gbrowse →
2.56+dfsg-11+b1 →
armhf → 2022-11-03 11:05:00
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| gbrowse 2.56+dfsg-11+b1 (armhf) Thu, 03 Nov 2022 10:36:08 +0000 |
+==============================================================================+
Package: gbrowse
Version: 2.56+dfsg-11+b1
Source Version: 2.56+dfsg-11
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-99c03897-4bae-455e-8e68-89f5f1b11598' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
Fetched 27.6 MB in 11s (2450 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'gbrowse' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/gbrowse.git
Please use:
git clone https://salsa.debian.org/med-team/gbrowse.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 4383 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main gbrowse 2.56+dfsg-11 (dsc) [2678 B]
Get:2 http://172.17.4.1/private bookworm-staging/main gbrowse 2.56+dfsg-11 (tar) [4356 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main gbrowse 2.56+dfsg-11 (diff) [24.1 kB]
Fetched 4383 kB in 0s (9135 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/gbrowse-qWWvkh/gbrowse-2.56+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gbrowse-qWWvkh' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-kbwQDX/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-kbwQDX/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-kbwQDX/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (5347 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 34 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (64.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: bioperl, debhelper-compat (= 13), dh-apache2, dh-exec, apache2-dev, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcapture-tiny-perl, libcgi-session-perl, libgd-gd2-perl | libgd-gd2-noxpm-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, libmodule-build-perl, libcgi-pm-perl, rename
Filtered Build-Depends: bioperl, debhelper-compat (= 13), dh-apache2, dh-exec, apache2-dev, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcapture-tiny-perl, libcgi-session-perl, libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, libmodule-build-perl, libcgi-pm-perl, rename
dpkg-deb: building package 'sbuild-build-depends-gbrowse-dummy' in '/<<BUILDDIR>>/resolver-kbwQDX/apt_archive/sbuild-build-depends-gbrowse-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-gbrowse-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ Sources [691 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ Packages [760 B]
Fetched 2784 B in 0s (12.9 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install gbrowse build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
apache2-bin apache2-dev autoconf automake autopoint autotools-dev bioperl
bsdextrautils ca-certificates debhelper dh-autoreconf dh-exec
dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base intltool-debian libabsl20210324
libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl
libanyevent-perl libaom3 libapache-dbi-perl libapache2-mod-perl2 libapr1
libapr1-dev libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-dev
libaprutil1-ldap libarchive-zip-perl libavif15 libbio-coordinate-perl
libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl
libbio-graphics-perl libbio-perl-perl libbrotli1 libbsd0
libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl
libclass-data-inheritable-perl libcommon-sense-perl libcurl4
libdata-stag-perl libdav1d6 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl
libde265-0 libdebhelper-perl libdeflate0 libdevel-stacktrace-perl
libdevel-symdump-perl libelf1 libencode-locale-perl libexception-class-perl
libexpat1 libexpat1-dev libexporter-tiny-perl libfile-listing-perl
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgav1-1
libgd-perl libgd3 libheif1 libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu71 libio-html-perl
libio-socket-ssl-perl libio-string-perl libjansson4 libjbig0 libjpeg62-turbo
libjs-prototype libjs-scriptaculous libjson-perl libldap-2.5-0 libldap-dev
libldap2-dev liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl
liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc
libmagic1 libmd0 libmodule-build-perl libmpdec3 libnet-http-perl
libnet-ssleay-perl libnghttp2-14 libpcre2-16-0 libpcre2-32-0 libpcre2-8-0
libpcre2-dev libpcre2-posix3 libpipeline1 libpng16-16 libpq5 libpsl5
libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librav1e0
libregexp-ipv6-perl librtmp1 libsctp-dev libsctp1 libssh2-1
libstatistics-descriptive-perl libstring-approx-perl libsub-override-perl
libsub-uplevel-perl libsvtav1enc1 libterm-readkey-perl libtest-deep-perl
libtest-differences-perl libtest-exception-perl libtest-most-perl
libtest-warn-perl libtext-diff-perl libtiff5 libtimedate-perl libtool
libtry-tiny-perl libuchardet0 liburi-perl libvm-ec2-perl libwebp7
libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6
libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl
libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4
libyuv0 m4 man-db media-types openssl perl-openssl-defaults po-debconf
python3 python3-minimal python3.10 python3.10-minimal rename sqlite3 ucf
uuid-dev
Suggested packages:
apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libev-perl libevent-perl
libio-async-perl libpoe-perl libtask-weaken-perl libxml-sax-expatxs-perl
libclone-perl libmldbm-perl libnet-daemon-perl libsql-statement-perl
libgd-tools libdata-dump-perl libcrypt-ssleay-perl lksctp-tools libtool-doc
gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl
libauthen-ntlm-perl m4-doc apparmor less libmail-box-perl python3-doc
python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support
sqlite3-doc
Recommended packages:
bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libyaml-perl
libace-perl libxml-twig-perl libset-scalar-perl curl | wget | lynx
libalgorithm-diff-xs-perl libasync-interrupt-perl libev-perl | libevent-perl
libguard-perl libapache2-reload-perl libbsd-resource-perl libbio-scf-perl
libberkeleydb-perl libgd-svg-perl bioperl-run | libbio-perl-run-perl
libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libgraph-perl
libgraphviz-perl libhtml-tableextract-perl libpostscript-perl
libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl
libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
libxml-dom-xpath-perl libxml-parser-perl libxml-sax-writer-perl
libxml-writer-perl libcgi-fast-perl libfreezethaw-perl perl-tk
libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl
libhtml-format-perl javascript-common libjson-xs-perl libldap-common
libmodule-signature-perl libpod-readme-perl libsoftware-license-perl
publicsuffix libltdl-dev libdata-dump-perl libhtml-form-perl
libmailtools-perl libxml-sax-expat-perl libmail-sendmail-perl
The following NEW packages will be installed:
apache2-bin apache2-dev autoconf automake autopoint autotools-dev bioperl
bsdextrautils ca-certificates debhelper dh-autoreconf dh-exec
dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base intltool-debian libabsl20210324
libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl
libanyevent-perl libaom3 libapache-dbi-perl libapache2-mod-perl2 libapr1
libapr1-dev libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-dev
libaprutil1-ldap libarchive-zip-perl libavif15 libbio-coordinate-perl
libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl
libbio-graphics-perl libbio-perl-perl libbrotli1 libbsd0
libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl
libclass-data-inheritable-perl libcommon-sense-perl libcurl4
libdata-stag-perl libdav1d6 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl
libde265-0 libdebhelper-perl libdeflate0 libdevel-stacktrace-perl
libdevel-symdump-perl libelf1 libencode-locale-perl libexception-class-perl
libexpat1 libexpat1-dev libexporter-tiny-perl libfile-listing-perl
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgav1-1
libgd-perl libgd3 libheif1 libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu71 libio-html-perl
libio-socket-ssl-perl libio-string-perl libjansson4 libjbig0 libjpeg62-turbo
libjs-prototype libjs-scriptaculous libjson-perl libldap-dev libldap2-dev
liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblua5.3-0
liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1
libmd0 libmodule-build-perl libmpdec3 libnet-http-perl libnet-ssleay-perl
libnghttp2-14 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpng16-16 libpq5 libpsl5 libpython3-stdlib
libpython3.10-minimal libpython3.10-stdlib librav1e0 libregexp-ipv6-perl
librtmp1 libsctp-dev libsctp1 libssh2-1 libstatistics-descriptive-perl
libstring-approx-perl libsub-override-perl libsub-uplevel-perl libsvtav1enc1
libterm-readkey-perl libtest-deep-perl libtest-differences-perl
libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl
libtiff5 libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl
libvm-ec2-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6
libx11-data libx265-199 libxau6 libxcb1 libxdmcp6 libxml-libxml-perl
libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
libxml-simple-perl libxml2 libxpm4 libyuv0 m4 man-db media-types openssl
perl-openssl-defaults po-debconf python3 python3-minimal python3.10
python3.10-minimal rename sbuild-build-depends-gbrowse-dummy sqlite3 ucf
uuid-dev
The following packages will be upgraded:
libldap-2.5-0 libpcre2-8-0
2 upgraded, 177 newly installed, 0 to remove and 32 not upgraded.
