gbrowse →
2.54+dfsg-2 →
armhf → 2013-08-03 02:38:09
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testwandboard
╔══════════════════════════════════════════════════════════════════════════════╗
║ gbrowse 2.54+dfsg-2 (armhf) 03 Aug 2013 02:15 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: gbrowse
Version: 2.54+dfsg-2
Source Version: 2.54+dfsg-2
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/gbrowse-4tMowi/gbrowse-2.54+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/gbrowse-4tMowi' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-1fbd654b-d636-4af2-85e0-02d6be9202ff' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging Release.gpg [490 B]
Get:2 http://172.17.0.1 jessie-staging Release [10.8 kB]
Get:3 http://172.17.0.1 jessie-staging/main Sources [6689 kB]
Get:4 http://172.17.0.1 jessie-staging/main armhf Packages [7851 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 14.6 MB in 36s (395 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
NOTICE: 'gbrowse' packaging is maintained in the 'Svn' version control system at:
svn://svn.debian.org/debian-med/trunk/packages/gmod/gbrowse/trunk/
Need to get 4056 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main gbrowse 2.54+dfsg-2 (dsc) [2594 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main gbrowse 2.54+dfsg-2 (tar) [4031 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main gbrowse 2.54+dfsg-2 (diff) [21.9 kB]
Fetched 4056 kB in 3s (1266 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-y7wGoJ/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 31 not upgraded.
Need to get 0 B/704 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11383 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), bioperl (>= 1.6.901), debhelper (>= 9), dh-apache2, libbio-graphics-perl (>= 2.31), libcapture-tiny-perl, libcgi-session-perl (>= 4.02), libgd-gd2-perl (>= 2.07) | libgd-gd2-noxpm-perl (>= 2.07), libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, perl (>= 5.10.0) | libextutils-cbuilder-perl, sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>= 1.7), libjs-scriptaculous (>= 1.9), libvm-ec2-perl
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), bioperl (>= 1.6.901), debhelper (>= 9), dh-apache2, libbio-graphics-perl (>= 2.31), libcapture-tiny-perl, libcgi-session-perl (>= 4.02), libgd-gd2-perl (>= 2.07), libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, perl (>= 5.10.0), sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>= 1.7), libjs-scriptaculous (>= 1.9), libvm-ec2-perl
dpkg-deb: building package `sbuild-build-depends-gbrowse-dummy' in `/«BUILDDIR»/resolver-VpIwXC/apt_archive/sbuild-build-depends-gbrowse-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install gbrowse build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
apache2-dev bioperl bsdmainutils ca-certificates comerr-dev debhelper file
fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
intltool-debian krb5-multidev libapr1 libapr1-dev libaprutil1
libaprutil1-dev libasprintf0c2 libbio-graphics-perl libbio-perl-perl
libcapture-tiny-perl libcgi-session-perl libcomerr2 libcroco3
libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl
libexpat1 libexpat1-dev libffi6 libfile-listing-perl libfontconfig1
libfreetype6 libgcrypt11 libgd-gd2-perl libgd3 libglib2.0-0 libgnutls26
libgpg-error0 libgssapi-krb5-2 libgssrpc4 libhtml-parser-perl
libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl
libhttp-daemon-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl
libio-string-perl libjbig0 libjpeg8 libjs-prototype libjs-scriptaculous
libjson-perl libk5crypto3 libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6
libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 libldap-2.4-2
libldap2-dev liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1
libmysqlclient-dev libmysqlclient18 libnet-http-perl libnet-ssleay-perl
libp11-kit0 libpcre3-dev libpcrecpp0 libpipeline1 libpng12-0 libpq-dev
libpq5 libsasl2-2 libsasl2-modules libsqlite3-0 libsqlite3-dev libssl-dev
libssl1.0.0 libstatistics-descriptive-perl libstring-approx-perl libtasn1-3
libterm-readkey-perl libtiff4 libunistring0 liburi-perl libuuid1
libvm-ec2-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl
libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
libxml-simple-perl libxml2 libxpm4 man-db mysql-common netbase openssl
po-debconf sqlite3 ttf-dejavu-core ucf uuid-dev zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation doc-base dh-make gettext-doc groff
krb5-doc python libmath-random-perl libxml-sax-expatxs-perl
libnet-daemon-perl libplrpc-perl libsql-statement-perl rng-tools libgd-tools
krb5-user libdata-dump-perl libcrypt-ssleay-perl postgresql-doc-9.1
libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql
libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal sqlite3-doc
libauthen-ntlm-perl less www-browser libmail-box-perl
Recommended packages:
bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl
libapache-dbi-perl libyaml-perl libace-perl liblist-moreutils-perl
libxml-twig-perl libset-scalar-perl curl wget lynx-cur autopoint
libasprintf-dev libgettextpo-dev libbio-scf-perl libgd-svg-perl
libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl
libgraph-perl libgraphviz-perl libpostscript-perl libsoap-lite-perl
libsort-naturally-perl libspreadsheet-parseexcel-perl
libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
libxml-dom-xpath-perl libxml-parser-perl libxml-sax-writer-perl
libxml-writer-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl
libglib2.0-data shared-mime-info libhtml-format-perl libio-socket-ip-perl
libio-socket-inet6-perl javascript-common libjson-xs-perl krb5-locales
libssl-doc uuid-runtime libhtml-form-perl libmailtools-perl
libxml-sax-expat-perl xml-core ifupdown libmail-sendmail-perl
The following NEW packages will be installed:
apache2-dev bioperl bsdmainutils ca-certificates comerr-dev debhelper file
fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
intltool-debian krb5-multidev libapr1 libapr1-dev libaprutil1
libaprutil1-dev libasprintf0c2 libbio-graphics-perl libbio-perl-perl
libcapture-tiny-perl libcgi-session-perl libcroco3 libdata-stag-perl
libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1
libexpat1-dev libffi6 libfile-listing-perl libfontconfig1 libfreetype6
libgcrypt11 libgd-gd2-perl libgd3 libglib2.0-0 libgnutls26 libgpg-error0
libgssapi-krb5-2 libgssrpc4 libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libio-html-perl
libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg8 libjs-prototype
libjs-scriptaculous libjson-perl libk5crypto3 libkadm5clnt-mit8
libkadm5srv-mit8 libkdb5-6 libkeyutils1 libkrb5-3 libkrb5-dev
libkrb5support0 libldap-2.4-2 libldap2-dev liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic1 libmysqlclient-dev libmysqlclient18
libnet-http-perl libnet-ssleay-perl libp11-kit0 libpcre3-dev libpcrecpp0
libpipeline1 libpng12-0 libpq-dev libpq5 libsasl2-2 libsasl2-modules
libsqlite3-0 libsqlite3-dev libssl-dev libssl1.0.0
libstatistics-descriptive-perl libstring-approx-perl libtasn1-3
libterm-readkey-perl libtiff4 libunistring0 liburi-perl libvm-ec2-perl
libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl
libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4
man-db mysql-common netbase openssl po-debconf
sbuild-build-depends-gbrowse-dummy sqlite3 ttf-dejavu-core ucf uuid-dev
zlib1g-dev
The following packages will be upgraded:
libcomerr2 libuuid1
2 upgraded, 122 newly installed, 0 to remove and 29 not upgraded.
Need to get 38.5 MB/38.5 MB of archives.
