ...
Selecting previously unselected package libpsl5:armhf.
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Unpacking libpsl5:armhf (0.20.2-2) ...
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Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Selecting previously unselected package libssh2-1:armhf.
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Unpacking libssh2-1:armhf (1.8.0-2.1) ...
Selecting previously unselected package libcurl4:armhf.
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Unpacking libcurl4:armhf (7.67.0-2) ...
Selecting previously unselected package libjansson4:armhf.
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Unpacking libjansson4:armhf (2.12-1) ...
Selecting previously unselected package liblua5.2-0:armhf.
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Selecting previously unselected package libicu63:armhf.
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Unpacking libicu63:armhf (63.2-2) ...
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Unpacking libxml2:armhf (2.9.4+dfsg1-8) ...
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Unpacking apache2-bin (2.4.41-4) ...
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Unpacking autotools-dev (20180224.1) ...
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Unpacking libsigsegv2:armhf (2.12-2) ...
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Unpacking m4 (1.4.18-4) ...
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Unpacking libtool (2.4.6-11) ...
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Unpacking dh-autoreconf (19) ...
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Unpacking libdebhelper-perl (12.9) ...
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Unpacking libarchive-zip-perl (1.67-1) ...
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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl'
Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl'
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Setting up libexpat1:armhf (2.2.9-1) ...
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No schema files found: doing nothing.
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Setting up libnghttp2-14:armhf (1.40.0-1+b2) ...
Setting up libmagic1:armhf (1:5.38-4) ...
Setting up libapr1:armhf (1.6.5-1) ...
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Setting up gettext-base (0.19.8.1-10) ...
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Setting up rename (1.10-1) ...
update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode
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Setting up libicu63:armhf (63.2-2) ...
Setting up libjansson4:armhf (2.12-1) ...
Setting up libmodule-build-perl (0.423100-1) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up libldap2-dev:armhf (2.4.49+dfsg-1+rpi1) ...
Setting up libxml-sax-base-perl (1.09-1) ...
Setting up libio-string-perl (1.08-3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libclass-data-inheritable-perl (0.08-3) ...
Setting up libexpat1-dev:armhf (2.2.9-1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libx11-data (2:1.6.8-1) ...
Setting up libtext-diff-perl (1.45-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up uuid-dev:armhf (2.34-0.1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libanyevent-cachedns-perl (0.08-2) ...
Setting up libpng16-16:armhf (1.6.37-2) ...
Setting up libio-html-perl (1.001-1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up libjs-prototype (1.7.1-3) ...
Setting up libcapture-tiny-perl (0.48-1) ...
Setting up libtimedate-perl (2.3100-1) ...
Setting up libsctp1:armhf (1.0.18+dfsg-1) ...
Setting up libdata-stag-perl (0.14-2) ...
Setting up liblua5.2-0:armhf (5.2.4-1.1+b2) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libjson-perl (4.02000-2) ...
Setting up libsub-uplevel-perl (0.2800-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up libdevel-symdump-perl (2.18-3) ...
Setting up libbio-perl-perl (1.7.7-1) ...
Setting up libexporter-tiny-perl (1.002001-1) ...
Setting up libterm-readkey-perl (2.38-1+b1) ...
Setting up openssl (1.1.1d-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20191019-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up liburi-perl (1.76-2) ...
Setting up sqlite3 (3.31.1-2) ...
Setting up libdbi-perl:armhf (1.643-1) ...
Setting up libaprutil1:armhf (1.6.1-4) ...
Setting up libnet-ssleay-perl (1.88-2) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.13.1-2) ...
Setting up libfile-listing-perl (6.04-1) ...
Setting up libtool (2.4.6-11) ...
Setting up libjs-scriptaculous (1.9.0-2) ...
Setting up liblist-moreutils-perl (0.416-1+b5) ...
Setting up libtest-warn-perl (0.36-1) ...
Setting up libtest-differences-perl (0.67-1) ...
Setting up libnet-http-perl (6.19-1) ...
Setting up m4 (1.4.18-4) ...
Setting up libexception-class-perl (1.44-1) ...
Setting up libaprutil1-ldap:armhf (1.6.1-4) ...
Setting up libaprutil1-dbd-sqlite3:armhf (1.6.1-4) ...
Setting up ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
128 added, 0 removed; done.
Setting up libtest-exception-perl (0.43-1) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libsctp-dev:armhf (1.0.18+dfsg-1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up libhtml-parser-perl (3.72-3+b5) ...
Setting up libcurl4:armhf (7.67.0-2) ...
Setting up libx11-6:armhf (2:1.6.8-1) ...
Setting up libdbd-sqlite3-perl:armhf (1.64-1+b1) ...
Setting up libio-socket-ssl-perl (2.067-1) ...
Setting up libhttp-message-perl (6.18-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhttp-negotiate-perl (6.01-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libstatistics-descriptive-perl (3.0702-1) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libhttp-cookies-perl (6.08-1) ...
Setting up libtest-most-perl (0.35-1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up libhtml-tree-perl (5.07-2) ...
Setting up libcgi-pm-perl (4.46-1) ...
Setting up libpq5:armhf (12.2-1) ...
Setting up libdbd-pg-perl (3.10.4-1) ...
Setting up apache2-bin (2.4.41-4) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.02+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libcgi-session-perl (4.48-3) ...
Setting up libapr1-dev (1.6.5-1) ...
Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libhttp-daemon-perl (6.06-1) ...
Setting up libaprutil1-dev (1.6.1-4) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up bioperl (1.7.7-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libbio-coordinate-perl (1.7.1-3) ...
Setting up libgd3:armhf (2.2.5-5.2) ...
Setting up libxml-simple-perl (2.25-1) ...
Setting up libgd-perl (2.71-2+b3) ...
Setting up liblwp-protocol-https-perl (6.07-2) ...
Setting up libwww-perl (6.43-1) ...
Setting up dh-autoreconf (19) ...
Setting up libapache2-mod-perl2 (2.0.11-2) ...
Setting up libbio-db-biofetch-perl (1.7.3-3) ...
Setting up libvm-ec2-perl (1.28-2) ...
Setting up debhelper (12.9) ...
Setting up dh-exec (0.23.2+b2) ...
Setting up libapache-dbi-perl (1.12-2) ...
Setting up libbio-db-gff-perl (1.7.4-1) ...
Setting up libbio-db-seqfeature-perl (1.7.4-1) ...
Setting up apache2-dev (2.4.41-4) ...
Setting up libbio-graphics-perl (2.40-6) ...