Need to get 50.9 MB of archives.
After this operation, 194 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kbwQDX/apt_archive ./ sbuild-build-depends-gbrowse-dummy 0.invalid.0 [1048 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.8-1 [768 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.8-1 [1476 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.8-1 [1597 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.8-1 [505 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-2+rpi1+b1 [155 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-2 [222 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1.1 [78.2 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.0-1 [1299 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.5-4 [1346 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libapr1 armhf 1.7.0-8 [87.2 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libaprutil1 armhf 1.6.1-5+b2 [81.3 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libaprutil1-dbd-sqlite3 armhf 1.6.1-5+b2 [17.8 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libaprutil1-ldap armhf 1.6.1-5+b2 [16.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.85.0-1 [325 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libjansson4 armhf 2.14-2 [37.0 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf liblua5.3-0 armhf 5.3.6-1 [99.3 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf apache2-bin armhf 2.4.54-3 [1170 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.10.1 [79.9 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.10.1 [940 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf uuid-dev armhf 2.38.1-1.1 [36.5 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libsctp1 armhf 1.0.19+dfsg-2 [29.1 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libsctp-dev armhf 1.0.19+dfsg-2 [71.5 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libapr1-dev armhf 1.7.0-8 [727 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libldap-dev armhf 2.5.13+dfsg-2+rpi1+b1 [259 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libldap2-dev all 2.5.13+dfsg-2+rpi1 [70.1 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libaprutil1-dev armhf 1.6.1-5+b2 [398 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-2 [208 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-2 [199 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-2 [53.2 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-2 [644 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf apache2-dev armhf 2.4.54-3 [300 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libio-string-perl all 1.08-3.1 [11.8 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libdata-stag-perl all 0.14-3 [448 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libbio-perl-perl all 1.7.8-1 [2603 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libexception-class-perl all 1.45-1 [34.6 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libtest-deep-perl all 1.130-2 [49.4 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libtext-diff-perl all 1.45-1 [27.7 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libtest-differences-perl all 0.69-1 [18.9 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libtest-exception-perl all 0.43-2 [19.1 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libtest-warn-perl all 0.37-1 [16.5 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libtest-most-perl all 0.38-1 [25.1 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf bioperl all 1.7.8-1 [246 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf dh-exec armhf 0.27 [26.8 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libabsl20210324 armhf 0~20210324.2-4+rpi1 [331 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libanyevent-perl armhf 7.170-2+b3 [394 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libanyevent-cachedns-perl all 0.08-3 [7708 B]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libcommon-sense-perl armhf 3.75-2+b2 [22.8 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libanyevent-http-perl all 2.25-2 [35.2 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libaom3 armhf 3.5.0-1 [1302 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libdevel-symdump-perl all 2.18-4 [17.5 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.16-1 [90.3 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libfile-listing-perl all 6.15-1 [12.6 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libhtml-tagset-perl all 3.20-6 [11.7 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libhtml-parser-perl armhf 3.79-1+b1 [97.4 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libhtml-tree-perl all 5.07-2 [213 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.41-1 [81.1 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf perl-openssl-defaults armhf 7+b1 [7916 B]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libnet-ssleay-perl armhf 1.92-2+b2 [297 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libio-socket-ssl-perl all 2.075-1 [220 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libnet-http-perl all 6.22-1 [25.3 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libwww-perl all 6.67-1 [194 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libapache2-mod-perl2 armhf 2.0.12-1+b3 [851 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libdbi-perl armhf 1.643-3+b3 [763 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libapache-dbi-perl all 1.12-2 [50.7 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libdav1d6 armhf 1.0.0-2+rpi1 [205 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libgav1-1 armhf 0.18.0-1+rpi1 [272 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf librav1e0 armhf 0.5.1-5 [525 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libsvtav1enc1 armhf 1.2.1+dfsg-1 [878 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libyuv0 armhf 0.0~git20221018.8084f0b-1 [79.9 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libavif15 armhf 0.11.1-1 [84.1 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libbio-coordinate-perl all 1.7.1-4 [56.7 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libcgi-pm-perl all 4.54-1 [224 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libbio-db-gff-perl all 1.7.4-1 [273 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libpq5 armhf 15.0-2 [160 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libdbd-pg-perl armhf 3.16.0-1+b1 [201 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libdbd-sqlite3-perl armhf 1.70-3+b2 [170 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libbio-db-seqfeature-perl all 1.7.4-1 [169 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.38-2 [273 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libde265-0 armhf 1.0.9-1+rpi1 [186 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libx265-199 armhf 3.5-2 [548 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libheif1 armhf 1.13.0-1 [169 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-5 [277 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libgd3 armhf 2.3.3-7 [102 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libgd-perl armhf 2.76-4+b1 [127 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libbio-graphics-perl all 2.40-6 [610 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libcgi-session-perl all 4.48-4 [118 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libexporter-tiny-perl all 1.004003-1 [39.0 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libhttp-daemon-perl all 6.14-2 [23.7 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libjs-prototype all 1.7.3-1 [44.3 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libjs-scriptaculous all 1.9.0-3 [110 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libjson-perl all 4.10000-1 [87.5 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf liblist-moreutils-xs-perl armhf 0.430-3+b1 [35.1 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf liblist-moreutils-perl all 0.430-2 [46.9 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libmodule-build-perl all 0.423100-2 [252 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libstatistics-descriptive-perl all 3.0800-1 [65.6 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libstring-approx-perl armhf 3.28-2+b1 [36.9 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libterm-readkey-perl armhf 2.38-2+b1 [23.4 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libxml-libxml-perl armhf 2.0207+dfsg+really+2.0134-1+b2 [305 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libxml-simple-perl all 2.25-1 [72.0 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libvm-ec2-perl all 1.28-4 [760 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf rename all 1.31-1 [22.1 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf sqlite3 armhf 3.39.4-1 [334 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libldap-2.5-0:armhf (2.5.13+dfsg-2+rpi1+b1) over (2.5.13+dfsg-2+rpi1) ...
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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl'
Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl'
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Setting up media-types (8.0.0) ...
Setting up libanyevent-perl (7.170-2+b3) ...
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Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up liblerc4:armhf (4.0.0+ds-2) ...
Setting up bsdextrautils (2.38.1-1.1) ...
Setting up libtest-deep-perl (1.130-2) ...
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Setting up libalgorithm-diff-perl (1.201-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libhtml-tagset-perl (3.20-6) ...
Setting up libdebhelper-perl (13.10.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.50.0-1) ...
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Setting up libpq5:armhf (15.0-2) ...
Setting up libdeflate0:armhf (1.14-1) ...
Setting up libapr1:armhf (1.7.0-8) ...
Setting up perl-openssl-defaults:armhf (7+b1) ...
Setting up libcommon-sense-perl:armhf (3.75-2+b2) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
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Setting up m4 (1.4.19-1) ...
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Setting up rename (1.31-1) ...
update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode
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Setting up libsvtav1enc1:armhf (1.2.1+dfsg-1) ...
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Setting up libldap-dev:armhf (2.5.13+dfsg-2+rpi1+b1) ...
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Setting up liblist-moreutils-xs-perl (0.430-3+b1) ...
Setting up libabsl20210324:armhf (0~20210324.2-4+rpi1) ...
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Setting up liblua5.3-0:armhf (5.3.6-1) ...
Setting up libjson-perl (4.10000-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
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Setting up libnet-ssleay-perl:armhf (1.92-2+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libhttp-date-perl (6.05-2) ...
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Setting up gettext (0.21-9) ...
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Setting up libpcre2-dev:armhf (10.40-2) ...
Setting up libtool (2.4.7-4) ...
