gatb-core →
1.4.2+dfsg-1 →
armhf → 2020-05-22 22:07:57
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| gatb-core 1.4.2+dfsg-1 (armhf) Fri, 22 May 2020 18:44:33 +0000 |
+==============================================================================+
Package: gatb-core
Version: 1.4.2+dfsg-1
Source Version: 1.4.2+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-2c26a526-82f4-4d54-aa11-c00f981f0801' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 25s (985 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/gatb-core.git
Please use:
git clone https://salsa.debian.org/med-team/gatb-core.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3048 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main gatb-core 1.4.2+dfsg-1 (dsc) [2295 B]
Get:2 http://172.17.0.1/private bullseye-staging/main gatb-core 1.4.2+dfsg-1 (tar) [2945 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main gatb-core 1.4.2+dfsg-1 (diff) [101 kB]
Fetched 3048 kB in 1s (4948 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/gatb-core-ilXJdv/gatb-core-1.4.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gatb-core-ilXJdv' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-13uELx/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-13uELx/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-13uELx/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2657 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12234 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz
Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz
dpkg-deb: building package 'sbuild-build-depends-gatb-core-dummy' in '/<<BUILDDIR>>/resolver-13uELx/apt_archive/sbuild-build-depends-gatb-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-gatb-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ Sources [543 B]
Get:5 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ Packages [626 B]
Fetched 2502 B in 1s (3362 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install gatb-core build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz
groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libboost-dev libboost1.67-dev libbrotli1
libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-9 libcppunit-1.15-0
libcppunit-dev libcroco3 libcurl4 libdatrie1 libdebhelper-perl libedit2
libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3
libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libice6 libicu63 libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp-dev libjsoncpp1
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libllvm9
libltdl7 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1
libpixman-1-0 libpng16-16 libprocps8 libpsl5 librhash0 librtmp1 libsigsegv2
libsm6 libssh2-1 libssl1.1 libsub-override-perl libsz2 libthai-data libthai0
libtiff5 libtinfo5 libtool libuchardet0 libuv1 libwebp6 libx11-6 libx11-data
libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libz3-4 m4 man-db
po-debconf procps sensible-utils ucf x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui
gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff
lrzip libboost-doc libboost1.67-doc libboost-atomic1.67-dev
libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev
libboost-contract1.67-dev libboost-coroutine1.67-dev
libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
libcppunit-doc libgd-tools krb5-doc krb5-user libhdf5-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx fonts-liberation ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales
libgpm2 publicsuffix libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz
groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libboost-dev libboost1.67-dev libbrotli1
libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-9 libcppunit-1.15-0
libcppunit-dev libcroco3 libcurl4 libdatrie1 libdebhelper-perl libedit2
libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3
libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libice6 libicu63 libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp-dev libjsoncpp1
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libllvm9
libltdl7 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1
libpixman-1-0 libpng16-16 libprocps8 libpsl5 librhash0 librtmp1 libsigsegv2
libsm6 libssh2-1 libssl1.1 libsub-override-perl libsz2 libthai-data libthai0
libtiff5 libtinfo5 libtool libuchardet0 libuv1 libwebp6 libx11-6 libx11-data
libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libz3-4 m4 man-db
po-debconf procps sbuild-build-depends-gatb-core-dummy sensible-utils ucf
x11-common zlib1g-dev
0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded.
Need to get 83.9 MB of archives.
After this operation, 418 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-13uELx/apt_archive ./ sbuild-build-depends-gatb-core-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.16.3-3+rpi1 [1628 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.2-1 [294 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6.1 [255 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7+rpi1 [61.5 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7+rpi1 [112 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7+rpi1 [318 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7+rpi1 [135 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1 [53.9 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1 [286 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.9-1 [133 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.35.0-2 [115 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.16.3-3+rpi1 [2653 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf d-shlibs all 0.91 [17.6 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13 [184 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.0-1 [14.8 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13 [1002 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-1 [79.2 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libz3-4 armhf 4.8.7-4 [5477 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libllvm9 armhf 1:9.0.1-12+rpi1 [13.1 MB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libclang1-9 armhf 1:9.0.1-12+rpi1 [5584 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libxapian30 armhf 1.4.15-1 [951 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf doxygen armhf 1.8.17-1 [7672 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libcdt5 armhf 2.42.2-4 [58.4 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libcgraph6 armhf 2.42.2-4 [78.1 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.9-2 [298 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.9-2 [692 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libgd3 armhf 2.3.0-2 [116 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-4 [134 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2 [110 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2 [101 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-14 [388 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.4-1+rpi1 [1308 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b1 [36.4 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.44.7-4 [165 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.44.7-4 [52.6 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.44.7-4 [44.9 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libpathplan4 armhf 2.42.2-4 [61.7 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libgvc6 armhf 2.42.2-4 [585 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libgvpr2 armhf 2.42.2-4 [185 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf liblab-gamut1 armhf 2.42.2-4 [220 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.1 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libxaw7 armhf 2:1.0.13-1+b2 [163 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf graphviz armhf 2.42.2-4 [500 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.6+repack-2 [40.0 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-17 [8389 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2+b11 [4464 B]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libcppunit-1.15-0 armhf 1.15.1-2 [133 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libcppunit-dev armhf 1.15.1-2 [194 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-1+rpi1 [232 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [93.0 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [49.8 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [36.9 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.6+repack-2 [2167 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp-dev armhf 1.7.4-3.1 [81.0 kB]
debconf: delaying package configuration, since apt-utils is not installed
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
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Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
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Setting up po-debconf (1.0.21) ...
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Setting up libcairo2:armhf (1.16.0-4) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libgd3:armhf (2.3.0-2) ...
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Setting up libpangocairo-1.0-0:armhf (1.44.7-4) ...
Setting up libgvc6 (2.42.2-4) ...
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Setting up dh-autoreconf (19) ...
Setting up debhelper (13) ...