Setting up sbuild-build-depends-gbrowse-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-9+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.33.90.20200122-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-9+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apache2-bin_2.4.41-4 apache2-dev_2.4.41-4 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.90.20200122-2+rpi1 binutils-arm-linux-gnueabihf_2.33.90.20200122-2+rpi1 binutils-common_2.33.90.20200122-2+rpi1 bioperl_1.7.7-1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-exec_0.23.2+b2 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-5 libalgorithm-diff-perl_1.19.03-2 libanyevent-cachedns-perl_0.08-2 libanyevent-http-perl_2.24-1 libanyevent-perl_7.170-1 libapache-dbi-perl_1.12-2 libapache2-mod-perl2_2.0.11-2 libapr1_1.6.5-1 libapr1-dev_1.6.5-1 libaprutil1_1.6.1-4 libaprutil1-dbd-sqlite3_1.6.1-4 libaprutil1-dev_1.6.1-4 libaprutil1-ldap_1.6.1-4 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-25+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-25+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.90.20200122-2+rpi1 libbio-coordinate-perl_1.7.1-3 libbio-db-biofetch-perl_1.7.3-3 libbio-db-gff-perl_1.7.4-1 libbio-db-seqfeature-perl_1.7.4-1 libbio-graphics-perl_2.40-6 libbio-perl-perl_1.7.7-1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-9+rpi1 libc-dev-bin_2.29-9+rpi1 libc6_2.29-9+rpi1 libc6-dev_2.29-9+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcapture-tiny-perl_0.48-1 libcc1-0_9.2.1-25+rpi1 libcgi-pm-perl_4.46-1 libcgi-session-perl_4.48-3 libclass-data-inheritable-perl_0.08-3 libcom-err2_1.45.5-2 libcommon-sense-perl_3.74-2+b20 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libctf-nobfd0_2.33.90.20200122-2+rpi1 libctf0_2.33.90.20200122-2+rpi1 libcurl4_7.67.0-2 libdata-stag-perl_0.14-2 libdb5.3_5.3.28+dfsg1-0.6 libdbd-pg-perl_3.10.4-1 libdbd-sqlite3-perl_1.64-1+b1 libdbi-perl_1.643-1 libdebconfclient0_0.250 libdebhelper-perl_12.9 libdevel-stacktrace-perl_2.0400-1 libdevel-symdump-perl_2.18-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libencode-locale-perl_1.05-1 libexception-class-perl_1.44-1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libexporter-tiny-perl_1.002001-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_1.6.3-2 libfontconfig1_2.13.1-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.2.1-25+rpi1 libgcc1_1:9.2.1-25+rpi1 libgcrypt20_1.8.5-3 libgd-perl_2.71-2+b3 libgd3_2.2.5-5.2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-25+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libhtml-parser-perl_3.72-3+b5 libhtml-tagset-perl_3.20-4 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.08-1 libhttp-daemon-perl_6.06-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.18-1 libhttp-negotiate-perl_6.01-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.067-1 libio-string-perl_1.08-3 libisl22_0.22-2 libjansson4_2.12-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libjs-prototype_1.7.1-3 libjs-scriptaculous_1.9.0-2 libjson-perl_4.02000-2 libk5crypto3_1.17-6+b1 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.49+dfsg-1+rpi1 libldap-common_2.4.48+dfsg-1 libldap2-dev_2.4.49+dfsg-1+rpi1 liblist-moreutils-perl_0.416-1+b5 liblua5.2-0_5.2.4-1.1+b2 liblwp-mediatypes-perl_6.04-1 liblwp-protocol-https-perl_6.07-2 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmodule-build-perl_0.423100-1 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnet-http-perl_6.19-1 libnet-ssleay-perl_1.88-2 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2+b1 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-2 libpq5_12.2-1 libpsl5_0.20.2-2 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libsctp-dev_1.0.18+dfsg-1 libsctp1_1.0.18+dfsg-1 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-2 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstatistics-descriptive-perl_3.0702-1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 libstring-approx-perl_3.28-1+b2 libsub-override-perl_0.09-2 libsub-uplevel-perl_0.2800-1 libsystemd0_244.1-1+rpi1 libtasn1-6_4.15.0-2 libterm-readkey-perl_2.38-1+b1 libtest-deep-perl_1.128-1 libtest-differences-perl_0.67-1 libtest-exception-perl_0.43-1 libtest-most-perl_0.35-1 libtest-warn-perl_0.36-1 libtext-diff-perl_1.45-1 libtiff5_4.1.0+git191117-2 libtimedate-perl_2.3100-1 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtry-tiny-perl_0.30-1 libubsan1_9.2.1-25+rpi1 libuchardet0_0.0.6-3 libudev1_244.1-1+rpi1 libunistring2_0.9.10-2 liburi-perl_1.76-2 libuuid1_2.34-0.1 libvm-ec2-perl_1.28-2 libwebp6_0.6.1-2 libwww-perl_6.43-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.8-1+b2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-8 libxpm4_1:3.5.12-1 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-1 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 openssl_1.1.1d-2 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 perl-openssl-defaults_4 pinentry-curses_1.1.0-3 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 rename_1.10-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gbrowse-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sqlite3_3.31.1-2 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 uuid-dev_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Feb 16 11:23:44 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./gbrowse_2.56+dfsg-8.dsc
dpkg-source: info: extracting gbrowse in /<<BUILDDIR>>/gbrowse-2.56+dfsg
dpkg-source: info: unpacking gbrowse_2.56+dfsg.orig.tar.gz
dpkg-source: info: unpacking gbrowse_2.56+dfsg-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying debian-packaging-patch
dpkg-source: info: applying gbrowse-slave-fix_defaults_path
dpkg-source: info: applying manpages.patch
dpkg-source: info: applying fix_pop_url
dpkg-source: info: applying skip_check_installed_test.patch
dpkg-source: info: applying source_init_functions
dpkg-source: info: applying init_script_dependency.patch
dpkg-source: info: applying fix_runlevel.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying fix_whatis_entry.patch
dpkg-source: info: applying remove_copy_of_LoadHelper.pm.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-1a923ffe-14a0-46a8-be3c-385fe379f224
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package gbrowse
dpkg-buildpackage: info: source version 2.56+dfsg-8
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with apache2
dh_clean
debian/rules build-arch
dh build-arch --with apache2
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_auto_configure -- --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse
perl Build.PL --installdirs vendor --config "optimize=-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse
WARNING: the following files are missing in your kit:
contrib/ace2gff.pl
contrib/AxtPairwise_convert/axt2phy.pl
contrib/blast2gff.pl