Setting up fontconfig-config (2.13.1-4.5) ...
Setting up libjs-scriptaculous (1.9.0-3) ...
Setting up liblist-moreutils-perl (0.430-2) ...
Setting up libtest-warn-perl (0.37-1) ...
Setting up libheif1:armhf (1.13.0-1) ...
Setting up libtest-differences-perl (0.69-1) ...
Setting up libnet-http-perl (6.22-1) ...
Setting up libdbd-pg-perl:armhf (3.16.0-1+b1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libaprutil1-ldap:armhf (1.6.1-5+b2) ...
Setting up libaprutil1-dbd-sqlite3:armhf (1.6.1-5+b2) ...
Setting up libxml-sax-perl (1.02+dfsg-3) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libldap2-dev (2.5.13+dfsg-2+rpi1) ...
Setting up libpython3.10-stdlib:armhf (3.10.8-1) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up libtest-exception-perl (0.43-2) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-3) ...
Setting up libsctp-dev:armhf (1.0.19+dfsg-2) ...
Setting up libgav1-1:armhf (0.18.0-1+rpi1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-8) ...
Setting up libhtml-parser-perl:armhf (3.79-1+b1) ...
Setting up libcurl4:armhf (7.85.0-1) ...
Setting up libx11-6:armhf (2:1.8.1-2) ...
Setting up libdbd-sqlite3-perl:armhf (1.70-3+b2) ...
Setting up libio-socket-ssl-perl (2.075-1) ...
Setting up libpython3-stdlib:armhf (3.10.6-1) ...
Setting up libhttp-message-perl (6.41-1) ...
Setting up libhttp-negotiate-perl (6.01-1) ...
Setting up libstatistics-descriptive-perl (3.0800-1) ...
Setting up python3.10 (3.10.8-1) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libavif15:armhf (0.11.1-1) ...
Setting up libhttp-cookies-perl (6.10-1) ...
Setting up libtest-most-perl (0.38-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-2) ...
Setting up libcgi-pm-perl (4.54-1) ...
Setting up python3 (3.10.6-1) ...
Setting up apache2-bin (2.4.54-3) ...
Setting up man-db (2.11.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcgi-session-perl (4.48-4) ...
Setting up libapr1-dev (1.7.0-8) ...
Setting up libxml-simple-perl (2.25-1) ...
Setting up libhttp-daemon-perl (6.14-2) ...
Setting up libaprutil1-dev (1.6.1-5+b2) ...
Setting up bioperl (1.7.8-1) ...
Setting up debhelper (13.10.1) ...
Setting up dh-exec (0.27) ...
Setting up libbio-coordinate-perl (1.7.1-4) ...
Setting up apache2-dev (2.4.54-3) ...
Setting up libwww-perl (6.67-1) ...
Setting up libapache2-mod-perl2 (2.0.12-1+b3) ...
Setting up libbio-db-biofetch-perl (1.7.3-4) ...
Setting up liblwp-protocol-https-perl (6.10-1) ...
Setting up libvm-ec2-perl (1.28-4) ...
Setting up libapache-dbi-perl (1.12-2) ...
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Setting up libbio-db-seqfeature-perl (1.7.4-1) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up libgd3:armhf (2.3.3-7) ...
Setting up libgd-perl (2.76-4+b1) ...
Setting up libbio-graphics-perl (2.40-6) ...
Setting up sbuild-build-depends-gbrowse-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apache2-bin_2.4.54-3 apache2-dev_2.4.54-3 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bioperl_1.7.8-1 bsdextrautils_2.38.1-1.1 bsdutils_1:2.38.1-1.1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 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libaudit1_1:3.0.7-1.1 libavif15_0.11.1-1 libbinutils_2.39-6+rpi1 libbio-coordinate-perl_1.7.1-4 libbio-db-biofetch-perl_1.7.3-4 libbio-db-gff-perl_1.7.4-1 libbio-db-seqfeature-perl_1.7.4-1 libbio-graphics-perl_2.40-6 libbio-perl-perl_1.7.8-1 libblkid1_2.38.1-1.1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcapture-tiny-perl_0.48-1 libcc1-0_12.2.0-3+rpi1 libcgi-pm-perl_4.54-1 libcgi-session-perl_4.48-4 libclass-data-inheritable-perl_0.08-3 libcom-err2_1.46.6~rc1-1 libcommon-sense-perl_3.75-2+b2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libcurl4_7.85.0-1 libdata-stag-perl_0.14-3 libdav1d6_1.0.0-2+rpi1 libdb5.3_5.3.28+dfsg1-0.10 libdbd-pg-perl_3.16.0-1+b1 libdbd-sqlite3-perl_1.70-3+b2 libdbi-perl_1.643-3+b3 libde265-0_1.0.9-1+rpi1 libdebconfclient0_0.264 libdebhelper-perl_13.10.1 libdeflate0_1.14-1 libdevel-stacktrace-perl_2.0400-1 libdevel-symdump-perl_2.18-4 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1 libexpat1_2.5.0-1 libexpat1-dev_2.5.0-1 libexporter-tiny-perl_1.004003-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-listing-perl_6.15-1 libfile-stripnondeterminism-perl_1.13.0-1 libfontconfig1_2.13.1-4.5 libfreetype6_2.12.1+dfsg-3 libgav1-1_0.18.0-1+rpi1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgd-perl_2.76-4+b1 libgd3_2.3.3-7 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libheif1_1.13.0-1 libhogweed6_3.8.1-2 libhtml-parser-perl_3.79-1+b1 libhtml-tagset-perl_3.20-6 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.10-1 libhttp-daemon-perl_6.14-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.41-1 libhttp-negotiate-perl_6.01-1 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.075-1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libjansson4_2.14-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libjs-prototype_1.7.3-1 libjs-scriptaculous_1.9.0-3 libjson-perl_4.10000-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.5-0_2.5.13+dfsg-2+rpi1+b1 libldap-dev_2.5.13+dfsg-2+rpi1+b1 libldap2-dev_2.5.13+dfsg-2+rpi1 liblerc4_4.0.0+ds-2 liblist-moreutils-perl_0.430-2 liblist-moreutils-xs-perl_0.430-3+b1 liblua5.3-0_5.3.6-1 liblwp-mediatypes-perl_6.04-1 liblwp-protocol-https-perl_6.10-1 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmodule-build-perl_0.423100-2 libmount1_2.38.1-1.1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnet-http-perl_6.22-1 libnet-ssleay-perl_1.92-2+b2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-16-0_10.40-2 libpcre2-32-0_10.40-2 libpcre2-8-0_10.40-2 libpcre2-dev_10.40-2 libpcre2-posix3_10.40-2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.6-3 libpng16-16_1.6.38-2 libpq5_15.0-2 libpsl5_0.21.0-1.2 libpython3-stdlib_3.10.6-1 libpython3.10-minimal_3.10.8-1 libpython3.10-stdlib_3.10.8-1 librav1e0_0.5.1-5 libreadline8_8.2-1 libregexp-ipv6-perl_0.03-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libsctp-dev_1.0.19+dfsg-2 libsctp1_1.0.19+dfsg-2 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-1.1 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstatistics-descriptive-perl_3.0800-1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libstring-approx-perl_3.28-2+b1 libsub-override-perl_0.09-4 libsub-uplevel-perl_0.2800-3 libsvtav1enc1_1.2.1+dfsg-1 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libterm-readkey-perl_2.38-2+b1 libtest-deep-perl_1.130-2 libtest-differences-perl_0.69-1 libtest-exception-perl_0.43-2 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-1 libtext-diff-perl_1.45-1 libtiff5_4.4.0-5 libtimedate-perl_2.3300-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtry-tiny-perl_0.31-2 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 liburi-perl_5.16-1 libuuid1_2.38.1-1.1 libvm-ec2-perl_1.28-4 libwebp7_1.2.2-2 libwww-perl_6.67-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libx265-199_3.5-2 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b2 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1 libxpm4_1:3.5.12-1 libxxhash0_0.8.1-1 libyuv0_0.0~git20221018.8084f0b-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-1.1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.5-4 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 perl-openssl-defaults_7+b1 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 python3_3.10.6-1 python3-minimal_3.10.6-1 python3.10_3.10.8-1 python3.10-minimal_3.10.8-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rename_1.31-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gbrowse-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sqlite3_3.39.4-1 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 ucf_3.0043 util-linux_2.38.1-1.1 util-linux-extra_2.38.1-1.1 uuid-dev_2.38.1-1.1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.sQVjuhEn/trustedkeys.kbx': General error
gpgv: Signature made Fri Sep 30 09:31:20 2022 UTC
gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438
gpgv: issuer "osallou@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./gbrowse_2.56+dfsg-11.dsc