Setting up sbuild-build-depends-gatb-core-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-8+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-12+rpi1 gcc-9_9.3.0-12+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-12+rpi1 libstdc++6_10.1.0-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.4 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8+rpi1 binutils-arm-linux-gnueabihf_2.34-8+rpi1 binutils-common_2.34-8+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.1-5 build-essential_12.8 bzip2_1.0.8-2 cmake_3.16.3-3+rpi1 cmake-data_3.16.3-3+rpi1 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-12+rpi1 d-shlibs_0.91 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 doxygen_1.8.17-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-5 file_1:5.38-5 findutils_4.7.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-12+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-1+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1 gcc-8-base_8.4.0-3+rpi1 gcc-9_9.3.0-12+rpi1 gcc-9-base_9.3.0-12+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 graphviz_2.42.2-4 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg6.0_2.1.4 libarchive-zip-perl_1.68-1 libarchive13_3.4.2-1 libasan5_9.3.0-12+rpi1 libassuan0_2.5.3-7 libatomic1_10.1.0-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-8+rpi1 libblkid1_2.35.1-5 libboost-dev_1.67.0.2+b11 libboost1.67-dev_1.67.0-17 libbrotli1_1.0.7-6.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-8+rpi1 libc-dev-bin_2.30-8+rpi1 libc6_2.30-8+rpi1 libc6-dev_2.30-8+rpi1 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10.1.0-1+rpi1 libcdt5_2.42.2-4 libcgraph6_2.42.2-4 libclang1-9_1:9.0.1-12+rpi1 libcom-err2_1.45.6-1 libcppunit-1.15-0_1.15.1-2 libcppunit-dev_1.15.1-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8+rpi1 libctf0_2.34-8+rpi1 libcurl4_7.68.0-1 libdatrie1_0.2.12-3+b1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.1-5 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.1-2 libfribidi0_1.0.8-2 libgcc-9-dev_9.3.0-12+rpi1 libgcc-s1_10.1.0-1+rpi1 libgcc1_1:10.1.0-1+rpi1 libgcrypt20_1.8.5-5 libgd3_2.3.0-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10.1.0-1+rpi1 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10.1.0-1+rpi1 libgpg-error0_1.37-1 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.17-7+rpi1 libgts-0.7-5_0.7.6+darcs121130-4 libgvc6_2.42.2-4 libgvpr2_2.42.2-4 libharfbuzz0b_2.6.4-1+rpi1 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed5_3.5.1+really3.5.1-2 libice6_2:1.0.9-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp-dev_1.7.4-3.1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-7+rpi1 libkeyutils1_1.6.1-2 libkrb5-3_1.17-7+rpi1 libkrb5support0_1.17-7+rpi1 libksba8_1.3.5-2 liblab-gamut1_2.42.2-4 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 libllvm9_1:9.0.1-12+rpi1 liblocale-gettext-perl_1.07-4 libltdl7_2.4.6-14 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.1-5 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.44.7-4 libpangocairo-1.0-0_1.44.7-4 libpangoft2-1.0-0_1.44.7-4 libpathplan4_2.42.2-4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libpixman-1-0_0.36.0-1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1 libreadline8_8.0-4 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.35.1-5 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-12+rpi1 libstdc++6_10.1.0-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.5-3+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-1+rpi1 libuchardet0_0.0.6-3 libudev1_245.5-3+rpi1 libunistring2_0.9.10-2 libuuid1_2.35.1-5 libuv1_1.35.0-2 libwebp6_0.6.1-2 libx11-6_2:1.6.9-2 libx11-data_2:1.6.9-2 libxapian30_1.4.15-1 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1+b2 libxcb-render0_1.14-2 libxcb-shm0_1.14-2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxml2_2.9.10+dfsg-5 libxmu6_2:1.1.2-2+b3 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1+b3 libz3-4_4.8.7-4 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.35.1-5 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-4 po-debconf_1.0.21 procps_2:3.3.16-5 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gatb-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0038+nmu1 util-linux_2.35.1-5 x11-common_1:7.7+20 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Apr 13 11:04:45 2020 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./gatb-core_1.4.2+dfsg-1.dsc
dpkg-source: info: extracting gatb-core in /<<BUILDDIR>>/gatb-core-1.4.2+dfsg
dpkg-source: info: unpacking gatb-core_1.4.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking gatb-core_1.4.2+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_hdf5.patch
dpkg-source: info: applying fix_hdf5_includes.patch
dpkg-source: info: applying dynamic_lib.patch
dpkg-source: info: applying fix_install_location.patch
dpkg-source: info: applying set_soversion.patch
dpkg-source: info: applying dynamic_linking_of_tools.patch
dpkg-source: info: applying multiarch.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying avoid_-msse
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-2c26a526-82f4-4d54-aa11-c00f981f0801
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package gatb-core
dpkg-buildpackage: info: source version 1.4.2+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --sourcedirectory=gatb-core
dh_auto_clean -O--sourcedirectory=gatb-core
dh_autoreconf_clean -O--sourcedirectory=gatb-core
dh_clean -O--sourcedirectory=gatb-core
debian/rules binary-arch
dh binary-arch --sourcedirectory=gatb-core
dh_update_autotools_config -a -O--sourcedirectory=gatb-core
dh_autoreconf -a -O--sourcedirectory=gatb-core
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg'
dh_auto_configure --
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_AUTOGEN_VERBOSE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ../gatb-core
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a)
-- CppUnit FOUND (/usr/include)
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of __uint128
-- Check size of __uint128 - failed
-- Check size of __uint128_t
-- Check size of __uint128_t - failed
-- Options: -std=c++11 -Wno-invalid-offsetof
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.6")
-- HDF5_LIBRARIES="/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so/usr/lib/arm-linux-gnueabihf/libpthread.so/usr/lib/arm-linux-gnueabihf/libsz.so/usr/lib/arm-linux-gnueabihf/libz.so/usr/lib/arm-linux-gnueabihf/libdl.so/usr/lib/arm-linux-gnueabihf/libm.so"
-- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation
CMake Warning (dev) at CMakeLists.txt:199 (set):
Cannot set "gatb-core-klist": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
-- ---------- GATB TESTS ----------
-- ---------- GATB TOOLS ----------
DYNAMIC BINARIES for dbgh5
DYNAMIC BINARIES for dbginfo
DYNAMIC BINARIES for leon
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.6") found components: C
CMake Warning (dev) at CMakeLists.txt:225 (set):
Cannot set "gatb-core-flags": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:226 (set):
Cannot set "gatb-core-includes": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:227 (set):
Cannot set "gatb-core-libraries": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:228 (set):
Cannot set "gatb-core-cmake": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.17") found components: doxygen dot
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_AUTOGEN_VERBOSE
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg'
debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core -B/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend
make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend
make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/thirdparty /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color=
Scanning dependencies of target thirdparty_copy
make[4]: Leaving directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E make_directory /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/json
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E make_directory /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E copy_if_different /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E copy_if_different /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/json/json.hpp /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/json/
make[4]: Leaving directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
[ 0%] Built target thirdparty_copy
Scanning dependencies of target gatbcore-dynamic
make[4]: Leaving directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build
Scanning dependencies of target gatbcore-static
make[4]: Leaving directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o
[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o
[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp
[ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
54 | fread (&value, sizeof(value), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp
[ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp
[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp
[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
54 | fread (&value, sizeof(value), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp
[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp
[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp
[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp
[ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp
[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp
[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp
[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp
[ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp
[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp
[ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp
[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp: In function 'long unsigned int gatb::core::debruijn::impl::logging(std::string)':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
32 | mem, memMaxProcess);
| ~~~
| |
| u_int64_t {aka long long unsigned int}
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
32 | mem, memMaxProcess);
| ~~~~~~~~~~~~~
| |
| u_int64_t {aka long long unsigned int}
[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp
[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp
[ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp: In function 'long unsigned int gatb::core::debruijn::impl::logging(std::string)':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
32 | mem, memMaxProcess);
| ~~~
| |
| u_int64_t {aka long long unsigned int}
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
32 | mem, memMaxProcess);
| ~~~~~~~~~~~~~
| |
| u_int64_t {aka long long unsigned int}
[ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp
[ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp
[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp
[ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp
[ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
[ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >}; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Distance = int; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
243 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
408 | std::__pop_heap(__first, __last, __last, __comp);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::Simplifications<GraphType, Node, Edge>::heuristic_most_covered_path_unitigs(gatb::core::debruijn::impl::Direction, Node&, Node&, int, std::set<Node>&, int&, std::vector<int>&, std::vector<int>&, double&, unsigned int, Node*, bool, long unsigned int&) [with GraphType = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >; Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >&}; _Tp = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; _Alloc = std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algobase.h: In function '_ForwardIterator std::__lower_bound(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Tp = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/9/bits/stl_algobase.h:966:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
966 | __lower_bound(_ForwardIterator __first, _ForwardIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h:966:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algo.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_indexed(Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algo.h:2257:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
2257 | = std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2258 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algobase.h: In member function 'int gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::AssocSet<Key, Value>::get(const Key&, Value&) const [with Key = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; Value = short unsigned int; Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'void gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::mark(Node&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_marked_branching(Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_marked(Edge&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'void gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::mark(Edge&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&}; _Tp = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >}; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Val = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _KeyOfValue = std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >&}; _Tp = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; _Alloc = std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algobase.h: In function '_ForwardIterator std::__lower_bound(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Tp = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/9/bits/stl_algobase.h:966:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
966 | __lower_bound(_ForwardIterator __first, _ForwardIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h:966:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Distance = int; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algo.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_indexed(Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algo.h:2257:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
2257 | = std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2258 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
243 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algobase.h: In member function 'int gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::AssocSet<Key, Value>::get(const Key&, Value&) const [with Key = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; Value = short unsigned int; Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'void gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::mark(Node&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_marked_branching(Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_marked(Edge&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'void gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::mark(Edge&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
408 | std::__pop_heap(__first, __last, __last, __comp);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 17%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::Simplifications<GraphType, Node, Edge>::heuristic_most_covered_path_unitigs(gatb::core::debruijn::impl::Direction, Node&, Node&, int, std::set<Node>&, int&, std::vector<int>&, std::vector<int>&, double&, unsigned int, Node*, bool, long unsigned int&) [with GraphType = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >; Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/unordered_map:46,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<1>; _Value = std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<1> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
1849 | _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1850 | _H1, _H2, _Hash, _RehashPolicy, _Traits>::
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<2>; _Value = std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<2> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<3>; _Value = std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<3> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<4>; _Value = std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<4> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
[ 17%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&}; _Tp = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate<Node, Edge, Graph>::validate_consensuses(std::set<gatb::core::debruijn::impl::Path_t<T> >&, gatb::core::debruijn::impl::Path_t<T>&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=]
714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| | long unsigned int
| std::set<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int}
| %u
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Val = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _KeyOfValue = std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp
In file included from /usr/include/c++/9/unordered_map:46,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<1>; _Value = std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<1> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
1849 | _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1850 | _H1, _H2, _Hash, _RehashPolicy, _Traits>::
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<2>; _Value = std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<2> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<3>; _Value = std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<3> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<4>; _Value = std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<4> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
[ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate<Node, Edge, Graph>::validate_consensuses(std::set<gatb::core::debruijn::impl::Path_t<T> >&, gatb::core::debruijn::impl::Path_t<T>&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=]
714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| | long unsigned int
| std::set<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int}
| %u
[ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp
[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp
[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp
[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp
/usr/include/c++/9/bits/hashtable.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::cacheNonSimpleNodeDelete(const Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
[ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const::Cmd::execute() [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function 'std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> > gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2937:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