contrib/conf_files/01.yeast.conf
contrib/conf_files/02.wormbase.conf
contrib/conf_files/03.fly.conf
contrib/conf_files/04.human.conf
contrib/conf_files/05.embl_proxy.conf
contrib/conf_files/06.biosql.conf
contrib/conf_files/07.chado.conf
contrib/conf_files/08.genbank.conf
contrib/conf_files/09.human_karyotype.conf
contrib/conf_files/index.html
contrib/conf_files/wormbase.syn
contrib/Coverage/INSTALL
contrib/Coverage/plugin/Coverage.pm
contrib/Coverage/README
contrib/gdump.pl
contrib/GeneFinder/genefinder/gfcode.c
contrib/GeneFinder/genefinder/README
contrib/GeneFinder/genefinder/readseq.c
contrib/GeneFinder/genefinder/readseq.h
contrib/GeneFinder/nematode_gftables/cds.hex
contrib/GeneFinder/nematode_gftables/gftables
contrib/GeneFinder/nematode_gftables/newnem.atg
contrib/GeneFinder/nematode_gftables/newnem.codon
contrib/GeneFinder/nematode_gftables/newnem.gene
contrib/GeneFinder/nematode_gftables/newnem.intron3
contrib/GeneFinder/nematode_gftables/newnem.intron5
contrib/GeneFinder/nematode_gftables/ref.hist
contrib/GeneFinder/nematode_gftables/zk637.atg
contrib/GeneFinder/nematode_gftables/zk637.intron3
contrib/GeneFinder/nematode_gftables/zk637.intron5
contrib/GeneFinder/nematode_gftables/zk637.trinuc
contrib/import_ncbi_mv_hs.pl
contrib/install_macosx/BuildConfig.pm
contrib/install_macosx/README.html
contrib/install_macosx/README.pod
contrib/install_macosx/scripts/build-gbrowse.pl
contrib/install_macosx/scripts/build-libraries.pl
contrib/README
contrib/SynView/cgi-lib/DAS/GUS.pm
contrib/SynView/cgi-lib/DAS/GUS/Segment.pm
contrib/SynView/cgi-lib/DAS/GUS/Segment/Feature.pm
contrib/SynView/cgi-lib/DAS/Util/SqlParser.pm
contrib/SynView/gbrowse.conf/plasmodb.conf
contrib/SynView/gbrowse.conf/plasmodb.xml
contrib/SynView/MAL11/MAL11.conf
contrib/SynView/MAL11/MAL11.fa
contrib/SynView/MAL11/MAL11.gff3
contrib/SynView/README
contrib/TextDumper/README
contrib/TextDumper/TextDumper.pm
lib/Bio/DB/SeqFeature/Store/LoadHelper.pm
Please inform the author.
Checking prerequisites...
recommends:
* Bio::DB::BigFile is not installed
* Bio::DB::Sam is not installed
* Bio::Das is not installed
* Crypt::SSLeay is not installed
* DBD::mysql is not installed
* DB_File::Lock is not installed
* FCGI is not installed
* File::NFSLock is not installed
* GD::SVG is not installed
* Net::OpenID::Consumer is not installed
* Net::SMTP::SSL is not installed
* Parse::Apache::ServerStatus is not installed
* Template is not installed
* Do not worry if some "recommended" prerequisites are missing. You can install *
* them later if you need the features they provide. Do not proceed with the *
* install if any of "REQUIRED" prerequisites are missing. *
* *
* The optional Safe::World module does not currently run on Perl 5.10 or *
* higher, and so cannot be installed. *
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
Run 'Build installdeps' to install missing prerequisites.
**** WARNING *****************************************************************************************
If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please
set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to
create/update your user account database.
See /etc/gbrowse2/GBrowse.conf.new for suggested settings.
******************************************************************************************************
Now run:
./Build test
./Build demo (optional)
./Build install (as superuser/administrator)
-or-
./Build install_slave (optional, for slave installations)
Other useful targets:
./Build register (to register your copy of GBrowse)
./Build reconfig (to reconfigure install locations)
./Build demostop (to stop the demo)
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'GBrowse' version '2.56'
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_auto_build -a
perl Build
NOTE: Run ./Build reconfig to change existing configuration.
Building GBrowse
arm-linux-gnueabihf-gcc -I/<<BUILDDIR>>/gbrowse-2.56+dfsg/libalign -I/usr/lib/arm-linux-gnueabihf/perl/5.30/CORE -DVERSION="2.56" -DXS_VERSION="2.56" -fPIC -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/Graphics/Browser2/CAlign.o lib/Bio/Graphics/Browser2/CAlign.c
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs')
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.so lib/Bio/Graphics/Browser2/CAlign.o
Performing variable substitutions in blib/conf/aws_balancer.conf
Performing variable substitutions in blib/conf/detail_select_menu.conf
Performing variable substitutions in blib/conf/enzymes.txt
Performing variable substitutions in blib/conf/GBrowse.conf
Performing variable substitutions in blib/conf/log4perl.conf
Performing variable substitutions in blib/conf/MobyServices/moby.conf
Performing variable substitutions in blib/conf/pop_demo.conf
Performing variable substitutions in blib/conf/renderfarm.conf
Performing variable substitutions in blib/conf/slave_preload.conf
Performing variable substitutions in blib/conf/submitter_plugin.conf
Performing variable substitutions in blib/conf/synteny/oryza.synconf.disabled.conf
Performing variable substitutions in blib/conf/synteny/rice_synteny.conf
Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf
Performing variable substitutions in blib/conf/themes/solid_gray_colors
Performing variable substitutions in blib/conf/themes/transparent_colors
Performing variable substitutions in blib/conf/themes/warm_colors
Performing variable substitutions in blib/conf/volvox.conf
Performing variable substitutions in blib/conf/yeast_chr1+2.conf
Performing variable substitutions in blib/conf/yeast_renderfarm.conf
Performing variable substitutions in blib/conf/yeast_simple.conf
Performing variable substitutions in blib/htdocs/annotation_help.html
Performing variable substitutions in blib/htdocs/cloud_index.html
Performing variable substitutions in blib/htdocs/example_scripts/index.html
Performing variable substitutions in blib/htdocs/example_scripts/README
Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html
Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html
Performing variable substitutions in blib/htdocs/general_help.html
Performing variable substitutions in blib/htdocs/index.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf
Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html
Performing variable substitutions in blib/htdocs/vbox_index.html
Use of uninitialized value in pattern match (m//) at /<<BUILDDIR>>/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 778.
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_auto_test -- TEST_FILES="t/02.rearchitecture.t t/05.deferredrendering.t t/00.compile.t t/01.yeast.t t/07.balancer.t t/08.calign.t"
perl Build test --verbose 1 "TEST_FILES=t/02.rearchitecture.t t/05.deferredrendering.t t/00.compile.t t/01.yeast.t t/07.balancer.t t/08.calign.t"
NOTE: Run ./Build reconfig to change existing configuration.