dpkg-source: info: extracting gbrowse in /<<BUILDDIR>>/gbrowse-2.56+dfsg
dpkg-source: info: unpacking gbrowse_2.56+dfsg.orig.tar.gz
dpkg-source: info: unpacking gbrowse_2.56+dfsg-11.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying debian-packaging-patch
dpkg-source: info: applying gbrowse-slave-fix_defaults_path
dpkg-source: info: applying manpages.patch
dpkg-source: info: applying fix_pop_url
dpkg-source: info: applying skip_check_installed_test.patch
dpkg-source: info: applying source_init_functions
dpkg-source: info: applying init_script_dependency.patch
dpkg-source: info: applying fix_runlevel.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying fix_whatis_entry.patch
dpkg-source: info: applying remove_copy_of_LoadHelper.pm.patch
dpkg-source: info: applying fix_gd2_deprecation
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.56+dfsg-11+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-99c03897-4bae-455e-8e68-89f5f1b11598
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package gbrowse
dpkg-buildpackage: info: source version 2.56+dfsg-11+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with apache2
dh_clean
debian/rules binary-arch
dh binary-arch --with apache2
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_auto_configure -- --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse
/usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -ffile-prefix-map=/<<BUILDDIR>>/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse
WARNING: the following files are missing in your kit:
contrib/ace2gff.pl
contrib/AxtPairwise_convert/axt2phy.pl
contrib/blast2gff.pl
contrib/conf_files/01.yeast.conf
contrib/conf_files/02.wormbase.conf
contrib/conf_files/03.fly.conf
contrib/conf_files/04.human.conf
contrib/conf_files/05.embl_proxy.conf
contrib/conf_files/06.biosql.conf
contrib/conf_files/07.chado.conf
contrib/conf_files/08.genbank.conf
contrib/conf_files/09.human_karyotype.conf
contrib/conf_files/index.html
contrib/conf_files/wormbase.syn
contrib/Coverage/INSTALL
contrib/Coverage/plugin/Coverage.pm
contrib/Coverage/README
contrib/gdump.pl
contrib/GeneFinder/genefinder/gfcode.c
contrib/GeneFinder/genefinder/README
contrib/GeneFinder/genefinder/readseq.c
contrib/GeneFinder/genefinder/readseq.h
contrib/GeneFinder/nematode_gftables/cds.hex
contrib/GeneFinder/nematode_gftables/gftables
contrib/GeneFinder/nematode_gftables/newnem.atg
contrib/GeneFinder/nematode_gftables/newnem.codon
contrib/GeneFinder/nematode_gftables/newnem.gene
contrib/GeneFinder/nematode_gftables/newnem.intron3
contrib/GeneFinder/nematode_gftables/newnem.intron5
contrib/GeneFinder/nematode_gftables/ref.hist
contrib/GeneFinder/nematode_gftables/zk637.atg
contrib/GeneFinder/nematode_gftables/zk637.intron3
contrib/GeneFinder/nematode_gftables/zk637.intron5
contrib/GeneFinder/nematode_gftables/zk637.trinuc
contrib/import_ncbi_mv_hs.pl
contrib/install_macosx/BuildConfig.pm
contrib/install_macosx/README.html
contrib/install_macosx/README.pod
contrib/install_macosx/scripts/build-gbrowse.pl
contrib/install_macosx/scripts/build-libraries.pl
contrib/README
contrib/SynView/cgi-lib/DAS/GUS.pm
contrib/SynView/cgi-lib/DAS/GUS/Segment.pm
contrib/SynView/cgi-lib/DAS/GUS/Segment/Feature.pm
contrib/SynView/cgi-lib/DAS/Util/SqlParser.pm
contrib/SynView/gbrowse.conf/plasmodb.conf
contrib/SynView/gbrowse.conf/plasmodb.xml
contrib/SynView/MAL11/MAL11.conf
contrib/SynView/MAL11/MAL11.fa
contrib/SynView/MAL11/MAL11.gff3
contrib/SynView/README
contrib/TextDumper/README
contrib/TextDumper/TextDumper.pm
lib/Bio/DB/SeqFeature/Store/LoadHelper.pm
Please inform the author.
Checking prerequisites...
recommends:
* Bio::DB::BigFile is not installed
* Bio::DB::Sam is not installed
* Bio::Das is not installed
* Crypt::SSLeay is not installed
* DBD::mysql is not installed
* DB_File::Lock is not installed
* FCGI is not installed
* File::NFSLock is not installed
* GD::SVG is not installed
* Net::OpenID::Consumer is not installed
* Net::SMTP::SSL is not installed
* Parse::Apache::ServerStatus is not installed
* Template is not installed
* Do not worry if some "recommended" prerequisites are missing. You can install *
* them later if you need the features they provide. Do not proceed with the *
* install if any of "REQUIRED" prerequisites are missing. *
* *
* The optional Safe::World module does not currently run on Perl 5.10 or *
* higher, and so cannot be installed. *
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
Run 'Build installdeps' to install missing prerequisites.
**** WARNING *****************************************************************************************
If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please
set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to
create/update your user account database.
See /etc/gbrowse2/GBrowse.conf.new for suggested settings.
******************************************************************************************************
Now run:
./Build test
./Build demo (optional)
./Build install (as superuser/administrator)
-or-
./Build install_slave (optional, for slave installations)
Other useful targets:
./Build register (to register your copy of GBrowse)
./Build reconfig (to reconfigure install locations)
./Build demostop (to stop the demo)
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'GBrowse' version '2.56'
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_auto_build -a
/usr/bin/perl Build
NOTE: Run ./Build reconfig to change existing configuration.
Building GBrowse
arm-linux-gnueabihf-gcc -I/<<BUILDDIR>>/gbrowse-2.56+dfsg/libalign -I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE -DVERSION="2.56" -DXS_VERSION="2.56" -fPIC -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/Graphics/Browser2/CAlign.o lib/Bio/Graphics/Browser2/CAlign.c
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs')
arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.so lib/Bio/Graphics/Browser2/CAlign.o
Performing variable substitutions in blib/conf/aws_balancer.conf
Performing variable substitutions in blib/conf/detail_select_menu.conf
Performing variable substitutions in blib/conf/enzymes.txt
Performing variable substitutions in blib/conf/GBrowse.conf
Performing variable substitutions in blib/conf/log4perl.conf
Performing variable substitutions in blib/conf/MobyServices/moby.conf
Performing variable substitutions in blib/conf/pop_demo.conf
Performing variable substitutions in blib/conf/renderfarm.conf
Performing variable substitutions in blib/conf/slave_preload.conf
Performing variable substitutions in blib/conf/submitter_plugin.conf
Performing variable substitutions in blib/conf/synteny/oryza.synconf.disabled.conf
Performing variable substitutions in blib/conf/synteny/rice_synteny.conf
Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf
Performing variable substitutions in blib/conf/themes/solid_gray_colors
Performing variable substitutions in blib/conf/themes/transparent_colors
Performing variable substitutions in blib/conf/themes/warm_colors
Performing variable substitutions in blib/conf/volvox.conf
Performing variable substitutions in blib/conf/yeast_chr1+2.conf
Performing variable substitutions in blib/conf/yeast_renderfarm.conf
Performing variable substitutions in blib/conf/yeast_simple.conf
Performing variable substitutions in blib/htdocs/annotation_help.html
Performing variable substitutions in blib/htdocs/cloud_index.html
Performing variable substitutions in blib/htdocs/example_scripts/index.html
Performing variable substitutions in blib/htdocs/example_scripts/README
Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html
Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html
Performing variable substitutions in blib/htdocs/general_help.html
Performing variable substitutions in blib/htdocs/index.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf
Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html
Performing variable substitutions in blib/htdocs/vbox_index.html
Use of uninitialized value in pattern match (m//) at /<<BUILDDIR>>/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 778.
