gatb-core →
1.4.1+git20190813.a73b6dd+dfsg-1 →
armhf → 2019-11-10 03:23:04
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+====================================================================================+
| gatb-core 1.4.1+git20190813.a73b6dd+dfsg-1 (armhf) Sun, 10 Nov 2019 02:47:09 +0000 |
+====================================================================================+
Package: gatb-core
Version: 1.4.1+git20190813.a73b6dd+dfsg-1
Source Version: 1.4.1+git20190813.a73b6dd+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-45c70d4c-dc6e-400e-8508-f9e462883a7f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.4 MB in 11s (2261 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/gatb-core.git
Please use:
git clone https://salsa.debian.org/med-team/gatb-core.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3044 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main gatb-core 1.4.1+git20190813.a73b6dd+dfsg-1 (dsc) [2457 B]
Get:2 http://172.17.0.1/private bullseye-staging/main gatb-core 1.4.1+git20190813.a73b6dd+dfsg-1 (tar) [2944 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main gatb-core 1.4.1+git20190813.a73b6dd+dfsg-1 (diff) [98.0 kB]
Fetched 3044 kB in 1s (3089 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/gatb-core-zVaphE/gatb-core-1.4.1+git20190813.a73b6dd+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gatb-core-zVaphE' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-0Vunwl/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-0Vunwl/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-0Vunwl/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (9364 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 36 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12235 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz
Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz
dpkg-deb: building package 'sbuild-build-depends-gatb-core-dummy' in '/<<BUILDDIR>>/resolver-0Vunwl/apt_archive/sbuild-build-depends-gatb-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-gatb-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ Sources [543 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ Packages [625 B]
Fetched 2501 B in 0s (11.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install gatb-core build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils
binutils-arm-linux-gnueabihf binutils-common bsdmainutils cmake cmake-data
cpp-9 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz
file fontconfig fontconfig-config fonts-dejavu-core g++-9 gcc-9 gcc-9-base
gettext gettext-base graphviz groff-base hdf5-helpers intltool-debian
libaec-dev libaec0 libarchive-zip-perl libarchive13 libasan5 libatomic1
libbinutils libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcairo2
libcc1-0 libcdt5 libcgraph6 libclang1-9 libcppunit-1.14-0 libcppunit-dev
libcroco3 libcurl4 libdatrie1 libdebhelper-perl libedit2 libelf1 libexpat1
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgcc-9-dev libgcc1 libgd3 libgfortran5 libglib2.0-0 libgomp1
libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b
libhdf5-103 libhdf5-cpp-103 libhdf5-dev libhogweed5 libice6 libicu63
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp-dev
libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblab-gamut1 libllvm9 libltdl7 libmagic-mgc libmagic1 libncurses6
libncursesw6 libnettle7 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16
libprocps7 libpsl5 librhash0 librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libstdc++-9-dev libstdc++6 libsub-override-perl libsz2 libthai-data libthai0
libtiff5 libtinfo5 libtinfo6 libtool libubsan1 libuchardet0 libuv1 libwebp6
libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4
man-db po-debconf procps sensible-utils ucf x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican
| wordlist whois vacation cmake-doc ninja-build gcc-9-locales dh-make
doxygen-latex doxygen-doc doxygen-gui gcc-9-doc libstdc++6-9-dbg libgcc1-dbg
libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg
libtsan0-dbg libubsan1-dbg libquadmath0-dbg gettext-doc libasprintf-dev
libgettextpo-dev gsfonts graphviz-doc groff lrzip libboost-doc
libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev
libboost-container1.67-dev libboost-context1.67-dev
libboost-coroutine1.67-dev libboost-date-time1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
libcppunit-doc libgd-tools krb5-doc krb5-user libhdf5-doc libstdc++-9-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc
apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx fonts-liberation ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales
libgpm2 publicsuffix libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz
groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libboost-dev libboost1.67-dev libbrotli1
libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-9 libcppunit-1.14-0
libcppunit-dev libcroco3 libcurl4 libdatrie1 libdebhelper-perl libedit2
libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3
libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103
libhdf5-cpp-103 libhdf5-dev libhogweed5 libice6 libicu63 libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp-dev libjsoncpp1
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libllvm9
libltdl7 libmagic-mgc libmagic1 libncurses6 libnettle7 libnghttp2-14
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4
libpipeline1 libpixman-1-0 libpng16-16 libprocps7 libpsl5 librhash0 librtmp1
libsigsegv2 libsm6 libssh2-1 libssl1.1 libsub-override-perl libsz2
libthai-data libthai0 libtiff5 libtinfo5 libtool libuchardet0 libuv1
libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1
libxt6 m4 man-db po-debconf procps sbuild-build-depends-gatb-core-dummy
sensible-utils ucf x11-common zlib1g-dev
The following packages will be upgraded:
binutils binutils-arm-linux-gnueabihf binutils-common cpp-9 g++-9 gcc-9
gcc-9-base libasan5 libatomic1 libbinutils libcc1-0 libgcc-9-dev libgcc1