After this operation, 107 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libcomerr2 armhf 1.42.8-1 [56.6 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libuuid1 armhf 2.20.1-5.5 [58.0 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.4-1 [36.9 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1e-2+rpi1 [1049 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-3 [666 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-2 [949 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3-1 [29.4 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libgpg-error0 armhf 1.10-3.1 [78.5 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libgcrypt11 armhf 1.5.3-1 [297 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libp11-kit0 armhf 0.18.4-1 [109 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libtasn1-3 armhf 2.14-3 [64.1 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libgnutls26 armhf 2.12.23-5 [598 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libkeyutils1 armhf 1.5.5-7 [8024 B]
Get:15 http://172.17.0.1/private/ jessie-staging/main libkrb5support0 armhf 1.10.1+dfsg-6.1 [46.2 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libk5crypto3 armhf 1.10.1+dfsg-6.1 [113 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libkrb5-3 armhf 1.10.1+dfsg-6.1 [342 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libgssapi-krb5-2 armhf 1.10.1+dfsg-6.1 [131 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libgssrpc4 armhf 1.10.1+dfsg-6.1 [78.9 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libkadm5clnt-mit8 armhf 1.10.1+dfsg-6.1 [62.5 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libkdb5-6 armhf 1.10.1+dfsg-6.1 [60.8 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libkadm5srv-mit8 armhf 1.10.1+dfsg-6.1 [75.7 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libsasl2-modules armhf 2.1.25.dfsg1-14 [112 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libsasl2-2 armhf 2.1.25.dfsg1-14 [103 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libldap-2.4-2 armhf 2.4.31-1+nmu2 [217 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.7.17-1 [436 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-2 [836 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.3-3 [1905 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.4.9-1.1 [401 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0027+nmu1 [70.6 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.10.2-2 [251 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.10.2-2 [306 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main libjpeg8 armhf 8d-1 [132 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-4 [179 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libjbig0 armhf 2.0-2 [31.5 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libtiff4 armhf 3.9.7-1 [188 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libvpx1 armhf 1.1.0-1+rpi1 [201 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.9.1-3 [43.3 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.0-1 [191 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.0-1 [857 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libxpm4 armhf 1:3.5.10-1 [44.9 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libgd3 armhf 2.1.0-2 [157 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main mysql-common all 5.5.31+dfsg-1 [85.3 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libmysqlclient18 armhf 5.5.31+dfsg-1 [629 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libpcrecpp0 armhf 1:8.31-2 [125 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main netbase all 5.1 [20.3 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3-1 [136 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main openssl armhf 1.0.1e-2+rpi1 [699 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main libapr1 armhf 1.4.8-1 [88.7 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main uuid-dev armhf 2.20.1-5.5 [71.9 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main libapr1-dev armhf 1.4.8-1 [1082 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main libaprutil1 armhf 1.5.2-1 [88.2 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main libldap2-dev armhf 2.4.31-1+nmu2 [523 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main libexpat1-dev armhf 2.1.0-4 [210 kB]
Get:65 http://172.17.0.1/private/ jessie-staging/main libpcre3-dev armhf 1:8.31-2 [350 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main libsqlite3-dev armhf 3.7.17-1 [564 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main libpq5 armhf 9.1.9-2 [512 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
Get:69 http://172.17.0.1/private/ jessie-staging/main libssl-dev armhf 1.0.1e-2+rpi1 [1500 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main comerr-dev armhf 2.1-1.42.8-1 [42.1 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main krb5-multidev armhf 1.10.1+dfsg-6.1 [153 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main libkrb5-dev armhf 1.10.1+dfsg-6.1 [39.7 kB]
Get:73 http://172.17.0.1/private/ jessie-staging/main libpq-dev armhf 9.1.9-2 [568 kB]
Get:74 http://172.17.0.1/private/ jessie-staging/main libmysqlclient-dev armhf 5.5.31+dfsg-1 [898 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main libaprutil1-dev armhf 1.5.2-1 [657 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3-1 [1837 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:79 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20130630 [710 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main apache2-dev armhf 2.4.6-2 [263 kB]
Get:81 http://172.17.0.1/private/ jessie-staging/main libio-string-perl all 1.08-2 [12.0 kB]
Get:82 http://172.17.0.1/private/ jessie-staging/main libdata-stag-perl all 0.11-2 [509 kB]
Get:83 http://172.17.0.1/private/ jessie-staging/main libbio-perl-perl all 1.6.901-3 [6143 kB]
Get:84 http://172.17.0.1/private/ jessie-staging/main bioperl all 1.6.901-3 [467 kB]
Get:85 http://172.17.0.1/private/ jessie-staging/main ca-certificates all 20130610 [184 kB]
Get:86 http://172.17.0.1/private/ jessie-staging/main libgd-gd2-perl armhf 1:2.46-3.1 [193 kB]
Get:87 http://172.17.0.1/private/ jessie-staging/main libbio-graphics-perl all 2.33-1 [683 kB]
Get:88 http://172.17.0.1/private/ jessie-staging/main libcapture-tiny-perl all 0.22-1 [23.3 kB]
Get:89 http://172.17.0.1/private/ jessie-staging/main libcgi-session-perl all 4.48-1 [124 kB]
Get:90 http://172.17.0.1/private/ jessie-staging/main libdbi-perl armhf 1.627-1 [915 kB]
Get:91 http://172.17.0.1/private/ jessie-staging/main libdbd-sqlite3-perl armhf 1.37-1 [108 kB]
Get:92 http://172.17.0.1/private/ jessie-staging/main libencode-locale-perl all 1.03-1 [13.6 kB]
Get:93 http://172.17.0.1/private/ jessie-staging/main libhttp-date-perl all 6.02-1 [10.7 kB]
Get:94 http://172.17.0.1/private/ jessie-staging/main libfile-listing-perl all 6.04-1 [10.3 kB]
Get:95 http://172.17.0.1/private/ jessie-staging/main liburi-perl all 1.60-1 [100 kB]
Get:96 http://172.17.0.1/private/ jessie-staging/main libhtml-tagset-perl all 3.20-2 [13.5 kB]
Get:97 http://172.17.0.1/private/ jessie-staging/main libhtml-parser-perl armhf 3.71-1 [113 kB]
Get:98 http://172.17.0.1/private/ jessie-staging/main libhtml-tree-perl all 5.02-1 [225 kB]
Get:99 http://172.17.0.1/private/ jessie-staging/main libio-html-perl all 1.00-1 [18.2 kB]
Get:100 http://172.17.0.1/private/ jessie-staging/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB]
Get:101 http://172.17.0.1/private/ jessie-staging/main libhttp-message-perl all 6.06-1 [80.1 kB]
Get:102 http://172.17.0.1/private/ jessie-staging/main libhttp-cookies-perl all 6.00-2 [23.5 kB]
Get:103 http://172.17.0.1/private/ jessie-staging/main libhttp-daemon-perl all 6.01-1 [17.3 kB]
Get:104 http://172.17.0.1/private/ jessie-staging/main libhttp-negotiate-perl all 6.00-2 [13.6 kB]
Get:105 http://172.17.0.1/private/ jessie-staging/main libnet-ssleay-perl armhf 1.48-1 [317 kB]
Get:106 http://172.17.0.1/private/ jessie-staging/main libio-socket-ssl-perl all 1.93-2 [90.3 kB]
Get:107 http://172.17.0.1/private/ jessie-staging/main libjs-prototype all 1.7.1-3 [44.3 kB]
Get:108 http://172.17.0.1/private/ jessie-staging/main libjs-scriptaculous all 1.9.0-2 [129 kB]
Get:109 http://172.17.0.1/private/ jessie-staging/main libjson-perl all 2.59-1 [101 kB]
Get:110 http://172.17.0.1/private/ jessie-staging/main libnet-http-perl all 6.06-1 [24.9 kB]
Get:111 http://172.17.0.1/private/ jessie-staging/main libwww-robotrules-perl all 6.01-1 [14.3 kB]
Get:112 http://172.17.0.1/private/ jessie-staging/main libwww-perl all 6.05-1 [204 kB]
Get:113 http://172.17.0.1/private/ jessie-staging/main liblwp-protocol-https-perl all 6.04-1 [7716 B]
Get:114 http://172.17.0.1/private/ jessie-staging/main libstatistics-descriptive-perl all 3.0605-1 [42.6 kB]
Get:115 http://172.17.0.1/private/ jessie-staging/main libstring-approx-perl armhf 3.27-1 [45.7 kB]
Get:116 http://172.17.0.1/private/ jessie-staging/main libterm-readkey-perl armhf 2.30-4 [30.0 kB]
Get:117 http://172.17.0.1/private/ jessie-staging/main libxml-namespacesupport-perl all 1.09-3 [15.3 kB]
Get:118 http://172.17.0.1/private/ jessie-staging/main libxml-sax-base-perl all 1.07-1 [23.1 kB]
Get:119 http://172.17.0.1/private/ jessie-staging/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB]
Get:120 http://172.17.0.1/private/ jessie-staging/main libxml-libxml-perl armhf 2.0001+dfsg-1+rpi1 [392 kB]
Get:121 http://172.17.0.1/private/ jessie-staging/main libxml-simple-perl all 2.20-1 [74.7 kB]
Get:122 http://172.17.0.1/private/ jessie-staging/main libvm-ec2-perl all 1.23-1 [564 kB]
Get:123 http://172.17.0.1/private/ jessie-staging/main sqlite3 armhf 3.7.17-1 [129 kB]
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Unpacking libvm-ec2-perl (from .../libvm-ec2-perl_1.23-1_all.deb) ...