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_auto_test -- TEST_FILES="t/00.compile.t t/01.yeast.t t/02.rearchitecture.t t/05.deferredrendering.t t/07.balancer.t t/08.calign.t"
/usr/bin/perl Build test --verbose 1 "TEST_FILES=t/00.compile.t t/01.yeast.t t/02.rearchitecture.t t/05.deferredrendering.t t/07.balancer.t t/08.calign.t"
NOTE: Run ./Build reconfig to change existing configuration.
Use of uninitialized value in pattern match (m//) at /<<BUILDDIR>>/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 778.
t/00.compile.t ............
ok 1 - cgi-bin/das compiled ok
ok 2 - cgi-bin/das stderr said "syntax OK"
ok 3 - cgi-bin/das nothing on stdout
ok 4 - cgi-bin/gbgff compiled ok
ok 5 - cgi-bin/gbgff stderr said "syntax OK"
ok 6 - cgi-bin/gbgff nothing on stdout
ok 7 - cgi-bin/gbrowse compiled ok
ok 8 - cgi-bin/gbrowse stderr said "syntax OK"
ok 9 - cgi-bin/gbrowse nothing on stdout
ok 10 - cgi-bin/gbrowse_details compiled ok
ok 11 - cgi-bin/gbrowse_details stderr said "syntax OK"
ok 12 - cgi-bin/gbrowse_details nothing on stdout
ok 13 # skip explicitly skipping cgi-bin/gbrowse_gmap
ok 14 - cgi-bin/gbrowse_img compiled ok
ok 15 - cgi-bin/gbrowse_img stderr said "syntax OK"
ok 16 - cgi-bin/gbrowse_img nothing on stdout
ok 17 - cgi-bin/gbrowse_key_img compiled ok
ok 18 - cgi-bin/gbrowse_key_img stderr said "syntax OK"
ok 19 - cgi-bin/gbrowse_key_img nothing on stdout
ok 20 - cgi-bin/gbrowse_login compiled ok
ok 21 - cgi-bin/gbrowse_login stderr said "syntax OK"
ok 22 - cgi-bin/gbrowse_login nothing on stdout
ok 23 - cgi-bin/gbrowse_syn compiled ok
ok 24 - cgi-bin/gbrowse_syn stderr said "syntax OK"
ok 25 - cgi-bin/gbrowse_syn nothing on stdout
ok 26 - bin/auto_install_databases.pl compiled ok
ok 27 - bin/auto_install_databases.pl stderr said "syntax OK"
ok 28 - bin/auto_install_databases.pl nothing on stdout
ok 29 - bin/bed2gff3.pl compiled ok
ok 30 - bin/bed2gff3.pl stderr said "syntax OK"
ok 31 - bin/bed2gff3.pl nothing on stdout
ok 32 - bin/bp_load_gff.pl compiled ok
ok 33 - bin/bp_load_gff.pl stderr said "syntax OK"
ok 34 - bin/bp_load_gff.pl nothing on stdout
ok 35 # skip explicitly skipping bin/gbrowse_aws_balancer.pl
ok 36 - bin/gbrowse_change_passwd.pl compiled ok
ok 37 - bin/gbrowse_change_passwd.pl stderr said "syntax OK"
ok 38 - bin/gbrowse_change_passwd.pl nothing on stdout
ok 39 - bin/gbrowse_clean.pl compiled ok
ok 40 - bin/gbrowse_clean.pl stderr said "syntax OK"
ok 41 - bin/gbrowse_clean.pl nothing on stdout
ok 42 - bin/gbrowse_configure_slaves.pl compiled ok
ok 43 - bin/gbrowse_configure_slaves.pl stderr said "syntax OK"
ok 44 - bin/gbrowse_configure_slaves.pl nothing on stdout
ok 45 - bin/gbrowse_create_account.pl compiled ok
ok 46 - bin/gbrowse_create_account.pl stderr said "syntax OK"
ok 47 - bin/gbrowse_create_account.pl nothing on stdout
ok 48 # skip explicitly skipping bin/gbrowse_grow_cloud_vol.pl
ok 49 - bin/gbrowse_import_ucsc_db.pl compiled ok
ok 50 - bin/gbrowse_import_ucsc_db.pl stderr said "syntax OK"
ok 51 - bin/gbrowse_import_ucsc_db.pl nothing on stdout
ok 52 - bin/gbrowse_metadb_config.pl compiled ok
ok 53 - bin/gbrowse_metadb_config.pl stderr said "syntax OK"
ok 54 - bin/gbrowse_metadb_config.pl nothing on stdout
ok 55 # skip explicitly skipping bin/gbrowse_netinstall.pl
ok 56 # skip explicitly skipping bin/gbrowse_netinstall2.pl
ok 57 - bin/gbrowse_set_admin_passwd.pl compiled ok
ok 58 - bin/gbrowse_set_admin_passwd.pl stderr said "syntax OK"
ok 59 - bin/gbrowse_set_admin_passwd.pl nothing on stdout
ok 60 - bin/gbrowse_slave compiled ok
ok 61 - bin/gbrowse_slave stderr said "syntax OK"
ok 62 - bin/gbrowse_slave nothing on stdout
ok 63 # skip explicitly skipping bin/gbrowse_slave_start_aws.sh
ok 64 - bin/gbrowse_syn_load_alignment_database.pl compiled ok
ok 65 - bin/gbrowse_syn_load_alignment_database.pl stderr said "syntax OK"
ok 66 - bin/gbrowse_syn_load_alignment_database.pl nothing on stdout
ok 67 - bin/gbrowse_syn_load_alignments_msa.pl compiled ok
ok 68 - bin/gbrowse_syn_load_alignments_msa.pl stderr said "syntax OK"
ok 69 - bin/gbrowse_syn_load_alignments_msa.pl nothing on stdout
ok 70 # skip explicitly skipping bin/gbrowse_sync_aws_slave.pl
ok 71 - bin/gtf2gff3.pl compiled ok
ok 72 - bin/gtf2gff3.pl stderr said "syntax OK"
ok 73 - bin/gtf2gff3.pl nothing on stdout
ok 74 - bin/load_genbank.pl compiled ok
ok 75 - bin/load_genbank.pl stderr said "syntax OK"
ok 76 - bin/load_genbank.pl nothing on stdout
ok 77 # skip explicitly skipping bin/make_das_conf.pl
ok 78 - bin/process_bamfiles.pl compiled ok
ok 79 - bin/process_bamfiles.pl stderr said "syntax OK"
ok 80 - bin/process_bamfiles.pl nothing on stdout
ok 81 - bin/process_gadfly.pl compiled ok
ok 82 - bin/process_gadfly.pl stderr said "syntax OK"
ok 83 - bin/process_gadfly.pl nothing on stdout
ok 84 - bin/process_ncbi_human.pl compiled ok
ok 85 - bin/process_ncbi_human.pl stderr said "syntax OK"
ok 86 - bin/process_ncbi_human.pl nothing on stdout
ok 87 - bin/process_sgd.pl compiled ok
ok 88 - bin/process_sgd.pl stderr said "syntax OK"
ok 89 - bin/process_sgd.pl nothing on stdout
ok 90 - bin/report_missing_language_tags.pl compiled ok
ok 91 - bin/report_missing_language_tags.pl stderr said "syntax OK"
ok 92 - bin/report_missing_language_tags.pl nothing on stdout
ok 93 - bin/scan_gbrowse.pl compiled ok
ok 94 - bin/scan_gbrowse.pl stderr said "syntax OK"
ok 95 - bin/scan_gbrowse.pl nothing on stdout
ok 96 - bin/split_wig.pl compiled ok
ok 97 - bin/split_wig.pl stderr said "syntax OK"
ok 98 - bin/split_wig.pl nothing on stdout
ok 99 - bin/ucsc_genes2gff.pl compiled ok
ok 100 - bin/ucsc_genes2gff.pl stderr said "syntax OK"
ok 101 - bin/ucsc_genes2gff.pl nothing on stdout
ok 102 - bin/wiggle2gff3.pl compiled ok
ok 103 - bin/wiggle2gff3.pl stderr said "syntax OK"
ok 104 - bin/wiggle2gff3.pl nothing on stdout
1..104
ok
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
t/01.yeast.t ..............