libgomp1 libncursesw6 libstdc++-9-dev libstdc++6 libtinfo6 libubsan1
19 upgraded, 130 newly installed, 0 to remove and 17 not upgraded.
Need to get 104 MB of archives.
After this operation, 377 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0Vunwl/apt_archive ./ sbuild-build-depends-gatb-core-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 9.2.1-17+rpi1 [38.1 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf binutils-arm-linux-gnueabihf armhf 2.33.1-2+rpi1 [1723 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libbinutils armhf 2.33.1-2+rpi1 [307 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf binutils-common armhf 2.33.1-2+rpi1 [2087 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf binutils armhf 2.33.1-2+rpi1 [58.0 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf gcc-9-base armhf 9.2.1-17+rpi1 [194 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libgcc1 armhf 1:9.2.1-17+rpi1 [36.9 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 9.2.1-17+rpi1 [73.7 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 9.2.1-17+rpi1 [8160 B]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libasan5 armhf 9.2.1-17+rpi1 [348 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 9.2.1-17+rpi1 [112 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf g++-9 armhf 9.2.1-17+rpi1 [7627 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-9-dev armhf 9.2.1-17+rpi1 [1707 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libgcc-9-dev armhf 9.2.1-17+rpi1 [639 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf gcc-9 armhf 9.2.1-17+rpi1 [7284 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf cpp-9 armhf 9.2.1-17+rpi1 [6915 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 9.2.1-17+rpi1 [413 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-1 [1261 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.1+20191019-1 [320 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.1+20191019-1 [104 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libprocps7 armhf 2:3.3.15-2 [58.9 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.15-2 [235 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-6 [111 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.13.4-1 [1476 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [232 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.0-1+b1 [292 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-4 [266 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.39.2-1 [71.3 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.66.0-1+b1 [297 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.8-1 [132 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.33.1-2 [112 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.13.4-1 [2559 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf d-shlibs all 0.88 [17.4 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.1-1 [23.5 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.1-1 [14.4 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.1 [173 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.2-3 [1137 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.1 [997 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191025-1 [79.3 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libllvm9 armhf 1:9-1+rpi1 [13.1 MB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libclang1-9 armhf 1:9-1+rpi1 [5578 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libxapian30 armhf 1.4.12-1 [956 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf doxygen armhf 1.8.13-12 [3396 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libcdt5 armhf 2.42.2-3+b1 [58.6 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libcgraph6 armhf 2.42.2-3+b1 [78.5 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.0.10+git191003-1 [241 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.8-1 [298 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.8-1 [691 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libgd3 armhf 2.2.5-5.2 [115 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-4 [134 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-11 [387 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.7-1 [62.6 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b1 [36.4 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-7+b1 [168 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-11 [70.1 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.2-1 [1286 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-7+b1 [62.2 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-7+b1 [51.9 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libpathplan4 armhf 2.42.2-3+b1 [61.9 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libgvc6 armhf 2.42.2-3+b1 [586 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libgvpr2 armhf 2.42.2-3+b1 [185 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf liblab-gamut1 armhf 2.42.2-3+b1 [221 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.1 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libxaw7 armhf 2:1.0.13-1+b2 [163 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf graphviz armhf 2.42.2-3+b1 [502 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.4+repack-10 [35.2 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-13 [8386 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2+b1 [4464 B]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libcppunit-1.14-0 armhf 1.14.0-4 [128 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libcppunit-dev armhf 1.14.0-4 [189 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-17+rpi1 [231 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103 armhf 1.10.4+repack-10 [1259 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103 armhf 1.10.4+repack-10 [121 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.4+repack-10 [2221 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp-dev armhf 1.7.4-3 [78.6 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libbsd0:armhf.
