gbrowse →
2.54+dfsg-6+b1 →
armhf → 2016-01-04 06:10:46
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on testbuildd.raspbian.org
╔══════════════════════════════════════════════════════════════════════════════╗
║ gbrowse 2.54+dfsg-6+b1 (armhf) 04 Jan 2016 05:54 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: gbrowse
Version: 2.54+dfsg-6+b1
Source Version: 2.54+dfsg-6
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/gbrowse-FC_38M/gbrowse-2.54+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/gbrowse-FC_38M' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-649f60c1-4a7d-4a54-8bae-5fff79a6b4bc' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8569 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.6 MB]
Fetched 19.2 MB in 23s (822 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'gbrowse' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/gmod/gbrowse/trunk/
Need to get 4054 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main gbrowse 2.54+dfsg-6 (dsc) [2619 B]
Get:2 http://172.17.0.1/private stretch-staging/main gbrowse 2.54+dfsg-6 (tar) [4031 kB]
Get:3 http://172.17.0.1/private stretch-staging/main gbrowse 2.54+dfsg-6 (diff) [20.0 kB]
Fetched 4054 kB in 1s (3099 kB/s)
Download complete and in download only mode
Check architectures
───────────────────
Check dependencies
──────────────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-wre5zX/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-wre5zX/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-wre5zX/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-wre5zX/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-wre5zX/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-wre5zX/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-wre5zX/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-wre5zX/apt_archive ./ Sources [208 B]
Get:5 file:/«BUILDDIR»/resolver-wre5zX/apt_archive ./ Packages [527 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 0 B/766 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/«BUILDDIR»/resolver-wre5zX/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [766 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 12745 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), bioperl (>= 1.6.901), debhelper (>= 9), dh-apache2, dh-exec, apache2-dev, libbio-graphics-perl (>= 2.31), libcapture-tiny-perl, libcgi-session-perl, libgd-gd2-perl | libgd-gd2-noxpm-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>= 1.7), libjs-scriptaculous (>= 1.9), libvm-ec2-perl, libmodule-build-perl, libcgi-pm-perl | perl (<< 5.19), rename
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), bioperl (>= 1.6.901), debhelper (>= 9), dh-apache2, dh-exec, apache2-dev, libbio-graphics-perl (>= 2.31), libcapture-tiny-perl, libcgi-session-perl, libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>= 1.7), libjs-scriptaculous (>= 1.9), libvm-ec2-perl, libmodule-build-perl, libcgi-pm-perl, rename
dpkg-deb: building package 'sbuild-build-depends-gbrowse-dummy' in '/«BUILDDIR»/resolver-EPREEX/apt_archive/sbuild-build-depends-gbrowse-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-EPREEX/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-EPREEX/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-EPREEX/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-EPREEX/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-EPREEX/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-EPREEX/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-EPREEX/apt_archive ./ Sources [510 B]
Get:5 file:/«BUILDDIR»/resolver-EPREEX/apt_archive ./ Packages [750 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install gbrowse build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
apache2-dev bioperl bsdmainutils ca-certificates debhelper dh-exec
dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base intltool-debian libanyevent-cachedns-perl
libanyevent-http-perl libanyevent-perl libapr1 libapr1-dev libaprutil1
libaprutil1-dev libarchive-zip-perl libbio-graphics-perl libbio-perl-perl
libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl libcommon-sense-perl
libcroco3 libdata-stag-perl libdbd-sqlite3-perl libdbi-perl
libencode-locale-perl libexpat1 libexpat1-dev libexporter-tiny-perl libffi6
libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libgd-gd2-perl libgd3 libglib2.0-0 libgnutls-deb0-28
libhogweed4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu55 libio-html-perl
libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo
libjs-prototype libjs-scriptaculous libjson-perl libldap-2.4-2 libldap2-dev
liblist-moreutils-perl liblwp-mediatypes-perl liblwp-protocol-https-perl
libmagic1 libmodule-build-perl libnet-http-perl libnet-ssleay-perl
libnettle6 libp11-kit0 libpipeline1 libsasl2-2 libsasl2-modules-db
libsctp-dev libsctp1 libsqlite3-0 libssl1.0.2 libstatistics-descriptive-perl
libstring-approx-perl libtasn1-6 libterm-readkey-perl libtiff5
libtimedate-perl libunistring0 liburi-perl libvm-ec2-perl libvpx2
libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl
libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4
man-db netbase openssl po-debconf rename sqlite3 ucf uuid-dev
Suggested packages:
wamerican | wordlist whois vacation dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff libev-perl libevent-perl
libio-async-perl libpoe-perl libtask-weaken-perl python
libxml-sax-expatxs-perl libclone-perl libmldbm-perl libnet-daemon-perl
libsql-statement-perl libgd-tools gnutls-bin libdata-dump-perl
libcrypt-ssleay-perl lksctp-tools libauthen-ntlm-perl less www-browser
libmail-box-perl sqlite3-doc
Recommended packages:
bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl
libapache-dbi-perl libyaml-perl libace-perl libxml-twig-perl
libset-scalar-perl curl | wget | lynx-cur libasync-interrupt-perl libev-perl
| libevent-perl libguard-perl libbio-scf-perl libgd-svg-perl bioperl-run
| libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl
libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl
libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl
libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl
libsort-naturally-perl libspreadsheet-parseexcel-perl
libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
libxml-dom-xpath-perl libxml-parser-perl libxml-sax-writer-perl
libxml-writer-perl libcgi-fast-perl libfreezethaw-perl perl-tk
libxml-libxslt-perl libmldbm-perl libxml-perl libglib2.0-data
shared-mime-info xdg-user-dirs libhtml-format-perl javascript-common
libjson-xs-perl libmodule-signature-perl libpod-readme-perl
libsoftware-license-perl libsasl2-modules libhtml-form-perl
libmailtools-perl libxml-sax-expat-perl xml-core ifupdown
libmail-sendmail-perl
The following NEW packages will be installed:
apache2-dev bioperl bsdmainutils ca-certificates debhelper dh-exec
dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base intltool-debian libanyevent-cachedns-perl
libanyevent-http-perl libanyevent-perl libapr1 libapr1-dev libaprutil1
libaprutil1-dev libarchive-zip-perl libbio-graphics-perl libbio-perl-perl
libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl libcommon-sense-perl
libcroco3 libdata-stag-perl libdbd-sqlite3-perl libdbi-perl
libencode-locale-perl libexpat1 libexpat1-dev libexporter-tiny-perl libffi6
libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libgd-gd2-perl libgd3 libglib2.0-0 libgnutls-deb0-28
libhogweed4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu55 libio-html-perl
libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo
libjs-prototype libjs-scriptaculous libjson-perl libldap-2.4-2 libldap2-dev
liblist-moreutils-perl liblwp-mediatypes-perl liblwp-protocol-https-perl
libmagic1 libmodule-build-perl libnet-http-perl libnet-ssleay-perl
libnettle6 libp11-kit0 libpipeline1 libsasl2-2 libsasl2-modules-db
libsctp-dev libsctp1 libsqlite3-0 libssl1.0.2 libstatistics-descriptive-perl
libstring-approx-perl libtasn1-6 libterm-readkey-perl libtiff5
libtimedate-perl libunistring0 liburi-perl libvm-ec2-perl libvpx2
libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl
libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4
man-db netbase openssl po-debconf rename sbuild-build-depends-gbrowse-dummy
sqlite3 ucf uuid-dev
0 upgraded, 114 newly installed, 0 to remove and 1 not upgraded.