1..7
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok
t/02.rearchitecture.t .....
1..90
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ok 2
ok 3
ok 4
ok 5
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ok 7
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ok 77
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ok 85
ok 86
ok 87
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ok 89
ok 90
ok
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value $_[5] in pack at /usr/share/perl5/Bio/DB/IndexedBase.pm line 1005, <GEN171> line 2.
Use of uninitialized value $_[5] in pack at /usr/share/perl5/Bio/DB/IndexedBase.pm line 1005, <GEN176> line 2.
t/03.render.t .............
1..150
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ok
Sometimes this test gets 'stuck'. If this happens, kill the test and Build test again.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
(in cleanup) Error in tempdir() using /tmp/gbrowse_testing/XXXXXXXXXX: Parent directory (/tmp/gbrowse_testing) does not exist at /usr/share/perl5/Bio/DB/SeqFeature/Store/memory.pm line 704.
(in cleanup) Error in tempdir() using /tmp/gbrowse_testing/XXXXXXXXXX: Parent directory (/tmp/gbrowse_testing) does not exist at /usr/share/perl5/Bio/DB/SeqFeature/Store/memory.pm line 704.
Could not open database: Can't call method "seq" on an undefined value at /usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm line 173, <GEN4> line 21.
Could not open database: Can't call method "seq" on an undefined value at /usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm line 173, <GEN3> line 19.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
t/04.remoteserver.t .......
1..43
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ok
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
t/05.deferredrendering.t ..
1..19
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ok
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778.
Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781.
t/06.featuresearch.t ......
1..26
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ok
t/07.balancer.t ........... skipped: Optional module Parse::Apache::ServerStatus not installed
t/07.karyotype.t ..........
1..3
ok 1
ok 2
ok 3
ok
t/08.calign.t .............
1..6
# Running under perl version 5.036000 for linux
# Current time local: Thu Nov 3 11:04:45 2022
# Current time GMT: Thu Nov 3 11:04:45 2022
# Using Test.pm version 1.31
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ok
All tests successful.
Files=10, Tests=448, 91 wallclock secs ( 0.16 usr 0.04 sys + 34.78 cusr 7.82 csys = 42.80 CPU)
Result: PASS
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_installdirs
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
# svn(-buildpackage) seems to ignore the x bit
chmod +x debian/gbrowse-calign.dirs
dh_installdirs
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
./Build --install_base=debian/gbrowse debianinstall
NOTE: Run ./Build reconfig to change existing configuration.
Use of uninitialized value in pattern match (m//) at /<<BUILDDIR>>/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 778.
Building GBrowse
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.so
Installing debian/gbrowse/man/man1/bed2gff3.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_aws_balancer.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_clean.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_grow_cloud_vol.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_sync_aws_slave.pl.1p
Installing debian/gbrowse/man/man1/gtf2gff3.pl.1p
Installing debian/gbrowse/man/man1/load_genbank.pl.1p
Installing debian/gbrowse/man/man1/make_das_conf.pl.1p
Installing debian/gbrowse/man/man1/ucsc_genes2gff.pl.1p
Installing debian/gbrowse/man/man1/wiggle2gff3.pl.1p
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/das
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbgff
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_details
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_gmap
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_img
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_key_img
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_login
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_syn
Installing debian/gbrowse/etc/gbrowse/aws_balancer.conf
Installing debian/gbrowse/etc/gbrowse/detail_select_menu.conf
Installing debian/gbrowse/etc/gbrowse/enzymes.txt
Installing debian/gbrowse/etc/gbrowse/GBrowse.conf
Installing debian/gbrowse/etc/gbrowse/log4perl.conf
Installing debian/gbrowse/etc/gbrowse/pop_demo.conf
Installing debian/gbrowse/etc/gbrowse/renderfarm.conf
Installing debian/gbrowse/etc/gbrowse/slave_preload.conf
Installing debian/gbrowse/etc/gbrowse/submitter_plugin.conf
Installing debian/gbrowse/etc/gbrowse/volvox.conf
Installing debian/gbrowse/etc/gbrowse/yeast_chr1+2.conf
Installing debian/gbrowse/etc/gbrowse/yeast_renderfarm.conf
Installing debian/gbrowse/etc/gbrowse/yeast_simple.conf
Installing debian/gbrowse/etc/gbrowse/languages/de.pm
Installing debian/gbrowse/etc/gbrowse/languages/en.pm
Installing debian/gbrowse/etc/gbrowse/languages/es.pm
Installing debian/gbrowse/etc/gbrowse/languages/fr.pm
Installing debian/gbrowse/etc/gbrowse/languages/is.pm
Installing debian/gbrowse/etc/gbrowse/languages/it.pm
Installing debian/gbrowse/etc/gbrowse/languages/ja.pm
Installing debian/gbrowse/etc/gbrowse/languages/ko.pm
Installing debian/gbrowse/etc/gbrowse/languages/nl.pm
Installing debian/gbrowse/etc/gbrowse/languages/pl.pm
Installing debian/gbrowse/etc/gbrowse/languages/POSIX.pm
Installing debian/gbrowse/etc/gbrowse/languages/ru.pm
Installing debian/gbrowse/etc/gbrowse/languages/zh.pm
Installing debian/gbrowse/etc/gbrowse/languages/zh_cn.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_gif_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_jpeg_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.PMS
Installing debian/gbrowse/etc/gbrowse/MobyServices/moby.conf
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Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataBase.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataLoader::archive.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataLoader::useq.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataSource.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::GFFhelper.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Markup.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::OptionPick.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin::AuthPlugin.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PluginSet.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Realign.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Region.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RegionSearch.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render::Slave::Status.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Util.3pm
Installing debian/gbrowse/man/man3/CGI::Toggle.3pm
Installing debian/gbrowse/man/man3/GBrowse::ConfigData.3pm
Installing debian/gbrowse/man/man3/Legacy::Graphics::Browser.3pm
Installing debian/gbrowse/bin/bed2gff3.pl
Installing debian/gbrowse/bin/gbrowse_aws_balancer.pl
Installing debian/gbrowse/bin/gbrowse_change_passwd.pl
Installing debian/gbrowse/bin/gbrowse_clean.pl
Installing debian/gbrowse/bin/gbrowse_configure_slaves.pl
Installing debian/gbrowse/bin/gbrowse_create_account.pl
Installing debian/gbrowse/bin/gbrowse_grow_cloud_vol.pl