Use of uninitialized value in pattern match (m//) at /<<BUILDDIR>>/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 778.
t/00.compile.t ............
ok 1 - cgi-bin/das compiled ok
ok 2 - cgi-bin/das stderr said "syntax OK"
ok 3 - cgi-bin/das nothing on stdout
ok 4 - cgi-bin/gbgff compiled ok
ok 5 - cgi-bin/gbgff stderr said "syntax OK"
ok 6 - cgi-bin/gbgff nothing on stdout
ok 7 - cgi-bin/gbrowse compiled ok
ok 8 - cgi-bin/gbrowse stderr said "syntax OK"
ok 9 - cgi-bin/gbrowse nothing on stdout
ok 10 - cgi-bin/gbrowse_details compiled ok
ok 11 - cgi-bin/gbrowse_details stderr said "syntax OK"
ok 12 - cgi-bin/gbrowse_details nothing on stdout
ok 13 # skip explicitly skipping cgi-bin/gbrowse_gmap
ok 14 - cgi-bin/gbrowse_img compiled ok
ok 15 - cgi-bin/gbrowse_img stderr said "syntax OK"
ok 16 - cgi-bin/gbrowse_img nothing on stdout
ok 17 - cgi-bin/gbrowse_key_img compiled ok
ok 18 - cgi-bin/gbrowse_key_img stderr said "syntax OK"
ok 19 - cgi-bin/gbrowse_key_img nothing on stdout
ok 20 - cgi-bin/gbrowse_login compiled ok
ok 21 - cgi-bin/gbrowse_login stderr said "syntax OK"
ok 22 - cgi-bin/gbrowse_login nothing on stdout
ok 23 - cgi-bin/gbrowse_syn compiled ok
ok 24 - cgi-bin/gbrowse_syn stderr said "syntax OK"
ok 25 - cgi-bin/gbrowse_syn nothing on stdout
ok 26 - bin/auto_install_databases.pl compiled ok
ok 27 - bin/auto_install_databases.pl stderr said "syntax OK"
ok 28 - bin/auto_install_databases.pl nothing on stdout
ok 29 - bin/bed2gff3.pl compiled ok
ok 30 - bin/bed2gff3.pl stderr said "syntax OK"
ok 31 - bin/bed2gff3.pl nothing on stdout
ok 32 - bin/bp_load_gff.pl compiled ok
ok 33 - bin/bp_load_gff.pl stderr said "syntax OK"
ok 34 - bin/bp_load_gff.pl nothing on stdout
ok 35 # skip explicitly skipping bin/gbrowse_aws_balancer.pl
ok 36 - bin/gbrowse_change_passwd.pl compiled ok
ok 37 - bin/gbrowse_change_passwd.pl stderr said "syntax OK"
ok 38 - bin/gbrowse_change_passwd.pl nothing on stdout
ok 39 - bin/gbrowse_clean.pl compiled ok
ok 40 - bin/gbrowse_clean.pl stderr said "syntax OK"
ok 41 - bin/gbrowse_clean.pl nothing on stdout
ok 42 - bin/gbrowse_configure_slaves.pl compiled ok
ok 43 - bin/gbrowse_configure_slaves.pl stderr said "syntax OK"
ok 44 - bin/gbrowse_configure_slaves.pl nothing on stdout
ok 45 - bin/gbrowse_create_account.pl compiled ok
ok 46 - bin/gbrowse_create_account.pl stderr said "syntax OK"
ok 47 - bin/gbrowse_create_account.pl nothing on stdout
ok 48 # skip explicitly skipping bin/gbrowse_grow_cloud_vol.pl
ok 49 - bin/gbrowse_import_ucsc_db.pl compiled ok
ok 50 - bin/gbrowse_import_ucsc_db.pl stderr said "syntax OK"
ok 51 - bin/gbrowse_import_ucsc_db.pl nothing on stdout
ok 52 - bin/gbrowse_metadb_config.pl compiled ok
ok 53 - bin/gbrowse_metadb_config.pl stderr said "syntax OK"
ok 54 - bin/gbrowse_metadb_config.pl nothing on stdout
ok 55 # skip explicitly skipping bin/gbrowse_netinstall.pl
ok 56 # skip explicitly skipping bin/gbrowse_netinstall2.pl
ok 57 - bin/gbrowse_set_admin_passwd.pl compiled ok
ok 58 - bin/gbrowse_set_admin_passwd.pl stderr said "syntax OK"
ok 59 - bin/gbrowse_set_admin_passwd.pl nothing on stdout
ok 60 - bin/gbrowse_slave compiled ok
ok 61 - bin/gbrowse_slave stderr said "syntax OK"
ok 62 - bin/gbrowse_slave nothing on stdout
ok 63 # skip explicitly skipping bin/gbrowse_slave_start_aws.sh
ok 64 - bin/gbrowse_syn_load_alignment_database.pl compiled ok
ok 65 - bin/gbrowse_syn_load_alignment_database.pl stderr said "syntax OK"
ok 66 - bin/gbrowse_syn_load_alignment_database.pl nothing on stdout
ok 67 - bin/gbrowse_syn_load_alignments_msa.pl compiled ok
ok 68 - bin/gbrowse_syn_load_alignments_msa.pl stderr said "syntax OK"
ok 69 - bin/gbrowse_syn_load_alignments_msa.pl nothing on stdout
ok 70 # skip explicitly skipping bin/gbrowse_sync_aws_slave.pl
ok 71 - bin/gtf2gff3.pl compiled ok
ok 72 - bin/gtf2gff3.pl stderr said "syntax OK"
ok 73 - bin/gtf2gff3.pl nothing on stdout
ok 74 - bin/load_genbank.pl compiled ok
ok 75 - bin/load_genbank.pl stderr said "syntax OK"
ok 76 - bin/load_genbank.pl nothing on stdout
ok 77 # skip explicitly skipping bin/make_das_conf.pl
ok 78 - bin/process_bamfiles.pl compiled ok
ok 79 - bin/process_bamfiles.pl stderr said "syntax OK"
ok 80 - bin/process_bamfiles.pl nothing on stdout
ok 81 - bin/process_gadfly.pl compiled ok
ok 82 - bin/process_gadfly.pl stderr said "syntax OK"
ok 83 - bin/process_gadfly.pl nothing on stdout
ok 84 - bin/process_ncbi_human.pl compiled ok
ok 85 - bin/process_ncbi_human.pl stderr said "syntax OK"
ok 86 - bin/process_ncbi_human.pl nothing on stdout
ok 87 - bin/process_sgd.pl compiled ok
ok 88 - bin/process_sgd.pl stderr said "syntax OK"
ok 89 - bin/process_sgd.pl nothing on stdout
ok 90 - bin/report_missing_language_tags.pl compiled ok
ok 91 - bin/report_missing_language_tags.pl stderr said "syntax OK"
ok 92 - bin/report_missing_language_tags.pl nothing on stdout
ok 93 - bin/scan_gbrowse.pl compiled ok
ok 94 - bin/scan_gbrowse.pl stderr said "syntax OK"
ok 95 - bin/scan_gbrowse.pl nothing on stdout
ok 96 - bin/split_wig.pl compiled ok
ok 97 - bin/split_wig.pl stderr said "syntax OK"
ok 98 - bin/split_wig.pl nothing on stdout
ok 99 - bin/ucsc_genes2gff.pl compiled ok
ok 100 - bin/ucsc_genes2gff.pl stderr said "syntax OK"
ok 101 - bin/ucsc_genes2gff.pl nothing on stdout
ok 102 - bin/wiggle2gff3.pl compiled ok
ok 103 - bin/wiggle2gff3.pl stderr said "syntax OK"
ok 104 - bin/wiggle2gff3.pl nothing on stdout
1..104
ok
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
t/01.yeast.t ..............