Need to get 37.7 MB/37.7 MB of archives.
After this operation, 128 MB of additional disk space will be used.
Get:1 file:/«BUILDDIR»/resolver-EPREEX/apt_archive ./ sbuild-build-depends-gbrowse-dummy 0.invalid.0 [994 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-4 [1084 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libfreetype6 armhf 2.6.1-0.1 [411 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf ucf all 3.0031 [68.9 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf fonts-dejavu-core all 2.35-1 [1064 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf fontconfig-config all 2.11.0-6.3 [273 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libfontconfig1 armhf 2.11.0-6.3 [311 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libxdmcp6 armhf 1:1.1.2-1 [25.0 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libxcb1 armhf 1.10-3+b1 [40.6 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libx11-data all 2:1.6.3-1 [128 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2e-1 [883 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf netbase all 5.3 [19.0 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.6-1 [119 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.1.1-4 [200 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.1.1-4 [126 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-3 [93.3 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.7-3 [44.4 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libgnutls-deb0-28 armhf 3.3.19-1 [647 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-14+b1 [65.8 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-14+b1 [97.1 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b1 [199 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.9.2-1 [404 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-6 [7379 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.0.2e-1 [662 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libapr1 armhf 1.5.2-3 [80.0 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf uuid-dev armhf 2.27.1-1 [80.3 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libsctp1 armhf 1.0.16+dfsg-3 [27.2 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libsctp-dev armhf 1.0.16+dfsg-3 [83.0 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libapr1-dev armhf 1.5.2-3 [633 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libaprutil1 armhf 1.5.4-1+b1 [75.6 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libldap2-dev armhf 2.4.42+dfsg-2+rpi1+b1 [305 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.1.0-7 [114 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libaprutil1-dev armhf 1.5.4-1+b1 [365 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.6-1 [1393 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.18 [248 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.55-1 [97.4 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.014-1 [10.6 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.014-1 [7472 B]
Get:55 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20151225 [830 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf apache2-dev armhf 2.4.18-1 [295 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libio-string-perl all 1.08-3 [12.3 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libdata-stag-perl all 0.14-1 [476 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libbio-perl-perl all 1.6.924-3 [4748 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf bioperl all 1.6.924-3 [420 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20151214 [200 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libanyevent-perl armhf 7.110-1+rpi1 [391 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libanyevent-cachedns-perl all 0.08-2 [7150 B]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libcommon-sense-perl armhf 3.74-1+b1 [23.9 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libanyevent-http-perl all 2.22-1 [35.0 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.4.1-2 [103 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libtiff5 armhf 4.0.5-1 [200 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libvpx2 armhf 1.4.0-4+rpi1 [409 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libxpm4 armhf 1:3.5.11-1+b1 [42.4 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libgd3 armhf 2.1.1-4 [125 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libgd-gd2-perl armhf 1:2.46-3.1+b3 [167 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libbio-graphics-perl all 2.39-4 [604 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libcapture-tiny-perl all 0.30-2 [24.6 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libhtml-tagset-perl all 3.20-2 [13.5 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf liburi-perl all 1.69-1 [96.2 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libhtml-parser-perl armhf 3.71-2+b1 [101 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libcgi-pm-perl all 4.22-1 [224 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libcgi-session-perl all 4.48-2 [119 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libdbi-perl armhf 1.634-1+b1 [781 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libdbd-sqlite3-perl armhf 1.46-1+b1 [145 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libencode-locale-perl all 1.05-1 [13.7 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libexporter-tiny-perl all 0.042-1 [32.4 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libhttp-date-perl all 6.02-1 [10.7 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libfile-listing-perl all 6.04-1 [10.3 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libhtml-tree-perl all 5.03-2 [210 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libio-html-perl all 1.001-1 [17.6 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf liblwp-mediatypes-perl all 6.02-1 [22.1 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libhttp-message-perl all 6.11-1 [75.9 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libhttp-cookies-perl all 6.01-1 [17.4 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libhttp-daemon-perl all 6.01-1 [17.3 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libhttp-negotiate-perl all 6.00-2 [13.6 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libnet-ssleay-perl armhf 1.72-1+b2 [263 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libio-socket-ssl-perl all 2.022-1 [191 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libjs-prototype all 1.7.1-3 [44.3 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libjs-scriptaculous all 1.9.0-2 [129 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf libjson-perl all 2.90-1 [86.0 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf liblist-moreutils-perl armhf 0.413-1+b1 [68.0 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libnet-http-perl all 6.09-1 [25.1 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf libwww-robotrules-perl all 6.01-1 [14.3 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libwww-perl all 6.15-1 [195 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf liblwp-protocol-https-perl all 6.06-2 [9582 B]
Get:102 http://172.17.0.1/private stretch-staging/main armhf libmodule-build-perl all 0.421400-3 [259 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf libstatistics-descriptive-perl all 3.0609-1 [41.5 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf libstring-approx-perl armhf 3.27-1+b3 [38.2 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf libterm-readkey-perl armhf 2.33-1+b1 [29.4 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf libxml-namespacesupport-perl all 1.11-1 [14.8 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf libxml-sax-base-perl all 1.07-1 [23.1 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf libxml-sax-perl all 0.99+dfsg-2 [68.3 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf libxml-libxml-perl armhf 2.0123+dfsg-1+b1 [317 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf libxml-simple-perl all 2.22-1 [71.8 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf libvm-ec2-perl all 1.28-1 [768 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf rename all 0.20-4 [12.5 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf sqlite3 armhf 3.9.2-1 [109 kB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf dh-exec armhf 0.22 [24.5 kB]
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Unpacking libwww-robotrules-perl (6.01-1) ...
Selecting previously unselected package libwww-perl.
Preparing to unpack .../libwww-perl_6.15-1_all.deb ...
Unpacking libwww-perl (6.15-1) ...
Selecting previously unselected package liblwp-protocol-https-perl.
Preparing to unpack .../liblwp-protocol-https-perl_6.06-2_all.deb ...
Unpacking liblwp-protocol-https-perl (6.06-2) ...
Selecting previously unselected package libmodule-build-perl.
Preparing to unpack .../libmodule-build-perl_0.421400-3_all.deb ...
Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl'
Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl'
Unpacking libmodule-build-perl (0.421400-3) ...
Selecting previously unselected package libstatistics-descriptive-perl.
Preparing to unpack .../libstatistics-descriptive-perl_3.0609-1_all.deb ...
Unpacking libstatistics-descriptive-perl (3.0609-1) ...
Selecting previously unselected package libstring-approx-perl.
Preparing to unpack .../libstring-approx-perl_3.27-1+b3_armhf.deb ...
Unpacking libstring-approx-perl (3.27-1+b3) ...
Selecting previously unselected package libterm-readkey-perl.
Preparing to unpack .../libterm-readkey-perl_2.33-1+b1_armhf.deb ...
Unpacking libterm-readkey-perl (2.33-1+b1) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../libxml-namespacesupport-perl_1.11-1_all.deb ...
Unpacking libxml-namespacesupport-perl (1.11-1) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../libxml-sax-base-perl_1.07-1_all.deb ...
Unpacking libxml-sax-base-perl (1.07-1) ...
Selecting previously unselected package libxml-sax-perl.
Preparing to unpack .../libxml-sax-perl_0.99+dfsg-2_all.deb ...
Unpacking libxml-sax-perl (0.99+dfsg-2) ...
Selecting previously unselected package libxml-libxml-perl.
Preparing to unpack .../libxml-libxml-perl_2.0123+dfsg-1+b1_armhf.deb ...