Selecting previously unselected package sqlite3.
Unpacking sqlite3 (from .../sqlite3_3.7.17-1_armhf.deb) ...
Selecting previously unselected package sbuild-build-depends-gbrowse-dummy.
Unpacking sbuild-build-depends-gbrowse-dummy (from .../sbuild-build-depends-gbrowse-dummy.deb) ...
Setting up libpipeline1:armhf (1.2.4-1) ...
Setting up libssl1.0.0:armhf (1.0.1e-2+rpi1) ...
Setting up groff-base (1.22.2-3) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.18.3-1) ...
Setting up libgpg-error0:armhf (1.10-3.1) ...
Setting up libgcrypt11:armhf (1.5.3-1) ...
Setting up libp11-kit0:armhf (0.18.4-1) ...
Setting up libtasn1-3:armhf (2.14-3) ...
Setting up libgnutls26:armhf (2.12.23-5) ...
Setting up libkeyutils1:armhf (1.5.5-7) ...
Setting up libkrb5support0:armhf (1.10.1+dfsg-6.1) ...
Setting up libk5crypto3:armhf (1.10.1+dfsg-6.1) ...
Setting up libkrb5-3:armhf (1.10.1+dfsg-6.1) ...
Setting up libgssapi-krb5-2:armhf (1.10.1+dfsg-6.1) ...
Setting up libgssrpc4:armhf (1.10.1+dfsg-6.1) ...
Setting up libkadm5clnt-mit8:armhf (1.10.1+dfsg-6.1) ...
Setting up libkdb5-6:armhf (1.10.1+dfsg-6.1) ...
Setting up libkadm5srv-mit8:armhf (1.10.1+dfsg-6.1) ...
Setting up libsasl2-modules:armhf (2.1.25.dfsg1-14) ...
Setting up libsasl2-2:armhf (2.1.25.dfsg1-14) ...
Setting up libldap-2.4-2:armhf (2.4.31-1+nmu2) ...
Setting up libmagic1:armhf (1:5.14-2) ...
Setting up libsqlite3-0:armhf (3.7.17-1) ...
Setting up libxml2:armhf (2.9.1+dfsg1-2) ...
Setting up libffi6:armhf (3.0.13-4) ...
Setting up libglib2.0-0:armhf (2.36.3-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libexpat1:armhf (2.1.0-4) ...
Setting up libfreetype6:armhf (2.4.9-1.1) ...
Setting up ucf (3.0027+nmu1) ...
Setting up fonts-dejavu-core (2.33+svn2514-3) ...
Setting up ttf-dejavu-core (2.33+svn2514-3) ...
Setting up fontconfig-config (2.10.2-2) ...
Setting up libfontconfig1:armhf (2.10.2-2) ...
Setting up libjpeg8:armhf (8d-1) ...
Setting up libpng12-0:armhf (1.2.49-4) ...
Setting up libjbig0:armhf (2.0-2) ...
Setting up libtiff4:armhf (3.9.7-1) ...
Setting up libvpx1:armhf (1.1.0-1+rpi1) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.1-1) ...
Setting up libxcb1:armhf (1.9.1-3) ...
Setting up libx11-data (2:1.6.0-1) ...
Setting up libx11-6:armhf (2:1.6.0-1) ...
Setting up libxpm4:armhf (1:3.5.10-1) ...
Setting up libgd3:armhf (2.1.0-2) ...
Setting up mysql-common (5.5.31+dfsg-1) ...
Setting up libmysqlclient18:armhf (5.5.31+dfsg-1) ...
Setting up libpcrecpp0:armhf (1:8.31-2) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up netbase (5.1) ...
Configuration file `/etc/protocols'
==> File on system created by you or by a script.
==> File also in package provided by package maintainer.
==> Using current old file as you requested.
Configuration file `/etc/services'
==> File on system created by you or by a script.
==> File also in package provided by package maintainer.
==> Using current old file as you requested.
Setting up file (1:5.14-2) ...
Setting up gettext-base (0.18.3-1) ...
Setting up openssl (1.0.1e-2+rpi1) ...
Setting up libapr1 (1.4.8-1) ...
Setting up uuid-dev (2.20.1-5.5) ...
Setting up libapr1-dev (1.4.8-1) ...
Setting up libaprutil1 (1.5.2-1) ...
Setting up libldap2-dev:armhf (2.4.31-1+nmu2) ...
Setting up libexpat1-dev:armhf (2.1.0-4) ...
Setting up libpcre3-dev:armhf (1:8.31-2) ...
Setting up libsqlite3-dev:armhf (3.7.17-1) ...
Setting up libpq5 (9.1.9-2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
Setting up libssl-dev (1.0.1e-2+rpi1) ...
Setting up comerr-dev (2.1-1.42.8-1) ...
Setting up krb5-multidev (1.10.1+dfsg-6.1) ...
Setting up libkrb5-dev (1.10.1+dfsg-6.1) ...
Setting up libpq-dev (9.1.9-2) ...
Setting up libmysqlclient-dev (5.5.31+dfsg-1) ...
Setting up libaprutil1-dev (1.5.2-1) ...
Setting up gettext (0.18.3-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20130630) ...
Setting up apache2-dev (2.4.6-2) ...