Installing debian/gbrowse/bin/gbrowse_import_ucsc_db.pl
Installing debian/gbrowse/bin/gbrowse_metadb_config.pl
Installing debian/gbrowse/bin/gbrowse_set_admin_passwd.pl
Installing debian/gbrowse/bin/gbrowse_slave
Installing debian/gbrowse/bin/gbrowse_syn_load_alignment_database.pl
Installing debian/gbrowse/bin/gbrowse_syn_load_alignments_msa.pl
Installing debian/gbrowse/bin/gbrowse_sync_aws_slave.pl
Installing debian/gbrowse/bin/gtf2gff3.pl
Installing debian/gbrowse/bin/load_genbank.pl
Installing debian/gbrowse/bin/make_das_conf.pl
Installing debian/gbrowse/bin/scan_gbrowse.pl
Installing debian/gbrowse/bin/ucsc_genes2gff.pl
Installing debian/gbrowse/bin/wiggle2gff3.pl
#./Build apache_conf > debian/gbrowse/etc/gbrowse/gbrowse_apache2.conf
perl Build.PL --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse --installetc=y
WARNING: the following files are missing in your kit:
contrib/ace2gff.pl
contrib/AxtPairwise_convert/axt2phy.pl
contrib/blast2gff.pl
contrib/conf_files/01.yeast.conf
contrib/conf_files/02.wormbase.conf
contrib/conf_files/03.fly.conf
contrib/conf_files/04.human.conf
contrib/conf_files/05.embl_proxy.conf
contrib/conf_files/06.biosql.conf
contrib/conf_files/07.chado.conf
contrib/conf_files/08.genbank.conf
contrib/conf_files/09.human_karyotype.conf
contrib/conf_files/index.html
contrib/conf_files/wormbase.syn
contrib/Coverage/INSTALL
contrib/Coverage/plugin/Coverage.pm
contrib/Coverage/README
contrib/gdump.pl
contrib/GeneFinder/genefinder/gfcode.c
contrib/GeneFinder/genefinder/README
contrib/GeneFinder/genefinder/readseq.c
contrib/GeneFinder/genefinder/readseq.h
contrib/GeneFinder/nematode_gftables/cds.hex
contrib/GeneFinder/nematode_gftables/gftables
contrib/GeneFinder/nematode_gftables/newnem.atg
contrib/GeneFinder/nematode_gftables/newnem.codon
contrib/GeneFinder/nematode_gftables/newnem.gene
contrib/GeneFinder/nematode_gftables/newnem.intron3
contrib/GeneFinder/nematode_gftables/newnem.intron5
contrib/GeneFinder/nematode_gftables/ref.hist
contrib/GeneFinder/nematode_gftables/zk637.atg
contrib/GeneFinder/nematode_gftables/zk637.intron3
contrib/GeneFinder/nematode_gftables/zk637.intron5
contrib/GeneFinder/nematode_gftables/zk637.trinuc
contrib/import_ncbi_mv_hs.pl
contrib/install_macosx/BuildConfig.pm
contrib/install_macosx/README.html
contrib/install_macosx/README.pod
contrib/install_macosx/scripts/build-gbrowse.pl
contrib/install_macosx/scripts/build-libraries.pl
contrib/README
contrib/SynView/cgi-lib/DAS/GUS.pm
contrib/SynView/cgi-lib/DAS/GUS/Segment.pm
contrib/SynView/cgi-lib/DAS/GUS/Segment/Feature.pm
contrib/SynView/cgi-lib/DAS/Util/SqlParser.pm
contrib/SynView/gbrowse.conf/plasmodb.conf
contrib/SynView/gbrowse.conf/plasmodb.xml
contrib/SynView/MAL11/MAL11.conf
contrib/SynView/MAL11/MAL11.fa
contrib/SynView/MAL11/MAL11.gff3
contrib/SynView/README
contrib/TextDumper/README
contrib/TextDumper/TextDumper.pm
lib/Bio/DB/SeqFeature/Store/LoadHelper.pm
Please inform the author.
Checking prerequisites...
recommends:
* Bio::DB::BigFile is not installed
* Bio::DB::Sam is not installed
* Bio::Das is not installed
* Crypt::SSLeay is not installed
* DBD::mysql is not installed
* DB_File::Lock is not installed
* FCGI is not installed
* File::NFSLock is not installed
* GD::SVG is not installed
* Net::OpenID::Consumer is not installed
* Net::SMTP::SSL is not installed
* Parse::Apache::ServerStatus is not installed
* Template is not installed
* Do not worry if some "recommended" prerequisites are missing. You can install *
* them later if you need the features they provide. Do not proceed with the *
* install if any of "REQUIRED" prerequisites are missing. *
* *
* The optional Safe::World module does not currently run on Perl 5.10 or *
* higher, and so cannot be installed. *
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
Run 'Build installdeps' to install missing prerequisites.
**** WARNING *****************************************************************************************
If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please
set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to
create/update your user account database.
See /etc/gbrowse2/GBrowse.conf.new for suggested settings.
******************************************************************************************************
NOTE: Run ./Build reconfig to change existing configuration.
Now run:
./Build test
./Build demo (optional)
./Build install (as superuser/administrator)
-or-
./Build install_slave (optional, for slave installations)
Other useful targets:
./Build register (to register your copy of GBrowse)
./Build reconfig (to reconfigure install locations)
./Build demostop (to stop the demo)
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'GBrowse' version '2.56'
./Build --install_base=debian/gbrowse install_slave
NOTE: Run ./Build reconfig to change existing configuration.
Performing variable substitutions in blib/conf/aws_balancer.conf
Performing variable substitutions in blib/conf/detail_select_menu.conf
Performing variable substitutions in blib/conf/enzymes.txt
Performing variable substitutions in blib/conf/GBrowse.conf
Performing variable substitutions in blib/conf/log4perl.conf
Performing variable substitutions in blib/conf/MobyServices/moby.conf
Performing variable substitutions in blib/conf/pop_demo.conf
Performing variable substitutions in blib/conf/renderfarm.conf
Performing variable substitutions in blib/conf/slave_preload.conf
Performing variable substitutions in blib/conf/submitter_plugin.conf
Performing variable substitutions in blib/conf/synteny/oryza.synconf.disabled.conf
Performing variable substitutions in blib/conf/synteny/rice_synteny.conf
Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf
Performing variable substitutions in blib/conf/themes/solid_gray_colors
Performing variable substitutions in blib/conf/themes/transparent_colors
Performing variable substitutions in blib/conf/themes/warm_colors
Performing variable substitutions in blib/conf/volvox.conf
Performing variable substitutions in blib/conf/yeast_chr1+2.conf
Performing variable substitutions in blib/conf/yeast_renderfarm.conf
Performing variable substitutions in blib/conf/yeast_simple.conf
Performing variable substitutions in blib/htdocs/annotation_help.html
Performing variable substitutions in blib/htdocs/cloud_index.html
Performing variable substitutions in blib/htdocs/example_scripts/index.html
Performing variable substitutions in blib/htdocs/example_scripts/README
Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html
Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html
Performing variable substitutions in blib/htdocs/general_help.html
Performing variable substitutions in blib/htdocs/index.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf
Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html
Performing variable substitutions in blib/htdocs/vbox_index.html
Performing variable substitutions in blib/etc/default/gbrowse-aws-balancer
Use of uninitialized value $wwwuser in substitution (s///) at /<<BUILDDIR>>/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 871, <GEN91> line 10.
Performing variable substitutions in blib/etc/default/gbrowse-slave
Performing variable substitutions in blib/etc/init.d/gbrowse-aws-balancer
Performing variable substitutions in blib/etc/init.d/gbrowse-slave
Use of uninitialized value $wwwuser in substitution (s///) at /<<BUILDDIR>>/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 871, <GEN97> line 20.