Unpacking libxml-libxml-perl (2.0123+dfsg-1+b1) ...
Selecting previously unselected package libxml-simple-perl.
Preparing to unpack .../libxml-simple-perl_2.22-1_all.deb ...
Unpacking libxml-simple-perl (2.22-1) ...
Selecting previously unselected package libvm-ec2-perl.
Preparing to unpack .../libvm-ec2-perl_1.28-1_all.deb ...
Unpacking libvm-ec2-perl (1.28-1) ...
Selecting previously unselected package rename.
Preparing to unpack .../archives/rename_0.20-4_all.deb ...
Unpacking rename (0.20-4) ...
Selecting previously unselected package sqlite3.
Preparing to unpack .../sqlite3_3.9.2-1_armhf.deb ...
Unpacking sqlite3 (3.9.2-1) ...
Selecting previously unselected package dh-exec.
Preparing to unpack .../dh-exec_0.22_armhf.deb ...
Unpacking dh-exec (0.22) ...
Selecting previously unselected package sbuild-build-depends-gbrowse-dummy.
Preparing to unpack .../sbuild-build-depends-gbrowse-dummy.deb ...
Unpacking sbuild-build-depends-gbrowse-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.21-6) ...
Setting up groff-base (1.22.3-4) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-1) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libexpat1:armhf (2.1.0-7) ...
Setting up libfreetype6:armhf (2.6.1-0.1) ...
Setting up ucf (3.0031) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up fontconfig-config (2.11.0-6.3) ...
Setting up libfontconfig1:armhf (2.11.0-6.3) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-1) ...
Setting up libxcb1:armhf (1.10-3+b1) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up libssl1.0.2:armhf (1.0.2e-1) ...
Setting up netbase (5.3) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.6-1) ...
Setting up libnettle6:armhf (3.1.1-4) ...
Setting up libhogweed4:armhf (3.1.1-4) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libp11-kit0:armhf (0.23.2-3) ...
Setting up libtasn1-6:armhf (4.7-3) ...
Setting up libgnutls-deb0-28:armhf (3.3.19-1) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-14+b1) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-14+b1) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b1) ...
Setting up libsqlite3-0:armhf (3.9.2-1) ...
Setting up libicu55:armhf (55.1-6) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up openssl (1.0.2e-1) ...
Setting up libapr1:armhf (1.5.2-3) ...
Setting up uuid-dev:armhf (2.27.1-1) ...
Setting up libsctp1:armhf (1.0.16+dfsg-3) ...
Setting up libsctp-dev (1.0.16+dfsg-3) ...
Setting up libapr1-dev (1.5.2-3) ...
Setting up libaprutil1:armhf (1.5.4-1+b1) ...
Setting up libldap2-dev:armhf (2.4.42+dfsg-2+rpi1+b1) ...
Setting up libexpat1-dev:armhf (2.1.0-7) ...
Setting up libaprutil1-dev (1.5.4-1+b1) ...
Setting up libglib2.0-0:armhf (2.46.2-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.6-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.18) ...
Setting up libarchive-zip-perl (1.55-1) ...
Setting up libfile-stripnondeterminism-perl (0.014-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libio-string-perl (1.08-3) ...
Setting up libdata-stag-perl (0.14-1) ...
Setting up libbio-perl-perl (1.6.924-3) ...
Setting up bioperl (1.6.924-3) ...
Setting up ca-certificates (20151214) ...
Setting up libanyevent-perl (7.110-1+rpi1) ...
Setting up libanyevent-cachedns-perl (0.08-2) ...
Setting up libcommon-sense-perl (3.74-1+b1) ...
Setting up libanyevent-http-perl (2.22-1) ...
Setting up libjpeg62-turbo:armhf (1:1.4.1-2) ...
Setting up libtiff5:armhf (4.0.5-1) ...
Setting up libvpx2:armhf (1.4.0-4+rpi1) ...
Setting up libxpm4:armhf (1:3.5.11-1+b1) ...
Setting up libgd3:armhf (2.1.1-4) ...
Setting up libgd-gd2-perl (1:2.46-3.1+b3) ...
Setting up libbio-graphics-perl (2.39-4) ...
Setting up libcapture-tiny-perl (0.30-2) ...
Setting up libhtml-tagset-perl (3.20-2) ...
Setting up liburi-perl (1.69-1) ...
Setting up libhtml-parser-perl (3.71-2+b1) ...
Setting up libcgi-pm-perl (4.22-1) ...
Setting up libcgi-session-perl (4.48-2) ...
Setting up libdbi-perl (1.634-1+b1) ...
Setting up libdbd-sqlite3-perl (1.46-1+b1) ...
Setting up libencode-locale-perl (1.05-1) ...
Setting up libexporter-tiny-perl (0.042-1) ...
Setting up libhttp-date-perl (6.02-1) ...
Setting up libfile-listing-perl (6.04-1) ...
Setting up libhtml-tree-perl (5.03-2) ...
Setting up libio-html-perl (1.001-1) ...
Setting up liblwp-mediatypes-perl (6.02-1) ...
Setting up libhttp-message-perl (6.11-1) ...
Setting up libhttp-cookies-perl (6.01-1) ...
Setting up libhttp-daemon-perl (6.01-1) ...
Setting up libhttp-negotiate-perl (6.00-2) ...
Setting up libnet-ssleay-perl (1.72-1+b2) ...
Setting up libio-socket-ssl-perl (2.022-1) ...
Setting up libjs-prototype (1.7.1-3) ...
Setting up libjs-scriptaculous (1.9.0-2) ...
Setting up libjson-perl (2.90-1) ...
Setting up liblist-moreutils-perl (0.413-1+b1) ...
Setting up libnet-http-perl (6.09-1) ...
Setting up libwww-robotrules-perl (6.01-1) ...
Setting up libmodule-build-perl (0.421400-3) ...
Setting up libstatistics-descriptive-perl (3.0609-1) ...
Setting up libstring-approx-perl (3.27-1+b3) ...
Setting up libterm-readkey-perl (2.33-1+b1) ...
Setting up libxml-namespacesupport-perl (1.11-1) ...
Setting up libxml-sax-base-perl (1.07-1) ...
Setting up libxml-sax-perl (0.99+dfsg-2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-libxml-perl (2.0123+dfsg-1+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-simple-perl (2.22-1) ...
Setting up rename (0.20-4) ...
update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode
Setting up sqlite3 (3.9.2-1) ...
Setting up dh-strip-nondeterminism (0.014-1) ...
Setting up debhelper (9.20151225) ...
Setting up apache2-dev (2.4.18-1) ...
Setting up liblwp-protocol-https-perl (6.06-2) ...
Setting up dh-exec (0.22) ...
Setting up libwww-perl (6.15-1) ...
Setting up libvm-ec2-perl (1.28-1) ...
Setting up sbuild-build-depends-gbrowse-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.21-6) ...