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Unpacking libbinutils:armhf (2.33.1-2+rpi1) over (2.32.51.20190909-1+rpi1) ...
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Setting up gcc-9-base:armhf (9.2.1-17+rpi1) ...
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Unpacking libgcc1:armhf (1:9.2.1-17+rpi1) over (1:9.2.1-8+rpi1) ...
Setting up libgcc1:armhf (1:9.2.1-17+rpi1) ...
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Preparing to unpack .../0-libgomp1_9.2.1-17+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (9.2.1-17+rpi1) over (9.2.1-8+rpi1) ...
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Unpacking libatomic1:armhf (9.2.1-17+rpi1) over (9.2.1-8+rpi1) ...
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Unpacking g++-9 (9.2.1-17+rpi1) over (9.2.1-8+rpi1) ...
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Unpacking libstdc++-9-dev:armhf (9.2.1-17+rpi1) over (9.2.1-8+rpi1) ...
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Unpacking libgcc-9-dev:armhf (9.2.1-17+rpi1) over (9.2.1-8+rpi1) ...
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Setting up libstdc++6:armhf (9.2.1-17+rpi1) ...
Selecting previously unselected package libuchardet0:armhf.
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Unpacking file (1:5.37-6) ...
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Moving old data out of the way
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Unpacking cmake-data (3.13.4-1) ...
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up m4 (1.4.18-4) ...
Setting up libxcb-shm0:armhf (1.13.1-2) ...
Setting up binutils (2.33.1-2+rpi1) ...
Setting up libgcc-9-dev:armhf (9.2.1-17+rpi1) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libhdf5-103:armhf (1.10.4+repack-10) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up d-shlibs (0.88) ...
Setting up ucf (3.0038+nmu1) ...
Setting up autoconf (2.69-11) ...
Setting up libgvpr2:armhf (2.42.2-3+b1) ...
Setting up dwz (0.13-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up libcurl4:armhf (7.66.0-1+b1) ...
Setting up libx11-6:armhf (2:1.6.8-1) ...
Setting up libharfbuzz0b:armhf (2.6.2-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libllvm9:armhf (1:9-1+rpi1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gcc-9 (9.2.1-17+rpi1) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libstdc++-9-dev:armhf (9.2.1-17+rpi1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libclang1-9 (1:9-1+rpi1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up libhdf5-cpp-103:armhf (1.10.4+repack-10) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up man-db (2.9.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up doxygen (1.8.13-12) ...
Setting up libhdf5-dev (1.10.4+repack-10) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up g++-9 (9.2.1-17+rpi1) ...
Setting up libxt6:armhf (1:1.1.5-1+b3) ...
Setting up cmake (3.13.4-1) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up libboost1.67-dev:armhf (1.67.0-13) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libxmu6:armhf (2:1.1.2-2+b3) ...
Setting up po-debconf (1.0.21) ...
Setting up libpango-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libxaw7:armhf (2:1.0.13-1+b2) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libgd3:armhf (2.2.5-5.2) ...