Setting up libio-string-perl (1.08-2) ...
Setting up libdata-stag-perl (0.11-2) ...
Setting up libbio-perl-perl (1.6.901-3) ...
Setting up bioperl (1.6.901-3) ...
Setting up ca-certificates (20130610) ...
Setting up libgd-gd2-perl (1:2.46-3.1) ...
Setting up libbio-graphics-perl (2.33-1) ...
Setting up libcapture-tiny-perl (0.22-1) ...
Setting up libcgi-session-perl (4.48-1) ...
Setting up libdbi-perl (1.627-1) ...
Setting up libdbd-sqlite3-perl (1.37-1) ...
Setting up libencode-locale-perl (1.03-1) ...
Setting up libhttp-date-perl (6.02-1) ...
Setting up libfile-listing-perl (6.04-1) ...
Setting up liburi-perl (1.60-1) ...
Setting up libhtml-tagset-perl (3.20-2) ...
Setting up libhtml-parser-perl (3.71-1) ...
Setting up libhtml-tree-perl (5.02-1) ...
Setting up libio-html-perl (1.00-1) ...
Setting up liblwp-mediatypes-perl (6.02-1) ...
Setting up libhttp-message-perl (6.06-1) ...
Setting up libhttp-cookies-perl (6.00-2) ...
Setting up libhttp-daemon-perl (6.01-1) ...
Setting up libhttp-negotiate-perl (6.00-2) ...
Setting up libnet-ssleay-perl (1.48-1) ...
Setting up libio-socket-ssl-perl (1.93-2) ...
Setting up libjs-prototype (1.7.1-3) ...
Setting up libjs-scriptaculous (1.9.0-2) ...
Setting up libjson-perl (2.59-1) ...
Setting up libnet-http-perl (6.06-1) ...
Setting up libwww-robotrules-perl (6.01-1) ...
Setting up libstatistics-descriptive-perl (3.0605-1) ...
Setting up libstring-approx-perl (3.27-1) ...
Setting up libterm-readkey-perl (2.30-4) ...
Setting up libxml-namespacesupport-perl (1.09-3) ...
Setting up libxml-sax-base-perl (1.07-1) ...
Setting up libxml-sax-perl (0.99+dfsg-2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-libxml-perl (2.0001+dfsg-1+rpi1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-simple-perl (2.20-1) ...
Setting up sqlite3 (3.7.17-1) ...
Setting up liblwp-protocol-https-perl (6.04-1) ...
Setting up libwww-perl (6.05-1) ...
Setting up libvm-ec2-perl (1.23-1) ...
Setting up sbuild-build-depends-gbrowse-dummy (0.invalid.0) ...
Processing triggers for libc-bin ...
Processing triggers for ca-certificates ...
Updating certificates in /etc/ssl/certs... 157 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....done.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.0.35-wand5.2 armhf (armv7l)
Toolchain package versions: binutils_2.23.52.20130612-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-2+rpi1 gcc-4.6_4.6.4-2+rpi1 libc6-dev_2.17-6+rpi1 libstdc++6_4.8.0-7+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 linux-libc-dev_3.2.41-2+rpi1
Package versions: apache2-dev_2.4.6-2 apt_0.9.7.8+rpi1 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.23.52.20130612-1 bioperl_1.6.901-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.4 build-essential_11.6 bzip2_1.0.6-4 ca-certificates_20130610 comerr-dev_2.1-1.42.8-1 coreutils_8.13-3.5 cpio_2.11+dfsg-1 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2+rpi1 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130630 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-5 fontconfig-config_2.10.2-2 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-2+rpi1 gcc-4.6-base_4.6.4-2+rpi1 gcc-4.7-base_4.7.3-4+rpi1 gcc-4.8-base_4.8.0-7+rpi1 gettext_0.18.3-1 gettext-base_0.18.3-1 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-2 groff-base_1.22.2-3 gzip_1.6-1 hostname_3.13 initramfs-tools_0.113 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 krb5-multidev_1.10.1+dfsg-6.1 libacl1_2.2.52-1 libapr1_1.4.8-1 libapr1-dev_1.4.8-1 libaprutil1_1.5.2-1 libaprutil1-dev_1.5.2-1 libapt-pkg4.12_0.9.7.8+rpi1 libasprintf0c2_0.18.3-1 libattr1_1:2.4.47-1 libbio-graphics-perl_2.33-1 libbio-perl-perl_1.6.901-3 libblkid1_2.20.1-5.4 libbz2-1.0_1.0.6-4 libc-bin_2.17-6+rpi1 libc-dev-bin_2.17-6+rpi1 libc6_2.17-6+rpi1 libc6-dev_2.17-6+rpi1 libcap2_1:2.22-1.2 libcapture-tiny-perl_0.22-1 libcgi-session-perl_4.48-1 libclass-isa-perl_0.36-5 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libdata-stag-perl_0.11-2 libdb5.1_5.1.29-6 libdbd-sqlite3-perl_1.37-1 libdbi-perl_1.627-1 libdbus-1-3_1.6.12-1 libdpkg-perl_1.16.10 libencode-locale-perl_1.03-1 libexpat1_2.1.0-4 libexpat1-dev_2.1.0-4 libffi6_3.0.13-4 libfile-listing-perl_6.04-1 libfontconfig1_2.10.2-2 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.8.0-7+rpi1 libgcrypt11_1.5.3-1 libgd-gd2-perl_1:2.46-3.1 libgd3_2.1.0-2 libgdbm3_1.8.3-12 libglib2.0-0_2.36.3-3 libgmp10_2:5.1.2+dfsg-1 libgnutls26_2.12.23-5 libgomp1_4.8.0-7+rpi1 libgpg-error0_1.10-3.1 libgssapi-krb5-2_1.10.1+dfsg-6.1 libgssrpc4_1.10.1+dfsg-6.1 libhtml-parser-perl_3.71-1 libhtml-tagset-perl_3.20-2 libhtml-tree-perl_5.02-1 libhttp-cookies-perl_6.00-2 libhttp-daemon-perl_6.01-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.06-1 libhttp-negotiate-perl_6.00-2 libio-html-perl_1.00-1 libio-socket-ssl-perl_1.93-2 libio-string-perl_1.08-2 libjbig0_2.0-2 libjpeg8_8d-1 libjs-prototype_1.7.1-3 libjs-scriptaculous_1.9.0-2 libjson-perl_2.59-1 libk5crypto3_1.10.1+dfsg-6.1 libkadm5clnt-mit8_1.10.1+dfsg-6.1 libkadm5srv-mit8_1.10.1+dfsg-6.1 libkdb5-6_1.10.1+dfsg-6.1 libkeyutils1_1.5.5-7 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 libkrb5-3_1.10.1+dfsg-6.1 libkrb5-dev_1.10.1+dfsg-6.1 libkrb5support0_1.10.1+dfsg-6.1 libldap-2.4-2_2.4.31-1+nmu2 libldap2-dev_2.4.31-1+nmu2 liblocale-gettext-perl_1.05-7 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.04-1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libmysqlclient-dev_5.5.31+dfsg-1 libmysqlclient18_5.5.31+dfsg-1 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnet-http-perl_6.06-1 libnet-ssleay-perl_1.48-1 libnih-dbus1_1.0.3-4.1+b1 libnih1_1.0.3-4.1+b1 libp11-kit0_0.18.4-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.4-1 libpng12-0_1.2.49-4 libpq-dev_9.1.9-2 libpq5_9.1.9-2 libprocps0_1:3.3.4-2 libreadline6_6.2+dfsg-0.1 libsasl2-2_2.1.25.dfsg1-14 libsasl2-modules_2.1.25.dfsg1-14 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libsqlite3-0_3.7.17-1 libsqlite3-dev_3.7.17-1 libss2_1.42.5-1.1 libssl-dev_1.0.1e-2+rpi1 libssl1.0.0_1.0.1e-2+rpi1 libstatistics-descriptive-perl_3.0605-1 libstdc++6_4.8.0-7+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 libstring-approx-perl_3.27-1 libswitch-perl_2.16-2 libtasn1-3_2.14-3 libterm-readkey-perl_2.30-4 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtiff4_3.9.7-1 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libudev0_175-7.2 libunistring0_0.9.3-5 liburi-perl_1.60-1 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libvm-ec2-perl_1.23-1 libvpx1_1.1.0-1+rpi1 libwww-perl_6.05-1 libwww-robotrules-perl_6.01-1 libx11-6_2:1.6.0-1 libx11-data_2:1.6.0-1 libxau6_1:1.0.8-1 libxcb1_1.9.1-3 libxdmcp6_1:1.1.1-1 libxml-libxml-perl_2.0001+dfsg-1+rpi1 libxml-namespacesupport-perl_1.09-3 libxml-sax-base-perl_1.07-1 libxml-sax-perl_0.99+dfsg-2 libxml-simple-perl_2.20-1 libxml2_2.9.1+dfsg1-2 libxpm4_1:3.5.10-1 linux-libc-dev_3.2.41-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 make_3.81-8.2 makedev_2.3.1-93 man-db_2.6.5-2 mawk_1.3.3-17 mount_2.20.1-5.4 mountall_2.48 multiarch-support_2.17-6+rpi1 mysql-common_5.5.31+dfsg-1 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 netbase_5.1 openssl_1.0.1e-2+rpi1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21+rpi1 perl-base_5.14.2-21+rpi1 perl-modules_5.14.2-21+rpi1 plymouth_0.8.8-6+deb8u1 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gbrowse-dummy_0.invalid.0 sed_4.2.2-1 sensible-utils_0.0.9 sqlite3_3.7.17-1 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-6 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013c-2 ucf_3.0027+nmu1 udev_175-7.2 util-linux_2.20.1-5.4 uuid-dev_2.20.1-5.5 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri May 31 12:24:50 2013 UTC using RSA key ID 326D8438