2937 | std::set<BranchingNode_t<Node> > GraphTemplate<Node, Edge, GraphDataVariant>::neighbors (typename std::set<BranchingNode_t<Node> >::iterator first, typename std::set<BranchingNode_t<Node> >::iterator last) const
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2937:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
[ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp
[ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp
[ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp
/usr/include/c++/9/bits/hashtable.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::cacheNonSimpleNodeDelete(const Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
[ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const::Cmd::execute() [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function 'std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> > gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2937:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
2937 | std::set<BranchingNode_t<Node> > GraphTemplate<Node, Edge, GraphDataVariant>::neighbors (typename std::set<BranchingNode_t<Node> >::iterator first, typename std::set<BranchingNode_t<Node> >::iterator last) const
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2937:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp
[ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp
[ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp
[ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function 'void gatb::core::kmer::impl::Repartitor::printInfo()':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims);
| ~~^ ~~~~~~~~~~
| | |
| | u_int64_t {aka long long unsigned int}
| long int
| %lld
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); }
| ~~^ ~~
| | |
| long int u_int64_t {aka long long unsigned int}
| %lld
[ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >; _Distance = int; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Compare = __gnu_cxx::__ops::_Iter_comp_val<gatb::core::kmer::impl::Repartitor::compSpaceTriple>]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Repartitor::itriple&}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Repartitor::itriple}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::kmer::impl::Repartitor::computeDistrib(const gatb::core::kmer::impl::PartiInfo<5>&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp
[ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp
[ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp
[ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp
[ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp
[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp
[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp
[ 28%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp
[ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp
[ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp
[ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp
[ 30%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp
[ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp
[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.cpp
[ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp
[ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp
[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function 'void gatb::core::kmer::impl::Repartitor::printInfo()':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims);
| ~~^ ~~~~~~~~~~
| | |
| | u_int64_t {aka long long unsigned int}
| long int
| %lld
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); }
| ~~^ ~~
| | |
| long int u_int64_t {aka long long unsigned int}
| %lld
[ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >; _Distance = int; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Compare = __gnu_cxx::__ops::_Iter_comp_val<gatb::core::kmer::impl::Repartitor::compSpaceTriple>]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Repartitor::itriple&}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Repartitor::itriple}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::kmer::impl::Repartitor::computeDistrib(const gatb::core::kmer::impl::PartiInfo<5>&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp
[ 33%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp
[ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp
[ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp
[ 34%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp
[ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp
[ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 36%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 36%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp
[ 36%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp
[ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp
[ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void DnaEncoder::buildKmers()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp
[ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.hpp:26,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In constructor 'Order0Model::Order0Model(int)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp
[ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/api/Data.cpp
[ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp
[ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void DnaEncoder::buildKmers()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 42%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function 'virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
351 | _cpuinfo->getUsage(),
352 | mem, _memMax, memMaxProcess
| ~~~
| |
| u_int64_t {aka long long unsigned int}
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
351 | _cpuinfo->getUsage(),
352 | mem, _memMax, memMaxProcess
| ~~~~~~~
| |
| u_int64_t {aka long long unsigned int}
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format '%lu' expects argument of type 'long unsigned int', but argument 7 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
351 | _cpuinfo->getUsage(),
352 | mem, _memMax, memMaxProcess
| ~~~~~~~~~~~~~
| |
| u_int64_t {aka long long unsigned int}
[ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp
[ 43%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
438 | snprintf (buffer, sizeof(buffer), "%ld", value);
| ~~^ ~~~~~
| | |
| | int64_t {aka long long int}
| long int
| %lld
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 43%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp
[ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Tool.cpp
[ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp
[ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 45%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Leon::decodeAnchorDict()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Leon::startDecompression_setup()':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
[ 45%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp
[ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::tools::storage::impl::SuperKmerBinFiles::SuperKmerBinFiles(const string&, const string&, size_t)':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.hpp:26,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In constructor 'Order0Model::Order0Model(int)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 128]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 128]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 32]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp
[ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 32]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/api/Data.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 64]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 64]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 96]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~^
| |
| long unsigned int
| %12u
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
| | |
| | long unsigned int
| std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type {aka unsigned int}
| %u
843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
844 | _final_hash.size() );
| ~~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 96]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp
[ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Leon::decodeAnchorDict()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Leon::startDecompression_setup()':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~^
| |
| long unsigned int
| %12u
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
| | |
| | long unsigned int
| std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type {aka unsigned int}
| %u
843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
844 | _final_hash.size() );
| ~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp
[ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<128>&}; _Tp = gatb::core::debruijn::impl::markedSeq<128>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<128> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<128>, std::allocator<gatb::core::debruijn::impl::markedSeq<128> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<128>*, std::vector<gatb::core::debruijn::impl::markedSeq<128>, std::allocator<gatb::core::debruijn::impl::markedSeq<128> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~^
| |
| long unsigned int
| %12u