Processing triggers for ca-certificates (20151214) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.90.20151209-1 dpkg-dev_1.18.4 g++-5_5.3.1-4+rpi1 gcc-5_5.3.1-4+rpi1 libc6-dev_2.21-6 libstdc++-5-dev_5.3.1-4+rpi1 libstdc++6_5.3.1-4+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apache2-dev_2.4.18-1 apt_1.1.5 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.90.20151209-1 bioperl_1.6.924-3 bsdmainutils_9.0.6 bsdutils_1:2.27.1-1 build-essential_11.7 bzip2_1.0.6-8 ca-certificates_20151214 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-4+rpi1 dash_0.5.7-4 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20151225 debianutils_4.5.1 dh-exec_0.22 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.114-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-10 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.35-1 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-4+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-3 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-4+rpi1 gcc-5-base_5.3.1-4+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-4+rpi1 kmod_21-1 libacl1_2.2.52-2 libanyevent-cachedns-perl_0.08-2 libanyevent-http-perl_2.22-1 libanyevent-perl_7.110-1+rpi1 libapparmor1_2.10-2+b2 libapr1_1.5.2-3 libapr1-dev_1.5.2-3 libaprutil1_1.5.4-1+b1 libaprutil1-dev_1.5.4-1+b1 libapt-pkg4.16_1.0.10.2 libapt-pkg5.0_1.1.5 libarchive-zip-perl_1.55-1 libasan2_5.3.1-4+rpi1 libatomic1_5.3.1-4+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libbio-graphics-perl_2.39-4 libbio-perl-perl_1.6.924-3 libblkid1_2.27.1-1 libbz2-1.0_1.0.6-8 libc-bin_2.21-6 libc-dev-bin_2.21-6 libc6_2.21-6 libc6-dev_2.21-6 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcapture-tiny-perl_0.30-2 libcc1-0_5.3.1-4+rpi1 libcgi-pm-perl_4.22-1 libcgi-session-perl_4.48-2 libcomerr2_1.42.13-1 libcommon-sense-perl_3.74-1+b1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5 libdata-stag-perl_0.14-1 libdb5.3_5.3.28-11 libdbd-sqlite3-perl_1.46-1+b1 libdbi-perl_1.634-1+b1 libdbus-1-3_1.10.6-1 libdebconfclient0_0.201 libdevmapper1.02.1_2:1.02.114-1 libdpkg-perl_1.18.4 libdrm2_2.4.65-3 libencode-locale-perl_1.05-1 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libexporter-tiny-perl_0.042-1 libfakeroot_1.20.2-1 libfdisk1_2.27.1-1 libffi6_3.2.1-4 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_0.014-1 libfontconfig1_2.11.0-6.3 libfreetype6_2.6.1-0.1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-4+rpi1 libgcc1_1:5.3.1-4+rpi1 libgcrypt20_1.6.4-4 libgd-gd2-perl_1:2.46-3.1+b3 libgd3_2.1.1-4 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.19-1 libgomp1_5.3.1-4+rpi1 libgpg-error0_1.21-1 libhogweed4_3.1.1-4 libhtml-parser-perl_3.71-2+b1 libhtml-tagset-perl_3.20-2 libhtml-tree-perl_5.03-2 libhttp-cookies-perl_6.01-1 libhttp-daemon-perl_6.01-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.11-1 libhttp-negotiate-perl_6.00-2 libicu55_55.1-6 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.022-1 libio-string-perl_1.08-3 libisl13_0.14-2 libisl15_0.15-3 libjbig0_2.1-3.1 libjpeg62-turbo_1:1.4.1-2 libjs-prototype_1.7.1-3 libjs-scriptaculous_1.9.0-2 libjson-perl_2.90-1 libklibc_2.0.4-4+rpi1 libkmod2_21-1 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b1 libldap2-dev_2.4.42+dfsg-2+rpi1+b1 liblist-moreutils-perl_0.413-1+b1 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.06-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmodule-build-perl_0.421400-3 libmount1_2.27.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libnet-http-perl_6.09-1 libnet-ssleay-perl_1.72-1+b2 libnettle6_3.1.1-4 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-8 libperl5.22_5.22.1-3 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps4_2:3.3.10-2 libreadline6_6.3-8+b3 libsasl2-2_2.1.26.dfsg1-14+b1 libsasl2-modules-db_2.1.26.dfsg1-14+b1 libsctp-dev_1.0.16+dfsg-3 libsctp1_1.0.16+dfsg-3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsmartcols1_2.27.1-1 libsqlite3-0_3.9.2-1 libss2_1.42.13-1 libssl1.0.2_1.0.2e-1 libstatistics-descriptive-perl_3.0609-1 libstdc++-5-dev_5.3.1-4+rpi1 libstdc++6_5.3.1-4+rpi1 libstring-approx-perl_3.27-1+b3 libsystemd0_228-2 libtasn1-6_4.7-3 libterm-readkey-perl_2.33-1+b1 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtiff5_4.0.5-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-4+rpi1 libudev1_228-2 libunistring0_0.9.3-5.2 liburi-perl_1.69-1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1 libvm-ec2-perl_1.28-1 libvpx2_1.4.0-4+rpi1 libwww-perl_6.15-1 libwww-robotrules-perl_6.01-1 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb1_1.10-3+b1 libxdmcp6_1:1.1.2-1 libxml-libxml-perl_2.0123+dfsg-1+b1 libxml-namespacesupport-perl_1.11-1 libxml-sax-base-perl_1.07-1 libxml-sax-perl_0.99+dfsg-2 libxml-simple-perl_2.22-1 libxml2_2.9.3+dfsg1-1 libxpm4_1:3.5.11-1+b1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.5-1 manpages_3.74-1 mawk_1.3.3-17 mount_2.27.1-1 multiarch-support_2.21-6 nano_2.4.2-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 netbase_5.3 openssl_1.0.2e-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-3 perl-base_5.22.1-3 perl-modules-5.22_5.22.1-3 po-debconf_1.0.18 procps_2:3.3.10-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 rename_0.20-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gbrowse-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 sqlite3_3.9.2-1 startpar_0.59-3 systemd_228-2 systemd-sysv_228-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2015g-1 ucf_3.0031 udev_228-2 util-linux_2.27.1-1 uuid-dev_2.27.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Dec 2 11:32:07 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./gbrowse_2.54+dfsg-6.dsc
dpkg-source: info: extracting gbrowse in gbrowse-2.54+dfsg
dpkg-source: info: unpacking gbrowse_2.54+dfsg.orig.tar.bz2
dpkg-source: info: unpacking gbrowse_2.54+dfsg-6.debian.tar.xz
dpkg-source: info: applying debian-packaging-patch
dpkg-source: info: applying gbrowse-slave-fix_defaults_path
dpkg-source: info: applying manpages.patch
dpkg-source: info: applying fix_pop_url
dpkg-source: info: applying skipRenderFarmTest_UpstreamBug12
dpkg-source: info: applying skip_check_installed_test.patch
dpkg-source: info: applying source_init_functions
Check disc space
────────────────
Sufficient free space for build
Hack binNMU version
───────────────────
Created changelog entry for binNMU version 2.54+dfsg-6+b1
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-649f60c1-4a7d-4a54-8bae-5fff79a6b4bc
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package gbrowse
dpkg-buildpackage: source version 2.54+dfsg-6+b1
dpkg-buildpackage: source distribution stretch-staging
dpkg-source --before-build gbrowse-2.54+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with apache2
dh_testdir
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch --with apache2
dh_testdir -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/«BUILDDIR»/gbrowse-2.54+dfsg'
dh_auto_configure -- --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse
perl Build.PL --installdirs vendor --config "optimize=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse
Possible precedence issue with control flow operator at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 1032.