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./gbrowse_2.54+dfsg-2.dsc
dpkg-source: info: extracting gbrowse in gbrowse-2.54+dfsg
dpkg-source: info: unpacking gbrowse_2.54+dfsg.orig.tar.bz2
dpkg-source: info: unpacking gbrowse_2.54+dfsg-2.debian.tar.gz
dpkg-source: info: applying debian-packaging-patch
dpkg-source: info: applying gbrowse-slave-fix_defaults_path
dpkg-source: info: applying manpages.patch
dpkg-source: info: applying fix_pop_url
dpkg-source: info: applying skipRenderFarmTest_UpstreamBug12
dpkg-source: info: applying skip_check_installed_test.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
COLUMNS=80
CONSOLE=/dev/console
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INIT_VERSION=sysvinit-2.88
LC_ALL=POSIX
LINES=24
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PREVLEVEL=N
PWD=/
RUNLEVEL=2
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-1fbd654b-d636-4af2-85e0-02d6be9202ff
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
previous=N
runlevel=2
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package gbrowse
dpkg-buildpackage: source version 2.54+dfsg-2
dpkg-source --before-build gbrowse-2.54+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with apache2
dh_testdir
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch --with apache2
dh_testdir -a
debian/rules override_dh_auto_configure
make[1]: Entering directory `/«BUILDDIR»/gbrowse-2.54+dfsg'
dh_auto_configure -- --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse
Checking prerequisites...
recommends:
* Bio::DB::BigFile is not installed
* Bio::DB::Sam is not installed
* Bio::Das is not installed
* Crypt::SSLeay is not installed
* DBD::Pg is not installed
* DBD::mysql is not installed
* DB_File::Lock is not installed
* FCGI is not installed
* File::NFSLock is not installed
* GD::SVG is not installed
* Net::OpenID::Consumer is not installed
* Net::SMTP::SSL is not installed
* Parse::Apache::ServerStatus is not installed
* Template is not installed
* Do not worry if some "recommended" prerequisites are missing. You can install *
* them later if you need the features they provide. Do not proceed with the *
* install if any of "REQUIRED" prerequisites are missing. *
* *
* The optional Safe::World module does not currently run on Perl 5.10 or *
* higher, and so cannot be installed. *
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
Run 'Build installdeps' to install missing prerequisites.
**** WARNING *****************************************************************************************
If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please
set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to
create/update your user account database.
See /etc/gbrowse2/GBrowse.conf.new for suggested settings.
******************************************************************************************************
Now run:
./Build test
./Build demo (optional)
./Build install (as superuser/administrator)
-or-
./Build install_slave (optional, for slave installations)
Other useful targets:
./Build register (to register your copy of GBrowse)
./Build reconfig (to reconfigure install locations)
./Build demostop (to stop the demo)
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'GBrowse' version '2.54'
make[1]: Leaving directory `/«BUILDDIR»/gbrowse-2.54+dfsg'
dh_auto_build -a
NOTE: Run ./Build reconfig to change existing configuration.
Building GBrowse
cc -I/«BUILDDIR»/gbrowse-2.54+dfsg/libalign -I/usr/lib/perl/5.14/CORE -DXS_VERSION="2.54" -DVERSION="2.54" -fPIC -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g -o lib/Bio/Graphics/Browser2/CAlign.o lib/Bio/Graphics/Browser2/CAlign.c
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs')
cc -shared -L/usr/local/lib -fstack-protector -o blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.so lib/Bio/Graphics/Browser2/CAlign.o
Performing variable substitutions in blib/conf/detail_select_menu.conf
Performing variable substitutions in blib/conf/enzymes.txt
Performing variable substitutions in blib/conf/GBrowse.conf
Performing variable substitutions in blib/conf/log4perl.conf
Performing variable substitutions in blib/conf/MobyServices/moby.conf
Performing variable substitutions in blib/conf/pop_demo.conf
Performing variable substitutions in blib/conf/renderfarm.conf
Performing variable substitutions in blib/conf/slave_preload.conf
Performing variable substitutions in blib/conf/submitter_plugin.conf
Performing variable substitutions in blib/conf/synteny/rice_synteny.conf
Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf
Performing variable substitutions in blib/conf/themes/solid_gray_colors
Performing variable substitutions in blib/conf/themes/transparent_colors
Performing variable substitutions in blib/conf/themes/warm_colors
Performing variable substitutions in blib/conf/volvox.conf
Performing variable substitutions in blib/conf/yeast_chr1+2.conf
Performing variable substitutions in blib/conf/yeast_renderfarm.conf
Performing variable substitutions in blib/conf/yeast_simple.conf
Performing variable substitutions in blib/htdocs/annotation_help.html
Performing variable substitutions in blib/htdocs/cloud_index.html
Performing variable substitutions in blib/htdocs/example_scripts/index.html
Performing variable substitutions in blib/htdocs/example_scripts/README
Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html
Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html
Performing variable substitutions in blib/htdocs/general_help.html
Performing variable substitutions in blib/htdocs/index.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf
Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html
Performing variable substitutions in blib/htdocs/vbox_index.html
Use of uninitialized value in pattern match (m//) at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 728.
dh_auto_test -a
NOTE: Run ./Build reconfig to change existing configuration.