Setting up libboost-dev:armhf (1.67.0.2+b1) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libgvc6 (2.42.2-3+b1) ...
Setting up graphviz (2.42.2-3+b1) ...
Setting up dh-strip-nondeterminism (1.6.1-1) ...
Setting up debhelper (12.7.1) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-gatb-core-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.1-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-17+rpi1 gcc-9_9.2.1-17+rpi1 libc6-dev_2.29-2+rpi1 libstdc++-9-dev_9.2.1-17+rpi1 libstdc++6_9.2.1-17+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.33.1-2+rpi1 binutils-arm-linux-gnueabihf_2.33.1-2+rpi1 binutils-common_2.33.1-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-17+rpi1 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.1-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 doxygen_1.8.13-12 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-17+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-7-base_7.4.0-14 gcc-9_9.2.1-17+rpi1 gcc-9-base_9.2.1-17+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 graphviz_2.42.2-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hdf5-helpers_1.10.4+repack-10 hostname_3.22 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1+b1 libasan5_9.2.1-17+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-17+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33.1-2+rpi1 libblkid1_2.34-0.1 libboost-dev_1.67.0.2+b1 libboost1.67-dev_1.67.0-13 libbrotli1_1.0.7-4 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2+rpi1 libc-dev-bin_2.29-2+rpi1 libc6_2.29-2+rpi1 libc6-dev_2.29-2+rpi1 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcap2-bin_1:2.25-2 libcc1-0_9.2.1-17+rpi1 libcdt5_2.42.2-3+b1 libcgraph6_2.42.2-3+b1 libclang1-9_1:9-1+rpi1 libcom-err2_1.45.4-1 libcppunit-1.14-0_1.14.0-4 libcppunit-dev_1.14.0-4 libcroco3_0.6.13-1 libcurl4_7.66.0-1+b1 libdatrie1_0.2.12-3+b1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.7.1 libdpkg-perl_1.19.7 libedit2_3.1-20191025-1 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.1-1 libfontconfig1_2.13.1-2 libfreetype6_2.10.1-2 libfribidi0_1.0.7-1 libgcc-9-dev_9.2.1-17+rpi1 libgcc1_1:9.2.1-17+rpi1 libgcrypt20_1.8.5-3 libgd3_2.2.5-5.2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-17+rpi1 libglib2.0-0_2.62.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-17+rpi1 libgpg-error0_1.36-7 libgraphite2-3_1.3.13-11 libgssapi-krb5-2_1.17-6+b1 libgts-0.7-5_0.7.6+darcs121130-4 libgvc6_2.42.2-3+b1 libgvpr2_2.42.2-3+b1 libharfbuzz0b_2.6.2-1 libhdf5-103_1.10.4+repack-10 libhdf5-cpp-103_1.10.4+repack-10 libhdf5-dev_1.10.4+repack-10 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libice6_2:1.0.9-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl19_0.20-2 libisl21_0.21-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblab-gamut1_2.42.2-3+b1 libldap-2.4-2_2.4.48+dfsg-1+b1 libldap-common_2.4.48+dfsg-1 libllvm9_1:9-1+rpi1 libltdl7_2.4.6-11 liblz4-1_1.9.1-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.39.2-1 libnpth0_1.6-1 libp11-kit0_0.23.17-2 libpam-cap_1:2.25-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.42.4-7+b1 libpangocairo-1.0-0_1.42.4-7+b1 libpangoft2-1.0-0_1.42.4-7+b1 libpathplan4_2.42.2-3+b1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.30_5.30.0-7 libpipeline1_1.5.1-2 libpixman-1-0_0.36.0-1 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libreadline7_7.0-5 libreadline8_8.0-3 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.1-2+rpi1 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1-1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-17+rpi1 libstdc++6_9.2.1-17+rpi1 libsub-override-perl_0.09-2 libsystemd0_242-7+rpi1 libsz2_1.0.4-1 libtasn1-6_4.14-3 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.0.10+git191003-1 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-17+rpi1 libuchardet0_0.0.6-3 libudev1_242-7+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.33.1-2 libwebp6_0.6.1-2 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxapian30_1.4.12-1 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxml2_2.9.4+dfsg1-7+b2 libxmu6_2:1.1.2-2+b3 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1+b3 libzstd1_1.4.3+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 netbase_5.6 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-7 perl-base_5.30.0-7 perl-modules-5.30_5.30.0-7 pinentry-curses_1.1.0-3 po-debconf_1.0.21 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gatb-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-3 tar_1.30+dfsg-6 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 x11-common_1:7.7+20 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Aug 20 11:06:42 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./gatb-core_1.4.1+git20190813.a73b6dd+dfsg-1.dsc
dpkg-source: info: extracting gatb-core in /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg
dpkg-source: info: unpacking gatb-core_1.4.1+git20190813.a73b6dd+dfsg.orig.tar.xz
dpkg-source: info: unpacking gatb-core_1.4.1+git20190813.a73b6dd+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_hdf5.patch
dpkg-source: info: applying fix_hdf5_includes.patch
dpkg-source: info: applying dynamic_lib.patch
dpkg-source: info: applying fix_install_location.patch
dpkg-source: info: applying set_soversion.patch
dpkg-source: info: applying dynamic_linking_of_tools.patch
dpkg-source: info: applying multiarch.patch
dpkg-source: info: applying spelling.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-45c70d4c-dc6e-400e-8508-f9e462883a7f
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package gatb-core
dpkg-buildpackage: info: source version 1.4.1+git20190813.a73b6dd+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=gatb-core
dh_auto_clean -O--sourcedirectory=gatb-core
dh_autoreconf_clean -O--sourcedirectory=gatb-core