1..7
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok
t/02.rearchitecture.t .....
1..90
ok 1
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ok
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value $_[5] in pack at /usr/share/perl5/Bio/DB/IndexedBase.pm line 1005, <GEN171> line 2.
Use of uninitialized value $_[5] in pack at /usr/share/perl5/Bio/DB/IndexedBase.pm line 1005, <GEN176> line 2.
t/03.render.t .............
1..150
ok 1
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ok
Sometimes this test gets 'stuck'. If this happens, kill the test and Build test again.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
(in cleanup) Error in tempdir() using /tmp/gbrowse_testing/XXXXXXXXXX: Parent directory (/tmp/gbrowse_testing) does not exist at /usr/share/perl5/Bio/DB/SeqFeature/Store/memory.pm line 704.
Could not open database: Can't call method "seq" on an undefined value at /usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm line 173, <GEN3> line 19.
Could not open database: Can't call method "seq" on an undefined value at /usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm line 173, <GEN4> line 21.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
t/04.remoteserver.t .......
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Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
t/05.deferredrendering.t ..
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Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
t/06.featuresearch.t ......
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t/07.balancer.t ........... skipped: Optional module Parse::Apache::ServerStatus not installed
t/07.karyotype.t ..........
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t/08.calign.t .............
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# Running under perl version 5.030000 for linux
# Current time local: Tue Feb 18 06:29:57 2020
# Current time GMT: Tue Feb 18 06:29:57 2020
# Using Test.pm version 1.31
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All tests successful.
Files=10, Tests=448, 297 wallclock secs ( 0.56 usr 0.07 sys + 120.41 cusr 16.91 csys = 137.95 CPU)
Result: PASS
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with apache2
dh_testroot -a
dh_prep -a
debian/rules override_dh_installdirs
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
# svn(-buildpackage) seems to ignore the x bit
chmod +x debian/gbrowse-calign.dirs
dh_installdirs
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
./Build --install_base=debian/gbrowse debianinstall
NOTE: Run ./Build reconfig to change existing configuration.
Use of uninitialized value in pattern match (m//) at /<<BUILDDIR>>/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 778.
Building GBrowse
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.so
Installing debian/gbrowse/man/man1/bed2gff3.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_aws_balancer.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_clean.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_grow_cloud_vol.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_sync_aws_slave.pl.1p
Installing debian/gbrowse/man/man1/gtf2gff3.pl.1p
Installing debian/gbrowse/man/man1/load_genbank.pl.1p
Installing debian/gbrowse/man/man1/make_das_conf.pl.1p
Installing debian/gbrowse/man/man1/ucsc_genes2gff.pl.1p
Installing debian/gbrowse/man/man1/wiggle2gff3.pl.1p
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/das
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbgff
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_details
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_gmap
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_img
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_key_img
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_login
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_syn
Installing debian/gbrowse/etc/gbrowse/aws_balancer.conf
Installing debian/gbrowse/etc/gbrowse/detail_select_menu.conf
Installing debian/gbrowse/etc/gbrowse/enzymes.txt
Installing debian/gbrowse/etc/gbrowse/GBrowse.conf
Installing debian/gbrowse/etc/gbrowse/log4perl.conf
Installing debian/gbrowse/etc/gbrowse/pop_demo.conf
Installing debian/gbrowse/etc/gbrowse/renderfarm.conf
Installing debian/gbrowse/etc/gbrowse/slave_preload.conf
Installing debian/gbrowse/etc/gbrowse/submitter_plugin.conf
Installing debian/gbrowse/etc/gbrowse/volvox.conf
Installing debian/gbrowse/etc/gbrowse/yeast_chr1+2.conf
Installing debian/gbrowse/etc/gbrowse/yeast_renderfarm.conf
Installing debian/gbrowse/etc/gbrowse/yeast_simple.conf
Installing debian/gbrowse/etc/gbrowse/languages/de.pm
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Installing debian/gbrowse/etc/gbrowse/languages/fr.pm
Installing debian/gbrowse/etc/gbrowse/languages/is.pm
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Installing debian/gbrowse/etc/gbrowse/languages/zh.pm
Installing debian/gbrowse/etc/gbrowse/languages/zh_cn.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_gif_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_jpeg_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.PMS
Installing debian/gbrowse/etc/gbrowse/MobyServices/moby.conf
Installing debian/gbrowse/etc/gbrowse/MobyServices/text_formatted_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/text_html_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/text_plain_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm
Installing debian/gbrowse/etc/gbrowse/plugins/Aligner.pm
Installing debian/gbrowse/etc/gbrowse/plugins/AlignTwoSequences.pm
Installing debian/gbrowse/etc/gbrowse/plugins/AttributeHiliter.pm
Installing debian/gbrowse/etc/gbrowse/plugins/BatchDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/Blat.pm
Installing debian/gbrowse/etc/gbrowse/plugins/CMapDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/CreateBlastDB.pm
Installing debian/gbrowse/etc/gbrowse/plugins/FastaDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/FBTableDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/FilterTest.pm
Installing debian/gbrowse/etc/gbrowse/plugins/GeneFinder.pm
Installing debian/gbrowse/etc/gbrowse/plugins/LDAPAuthenticate.pm
Installing debian/gbrowse/etc/gbrowse/plugins/OligoFinder.pm
Installing debian/gbrowse/etc/gbrowse/plugins/PamAuthenticate.pm
Installing debian/gbrowse/etc/gbrowse/plugins/PrimerDesigner.pm
Installing debian/gbrowse/etc/gbrowse/plugins/ProteinDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/RandomGene.pm
Installing debian/gbrowse/etc/gbrowse/plugins/RestrictionAnnotator.pm
Installing debian/gbrowse/etc/gbrowse/plugins/SequenceDumper.pm
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Installing debian/gbrowse/etc/gbrowse/plugins/SinWave.pm
Installing debian/gbrowse/etc/gbrowse/plugins/SourceTrackFinder.pm
Installing debian/gbrowse/etc/gbrowse/plugins/Spectrogram.pm
Installing debian/gbrowse/etc/gbrowse/plugins/Submitter.pm
Installing debian/gbrowse/etc/gbrowse/plugins/test.pm
Installing debian/gbrowse/etc/gbrowse/plugins/TestAuthenticator.pm
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Installing debian/gbrowse/etc/gbrowse/plugins/TrackDumper.pm
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Installing debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled.conf
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Installing debian/gbrowse/etc/gbrowse/themes/solid_gray_colors
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Installing debian/gbrowse/var/lib/gbrowse/databases/admin_uploads/README
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Installing debian/gbrowse/var/lib/gbrowse/databases/pop_demo/pop_demo.gff3
Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_chr1+2/dummy.fa
Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_chr1+2/yeast_chr1+2.gff3
Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chr1.fa
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Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chromosomes.gff3
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Installing debian/gbrowse/usr/share/gbrowse/htdocs/general_help.html.zh
Installing debian/gbrowse/usr/share/gbrowse/htdocs/gmod_cog.jpeg
Installing debian/gbrowse/usr/share/gbrowse/htdocs/index.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/vbox_index.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_autocomplete.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_elements.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_solid.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_transparent.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_warm.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/karyotype.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/menulink.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/menulink_active.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/snapshots.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/subtracktable.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/titlebar-default.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/titlebar-safari.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/tracks.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/default_theme.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/dropdown.css
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Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down.png
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Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-open.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left.png