Use of uninitialized value in pattern match (m//) at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 728.
t/00.compile.t ............ ok
t/01.yeast.t .............. ok
t/02.rearchitecture.t ..... ok
t/03.render.t ............. skipped: (no reason given)
Sometimes this test gets 'stuck'. If this happens, kill the test and Build test again.
t/04.remoteserver.t ....... skipped: (no reason given)
t/05.deferredrendering.t .. ok
t/06.featuresearch.t ...... skipped: (no reason given)
t/07.karyotype.t .......... ok
t/08.calign.t ............. ok
All tests successful.
Files=9, Tests=225, 80 wallclock secs ( 0.32 usr 0.10 sys + 63.47 cusr 6.04 csys = 69.93 CPU)
Result: PASS
fakeroot debian/rules binary-arch
dh binary-arch --with apache2
dh_testroot -a
dh_prep -a
dh_installdirs -a
debian/rules override_dh_auto_install
make[1]: Entering directory `/«BUILDDIR»/gbrowse-2.54+dfsg'
./Build --install_base=debian/gbrowse debianinstall
NOTE: Run ./Build reconfig to change existing configuration.
Use of uninitialized value in pattern match (m//) at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 728.
Building GBrowse
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.so
Installing debian/gbrowse/man/man1/gtf2gff3.pl.1p
Installing debian/gbrowse/man/man1/bed2gff3.pl.1p
Installing debian/gbrowse/man/man1/wiggle2gff3.pl.1p
Installing debian/gbrowse/man/man1/load_genbank.pl.1p
Installing debian/gbrowse/man/man1/make_das_conf.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_clean.pl.1p
Installing debian/gbrowse/man/man1/gbrowse_grow_cloud_vol.pl.1p
Installing debian/gbrowse/man/man1/ucsc_genes2gff.pl.1p
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/das
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbgff
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_details
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_gmap
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_img
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_key_img
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_login
Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_syn
Installing debian/gbrowse/etc/gbrowse/detail_select_menu.conf
Installing debian/gbrowse/etc/gbrowse/enzymes.txt
Installing debian/gbrowse/etc/gbrowse/GBrowse.conf
Installing debian/gbrowse/etc/gbrowse/log4perl.conf
Installing debian/gbrowse/etc/gbrowse/pop_demo.conf
Installing debian/gbrowse/etc/gbrowse/renderfarm.conf
Installing debian/gbrowse/etc/gbrowse/slave_preload.conf
Installing debian/gbrowse/etc/gbrowse/submitter_plugin.conf
Installing debian/gbrowse/etc/gbrowse/volvox.conf
Installing debian/gbrowse/etc/gbrowse/yeast_chr1+2.conf
Installing debian/gbrowse/etc/gbrowse/yeast_renderfarm.conf
Installing debian/gbrowse/etc/gbrowse/yeast_simple.conf
Installing debian/gbrowse/etc/gbrowse/languages/de.pm
Installing debian/gbrowse/etc/gbrowse/languages/en.pm
Installing debian/gbrowse/etc/gbrowse/languages/es.pm
Installing debian/gbrowse/etc/gbrowse/languages/fr.pm
Installing debian/gbrowse/etc/gbrowse/languages/is.pm
Installing debian/gbrowse/etc/gbrowse/languages/it.pm
Installing debian/gbrowse/etc/gbrowse/languages/ja.pm
Installing debian/gbrowse/etc/gbrowse/languages/ko.pm
Installing debian/gbrowse/etc/gbrowse/languages/nl.pm
Installing debian/gbrowse/etc/gbrowse/languages/pl.pm
Installing debian/gbrowse/etc/gbrowse/languages/POSIX.pm
Installing debian/gbrowse/etc/gbrowse/languages/ru.pm
Installing debian/gbrowse/etc/gbrowse/languages/zh.pm
Installing debian/gbrowse/etc/gbrowse/languages/zh_cn.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_gif_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_jpeg_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.PMS
Installing debian/gbrowse/etc/gbrowse/MobyServices/moby.conf
Installing debian/gbrowse/etc/gbrowse/MobyServices/text_formatted_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/text_html_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/text_plain_renderer.pm
Installing debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm
Installing debian/gbrowse/etc/gbrowse/plugins/Aligner.pm
Installing debian/gbrowse/etc/gbrowse/plugins/AlignTwoSequences.pm
Installing debian/gbrowse/etc/gbrowse/plugins/AttributeHiliter.pm
Installing debian/gbrowse/etc/gbrowse/plugins/BatchDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/Blat.pm
Installing debian/gbrowse/etc/gbrowse/plugins/CMapDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/CreateBlastDB.pm
Installing debian/gbrowse/etc/gbrowse/plugins/FastaDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/FBTableDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/FilterTest.pm
Installing debian/gbrowse/etc/gbrowse/plugins/GeneFinder.pm
Installing debian/gbrowse/etc/gbrowse/plugins/LDAPAuthenticate.pm
Installing debian/gbrowse/etc/gbrowse/plugins/OligoFinder.pm
Installing debian/gbrowse/etc/gbrowse/plugins/PamAuthenticate.pm
Installing debian/gbrowse/etc/gbrowse/plugins/PrimerDesigner.pm
Installing debian/gbrowse/etc/gbrowse/plugins/ProteinDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/RandomGene.pm
Installing debian/gbrowse/etc/gbrowse/plugins/RestrictionAnnotator.pm
Installing debian/gbrowse/etc/gbrowse/plugins/SequenceDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/SimpleTrackFinder.pm
Installing debian/gbrowse/etc/gbrowse/plugins/SinWave.pm
Installing debian/gbrowse/etc/gbrowse/plugins/SourceTrackFinder.pm
Installing debian/gbrowse/etc/gbrowse/plugins/Spectrogram.pm
Installing debian/gbrowse/etc/gbrowse/plugins/Submitter.pm
Installing debian/gbrowse/etc/gbrowse/plugins/test.pm
Installing debian/gbrowse/etc/gbrowse/plugins/TestAuthenticator.pm
Installing debian/gbrowse/etc/gbrowse/plugins/TestFinder.pm
Installing debian/gbrowse/etc/gbrowse/plugins/TrackDumper.pm
Installing debian/gbrowse/etc/gbrowse/plugins/TrackFinder.pm
Installing debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled
Installing debian/gbrowse/etc/gbrowse/synteny/rice_synteny.conf
Installing debian/gbrowse/etc/gbrowse/synteny/wild_rice_synteny.conf
Installing debian/gbrowse/etc/gbrowse/themes/solid_gray_colors
Installing debian/gbrowse/etc/gbrowse/themes/transparent_colors
Installing debian/gbrowse/etc/gbrowse/themes/warm_colors
Installing debian/gbrowse/var/lib/gbrowse/databases/admin_uploads/README
Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/alignments/rice.aln.gz
Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/rice/rice.gff3
Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/wild_rice/wild_rice.gff3
Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/human_cytobands.gff
Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/mouse_cytobands.gff
Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/rat_cytobands.gff
Installing debian/gbrowse/var/lib/gbrowse/databases/pop_demo/pop_demo.gff3
Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_chr1+2/yeast_chr1+2.gff3
Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chr1.fa
Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chr2.fa
Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chromosomes.gff3
Installing debian/gbrowse/usr/share/gbrowse/htdocs/annotation_help.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/cloud_index.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/gbrowse_karyotype_help.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/gbrowse_syn_help.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/general_help.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/general_help.html.zh
Installing debian/gbrowse/usr/share/gbrowse/htdocs/gmod_cog.jpeg
Installing debian/gbrowse/usr/share/gbrowse/htdocs/index.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/vbox_index.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_autocomplete.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_elements.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_solid.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_transparent.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_warm.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/karyotype.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/menulink.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/menulink_active.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/snapshots.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/subtracktable.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/titlebar-default.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/titlebar-safari.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/tracks.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/default_theme.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/dropdown.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/helper.css
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/favicon.ico
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/icon.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down-on.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down-open.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-on.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-open.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right-on.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right-open.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up-on.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up-open.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern1.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern2.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern3.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_get_sessionid.pl
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_new_sessionid.pl
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_data.pl
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_file.pl
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/index.html
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/README
Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/test_file.bed
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/backgrounds/cloud.jpg
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/backgrounds/lrock005.jpg
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/backgrounds/steel.jpg
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/balloon.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/balloon_ie.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/close.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/down_left.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/down_right.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/up_left.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/up_right.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/balloon.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/close.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/down_left.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/down_right.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/up_left.png