dh_clean -O--sourcedirectory=gatb-core
debian/rules build-arch
dh build-arch --sourcedirectory=gatb-core
dh_update_autotools_config -a -O--sourcedirectory=gatb-core
dh_autoreconf -a -O--sourcedirectory=gatb-core
dh_auto_configure -a -O--sourcedirectory=gatb-core
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ../gatb-core
-- The C compiler identification is GNU 9.2.1
-- The CXX compiler identification is GNU 9.2.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a)
-- CppUnit FOUND (/usr/include)
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of __uint128
-- Check size of __uint128 - failed
-- Check size of __uint128_t
-- Check size of __uint128_t - failed
-- Options: -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.4")
-- HDF5_LIBRARIES="/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so/usr/lib/arm-linux-gnueabihf/libpthread.so/usr/lib/arm-linux-gnueabihf/libsz.so/usr/lib/arm-linux-gnueabihf/libz.so/usr/lib/arm-linux-gnueabihf/libdl.so/usr/lib/arm-linux-gnueabihf/libm.so"
-- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation
CMake Warning (dev) at CMakeLists.txt:237 (set):
Cannot set "gatb-core-klist": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
-- ---------- GATB TESTS ----------
-- ---------- GATB TOOLS ----------
DYNAMIC BINARIES for dbgh5
DYNAMIC BINARIES for dbginfo
DYNAMIC BINARIES for leon
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.4") found components: C
CMake Warning (dev) at CMakeLists.txt:263 (set):
Cannot set "gatb-core-flags": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:264 (set):
Cannot set "gatb-core-includes": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:265 (set):
Cannot set "gatb-core-libraries": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:266 (set):
Cannot set "gatb-core-cmake": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf
debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
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cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/thirdparty /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color=
Scanning dependencies of target thirdparty_copy
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cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E make_directory /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/json
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E make_directory /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E copy_if_different /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E copy_if_different /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty/json/json.hpp /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/json/
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[ 0%] Built target thirdparty_copy
Scanning dependencies of target gatbcore-dynamic
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Scanning dependencies of target gatbcore-static
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[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o
[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o
[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp
[ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
54 | fread (&value, sizeof(value), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp
[ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp
[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp
[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
54 | fread (&value, sizeof(value), 1, file);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp
[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp
[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp
[ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp
[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp
[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp
[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp: In function 'long unsigned int gatb::core::debruijn::impl::logging(std::string)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
32 | mem, memMaxProcess);
| ~~~
| |
| u_int64_t {aka long long unsigned int}
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
32 | mem, memMaxProcess);
| ~~~~~~~~~~~~~
| |
| u_int64_t {aka long long unsigned int}
[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp
[ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp
[ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp
[ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp
[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
[ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp
[ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp
[ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
[ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp
[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp
[ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algobase.h: In function '_ForwardIterator std::__lower_bound(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Tp = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/9/bits/stl_algobase.h:966:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
966 | __lower_bound(_ForwardIterator __first, _ForwardIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h:966:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >&}; _Tp = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; _Alloc = std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algobase.h: In member function 'int gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::AssocSet<Key, Value>::get(const Key&, Value&) const [with Key = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; Value = short unsigned int; Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_marked_branching(Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_marked(Edge&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algo.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_indexed(Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algo.h:2257:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