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Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right-open.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up-on.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up-open.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern1.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern2.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern3.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_get_sessionid.pl
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_new_sessionid.pl
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_data.pl
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_file.pl
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/index.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/README
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/test_file.bed
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/backgrounds/cloud.jpg
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/backgrounds/lrock005.jpg
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/backgrounds/steel.jpg
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/balloon.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/balloon_ie.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/close.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/down_left.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/down_right.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/up_left.png
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Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/match_gap.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/reftranscript.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/waba_alignment.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/wormbase_gene.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/Alias.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/BedLoader.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/Tag.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/mysql.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/GBrowseFeature.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Karyotype.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Action.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/CAlign.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/CachedTrack.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataBase.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataSource.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/ExternalData.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/GFFhelper.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/I18n.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Markup.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/OptionPick.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PadAlignment.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PluginSet.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Realign.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Region.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RegionSearch.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RemoteSet.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RenderPanels.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SendMail.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Session.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Shellwords.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SubtrackTable.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserDB.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Util.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/archive.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bam.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bed.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bigbed.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bigwig.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/featurefile.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/generic.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff3.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/sam.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/useq.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/wiggle.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Login.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/SnapshotManager.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/TrackConfig.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave/AWS_Balancer.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave/Status.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Database.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Filesystem.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/CGI/Toggle.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/DB/SyntenyBlock.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/DB/SyntenyIO.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/I18n.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/PageSettings.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Synteny.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Util.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::match_gap.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::waba_alignment.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::wormbase_gene.3pm
Installing debian/gbrowse/man/man3/Bio::DB::SeqFeature::Store::Alias.3pm
Installing debian/gbrowse/man/man3/Bio::DB::Tagger.3pm
Installing debian/gbrowse/man/man3/Bio::DB::Tagger::Tag.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::AuthorizedFeatureFile.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataBase.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataLoader::archive.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataLoader::useq.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataSource.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::GFFhelper.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Markup.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::OptionPick.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin::AuthPlugin.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PluginSet.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Realign.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Region.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RegionSearch.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render::Slave::Status.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Util.3pm
Installing debian/gbrowse/man/man3/CGI::Toggle.3pm
Installing debian/gbrowse/man/man3/GBrowse::ConfigData.3pm
Installing debian/gbrowse/man/man3/Legacy::Graphics::Browser.3pm
Installing debian/gbrowse/bin/bed2gff3.pl
Installing debian/gbrowse/bin/gbrowse_aws_balancer.pl
Installing debian/gbrowse/bin/gbrowse_change_passwd.pl
Installing debian/gbrowse/bin/gbrowse_clean.pl
Installing debian/gbrowse/bin/gbrowse_configure_slaves.pl
Installing debian/gbrowse/bin/gbrowse_create_account.pl
Installing debian/gbrowse/bin/gbrowse_grow_cloud_vol.pl
Installing debian/gbrowse/bin/gbrowse_import_ucsc_db.pl
Installing debian/gbrowse/bin/gbrowse_metadb_config.pl
Installing debian/gbrowse/bin/gbrowse_set_admin_passwd.pl
Installing debian/gbrowse/bin/gbrowse_slave
Installing debian/gbrowse/bin/gbrowse_syn_load_alignment_database.pl
Installing debian/gbrowse/bin/gbrowse_syn_load_alignments_msa.pl
Installing debian/gbrowse/bin/gbrowse_sync_aws_slave.pl
Installing debian/gbrowse/bin/gtf2gff3.pl
Installing debian/gbrowse/bin/load_genbank.pl
Installing debian/gbrowse/bin/make_das_conf.pl
Installing debian/gbrowse/bin/scan_gbrowse.pl
Installing debian/gbrowse/bin/ucsc_genes2gff.pl
Installing debian/gbrowse/bin/wiggle2gff3.pl
#./Build apache_conf > debian/gbrowse/etc/gbrowse/gbrowse_apache2.conf
perl Build.PL --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse --installetc=y
WARNING: the following files are missing in your kit:
contrib/ace2gff.pl
contrib/AxtPairwise_convert/axt2phy.pl
contrib/blast2gff.pl
contrib/conf_files/01.yeast.conf
contrib/conf_files/02.wormbase.conf
contrib/conf_files/03.fly.conf
contrib/conf_files/04.human.conf
contrib/conf_files/05.embl_proxy.conf
contrib/conf_files/06.biosql.conf
contrib/conf_files/07.chado.conf
contrib/conf_files/08.genbank.conf
contrib/conf_files/09.human_karyotype.conf
contrib/conf_files/index.html
contrib/conf_files/wormbase.syn
contrib/Coverage/INSTALL
contrib/Coverage/plugin/Coverage.pm
contrib/Coverage/README
contrib/gdump.pl
contrib/GeneFinder/genefinder/gfcode.c
contrib/GeneFinder/genefinder/README
contrib/GeneFinder/genefinder/readseq.c
contrib/GeneFinder/genefinder/readseq.h
contrib/GeneFinder/nematode_gftables/cds.hex
contrib/GeneFinder/nematode_gftables/gftables
contrib/GeneFinder/nematode_gftables/newnem.atg
contrib/GeneFinder/nematode_gftables/newnem.codon
contrib/GeneFinder/nematode_gftables/newnem.gene
contrib/GeneFinder/nematode_gftables/newnem.intron3
contrib/GeneFinder/nematode_gftables/newnem.intron5
contrib/GeneFinder/nematode_gftables/ref.hist
contrib/GeneFinder/nematode_gftables/zk637.atg
contrib/GeneFinder/nematode_gftables/zk637.intron3
contrib/GeneFinder/nematode_gftables/zk637.intron5
contrib/GeneFinder/nematode_gftables/zk637.trinuc
contrib/import_ncbi_mv_hs.pl
contrib/install_macosx/BuildConfig.pm
contrib/install_macosx/README.html
contrib/install_macosx/README.pod
contrib/install_macosx/scripts/build-gbrowse.pl
contrib/install_macosx/scripts/build-libraries.pl
contrib/README
contrib/SynView/cgi-lib/DAS/GUS.pm
contrib/SynView/cgi-lib/DAS/GUS/Segment.pm
contrib/SynView/cgi-lib/DAS/GUS/Segment/Feature.pm
contrib/SynView/cgi-lib/DAS/Util/SqlParser.pm
contrib/SynView/gbrowse.conf/plasmodb.conf
contrib/SynView/gbrowse.conf/plasmodb.xml
contrib/SynView/MAL11/MAL11.conf
contrib/SynView/MAL11/MAL11.fa
contrib/SynView/MAL11/MAL11.gff3
contrib/SynView/README
contrib/TextDumper/README
contrib/TextDumper/TextDumper.pm
lib/Bio/DB/SeqFeature/Store/LoadHelper.pm
Please inform the author.