Building GBrowse
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing debian/gbrowse/etc/default/gbrowse-aws-balancer
Installing debian/gbrowse/etc/default/gbrowse-slave
Installing debian/gbrowse/etc/init.d/gbrowse-aws-balancer
Installing debian/gbrowse/etc/init.d/gbrowse-slave
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm
mv debian/gbrowse/lib/perl5/* debian/gbrowse/usr/share/perl5
# Remove arch dependant data
mkdir -p debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/Bio/Graphics/Browser2/CAlign/
mkdir -p debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.36/Bio/Graphics/Browser2/
mv debian/gbrowse/usr/share/perl5/auto/Bio/Graphics/Browser2/CAlign/* debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/Bio/Graphics/Browser2/CAlign/
mv debian/gbrowse/usr/share/perl5/Bio/Graphics/Browser2/CAlign.pm debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.36/Bio/Graphics/Browser2/CAlign.pm
rm -rf debian/gbrowse/lib
rm -f debian/gbrowse/usr/share/doc/gbrowse/INSTALL
rm -f debian/gbrowse/usr/share/perl5/auto/GBrowse/.packlist
rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/prototype.js
rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/scriptaculous.js
chmod 644 debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm
chmod 644 debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled.conf
#Remove database (kept as separate package)
rm -rf debian/gbrowse/var/lib/gbrowse/databases/*
#Rename pl scripts in bin
file-rename 's/\.pl//' debian/gbrowse/bin/*.pl
mv debian/gbrowse/bin debian/gbrowse/usr/bin
# Activate configuration files.
find /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/etc -name '*.new' | xargs file-rename 's/.new//'
rm -rf /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/usr/share/perl5/auto
# Update conf files
sed -i 's/gbrowse2/gbrowse/g' /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/etc/gbrowse/yeast*.conf
sed -i 's/gbrowse2/gbrowse/g' /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/etc/gbrowse/slave*.conf
# move OpenID constumer secret to /etc/gbrowse to make it system admin configurable
mv /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/usr/share/perl5/GBrowse/ConfigData.pm /<<BUILDDIR>>/gbrowse-2.56+dfsg/debian/gbrowse/etc/gbrowse/ConfigData.pm
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_install -a
dh_apache2 -a
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
#Rename due to perl extension seen as polish
file-rename 's/\.pl\.1p/\.1p/' debian/gbrowse/man/man1/*.pl.1p
mkdir -p debian/gbrowse-calign/man/man3/
mv debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm debian/gbrowse-calign/man/man3/Bio::Graphics::Browser2::CAlign.3pm
dh_installman
rm -rf debian/gbrowse/man
rm -rf debian/gbrowse-calign/man
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_lintian -a
dh_perl -a
debian/rules override_dh_link
make[1]: Entering directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_link
# Fix broken link ... even if I habe no idea what a link to a not existing dir should serve for
ln -sf /var/cache/gbrowse/images debian/gbrowse/usr/share/gbrowse/htdocs/i
make[1]: Leaving directory '/<<BUILDDIR>>/gbrowse-2.56+dfsg'
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'gbrowse-calign' in '../gbrowse-calign_2.56+dfsg-11+b1_armhf.deb'.
dpkg-deb: building package 'gbrowse-calign-dbgsym' in '../gbrowse-calign-dbgsym_2.56+dfsg-11+b1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../gbrowse_2.56+dfsg-11+b1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../gbrowse_2.56+dfsg-11+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-11-03T11:04:57Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
gbrowse_2.56+dfsg-11+b1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Fri, 30 Sep 2022 09:26:00 +0000
Source: gbrowse (2.56+dfsg-11)
Binary: gbrowse-calign gbrowse-calign-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 2.56+dfsg-11+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
gbrowse-calign - CAlign helper
Changes:
gbrowse (2.56+dfsg-11+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
5eb519d972779e7d636bf1dd931232fd08bfd2c2 29968 gbrowse-calign-dbgsym_2.56+dfsg-11+b1_armhf.deb
c22b4409876cd8dacb1bd1c8292bdf6f4c1a99da 34972 gbrowse-calign_2.56+dfsg-11+b1_armhf.deb
e836b681bae9d232b56f723a6b03e686261bf38a 10334 gbrowse_2.56+dfsg-11+b1_armhf.buildinfo
Checksums-Sha256:
37bee9a1a0c08858c6d20079846b177a11e9dab66dfd6607693d361341bd3a17 29968 gbrowse-calign-dbgsym_2.56+dfsg-11+b1_armhf.deb
9ac8f5444691c8317f7085090ccf53a30b2e90b7ca411440d9cdbbf67ce74e68 34972 gbrowse-calign_2.56+dfsg-11+b1_armhf.deb
a9e69c9bc1fa91080499dcaf133360493bb07764e6880afda1e350394f6b3400 10334 gbrowse_2.56+dfsg-11+b1_armhf.buildinfo
Files:
5c85596841c39725e20ce49131c95874 29968 debug optional gbrowse-calign-dbgsym_2.56+dfsg-11+b1_armhf.deb
5478affbbd8464f6781f991a5cdea878 34972 science optional gbrowse-calign_2.56+dfsg-11+b1_armhf.deb
f92c0306c23830d2df0a0227391c291c 10334 science optional gbrowse_2.56+dfsg-11+b1_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
gbrowse-calign-dbgsym_2.56+dfsg-11+b1_armhf.deb
-----------------------------------------------
new Debian package, version 2.0.
size 29968 bytes: control archive=564 bytes.
438 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: gbrowse-calign-dbgsym
Source: gbrowse (2.56+dfsg-11)
Version: 2.56+dfsg-11+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 42
Depends: gbrowse-calign (= 2.56+dfsg-11+b1)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for gbrowse-calign
Build-Ids: f2d75235db18e979e6b34af86da3b3317b2e80ca
drwxr-xr-x root/root 0 2022-09-30 09:26 ./
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/debug/.build-id/f2/
-rw-r--r-- root/root 32024 2022-09-30 09:26 ./usr/lib/debug/.build-id/f2/d75235db18e979e6b34af86da3b3317b2e80ca.debug
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/share/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-09-30 09:26 ./usr/share/doc/gbrowse-calign-dbgsym -> gbrowse-calign
gbrowse-calign_2.56+dfsg-11+b1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 34972 bytes: control archive=996 bytes.
668 bytes, 18 lines control
752 bytes, 8 lines md5sums
Package: gbrowse-calign
Source: gbrowse (2.56+dfsg-11)
Version: 2.56+dfsg-11+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 131
Depends: perl (>= 5.36.0-4), perlapi-5.36.0, libc6 (>= 2.4), gbrowse
Section: science
Priority: optional
Multi-Arch: same
Homepage: http://gmod.org/wiki/GBrowse
Description: CAlign helper
Generic Genome Browser is a simple but highly
configurable web-based genome browser. It is a component of the
Generic Model Organism Systems Database project (GMOD).
.
This package provides the CAlign helper
for use with Realign. It speeds up Smith-Waterman alignment.
drwxr-xr-x root/root 0 2022-09-30 09:26 ./
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/Bio/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/Bio/Graphics/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/Bio/Graphics/Browser2/
-rw-r--r-- root/root 1129 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/Bio/Graphics/Browser2/CAlign.pm
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/Bio/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/Bio/Graphics/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/Bio/Graphics/Browser2/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/Bio/Graphics/Browser2/CAlign/
-rw-r--r-- root/root 0 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs
-rw-r--r-- root/root 66820 2022-09-30 09:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/Bio/Graphics/Browser2/CAlign/CAlign.so
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/share/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/share/doc/gbrowse-calign/
-rw-r--r-- root/root 224 2022-09-30 09:26 ./usr/share/doc/gbrowse-calign/changelog.Debian.armhf.gz
-rw-r--r-- root/root 955 2022-09-30 09:26 ./usr/share/doc/gbrowse-calign/changelog.Debian.gz
-rw-r--r-- root/root 19608 2017-01-15 21:26 ./usr/share/doc/gbrowse-calign/changelog.gz
-rw-r--r-- root/root 17948 2022-09-30 09:26 ./usr/share/doc/gbrowse-calign/copyright
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/share/man/
drwxr-xr-x root/root 0 2022-09-30 09:26 ./usr/share/man/man3/
-rw-r--r-- root/root 2159 2022-09-30 09:26 ./usr/share/man/man3/Bio::Graphics::Browser2::CAlign.3pm.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 32456
Build-Time: 120
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1583
Job: gbrowse_2.56+dfsg-11
Machine Architecture: armhf
Package: gbrowse
Package-Time: 1729
Source-Version: 2.56+dfsg-11
Space: 32456
Status: successful
Version: 2.56+dfsg-11+b1
--------------------------------------------------------------------------------
Finished at 2022-11-03T11:04:57Z
Build needed 00:28:49, 32456k disk space