Checking prerequisites...
recommends:
* Bio::DB::BigFile is not installed
* Bio::DB::Sam is not installed
* Bio::Das is not installed
* Crypt::SSLeay is not installed
* DBD::Pg is not installed
* DBD::mysql is not installed
* DB_File::Lock is not installed
* FCGI is not installed
* File::NFSLock is not installed
* GD::SVG is not installed
* Net::OpenID::Consumer is not installed
* Net::SMTP::SSL is not installed
* Parse::Apache::ServerStatus is not installed
* Template is not installed
* Do not worry if some "recommended" prerequisites are missing. You can install *
* them later if you need the features they provide. Do not proceed with the *
* install if any of "REQUIRED" prerequisites are missing. *
* *
* The optional Safe::World module does not currently run on Perl 5.10 or *
* higher, and so cannot be installed. *
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
Run 'Build installdeps' to install missing prerequisites.
**** WARNING *****************************************************************************************
If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please
set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to
create/update your user account database.
See /etc/gbrowse2/GBrowse.conf.new for suggested settings.
******************************************************************************************************
Now run:
./Build test
./Build demo (optional)
./Build install (as superuser/administrator)
-or-
./Build install_slave (optional, for slave installations)
Other useful targets:
./Build register (to register your copy of GBrowse)
./Build reconfig (to reconfigure install locations)
./Build demostop (to stop the demo)
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'GBrowse' version '2.54'
make[1]: Leaving directory '/«BUILDDIR»/gbrowse-2.54+dfsg'
dh_auto_build -a
perl Build
Possible precedence issue with control flow operator at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 1032.
NOTE: Run ./Build reconfig to change existing configuration.
Building GBrowse
arm-linux-gnueabihf-gcc -I/«BUILDDIR»/gbrowse-2.54+dfsg/libalign -I/usr/lib/arm-linux-gnueabihf/perl/5.22/CORE -DXS_VERSION="2.54" -DVERSION="2.54" -fPIC -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/Graphics/Browser2/CAlign.o lib/Bio/Graphics/Browser2/CAlign.c
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs')
arm-linux-gnueabihf-gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.so lib/Bio/Graphics/Browser2/CAlign.o
Performing variable substitutions in blib/conf/detail_select_menu.conf
Performing variable substitutions in blib/conf/enzymes.txt
Performing variable substitutions in blib/conf/GBrowse.conf
Performing variable substitutions in blib/conf/log4perl.conf
Performing variable substitutions in blib/conf/MobyServices/moby.conf
Performing variable substitutions in blib/conf/pop_demo.conf
Performing variable substitutions in blib/conf/renderfarm.conf
Performing variable substitutions in blib/conf/slave_preload.conf
Performing variable substitutions in blib/conf/submitter_plugin.conf
Performing variable substitutions in blib/conf/synteny/rice_synteny.conf
Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf
Performing variable substitutions in blib/conf/themes/solid_gray_colors
Performing variable substitutions in blib/conf/themes/transparent_colors
Performing variable substitutions in blib/conf/themes/warm_colors
Performing variable substitutions in blib/conf/volvox.conf
Performing variable substitutions in blib/conf/yeast_chr1+2.conf
Performing variable substitutions in blib/conf/yeast_renderfarm.conf
Performing variable substitutions in blib/conf/yeast_simple.conf
Performing variable substitutions in blib/htdocs/annotation_help.html
Performing variable substitutions in blib/htdocs/cloud_index.html
Performing variable substitutions in blib/htdocs/example_scripts/index.html
Performing variable substitutions in blib/htdocs/example_scripts/README
Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html
Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html
Performing variable substitutions in blib/htdocs/general_help.html
Performing variable substitutions in blib/htdocs/index.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf
Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html
Performing variable substitutions in blib/htdocs/vbox_index.html
Use of uninitialized value in pattern match (m//) at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 728.
dh_auto_test -a
perl Build test --verbose 1
Possible precedence issue with control flow operator at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 1032.
NOTE: Run ./Build reconfig to change existing configuration.
Use of uninitialized value in pattern match (m//) at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 728.
t/00.compile.t ............
ok 1 - cgi-bin/das compiled ok
ok 2 - cgi-bin/das stderr said "syntax OK"
ok 3 - cgi-bin/das nothing on stdout
ok 4 - cgi-bin/gbgff compiled ok
ok 5 - cgi-bin/gbgff stderr said "syntax OK"
ok 6 - cgi-bin/gbgff nothing on stdout
ok 7 - cgi-bin/gbrowse compiled ok
ok 8 - cgi-bin/gbrowse stderr said "syntax OK"
ok 9 - cgi-bin/gbrowse nothing on stdout
ok 10 - cgi-bin/gbrowse_details compiled ok
ok 11 - cgi-bin/gbrowse_details stderr said "syntax OK"
ok 12 - cgi-bin/gbrowse_details nothing on stdout
ok 13 # skip explicitly skipping cgi-bin/gbrowse_gmap
ok 14 - cgi-bin/gbrowse_img compiled ok
ok 15 - cgi-bin/gbrowse_img stderr said "syntax OK"
ok 16 - cgi-bin/gbrowse_img nothing on stdout
ok 17 - cgi-bin/gbrowse_key_img compiled ok
ok 18 - cgi-bin/gbrowse_key_img stderr said "syntax OK"
ok 19 - cgi-bin/gbrowse_key_img nothing on stdout
ok 20 - cgi-bin/gbrowse_login compiled ok
ok 21 - cgi-bin/gbrowse_login stderr said "syntax OK"
ok 22 - cgi-bin/gbrowse_login nothing on stdout
ok 23 - cgi-bin/gbrowse_syn compiled ok
ok 24 - cgi-bin/gbrowse_syn stderr said "syntax OK"
ok 25 - cgi-bin/gbrowse_syn nothing on stdout
ok 26 - bin/auto_install_databases.pl compiled ok
ok 27 - bin/auto_install_databases.pl stderr said "syntax OK"
ok 28 - bin/auto_install_databases.pl nothing on stdout
ok 29 - bin/bed2gff3.pl compiled ok
ok 30 - bin/bed2gff3.pl stderr said "syntax OK"
ok 31 - bin/bed2gff3.pl nothing on stdout
ok 32 - bin/bp_load_gff.pl compiled ok
ok 33 - bin/bp_load_gff.pl stderr said "syntax OK"
ok 34 - bin/bp_load_gff.pl nothing on stdout
ok 35 - bin/gbrowse_change_passwd.pl compiled ok
ok 36 - bin/gbrowse_change_passwd.pl stderr said "syntax OK"
ok 37 - bin/gbrowse_change_passwd.pl nothing on stdout
ok 38 - bin/gbrowse_clean.pl compiled ok
ok 39 - bin/gbrowse_clean.pl stderr said "syntax OK"
ok 40 - bin/gbrowse_clean.pl nothing on stdout
ok 41 - bin/gbrowse_configure_slaves.pl compiled ok
ok 42 - bin/gbrowse_configure_slaves.pl stderr said "syntax OK"
ok 43 - bin/gbrowse_configure_slaves.pl nothing on stdout
ok 44 - bin/gbrowse_create_account.pl compiled ok
ok 45 - bin/gbrowse_create_account.pl stderr said "syntax OK"
ok 46 - bin/gbrowse_create_account.pl nothing on stdout
ok 47 # skip explicitly skipping bin/gbrowse_grow_cloud_vol.pl
ok 48 - bin/gbrowse_import_ucsc_db.pl compiled ok
ok 49 - bin/gbrowse_import_ucsc_db.pl stderr said "syntax OK"
ok 50 - bin/gbrowse_import_ucsc_db.pl nothing on stdout