Checking prerequisites...
recommends:
* Bio::DB::BigFile is not installed
* Bio::DB::Sam is not installed
* Bio::Das is not installed
* Crypt::SSLeay is not installed
* DBD::mysql is not installed
* DB_File::Lock is not installed
* FCGI is not installed
* File::NFSLock is not installed
* GD::SVG is not installed
* Net::OpenID::Consumer is not installed
* Net::SMTP::SSL is not installed
* Parse::Apache::ServerStatus is not installed
* Template is not installed
* Do not worry if some "recommended" prerequisites are missing. You can install *
* them later if you need the features they provide. Do not proceed with the *
* install if any of "REQUIRED" prerequisites are missing. *
* *
* The optional Safe::World module does not currently run on Perl 5.10 or *
* higher, and so cannot be installed. *
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
Run 'Build installdeps' to install missing prerequisites.
**** WARNING *****************************************************************************************
If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please
set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to
create/update your user account database.
See /etc/gbrowse2/GBrowse.conf.new for suggested settings.
******************************************************************************************************
NOTE: Run ./Build reconfig to change existing configuration.
Now run:
./Build test
./Build demo (optional)
./Build install (as superuser/administrator)
-or-
./Build install_slave (optional, for slave installations)
Other useful targets:
./Build register (to register your copy of GBrowse)
./Build reconfig (to reconfigure install locations)
./Build demostop (to stop the demo)
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'GBrowse' version '2.56'
./Build --install_base=debian/gbrowse install_slave
NOTE: Run ./Build reconfig to change existing configuration.
Performing variable substitutions in blib/conf/aws_balancer.conf
Performing variable substitutions in blib/conf/detail_select_menu.conf
Performing variable substitutions in blib/conf/enzymes.txt
Performing variable substitutions in blib/conf/GBrowse.conf
Performing variable substitutions in blib/conf/log4perl.conf
Performing variable substitutions in blib/conf/MobyServices/moby.conf
Performing variable substitutions in blib/conf/pop_demo.conf
Performing variable substitutions in blib/conf/renderfarm.conf
Performing variable substitutions in blib/conf/slave_preload.conf
Performing variable substitutions in blib/conf/submitter_plugin.conf
Performing variable substitutions in blib/conf/synteny/oryza.synconf.disabled.conf
Performing variable substitutions in blib/conf/synteny/rice_synteny.conf
Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf
Performing variable substitutions in blib/conf/themes/solid_gray_colors
Performing variable substitutions in blib/conf/themes/transparent_colors
Performing variable substitutions in blib/conf/themes/warm_colors
Performing variable substitutions in blib/conf/volvox.conf
Performing variable substitutions in blib/conf/yeast_chr1+2.conf
Performing variable substitutions in blib/conf/yeast_renderfarm.conf
Performing variable substitutions in blib/conf/yeast_simple.conf
Performing variable substitutions in blib/htdocs/annotation_help.html
Performing variable substitutions in blib/htdocs/cloud_index.html
Performing variable substitutions in blib/htdocs/example_scripts/index.html
Performing variable substitutions in blib/htdocs/example_scripts/README
Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html
Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html
Performing variable substitutions in blib/htdocs/general_help.html
Performing variable substitutions in blib/htdocs/index.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf
Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html
Performing variable substitutions in blib/htdocs/vbox_index.html
Performing variable substitutions in blib/etc/default/gbrowse-aws-balancer
Use of uninitialized value $wwwuser in substitution (s///) at /<<BUILDDIR>>/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 871, <GEN91> line 10.
Performing variable substitutions in blib/etc/default/gbrowse-slave
Performing variable substitutions in blib/etc/init.d/gbrowse-aws-balancer
Performing variable substitutions in blib/etc/init.d/gbrowse-slave
Use of uninitialized value $wwwuser in substitution (s///) at /<<BUILDDIR>>/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 871, <GEN97> line 20.
Building GBrowse
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing debian/gbrowse/etc/default/gbrowse-aws-balancer
Installing debian/gbrowse/etc/default/gbrowse-slave
Installing debian/gbrowse/etc/init.d/gbrowse-aws-balancer
Installing debian/gbrowse/etc/init.d/gbrowse-slave
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm
mv debian/gbrowse/lib/perl5/* debian/gbrowse/usr/share/perl5
# Remove arch dependant data
mkdir -p debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/Graphics/Browser2/CAlign/
mkdir -p debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/Graphics/Browser2/
mv debian/gbrowse/usr/share/perl5/auto/Bio/Graphics/Browser2/CAlign/* debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/Graphics/Browser2/CAlign/
mv debian/gbrowse/usr/share/perl5/Bio/Graphics/Browser2/CAlign.pm debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/Graphics/Browser2/CAlign.pm
rm -rf debian/gbrowse/lib
rm -f debian/gbrowse/usr/share/doc/gbrowse/INSTALL
rm -f debian/gbrowse/usr/share/perl5/auto/GBrowse/.packlist
rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/prototype.js
rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/scriptaculous.js
chmod 644 debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm
chmod 644 debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled.conf
#Remove database (kept as separate package)