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
| | |
| | long unsigned int
| std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type {aka unsigned int}
| %u
843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
844 | _final_hash.size() );
| ~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function 'virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
351 | _cpuinfo->getUsage(),
352 | mem, _memMax, memMaxProcess
| ~~~
| |
| u_int64_t {aka long long unsigned int}
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
351 | _cpuinfo->getUsage(),
352 | mem, _memMax, memMaxProcess
| ~~~~~~~
| |
| u_int64_t {aka long long unsigned int}
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format '%lu' expects argument of type 'long unsigned int', but argument 7 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
351 | _cpuinfo->getUsage(),
352 | mem, _memMax, memMaxProcess
| ~~~~~~~~~~~~~
| |
| u_int64_t {aka long long unsigned int}
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<128>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<128>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<128>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<128>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int>}; _Tp = std::tuple<long long unsigned int, int>; _Alloc = std::allocator<std::tuple<long long unsigned int, int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int> > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'boomphf::mphf<elem_t, Hasher_t>::mphf(size_t, const Range&, int, double, bool, float) [with Range = std::vector<long long unsigned int>; elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:784:3: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
784 | }
| ^
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t)::RepartHashes::operator()(const gatb::core::bank::Sequence&) [with int SPAN = 128]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
438 | snprintf (buffer, sizeof(buffer), "%ld", value);
| ~~^ ~~~~~
| | |
| | int64_t {aka long long int}
| long int
| %lld
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int> > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In lambda function:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:278:32: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
278 | auto glue_from_extremity = [&](markedSeq<SPAN> current, seq_idx_t chain_index, seq_idx_t markedSequence_index, bool expect_circular=false)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
279 | {
| ~
280 | #ifndef NDEBUG
| ~~~~~~~~~~~~~~
281 | seq_idx_t first_index = markedSequence_index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
282 | #endif
| ~~~~~~
283 | vector<seq_idx_t> chain;
| ~~~~~~~~~~~~~~~~~~~~~~~~
284 | chain.push_back(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
285 |
|
286 | bool rmark = current.rmark;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
287 | usedSeq.insert(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
288 |
|
289 | while (rmark)
| ~~~~~~~~~~~~~
290 | {
| ~
291 | if (debug)
| ~~~~~~~~~~
292 | std::cout << "current ke " << current.ke << " index " << no_rev_index(chain_index) << " markings: " << current.lmark << current.rmark <<std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
293 |
|
294 | // this sequence has a rmark, so necessarily there is another sequence to glue it with. find it here.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
295 | set<seq_idx_t> candidateSuccessors = kmerIndex[current.ke];
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
296 |
|
297 | assert(candidateSuccessors.find(markedSequence_index) != candidateSuccessors.end()); // remove the current seq from our indexing data structure
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
298 | candidateSuccessors.erase(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
299 |
|
300 | assert(candidateSuccessors.size() == 1); // normally there is exactly one sequence to glue with
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
301 |
|
302 | seq_idx_t successor_index = *candidateSuccessors.begin(); // pop()
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
303 | assert(successor_index != markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | markedSeq<SPAN> successor = markedSequences[successor_index];
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
305 |
|
306 | chain_index = markedSequences[successor_index].index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 |
|
308 | if (successor.ks != current.ke || (!successor.lmark))
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
309 | {
| ~
310 | successor.revcomp();
| ~~~~~~~~~~~~~~~~~~~~
311 | chain_index = rev_index(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | }
| ~
313 |
|
314 | // some checks
| ~~~~~~~~~~~~~~
315 | {
| ~
316 | if (debug)
| ~~~~~~~~~~
317 | std::cout << "successor " << successor_index /*<<" successor ks ke " << successor.ks << " "<< successor.ke*/ /* need to convert Type to string to print, didn't bother writing that code yet */ << " markings: " << successor.lmark << successor.rmark << std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
318 | assert(successor.lmark);
| ~~~~~~~~~~~~~~~~~~~~~~~~
319 | assert(successor.ks == current.ke);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | // edge case where the seq to be glued starts and ends with itself.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
321 | // it should be a kmer (is tested below with an assert())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
322 | if (successor.ks == successor.ke)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
323 | {
| ~
324 | if (successor.lmark == false)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
325 | assert(successor.rmark == true);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | else
| ~~~~
327 | assert(successor.rmark == false);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | // it's the only possible cases I can think of
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
329 | // there is actually nothing to be done now, it's an extremity, so it will end.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | // on a side note, it's pointless to save this kmer in bcalm.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | }
| ~
332 | }
| ~
333 |
|
334 | current = successor;
| ~~~~~~~~~~~~~~~~~~~~
335 | markedSequence_index = successor_index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 |
|
337 | if (expect_circular)
| ~~~~~~~~~~~~~~~~~~~~
338 | {
| ~
339 | if (usedSeq.find(markedSequence_index) != usedSeq.end())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
340 | {
| ~
341 | assert(markedSequence_index == first_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
342 | if (debug)
| ~~~~~~~~~~
343 | std::cout << "breaking at circular unitig" << std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
344 | // here it would be tempting to remove the last element of the chain to remove the last kmer
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
345 | // but this strategy doesn't work as that element might be longer than a kmer
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
346 | // so the preferred strategy is to cut the last nucleotide of a circular unitig
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
347 | break;
| ~~~~~~
348 | }
| ~
349 | }
| ~
350 | else
| ~~~~
351 | {
| ~
352 | assert((usedSeq.find(markedSequence_index) == usedSeq.end()));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
353 | }
| ~
354 |
|
355 | usedSeq.insert(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | chain.push_back(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
357 | rmark = current.rmark;
| ~~~~~~~~~~~~~~~~~~~~~~
358 | }
| ~
359 |
|
360 | res.push_back(chain);
| ~~~~~~~~~~~~~~~~~~~~~
361 | res_is_circular.push_back(expect_circular);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
362 | nb_chained += chain.size();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
363 |
|
364 | };
| ~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:278:32: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
[ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In member function 'typename Functor::Result gatb::core::kmer::impl::Kmer<span>::ModelAbstract<ModelImpl, T>::execute(gatb::core::tools::misc::Data::Encoding_e, Functor) const [with Functor = gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed; ModelImpl = gatb::core::kmer::impl::Kmer<32>::ModelCanonical; T = gatb::core::kmer::impl::Kmer<32>::KmerCanonical; unsigned int span = 32]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:664:34: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
664 | typename Functor::Result execute (tools::misc::Data::Encoding_e encoding, Functor action) const