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Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/ajax-loader.gif
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/blue_peaks.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/check.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/cursor-ewmove.ico
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/dark_0.4_pixel.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/download.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/empty.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/ex.png
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Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/fmini.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/fmini_2.png
Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green.gif
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Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SendMail.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Session.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RegionSearch.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PadAlignment.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Region.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/GFFhelper.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RemoteSet.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RenderPanels.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PluginSet.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/OptionPick.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Realign.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Util.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Shellwords.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/ExternalData.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SubtrackTable.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataBase.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Markup.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataSource.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Action.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/SnapshotManager.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/TrackConfig.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Login.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave/Status.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/featurefile.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bigwig.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bam.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/generic.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/sam.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bed.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/wiggle.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff3.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Filesystem.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Database.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/Tag.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/mysql.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/wormbase_gene.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/reftranscript.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/waba_alignment.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/match_gap.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/Alias.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/BedLoader.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/CGI/Toggle.pm
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataBase.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RegionSearch.3pm
Installing debian/gbrowse/man/man3/Bio::DB::Tagger.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Markup.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::OptionPick.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PluginSet.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataSource.3pm
Installing debian/gbrowse/man/man3/CGI::Toggle.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin::AuthPlugin.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::waba_alignment.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Realign.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm
Installing debian/gbrowse/man/man3/Bio::DB::SeqFeature::Store::Alias.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::match_gap.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::GFFhelper.3pm
Installing debian/gbrowse/man/man3/Legacy::Graphics::Browser.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Util.3pm
Installing debian/gbrowse/man/man3/GBrowse::ConfigData.3pm
Installing debian/gbrowse/man/man3/Bio::DB::Tagger::Tag.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::AuthorizedFeatureFile.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm
Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::wormbase_gene.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Region.3pm
Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin.3pm
Installing debian/gbrowse/bin/gbrowse_syn_load_alignment_database.pl
Installing debian/gbrowse/bin/gbrowse_syn_load_alignments_msa.pl
Installing debian/gbrowse/bin/ucsc_genes2gff.pl
Installing debian/gbrowse/bin/load_genbank.pl
Installing debian/gbrowse/bin/gbrowse_launch_aws_slaves.pl
Installing debian/gbrowse/bin/gbrowse_import_ucsc_db.pl
Installing debian/gbrowse/bin/gtf2gff3.pl
Installing debian/gbrowse/bin/gbrowse_grow_cloud_vol.pl
Installing debian/gbrowse/bin/scan_gbrowse.pl
Installing debian/gbrowse/bin/gbrowse_metadb_config.pl
Installing debian/gbrowse/bin/gbrowse_clean.pl
Installing debian/gbrowse/bin/gbrowse_change_passwd.pl
Installing debian/gbrowse/bin/wiggle2gff3.pl
Installing debian/gbrowse/bin/gbrowse_set_admin_passwd.pl
Installing debian/gbrowse/bin/gbrowse_slave
Installing debian/gbrowse/bin/gbrowse_configure_slaves.pl
Installing debian/gbrowse/bin/make_das_conf.pl
Installing debian/gbrowse/bin/bed2gff3.pl
Installing debian/gbrowse/bin/gbrowse_create_account.pl
#./Build apache_conf > debian/gbrowse/etc/gbrowse/gbrowse_apache2.conf
perl Build.PL --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse --installetc=y
Checking prerequisites...
recommends:
* Bio::DB::BigFile is not installed
* Bio::DB::Sam is not installed
* Bio::Das is not installed
* Crypt::SSLeay is not installed
* DBD::Pg is not installed
* DBD::mysql is not installed
* DB_File::Lock is not installed
* FCGI is not installed
* File::NFSLock is not installed
* GD::SVG is not installed
* Net::OpenID::Consumer is not installed
* Net::SMTP::SSL is not installed
* Parse::Apache::ServerStatus is not installed
* Template is not installed
* Do not worry if some "recommended" prerequisites are missing. You can install *
* them later if you need the features they provide. Do not proceed with the *
* install if any of "REQUIRED" prerequisites are missing. *
* *
* The optional Safe::World module does not currently run on Perl 5.10 or *
* higher, and so cannot be installed. *
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
Run 'Build installdeps' to install missing prerequisites.
**** WARNING *****************************************************************************************
If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please
set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to
create/update your user account database.
See /etc/gbrowse2/GBrowse.conf.new for suggested settings.
******************************************************************************************************
NOTE: Run ./Build reconfig to change existing configuration.
Now run:
./Build test
./Build demo (optional)
./Build install (as superuser/administrator)
-or-
./Build install_slave (optional, for slave installations)
Other useful targets:
./Build register (to register your copy of GBrowse)
./Build reconfig (to reconfigure install locations)
./Build demostop (to stop the demo)
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'GBrowse' version '2.54'
./Build --install_base=debian/gbrowse install_slave
NOTE: Run ./Build reconfig to change existing configuration.
Performing variable substitutions in blib/conf/detail_select_menu.conf
Performing variable substitutions in blib/conf/enzymes.txt
Performing variable substitutions in blib/conf/GBrowse.conf
Performing variable substitutions in blib/conf/log4perl.conf
Performing variable substitutions in blib/conf/MobyServices/moby.conf
Performing variable substitutions in blib/conf/pop_demo.conf
Performing variable substitutions in blib/conf/renderfarm.conf
Performing variable substitutions in blib/conf/slave_preload.conf
Performing variable substitutions in blib/conf/submitter_plugin.conf
Performing variable substitutions in blib/conf/synteny/rice_synteny.conf
Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf
Performing variable substitutions in blib/conf/themes/solid_gray_colors
Performing variable substitutions in blib/conf/themes/transparent_colors
Performing variable substitutions in blib/conf/themes/warm_colors
Performing variable substitutions in blib/conf/volvox.conf
Performing variable substitutions in blib/conf/yeast_chr1+2.conf
Performing variable substitutions in blib/conf/yeast_renderfarm.conf
Performing variable substitutions in blib/conf/yeast_simple.conf
Performing variable substitutions in blib/htdocs/annotation_help.html
Performing variable substitutions in blib/htdocs/cloud_index.html
Performing variable substitutions in blib/htdocs/example_scripts/index.html
Performing variable substitutions in blib/htdocs/example_scripts/README
Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html
Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html
Performing variable substitutions in blib/htdocs/general_help.html
Performing variable substitutions in blib/htdocs/index.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf
Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html
Performing variable substitutions in blib/htdocs/vbox_index.html
Performing variable substitutions in blib/etc/default/gbrowse-slave
Performing variable substitutions in blib/etc/init.d/gbrowse-slave
Use of uninitialized value $wwwuser in substitution (s///) at /«BUILDDIR»/gbrowse-2.54+dfsg/install_util/GBrowseInstall.pm line 821, <GEN96> line 20.