ok 51 # skip explicitly skipping bin/gbrowse_launch_aws_slaves.pl
ok 52 - bin/gbrowse_metadb_config.pl compiled ok
ok 53 - bin/gbrowse_metadb_config.pl stderr said "syntax OK"
ok 54 - bin/gbrowse_metadb_config.pl nothing on stdout
ok 55 # skip explicitly skipping bin/gbrowse_netinstall.pl
ok 56 # skip explicitly skipping bin/gbrowse_netinstall2.pl
ok 57 - bin/gbrowse_set_admin_passwd.pl compiled ok
ok 58 - bin/gbrowse_set_admin_passwd.pl stderr said "syntax OK"
ok 59 - bin/gbrowse_set_admin_passwd.pl nothing on stdout
ok 60 - bin/gbrowse_slave compiled ok
ok 61 - bin/gbrowse_slave stderr said "syntax OK"
ok 62 - bin/gbrowse_slave nothing on stdout
ok 63 # skip explicitly skipping bin/gbrowse_slave_start_aws.sh
ok 64 - bin/gbrowse_syn_load_alignment_database.pl compiled ok
ok 65 - bin/gbrowse_syn_load_alignment_database.pl stderr said "syntax OK"
ok 66 - bin/gbrowse_syn_load_alignment_database.pl nothing on stdout
ok 67 - bin/gbrowse_syn_load_alignments_msa.pl compiled ok
ok 68 - bin/gbrowse_syn_load_alignments_msa.pl stderr said "syntax OK"
ok 69 - bin/gbrowse_syn_load_alignments_msa.pl nothing on stdout
ok 70 - bin/gtf2gff3.pl compiled ok
ok 71 - bin/gtf2gff3.pl stderr said "syntax OK"
ok 72 - bin/gtf2gff3.pl nothing on stdout
ok 73 - bin/load_genbank.pl compiled ok
ok 74 - bin/load_genbank.pl stderr said "syntax OK"
ok 75 - bin/load_genbank.pl nothing on stdout
ok 76 # skip explicitly skipping bin/make_das_conf.pl
ok 77 - bin/process_bamfiles.pl compiled ok
ok 78 - bin/process_bamfiles.pl stderr said "syntax OK"
ok 79 - bin/process_bamfiles.pl nothing on stdout
ok 80 - bin/process_gadfly.pl compiled ok
ok 81 - bin/process_gadfly.pl stderr said "syntax OK"
ok 82 - bin/process_gadfly.pl nothing on stdout
ok 83 - bin/process_ncbi_human.pl compiled ok
ok 84 - bin/process_ncbi_human.pl stderr said "syntax OK"
ok 85 - bin/process_ncbi_human.pl nothing on stdout
ok 86 - bin/process_sgd.pl compiled ok
ok 87 - bin/process_sgd.pl stderr said "syntax OK"
ok 88 - bin/process_sgd.pl nothing on stdout
ok 89 - bin/report_missing_language_tags.pl compiled ok
ok 90 - bin/report_missing_language_tags.pl stderr said "syntax OK"
ok 91 - bin/report_missing_language_tags.pl nothing on stdout
ok 92 - bin/scan_gbrowse.pl compiled ok
ok 93 - bin/scan_gbrowse.pl stderr said "syntax OK"
ok 94 - bin/scan_gbrowse.pl nothing on stdout
ok 95 - bin/ucsc_genes2gff.pl compiled ok
ok 96 - bin/ucsc_genes2gff.pl stderr said "syntax OK"
ok 97 - bin/ucsc_genes2gff.pl nothing on stdout
ok 98 - bin/wiggle2gff3.pl compiled ok
ok 99 - bin/wiggle2gff3.pl stderr said "syntax OK"
ok 100 - bin/wiggle2gff3.pl nothing on stdout
1..100
ok
t/01.yeast.t ..............
1..7
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok
Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/\$ENV{ <-- HERE (\w+)}/ at /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/DataSource.pm line 963, <DATA> line 192.
t/02.rearchitecture.t .....
1..90
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66
ok 67
ok 68
ok 69
ok 70
ok 71
ok 72
ok 73
ok 74
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok
Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/\$ENV{ <-- HERE (\w+)}/ at /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/DataSource.pm line 963, <DATA> line 192.
t/03.render.t ............. skipped: (no reason given)
Sometimes this test gets 'stuck'. If this happens, kill the test and Build test again.
Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/\$ENV{ <-- HERE (\w+)}/ at /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/DataSource.pm line 963, <DATA> line 192.
t/04.remoteserver.t ....... skipped: (no reason given)
Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/\$ENV{ <-- HERE (\w+)}/ at /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/DataSource.pm line 963, <DATA> line 192.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render.pm line 2348, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render.pm line 2357, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render.pm line 2367, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render.pm line 2384, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render.pm line 2392, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render.pm line 2395, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render.pm line 2431, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render.pm line 2435, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm line 271, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404, <STDIN> line 1.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm line 278, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404, <STDIN> line 1.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm line 279, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404, <STDIN> line 1.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm line 271, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404, <STDIN> line 1.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm line 278, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404, <STDIN> line 1.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm line 279, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404, <STDIN> line 1.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm line 501, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404, <> line 132.
CGI::param called in list context from /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm line 501, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /usr/share/perl5/CGI.pm line 404, <> line 132.
t/05.deferredrendering.t ..
1..19
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok
Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/\$ENV{ <-- HERE (\w+)}/ at /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/DataSource.pm line 963, <DATA> line 192.
t/06.featuresearch.t ...... skipped: (no reason given)
Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/\$ENV{ <-- HERE (\w+)}/ at /«BUILDDIR»/gbrowse-2.54+dfsg/t/../lib/Bio/Graphics/Browser2/DataSource.pm line 963, <DATA> line 192.
t/07.karyotype.t ..........
1..3
ok 1
ok 2
ok 3
ok
t/08.calign.t .............
1..6
# Running under perl version 5.022001 for linux
# Current time local: Mon Jan 4 06:06:32 2016
# Current time GMT: Mon Jan 4 06:06:32 2016
# Using Test.pm version 1.26
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok
All tests successful.
Files=9, Tests=225, 89 wallclock secs ( 0.37 usr 0.06 sys + 76.68 cusr 4.98 csys = 82.09 CPU)
Result: PASS
fakeroot debian/rules binary-arch
dh binary-arch --with apache2
dh_testroot -a
dh_prep -a
debian/rules override_dh_installdirs
make[1]: Entering directory '/«BUILDDIR»/gbrowse-2.54+dfsg'
# svn(-buildpackage) seems to ignore the x bit
chmod +x debian/gbrowse-calign.dirs
dh_installdirs
make[1]: Leaving directory '/«BUILDDIR»/gbrowse-2.54+dfsg'
debian/rules override_dh_auto_install
make[1]: Entering directory '/«BUILDDIR»/gbrowse-2.54+dfsg'
./Build --install_base=debian/gbrowse debianinstall
Possible precedence issue with control flow operator at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 1032.
NOTE: Run ./Build reconfig to change existing configuration.
Use of uninitialized value in pattern match (m//) at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 728.