| ^~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<32>&}; _Tp = gatb::core::debruijn::impl::markedSeq<32>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<32> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<32>, std::allocator<gatb::core::debruijn::impl::markedSeq<32> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<32>*, std::vector<gatb::core::debruijn::impl::markedSeq<32>, std::allocator<gatb::core::debruijn::impl::markedSeq<32> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In member function 'void gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t)::RepartHashes::operator()(const gatb::core::bank::Sequence&) [with int SPAN = 32]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 128]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<32>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<32>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<32>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<32>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Tool.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int>}; _Tp = std::tuple<long long unsigned int, int>; _Alloc = std::allocator<std::tuple<long long unsigned int, int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int> > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1238:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
1238 | }
| ^
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'boomphf::mphf<elem_t, Hasher_t>::mphf(size_t, const Range&, int, double, bool, float) [with Range = std::vector<long long unsigned int>; elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:784:3: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
784 | }
| ^
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Distance = int; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int> > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In lambda function:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Distance = int; _Tp = gatb::core::debruijn::impl::kmerIndiceT<128>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 128]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In lambda function:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In lambda function:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:278:32: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
278 | auto glue_from_extremity = [&](markedSeq<SPAN> current, seq_idx_t chain_index, seq_idx_t markedSequence_index, bool expect_circular=false)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
279 | {
| ~
280 | #ifndef NDEBUG
| ~~~~~~~~~~~~~~
281 | seq_idx_t first_index = markedSequence_index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
282 | #endif
| ~~~~~~
283 | vector<seq_idx_t> chain;
| ~~~~~~~~~~~~~~~~~~~~~~~~
284 | chain.push_back(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
285 |
|
286 | bool rmark = current.rmark;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
287 | usedSeq.insert(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
288 |
|
289 | while (rmark)
| ~~~~~~~~~~~~~
290 | {
| ~
291 | if (debug)
| ~~~~~~~~~~
292 | std::cout << "current ke " << current.ke << " index " << no_rev_index(chain_index) << " markings: " << current.lmark << current.rmark <<std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
293 |
|
294 | // this sequence has a rmark, so necessarily there is another sequence to glue it with. find it here.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
295 | set<seq_idx_t> candidateSuccessors = kmerIndex[current.ke];
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
296 |
|
297 | assert(candidateSuccessors.find(markedSequence_index) != candidateSuccessors.end()); // remove the current seq from our indexing data structure
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
298 | candidateSuccessors.erase(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
299 |
|
300 | assert(candidateSuccessors.size() == 1); // normally there is exactly one sequence to glue with
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
301 |
|
302 | seq_idx_t successor_index = *candidateSuccessors.begin(); // pop()
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
303 | assert(successor_index != markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | markedSeq<SPAN> successor = markedSequences[successor_index];
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
305 |
|
306 | chain_index = markedSequences[successor_index].index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 |
|
308 | if (successor.ks != current.ke || (!successor.lmark))
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
309 | {
| ~
310 | successor.revcomp();
| ~~~~~~~~~~~~~~~~~~~~
311 | chain_index = rev_index(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | }
| ~
313 |
|
314 | // some checks
| ~~~~~~~~~~~~~~
315 | {
| ~
316 | if (debug)
| ~~~~~~~~~~
317 | std::cout << "successor " << successor_index /*<<" successor ks ke " << successor.ks << " "<< successor.ke*/ /* need to convert Type to string to print, didn't bother writing that code yet */ << " markings: " << successor.lmark << successor.rmark << std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
318 | assert(successor.lmark);
| ~~~~~~~~~~~~~~~~~~~~~~~~
319 | assert(successor.ks == current.ke);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | // edge case where the seq to be glued starts and ends with itself.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
321 | // it should be a kmer (is tested below with an assert())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
322 | if (successor.ks == successor.ke)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
323 | {
| ~
324 | if (successor.lmark == false)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
325 | assert(successor.rmark == true);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | else
| ~~~~
327 | assert(successor.rmark == false);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | // it's the only possible cases I can think of
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
329 | // there is actually nothing to be done now, it's an extremity, so it will end.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | // on a side note, it's pointless to save this kmer in bcalm.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | }
| ~
332 | }
| ~
333 |
|
334 | current = successor;
| ~~~~~~~~~~~~~~~~~~~~
335 | markedSequence_index = successor_index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 |
|
337 | if (expect_circular)
| ~~~~~~~~~~~~~~~~~~~~
338 | {
| ~
339 | if (usedSeq.find(markedSequence_index) != usedSeq.end())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
340 | {
| ~
341 | assert(markedSequence_index == first_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
342 | if (debug)
| ~~~~~~~~~~
343 | std::cout << "breaking at circular unitig" << std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
344 | // here it would be tempting to remove the last element of the chain to remove the last kmer
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
345 | // but this strategy doesn't work as that element might be longer than a kmer
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
346 | // so the preferred strategy is to cut the last nucleotide of a circular unitig
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
347 | break;
| ~~~~~~
348 | }
| ~
349 | }
| ~
350 | else
| ~~~~
351 | {
| ~
352 | assert((usedSeq.find(markedSequence_index) == usedSeq.end()));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
353 | }
| ~
354 |
|
355 | usedSeq.insert(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | chain.push_back(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
357 | rmark = current.rmark;
| ~~~~~~~~~~~~~~~~~~~~~~
358 | }
| ~
359 |
|
360 | res.push_back(chain);
| ~~~~~~~~~~~~~~~~~~~~~
361 | res_is_circular.push_back(expect_circular);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
362 | nb_chained += chain.size();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
363 |
|
364 | };
| ~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:278:32: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 32]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In member function 'typename Functor::Result gatb::core::kmer::impl::Kmer<span>::ModelAbstract<ModelImpl, T>::execute(gatb::core::tools::misc::Data::Encoding_e, Functor) const [with Functor = gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed; ModelImpl = gatb::core::kmer::impl::Kmer<64>::ModelCanonical; T = gatb::core::kmer::impl::Kmer<64>::KmerCanonical; unsigned int span = 64]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:664:34: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
664 | typename Functor::Result execute (tools::misc::Data::Encoding_e encoding, Functor action) const
| ^~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<64>&}; _Tp = gatb::core::debruijn::impl::markedSeq<64>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<64> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<64>, std::allocator<gatb::core::debruijn::impl::markedSeq<64> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<64>*, std::vector<gatb::core::debruijn::impl::markedSeq<64>, std::allocator<gatb::core::debruijn::impl::markedSeq<64> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1238:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
1238 | }
| ^