rm -rf debian/gbrowse/var/lib/gbrowse/databases/*
#Rename pl scripts in bin
file-rename 's/\.pl//' debian/gbrowse/bin/*.pl
mv debian/gbrowse/bin debian/gbrowse/usr/bin
# Activate configuration files.
find /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/etc -name '*.new' | xargs file-rename 's/.new//'
rm -rf /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/usr/share/perl5/auto
# Update conf files
sed -i 's/gbrowse2/gbrowse/g' /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/etc/gbrowse/yeast*.conf
sed -i 's/gbrowse2/gbrowse/g' /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/etc/gbrowse/slave*.conf
# move OpenID constumer secret to /etc/gbrowse to make it system admin configurable
mv /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/usr/share/perl5/GBrowse/ConfigData.pm /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/etc/gbrowse/ConfigData.pm
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_install -a
dh_apache2 -a
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
#Rename due to perl extension seen as polish
file-rename 's/\.pl\.1p/\.1p/' debian/gbrowse/man/man1/*.pl.1p
mkdir -p debian/gbrowse-calign/man/man3/
mv debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm debian/gbrowse-calign/man/man3/Bio::Graphics::Browser2::CAlign.3pm
dh_installman
rm -rf debian/gbrowse/man
rm -rf debian/gbrowse-calign/man
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_lintian -a
dh_perl -a
debian/rules override_dh_link
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_link
# Fix broken link ... even if I habe no idea what a link to a not existing dir should serve for
ln -sf /var/cache/gbrowse/images debian/gbrowse/usr/share/gbrowse/htdocs/i
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'gbrowse-calign' in '../gbrowse-calign_2.56+dfsg-8_armhf.deb'.
dpkg-deb: building package 'gbrowse-calign-dbgsym' in '../gbrowse-calign-dbgsym_2.56+dfsg-8_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../gbrowse_2.56+dfsg-8_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-02-18T06:31:38Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
gbrowse_2.56+dfsg-8_armhf.changes:
----------------------------------
Format: 1.8
Date: Sun, 16 Feb 2020 12:19:11 +0100
Source: gbrowse
Binary: gbrowse-calign gbrowse-calign-dbgsym
Architecture: armhf
Version: 2.56+dfsg-8
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
gbrowse-calign - CAlign helper
Closes: 785314 950746
Changes:
gbrowse (2.56+dfsg-8) unstable; urgency=medium
.
* Multi-Arch: foreign
Closes: #785314
* Fix homepage
Closes: #950746
* Standards-Version: 4.5.0 (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
Checksums-Sha1:
8e7afd1899e062984d02410b4cb8bb47413204d4 30092 gbrowse-calign-dbgsym_2.56+dfsg-8_armhf.deb
132d9c18351bc46d5e8c8cdce3643660a96c88e5 36040 gbrowse-calign_2.56+dfsg-8_armhf.deb
288711b3705692bed17d7ccfbf4cc559783e8f42 9086 gbrowse_2.56+dfsg-8_armhf.buildinfo
Checksums-Sha256:
693d3b00e65428dcab8e7fb289b1dc07497780cfa3e18ceafc39679b05005d61 30092 gbrowse-calign-dbgsym_2.56+dfsg-8_armhf.deb
92e9b186400f4c11b79028322dff90cb193f9f664cb95eb970b9745ba773c3c3 36040 gbrowse-calign_2.56+dfsg-8_armhf.deb
27aa45e48e37b74687ed49c23b68f5916c3a93320ae8499350fd45f17e79500a 9086 gbrowse_2.56+dfsg-8_armhf.buildinfo
Files:
5c8bde24a4b1cc8ba788a424a84737c3 30092 debug optional gbrowse-calign-dbgsym_2.56+dfsg-8_armhf.deb
ea78cd2da22de199ff507f11e3f63494 36040 science optional gbrowse-calign_2.56+dfsg-8_armhf.deb
09a800150fdef8d14d0cb66cb0a6c2c1 9086 science optional gbrowse_2.56+dfsg-8_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
gbrowse-calign-dbgsym_2.56+dfsg-8_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 30092 bytes: control archive=540 bytes.
398 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: gbrowse-calign-dbgsym
Source: gbrowse
Version: 2.56+dfsg-8
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 42
Depends: gbrowse-calign (= 2.56+dfsg-8)
Section: debug
Priority: optional
Description: debug symbols for gbrowse-calign
Build-Ids: 10d6f26bc2ecfae3fc562b23efc79504ba409292
drwxr-xr-x root/root 0 2020-02-16 11:19 ./
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/debug/.build-id/10/
-rw-r--r-- root/root 32200 2020-02-16 11:19 ./usr/lib/debug/.build-id/10/d6f26bc2ecfae3fc562b23efc79504ba409292.debug
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/share/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-02-16 11:19 ./usr/share/doc/gbrowse-calign-dbgsym -> gbrowse-calign
gbrowse-calign_2.56+dfsg-8_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 36040 bytes: control archive=948 bytes.
631 bytes, 17 lines control
663 bytes, 7 lines md5sums
Package: gbrowse-calign
Source: gbrowse
Version: 2.56+dfsg-8
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 76
Depends: perl (>= 5.30.0-9), perlapi-5.30.0, libc6 (>= 2.4), gbrowse
Section: science
Priority: optional
Homepage: http://gmod.org/wiki/GBrowse
Description: CAlign helper
Generic Genome Browser is a simple but highly
configurable web-based genome browser. It is a component of the
Generic Model Organism Systems Database project (GMOD).
.
This package provides the CAlign helper
for use with Realign. It speeds up Smith-Waterman alignment.
drwxr-xr-x root/root 0 2020-02-16 11:19 ./
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/Graphics/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/Graphics/Browser2/
-rw-r--r-- root/root 1129 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/Graphics/Browser2/CAlign.pm
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/Graphics/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/Graphics/Browser2/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/Graphics/Browser2/CAlign/
-rw-r--r-- root/root 0 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs
-rw-r--r-- root/root 9476 2020-02-16 11:19 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/Graphics/Browser2/CAlign/CAlign.so
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/share/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/share/doc/gbrowse-calign/
-rw-r--r-- root/root 2543 2020-02-16 11:19 ./usr/share/doc/gbrowse-calign/changelog.Debian.gz
-rw-r--r-- root/root 19608 2017-01-15 21:26 ./usr/share/doc/gbrowse-calign/changelog.gz
-rw-r--r-- root/root 17975 2020-02-16 11:19 ./usr/share/doc/gbrowse-calign/copyright
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/share/man/
drwxr-xr-x root/root 0 2020-02-16 11:19 ./usr/share/man/man3/
-rw-r--r-- root/root 2159 2020-02-16 11:19 ./usr/share/man/man3/Bio::Graphics::Browser2::CAlign.3pm.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 32352
Build-Time: 454
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1213
Job: gbrowse_2.56+dfsg-8
Machine Architecture: armhf
Package: gbrowse
Package-Time: 1767
Source-Version: 2.56+dfsg-8
Space: 32352
Status: successful
Version: 2.56+dfsg-8
--------------------------------------------------------------------------------
Finished at 2020-02-18T06:31:38Z
Build needed 00:29:27, 32352k disc space