Building GBrowse
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.so
Installing debian/gbrowse/man/man1/ucsc_genes2gff.pl.1p
Installing debian/gbrowse/man/man1/load_genbank.pl.1p
Installing debian/gbrowse/man/man1/gtf2gff3.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_clean.pl.1p
Installing debian/gbrowse/man/man1/wiggle2gff3.pl.1p
Installing debian/gbrowse/man/man1/make_das_conf.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_grow_cloud_vol.pl.1p
Installing debian/gbrowse/man/man1/bed2gff3.pl.1p
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/das
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbgff
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse
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Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/PageSettings.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Synteny.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Util.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/I18n.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/CGI/Toggle.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RegionSearch.3pm
Installing debian/gbrowse/man/man3/GBrowse::ConfigData.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataSource.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataBase.3pm
Installing debian/gbrowse/man/man3/Bio::DB::SeqFeature::Store::Alias.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::AuthorizedFeatureFile.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::waba_alignment.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::match_gap.3pm
Installing debian/gbrowse/man/man3/Bio::DB::Tagger::Tag.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::OptionPick.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin::AuthPlugin.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Util.3pm
Installing debian/gbrowse/man/man3/Bio::DB::Tagger.3pm
Installing debian/gbrowse/man/man3/CGI::Toggle.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Realign.3pm
Installing debian/gbrowse/man/man3/Legacy::Graphics::Browser.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PluginSet.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Region.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::GFFhelper.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::wormbase_gene.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Markup.3pm
Installing debian/gbrowse/bin/gbrowse_grow_cloud_vol.pl
Installing debian/gbrowse/bin/gbrowse_syn_load_alignment_database.pl
Installing debian/gbrowse/bin/gbrowse_configure_slaves.pl
Installing debian/gbrowse/bin/gbrowse_set_admin_passwd.pl
Installing debian/gbrowse/bin/gbrowse_launch_aws_slaves.pl
Installing debian/gbrowse/bin/gtf2gff3.pl
Installing debian/gbrowse/bin/gbrowse_slave
Installing debian/gbrowse/bin/gbrowse_clean.pl
Installing debian/gbrowse/bin/wiggle2gff3.pl
Installing debian/gbrowse/bin/gbrowse_import_ucsc_db.pl
Installing debian/gbrowse/bin/make_das_conf.pl
Installing debian/gbrowse/bin/gbrowse_metadb_config.pl
Installing debian/gbrowse/bin/gbrowse_change_passwd.pl
Installing debian/gbrowse/bin/bed2gff3.pl
Installing debian/gbrowse/bin/gbrowse_syn_load_alignments_msa.pl
Installing debian/gbrowse/bin/ucsc_genes2gff.pl
Installing debian/gbrowse/bin/load_genbank.pl
Installing debian/gbrowse/bin/scan_gbrowse.pl
Installing debian/gbrowse/bin/gbrowse_create_account.pl
#./Build apache_conf > debian/gbrowse/etc/gbrowse/gbrowse_apache2.conf
perl Build.PL --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse --installetc=y
Possible precedence issue with control flow operator at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 1032.
Checking prerequisites...
recommends:
* Bio::DB::BigFile is not installed
* Bio::DB::Sam is not installed
* Bio::Das is not installed
* Crypt::SSLeay is not installed
* DBD::Pg is not installed
* DBD::mysql is not installed
* DB_File::Lock is not installed
* FCGI is not installed
* File::NFSLock is not installed
* GD::SVG is not installed
* Net::OpenID::Consumer is not installed
* Net::SMTP::SSL is not installed
* Parse::Apache::ServerStatus is not installed
* Template is not installed
* Do not worry if some "recommended" prerequisites are missing. You can install *
* them later if you need the features they provide. Do not proceed with the *
* install if any of "REQUIRED" prerequisites are missing. *
* *
* The optional Safe::World module does not currently run on Perl 5.10 or *
* higher, and so cannot be installed. *
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
Run 'Build installdeps' to install missing prerequisites.
**** WARNING *****************************************************************************************
If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please
set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to
create/update your user account database.
See /etc/gbrowse2/GBrowse.conf.new for suggested settings.
******************************************************************************************************
NOTE: Run ./Build reconfig to change existing configuration.
Now run:
./Build test
./Build demo (optional)
./Build install (as superuser/administrator)
-or-
./Build install_slave (optional, for slave installations)
Other useful targets:
./Build register (to register your copy of GBrowse)
./Build reconfig (to reconfigure install locations)
./Build demostop (to stop the demo)
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'GBrowse' version '2.54'
./Build --install_base=debian/gbrowse install_slave
Possible precedence issue with control flow operator at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 1032.
NOTE: Run ./Build reconfig to change existing configuration.
Performing variable substitutions in blib/conf/detail_select_menu.conf
Performing variable substitutions in blib/conf/enzymes.txt
Performing variable substitutions in blib/conf/GBrowse.conf
Performing variable substitutions in blib/conf/log4perl.conf
Performing variable substitutions in blib/conf/MobyServices/moby.conf
Performing variable substitutions in blib/conf/pop_demo.conf
Performing variable substitutions in blib/conf/renderfarm.conf
Performing variable substitutions in blib/conf/slave_preload.conf
Performing variable substitutions in blib/conf/submitter_plugin.conf
Performing variable substitutions in blib/conf/synteny/rice_synteny.conf
Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf
Performing variable substitutions in blib/conf/themes/solid_gray_colors
Performing variable substitutions in blib/conf/themes/transparent_colors
Performing variable substitutions in blib/conf/themes/warm_colors
Performing variable substitutions in blib/conf/volvox.conf
Performing variable substitutions in blib/conf/yeast_chr1+2.conf
Performing variable substitutions in blib/conf/yeast_renderfarm.conf
Performing variable substitutions in blib/conf/yeast_simple.conf
Performing variable substitutions in blib/htdocs/annotation_help.html
Performing variable substitutions in blib/htdocs/cloud_index.html
Performing variable substitutions in blib/htdocs/example_scripts/index.html
Performing variable substitutions in blib/htdocs/example_scripts/README
Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html
Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html
Performing variable substitutions in blib/htdocs/general_help.html
Performing variable substitutions in blib/htdocs/index.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf
Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html
Performing variable substitutions in blib/htdocs/vbox_index.html
Performing variable substitutions in blib/etc/default/gbrowse-slave
Performing variable substitutions in blib/etc/init.d/gbrowse-slave
Use of uninitialized value $wwwuser in substitution (s///) at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 821, <GEN89> line 20.
Building GBrowse
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing debian/gbrowse/etc/default/gbrowse-slave
Installing debian/gbrowse/etc/init.d/gbrowse-slave
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm
mv debian/gbrowse/lib/perl5/* debian/gbrowse/usr/share/perl5
# Remove arch dependant data
mkdir -p debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/Bio/Graphics/Browser2/CAlign/
mkdir -p debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.22/Bio/Graphics/Browser2/
mv debian/gbrowse/usr/share/perl5/auto/Bio/Graphics/Browser2/CAlign/* debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/Bio/Graphics/Browser2/CAlign/
mv debian/gbrowse/usr/share/perl5/Bio/Graphics/Browser2/CAlign.pm debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.22/Bio/Graphics/Browser2/CAlign.pm
rm -rf debian/gbrowse/lib
rm -f debian/gbrowse/usr/share/doc/gbrowse/INSTALL
rm -f debian/gbrowse/usr/share/perl5/auto/GBrowse/.packlist
rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/prototype.js
rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/scriptaculous.js
chmod 644 debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm
chmod 644 debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled
#Remove database (kept as separate package)