/usr/include/c++/9/bits/stl_algo.h: In function 'void gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In member function 'void gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t)::RepartHashes::operator()(const gatb::core::bank::Sequence&) [with int SPAN = 64]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _Distance = int; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Distance = int; _Tp = gatb::core::debruijn::impl::kmerIndiceT<32>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 32]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In lambda function:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 32]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 32]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<64>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<64>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<64>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<64>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int>}; _Tp = std::tuple<long long unsigned int, int>; _Alloc = std::allocator<std::tuple<long long unsigned int, int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int> > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In lambda function:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<128>*, std::vector<gatb::core::debruijn::impl::markedSeq<128>, std::allocator<gatb::core::debruijn::impl::markedSeq<128> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'boomphf::mphf<elem_t, Hasher_t>::mphf(size_t, const Range&, int, double, bool, float) [with Range = std::vector<long long unsigned int>; elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:784:3: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
784 | }
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::tools::storage::impl::SuperKmerBinFiles::SuperKmerBinFiles(const string&, const string&, size_t)':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::write_final_output(const string&, bool, gatb::core::bank::impl::BankFasta*, uint64_t&, bool)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int> > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_algo.h: In function 'void gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In lambda function:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:278:32: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
278 | auto glue_from_extremity = [&](markedSeq<SPAN> current, seq_idx_t chain_index, seq_idx_t markedSequence_index, bool expect_circular=false)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
279 | {
| ~
280 | #ifndef NDEBUG
| ~~~~~~~~~~~~~~
281 | seq_idx_t first_index = markedSequence_index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
282 | #endif
| ~~~~~~
283 | vector<seq_idx_t> chain;
| ~~~~~~~~~~~~~~~~~~~~~~~~
284 | chain.push_back(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
285 |
|
286 | bool rmark = current.rmark;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
287 | usedSeq.insert(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
288 |
|
289 | while (rmark)
| ~~~~~~~~~~~~~
290 | {
| ~
291 | if (debug)
| ~~~~~~~~~~
292 | std::cout << "current ke " << current.ke << " index " << no_rev_index(chain_index) << " markings: " << current.lmark << current.rmark <<std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
293 |
|
294 | // this sequence has a rmark, so necessarily there is another sequence to glue it with. find it here.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
295 | set<seq_idx_t> candidateSuccessors = kmerIndex[current.ke];
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
296 |
|
297 | assert(candidateSuccessors.find(markedSequence_index) != candidateSuccessors.end()); // remove the current seq from our indexing data structure
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
298 | candidateSuccessors.erase(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
299 |
|
300 | assert(candidateSuccessors.size() == 1); // normally there is exactly one sequence to glue with
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
301 |
|
302 | seq_idx_t successor_index = *candidateSuccessors.begin(); // pop()
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
303 | assert(successor_index != markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | markedSeq<SPAN> successor = markedSequences[successor_index];
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
305 |
|
306 | chain_index = markedSequences[successor_index].index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 |
|
308 | if (successor.ks != current.ke || (!successor.lmark))
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
309 | {
| ~
310 | successor.revcomp();
| ~~~~~~~~~~~~~~~~~~~~
311 | chain_index = rev_index(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | }
| ~
313 |
|
314 | // some checks
| ~~~~~~~~~~~~~~
315 | {
| ~
316 | if (debug)
| ~~~~~~~~~~
317 | std::cout << "successor " << successor_index /*<<" successor ks ke " << successor.ks << " "<< successor.ke*/ /* need to convert Type to string to print, didn't bother writing that code yet */ << " markings: " << successor.lmark << successor.rmark << std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
318 | assert(successor.lmark);
| ~~~~~~~~~~~~~~~~~~~~~~~~
319 | assert(successor.ks == current.ke);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | // edge case where the seq to be glued starts and ends with itself.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
321 | // it should be a kmer (is tested below with an assert())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
322 | if (successor.ks == successor.ke)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
323 | {
| ~
324 | if (successor.lmark == false)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
325 | assert(successor.rmark == true);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | else
| ~~~~
327 | assert(successor.rmark == false);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | // it's the only possible cases I can think of
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
329 | // there is actually nothing to be done now, it's an extremity, so it will end.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | // on a side note, it's pointless to save this kmer in bcalm.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | }
| ~
332 | }
| ~
333 |
|
334 | current = successor;
| ~~~~~~~~~~~~~~~~~~~~
335 | markedSequence_index = successor_index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 |
|
337 | if (expect_circular)
| ~~~~~~~~~~~~~~~~~~~~
338 | {
| ~
339 | if (usedSeq.find(markedSequence_index) != usedSeq.end())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
340 | {
| ~
341 | assert(markedSequence_index == first_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
342 | if (debug)
| ~~~~~~~~~~
343 | std::cout << "breaking at circular unitig" << std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
344 | // here it would be tempting to remove the last element of the chain to remove the last kmer
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
345 | // but this strategy doesn't work as that element might be longer than a kmer
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
346 | // so the preferred strategy is to cut the last nucleotide of a circular unitig
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
347 | break;
| ~~~~~~
348 | }
| ~
349 | }
| ~
350 | else
| ~~~~
351 | {
| ~
352 | assert((usedSeq.find(markedSequence_index) == usedSeq.end()));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
353 | }
| ~
354 |
|
355 | usedSeq.insert(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | chain.push_back(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
357 | rmark = current.rmark;
| ~~~~~~~~~~~~~~~~~~~~~~
358 | }
| ~
359 |
|
360 | res.push_back(chain);
| ~~~~~~~~~~~~~~~~~~~~~
361 | res_is_circular.push_back(expect_circular);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
362 | nb_chained += chain.size();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
363 |
|
364 | };
| ~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:278:32: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 64]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In lambda function:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<32>*, std::vector<gatb::core::debruijn::impl::markedSeq<32>, std::allocator<gatb::core::debruijn::impl::markedSeq<32> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::write_final_output(const string&, bool, gatb::core::bank::impl::BankFasta*, uint64_t&, bool)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1238:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
1238 | }
| ^
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In function 'void gatb::core::debruijn::impl::link_unitigs_pass(std::string, bool, int, int, bool, bool) [with unsigned int span = 32]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Distance = int; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Distance = int; _Tp = gatb::core::debruijn::impl::kmerIndiceT<64>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp
/usr/include/c++/9/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 64]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In lambda function:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 64]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 64]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
546 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~^
| |
| long unsigned int
| %12u
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
| | |
| | long unsigned int
| std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type {aka unsigned int}
| %u
843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
844 | _final_hash.size() );
| ~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp
/usr/include/c++/9/bits/stl_algo.h: In function 'void gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 128]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In lambda function:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<64>*, std::vector<gatb::core::debruijn::impl::markedSeq<64>, std::allocator<gatb::core::debruijn::impl::markedSeq<64> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::write_final_output(const string&, bool, gatb::core::bank::impl::BankFasta*, uint64_t&, bool)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In function 'void gatb::core::debruijn::impl::link_unitigs_pass(std::string, bool, int, int, bool, bool) [with unsigned int span = 64]':
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
480 | return execute<Functor_codeSeed> (encoding, Functor_codeSeed(seq, startIndex));
| ^
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:480:90: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 128]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 32]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 32]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp
[ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp
[ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<96>&}; _Tp = gatb::core::debruijn::impl::markedSeq<96>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<96> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<96>, std::allocator<gatb::core::debruijn::impl::markedSeq<96> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<96>*, std::vector<gatb::core::debruijn::impl::markedSeq<96>, std::allocator<gatb::core::debruijn::impl::markedSeq<96> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 64]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<96>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<96>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<96>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<96>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<96>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<96>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int>}; _Tp = std::tuple<long long unsigned int, int>; _Alloc = std::allocator<std::tuple<long long unsigned int, int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int> > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'boomphf::mphf<elem_t, Hasher_t>::mphf(size_t, const Range&, int, double, bool, float) [with Range = std::vector<long long unsigned int>; elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:784:3: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
784 | }
| ^
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t)::RepartHashes::operator()(const gatb::core::bank::Sequence&) [with int SPAN = 96]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 96]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 96]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 96]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int> > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 64]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<96>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<96> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<96>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<96>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<96> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<96>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<96>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In lambda function:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:278:32: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
278 | auto glue_from_extremity = [&](markedSeq<SPAN> current, seq_idx_t chain_index, seq_idx_t markedSequence_index, bool expect_circular=false)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
279 | {
| ~
280 | #ifndef NDEBUG
| ~~~~~~~~~~~~~~
281 | seq_idx_t first_index = markedSequence_index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
282 | #endif
| ~~~~~~
283 | vector<seq_idx_t> chain;
| ~~~~~~~~~~~~~~~~~~~~~~~~
284 | chain.push_back(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
285 |
|
286 | bool rmark = current.rmark;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
287 | usedSeq.insert(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
288 |
|
289 | while (rmark)
| ~~~~~~~~~~~~~
290 | {
| ~
291 | if (debug)
| ~~~~~~~~~~
292 | std::cout << "current ke " << current.ke << " index " << no_rev_index(chain_index) << " markings: " << current.lmark << current.rmark <<std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
293 |
|
294 | // this sequence has a rmark, so necessarily there is another sequence to glue it with. find it here.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
295 | set<seq_idx_t> candidateSuccessors = kmerIndex[current.ke];
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
296 |
|
297 | assert(candidateSuccessors.find(markedSequence_index) != candidateSuccessors.end()); // remove the current seq from our indexing data structure
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
298 | candidateSuccessors.erase(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
299 |
|
300 | assert(candidateSuccessors.size() == 1); // normally there is exactly one sequence to glue with
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
301 |
|
302 | seq_idx_t successor_index = *candidateSuccessors.begin(); // pop()
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
303 | assert(successor_index != markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | markedSeq<SPAN> successor = markedSequences[successor_index];
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
305 |
|
306 | chain_index = markedSequences[successor_index].index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 |
|
308 | if (successor.ks != current.ke || (!successor.lmark))
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
309 | {
| ~
310 | successor.revcomp();
| ~~~~~~~~~~~~~~~~~~~~
311 | chain_index = rev_index(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | }
| ~
313 |
|
314 | // some checks
| ~~~~~~~~~~~~~~
315 | {
| ~
316 | if (debug)
| ~~~~~~~~~~
317 | std::cout << "successor " << successor_index /*<<" successor ks ke " << successor.ks << " "<< successor.ke*/ /* need to convert Type to string to print, didn't bother writing that code yet */ << " markings: " << successor.lmark << successor.rmark << std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
318 | assert(successor.lmark);
| ~~~~~~~~~~~~~~~~~~~~~~~~
319 | assert(successor.ks == current.ke);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | // edge case where the seq to be glued starts and ends with itself.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
321 | // it should be a kmer (is tested below with an assert())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
322 | if (successor.ks == successor.ke)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
323 | {
| ~
324 | if (successor.lmark == false)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
325 | assert(successor.rmark == true);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | else
| ~~~~
327 | assert(successor.rmark == false);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | // it's the only possible cases I can think of
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
329 | // there is actually nothing to be done now, it's an extremity, so it will end.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | // on a side note, it's pointless to save this kmer in bcalm.
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | }
| ~
332 | }
| ~
333 |
|
334 | current = successor;
| ~~~~~~~~~~~~~~~~~~~~
335 | markedSequence_index = successor_index;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 |
|
337 | if (expect_circular)
| ~~~~~~~~~~~~~~~~~~~~
338 | {
| ~
339 | if (usedSeq.find(markedSequence_index) != usedSeq.end())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
340 | {
| ~
341 | assert(markedSequence_index == first_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
342 | if (debug)
| ~~~~~~~~~~
343 | std::cout << "breaking at circular unitig" << std::endl;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
344 | // here it would be tempting to remove the last element of the chain to remove the last kmer
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
345 | // but this strategy doesn't work as that element might be longer than a kmer
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
346 | // so the preferred strategy is to cut the last nucleotide of a circular unitig
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
347 | break;
| ~~~~~~
348 | }
| ~
349 | }
| ~
350 | else
| ~~~~
351 | {
| ~
352 | assert((usedSeq.find(markedSequence_index) == usedSeq.end()));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
353 | }
| ~
354 |
|
355 | usedSeq.insert(markedSequence_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | chain.push_back(chain_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
357 | rmark = current.rmark;
| ~~~~~~~~~~~~~~~~~~~~~~
358 | }
| ~
359 |
|
360 | res.push_back(chain);
| ~~~~~~~~~~~~~~~~~~~~~
361 | res_is_circular.push_back(expect_circular);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
362 | nb_chained += chain.size();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
363 |
|
364 | };
| ~
/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:278:32: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 96]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::prepare_uf(std::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 96]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.h