Building GBrowse
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing debian/gbrowse/etc/default/gbrowse-slave
Installing debian/gbrowse/etc/init.d/gbrowse-slave
Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm
mv debian/gbrowse/lib/perl5/* debian/gbrowse/usr/share/perl5
# Remove arch dependant data
mv debian/gbrowse/usr/share/perl5/auto/Bio/Graphics/Browser2/CAlign/* debian/gbrowse-calign/usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/
mv debian/gbrowse/usr/share/perl5/Bio/Graphics/Browser2/CAlign.pm debian/gbrowse-calign/usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm
rm -rf debian/gbrowse/lib
rm -f debian/gbrowse/usr/share/doc/gbrowse/INSTALL
rm -f debian/gbrowse/usr/share/perl5/auto/GBrowse/.packlist
rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/prototype.js
rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/scriptaculous.js
chmod 644 debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm
chmod 644 debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled
#Remove database (kept as separate package)
rm -rf debian/gbrowse/var/lib/gbrowse/databases/*
#Rename pl scripts in bin
rename 's/\.pl//' debian/gbrowse/bin/*.pl
mv debian/gbrowse/bin debian/gbrowse/usr/bin
# Activate configuration files.
find /«BUILDDIR»/gbrowse-2.54+dfsg/debian/gbrowse/etc -name '*.new' | xargs rename 's/.new//'
rm -rf /«BUILDDIR»/gbrowse-2.54+dfsg/debian/gbrowse/usr/share/perl5/auto
# Update conf files
sed -i 's/gbrowse2/gbrowse/g' /«BUILDDIR»/gbrowse-2.54+dfsg/debian/gbrowse/etc/gbrowse/yeast*.conf
sed -i 's/gbrowse2/gbrowse/g' /«BUILDDIR»/gbrowse-2.54+dfsg/debian/gbrowse/etc/gbrowse/slave*.conf
make[1]: Leaving directory `/«BUILDDIR»/gbrowse-2.54+dfsg'
dh_apache2 -a
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory `/«BUILDDIR»/gbrowse-2.54+dfsg'
#Rename due to perl extension seen as polish
rename 's/\.pl\.1p/\.1p/' debian/gbrowse/man/man1/*.pl.1p
mkdir -p debian/gbrowse-calign/man/man3/
mv debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm debian/gbrowse-calign/man/man3/Bio::Graphics::Browser2::CAlign.3pm
dh_installman
rm -rf debian/gbrowse/man
rm -rf debian/gbrowse-calign/man
make[1]: Leaving directory `/«BUILDDIR»/gbrowse-2.54+dfsg'
dh_perl -a
dh_link -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
debian/rules override_dh_builddeb
make[1]: Entering directory `/«BUILDDIR»/gbrowse-2.54+dfsg'
dh_builddeb -- -Zbzip2
dpkg-deb: building package `gbrowse-calign' in `../gbrowse-calign_2.54+dfsg-2_armhf.deb'.
make[1]: Leaving directory `/«BUILDDIR»/gbrowse-2.54+dfsg'
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../gbrowse_2.54+dfsg-2_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build gbrowse-2.54+dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130803-0236
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
gbrowse_2.54+dfsg-2_armhf.changes:
──────────────────────────────────
Format: 1.8
Date: Sat, 25 May 2013 11:46:26 +0200
Source: gbrowse
Binary: gbrowse gbrowse-data gbrowse-calign
Architecture: armhf
Version: 2.54+dfsg-2
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Olivier Sallou <osallou@debian.org>
Description:
gbrowse - GMOD Generic Genome Browser
gbrowse-calign - CAlign helper
gbrowse-data - Sample data to use GBrowse
Closes: 669830
Changes:
gbrowse (2.54+dfsg-2) unstable; urgency=low
.
* Transition to apache 2.4 (Closes: #669830).
Checksums-Sha1:
773716facb1771901e5658e40da4f8036a95b28b 35988 gbrowse-calign_2.54+dfsg-2_armhf.deb
Checksums-Sha256:
c2d7ba53c26d1ed599bd27c735d3c932cf7b3a4cfe961f45460e0b652e42fd0c 35988 gbrowse-calign_2.54+dfsg-2_armhf.deb
Files:
2cc8f22fece51c663d22d3a942f27be9 35988 science optional gbrowse-calign_2.54+dfsg-2_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
gbrowse-calign_2.54+dfsg-2_armhf.deb
────────────────────────────────────
new debian package, version 2.0.
size 35988 bytes: control archive=737 bytes.
460 bytes, 13 lines control
588 bytes, 7 lines md5sums
Package: gbrowse-calign
Source: gbrowse
Version: 2.54+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 49
Depends: perl (>= 5.14.2-21+rpi1), perlapi-5.14.2, libc6 (>= 2.4), gbrowse
Section: science
Priority: optional
Homepage: http://www.gbrowse.org/
Description: CAlign helper
This package provides the CAlign helper
for use with Realign. It speeds up Smith-Waterman alignment.
drwxr-xr-x root/root 0 2013-08-03 02:35 ./
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/lib/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/lib/perl5/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/lib/perl5/auto/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/lib/perl5/auto/Bio/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/lib/perl5/auto/Bio/Graphics/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/
-rw-r--r-- root/root 0 2013-08-03 02:34 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs
-rw-r--r-- root/root 7800 2013-08-03 02:35 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/CAlign.so
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/lib/perl5/Bio/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/lib/perl5/Bio/Graphics/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/lib/perl5/Bio/Graphics/Browser2/
-rw-r--r-- root/root 1129 2013-08-03 02:33 ./usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/share/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/share/doc/gbrowse-calign/
-rw-r--r-- root/root 18227 2012-02-19 14:48 ./usr/share/doc/gbrowse-calign/copyright
-rw-r--r-- root/root 985 2013-05-31 12:22 ./usr/share/doc/gbrowse-calign/changelog.Debian.gz
-rw-r--r-- root/root 18924 2012-12-11 15:44 ./usr/share/doc/gbrowse-calign/changelog.gz
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/share/man/
drwxr-xr-x root/root 0 2013-08-03 02:35 ./usr/share/man/man3/
-rw-r--r-- root/root 2080 2013-08-03 02:35 ./usr/share/man/man3/Bio::Graphics::Browser2::CAlign.3pm.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 29561
Build-Time: 140
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 1050
Job: gbrowse_2.54+dfsg-2
Machine Architecture: armhf
Package: gbrowse
Package-Time: 1260
Source-Version: 2.54+dfsg-2
Space: 29561
Status: successful
Version: 2.54+dfsg-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20130803-0236
Build needed 00:21:00, 29561k disc space