rm -rf debian/gbrowse/var/lib/gbrowse/databases/*
#Rename pl scripts in bin
file-rename 's/\.pl//' debian/gbrowse/bin/*.pl
mv debian/gbrowse/bin debian/gbrowse/usr/bin
# Activate configuration files.
find /«BUILDDIR»/gbrowse-2.54+dfsg/debian/gbrowse/etc -name '*.new' | xargs file-rename 's/.new//'
rm -rf /«BUILDDIR»/gbrowse-2.54+dfsg/debian/gbrowse/usr/share/perl5/auto
# Update conf files
sed -i 's/gbrowse2/gbrowse/g' /«BUILDDIR»/gbrowse-2.54+dfsg/debian/gbrowse/etc/gbrowse/yeast*.conf
sed -i 's/gbrowse2/gbrowse/g' /«BUILDDIR»/gbrowse-2.54+dfsg/debian/gbrowse/etc/gbrowse/slave*.conf
make[1]: Leaving directory '/«BUILDDIR»/gbrowse-2.54+dfsg'
dh_apache2 -a
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/«BUILDDIR»/gbrowse-2.54+dfsg'
#Rename due to perl extension seen as polish
file-rename 's/\.pl\.1p/\.1p/' debian/gbrowse/man/man1/*.pl.1p
mkdir -p debian/gbrowse-calign/man/man3/
mv debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm debian/gbrowse-calign/man/man3/Bio::Graphics::Browser2::CAlign.3pm
dh_installman
rm -rf debian/gbrowse/man
rm -rf debian/gbrowse-calign/man
make[1]: Leaving directory '/«BUILDDIR»/gbrowse-2.54+dfsg'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'gbrowse-calign-dbgsym' in '../gbrowse-calign-dbgsym_2.54+dfsg-6+b1_armhf.deb'.
dpkg-deb: building package 'gbrowse-calign' in '../gbrowse-calign_2.54+dfsg-6+b1_armhf.deb'.
dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../gbrowse_2.54+dfsg-6+b1_armhf.changes
dpkg-genchanges: warning: package gbrowse-calign-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build gbrowse-2.54+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20160104-0607
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
gbrowse_2.54+dfsg-6+b1_armhf.changes:
─────────────────────────────────────
Format: 1.8
Date: Wed, 02 Dec 2015 10:16:15 +0100
Source: gbrowse (2.54+dfsg-6)
Binary: gbrowse gbrowse-data gbrowse-calign
Binary-Only: yes
Architecture: armhf
Version: 2.54+dfsg-6+b1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Description:
gbrowse - GMOD Generic Genome Browser
gbrowse-calign - CAlign helper
gbrowse-data - Sample data to use GBrowse
Changes:
gbrowse (2.54+dfsg-6+b1) stretch-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
f55480da463d8386adb52be60a21e189bb2b1d09 25346 gbrowse-calign-dbgsym_2.54+dfsg-6+b1_armhf.deb
f14e3d7c551d3b55c6a45f42f9138292c30a32d7 34496 gbrowse-calign_2.54+dfsg-6+b1_armhf.deb
Checksums-Sha256:
1726143e877292aa38b5ba12c16ad67684b0f2554a24ee45b2a3c838b5a354f6 25346 gbrowse-calign-dbgsym_2.54+dfsg-6+b1_armhf.deb
74c35f2541909ff005157cb9e424c79dd2a70ded230ab8560301ee5e58331d49 34496 gbrowse-calign_2.54+dfsg-6+b1_armhf.deb
Files:
d3a6ccaf98723c9b3a63e12216388e57 25346 debug extra gbrowse-calign-dbgsym_2.54+dfsg-6+b1_armhf.deb
3676ebcd0ead3552c8a1a783a3a09ac4 34496 science optional gbrowse-calign_2.54+dfsg-6+b1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
gbrowse-calign-dbgsym_2.54+dfsg-6+b1_armhf.deb
──────────────────────────────────────────────
new debian package, version 2.0.
size 25346 bytes: control archive=498 bytes.
449 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: gbrowse-calign-dbgsym
Source: gbrowse (2.54+dfsg-6)
Version: 2.54+dfsg-6+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 38
Depends: gbrowse-calign (= 2.54+dfsg-6+b1)
Section: debug
Priority: extra
Homepage: http://www.gbrowse.org/
Description: Debug symbols for gbrowse-calign
Auto-Built-Package: debug-symbols
Build-Ids: ce1e9cbe5e9e75090cade7044be62c5eb7f7ffc4
drwxr-xr-x root/root 0 2016-01-04 06:07 ./
drwxr-xr-x root/root 0 2016-01-04 06:07 ./usr/
drwxr-xr-x root/root 0 2016-01-04 06:07 ./usr/lib/
drwxr-xr-x root/root 0 2016-01-04 06:07 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-01-04 06:07 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-01-04 06:07 ./usr/lib/debug/.build-id/ce/
-rw-r--r-- root/root 27772 2016-01-04 06:07 ./usr/lib/debug/.build-id/ce/1e9cbe5e9e75090cade7044be62c5eb7f7ffc4.debug
drwxr-xr-x root/root 0 2016-01-04 06:07 ./usr/share/
drwxr-xr-x root/root 0 2016-01-04 06:07 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-01-04 06:07 ./usr/share/doc/gbrowse-calign-dbgsym -> gbrowse-calign
gbrowse-calign_2.54+dfsg-6+b1_armhf.deb
───────────────────────────────────────
new debian package, version 2.0.
size 34496 bytes: control archive=792 bytes.
471 bytes, 13 lines control
752 bytes, 8 lines md5sums
Package: gbrowse-calign
Source: gbrowse (2.54+dfsg-6)
Version: 2.54+dfsg-6+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 75
Depends: perl (>= 5.22.1-3), perlapi-5.22.1, libc6 (>= 2.4), gbrowse
Section: science
Priority: optional
Homepage: http://www.gbrowse.org/
Description: CAlign helper
This package provides the CAlign helper
for use with Realign. It speeds up Smith-Waterman alignment.
drwxr-xr-x root/root 0 2016-01-04 06:07 ./
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/Bio/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/Bio/Graphics/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/Bio/Graphics/Browser2/
-rw-r--r-- root/root 1129 2016-01-04 06:04 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/Bio/Graphics/Browser2/CAlign.pm
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/Bio/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/Bio/Graphics/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/Bio/Graphics/Browser2/
drwxr-xr-x root/root 0 2016-01-04 06:07 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/Bio/Graphics/Browser2/CAlign/
-rw-r--r-- root/root 0 2016-01-04 06:04 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs
-rw-r--r-- root/root 9656 2016-01-04 06:07 ./usr/lib/arm-linux-gnueabihf/perl5/5.22/auto/Bio/Graphics/Browser2/CAlign/CAlign.so
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/share/
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-01-04 06:07 ./usr/share/doc/gbrowse-calign/
-rw-r--r-- root/root 223 2016-01-04 06:04 ./usr/share/doc/gbrowse-calign/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1556 2016-01-04 06:04 ./usr/share/doc/gbrowse-calign/changelog.Debian.gz
-rw-r--r-- root/root 18924 2012-12-11 15:44 ./usr/share/doc/gbrowse-calign/changelog.gz
-rw-r--r-- root/root 17978 2015-12-02 11:04 ./usr/share/doc/gbrowse-calign/copyright
drwxr-xr-x root/root 0 2016-01-04 06:06 ./usr/share/man/
drwxr-xr-x root/root 0 2016-01-04 06:07 ./usr/share/man/man3/
-rw-r--r-- root/root 2161 2016-01-04 06:06 ./usr/share/man/man3/Bio::Graphics::Browser2::CAlign.3pm.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 31536
Build-Time: 154
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 574
Job: gbrowse_2.54+dfsg-6
Machine Architecture: armhf
Package: gbrowse
Package-Time: 781
Source-Version: 2.54+dfsg-6
Space: 31536
Status: successful
Version: 2.54+dfsg-6+b1
────────────────────────────────────────────────────────────────────────────────
Finished at 20160104-0607
Build needed 00:13:01, 31536k disc space