2257 | = std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2258 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algobase.h: In member function 'void gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::mark(Edge&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'void gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::mark(Node&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >}; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp: In function 'long unsigned int gatb::core::debruijn::impl::logging(std::string)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
32 | mem, memMaxProcess);
| ~~~
| |
| u_int64_t {aka long long unsigned int}
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
32 | mem, memMaxProcess);
| ~~~~~~~~~~~~~
| |
| u_int64_t {aka long long unsigned int}
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
[ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Distance = int; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
243 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
408 | std::__pop_heap(__first, __last, __last, __comp);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::Simplifications<GraphType, Node, Edge>::heuristic_most_covered_path_unitigs(gatb::core::debruijn::impl::Direction, Node&, Node&, int, std::set<Node>&, int&, std::vector<int>&, std::vector<int>&, double&, unsigned int, Node*, bool, long unsigned int&) [with GraphType = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >; Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate<Node, Edge, Graph>::validate_consensuses(std::set<gatb::core::debruijn::impl::Path_t<T> >&, gatb::core::debruijn::impl::Path_t<T>&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=]
714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| | long unsigned int
| std::set<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int}
| %u
[ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp
[ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp
[ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp
[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp
[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&}; _Tp = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp
[ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp
[ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Val = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _KeyOfValue = std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp
[ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
In file included from /usr/include/c++/9/unordered_map:46,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<1>; _Value = std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<1> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
1849 | _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1850 | _H1, _H2, _Hash, _RehashPolicy, _Traits>::
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<2>; _Value = std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<2> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<3>; _Value = std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<3> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<4>; _Value = std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<4> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp
[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp
[ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
[ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const::Cmd::execute() [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function 'void gatb::core::kmer::impl::Repartitor::printInfo()':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims);
| ~~^ ~~~~~~~~~~
| | |
| | u_int64_t {aka long long unsigned int}
| long int
| %lld
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); }
| ~~^ ~~
| | |
| long int u_int64_t {aka long long unsigned int}
| %lld
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function 'std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> > gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2935:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
2935 | std::set<BranchingNode_t<Node> > GraphTemplate<Node, Edge, GraphDataVariant>::neighbors (typename std::set<BranchingNode_t<Node> >::iterator first, typename std::set<BranchingNode_t<Node> >::iterator last) const
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2935:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Repartitor::itriple&}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Repartitor::itriple}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::kmer::impl::Repartitor::computeDistrib(const gatb::core::kmer::impl::PartiInfo<5>&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp
[ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp
In file included from /usr/include/c++/9/unordered_map:46,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/hashtable.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::cacheNonSimpleNodeDelete(const Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
[ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp
[ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp
[ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp
[ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp
[ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp
[ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algobase.h: In function '_ForwardIterator std::__lower_bound(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Tp = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; _Compare = __gnu_cxx::__ops::_Iter_less_val]':
/usr/include/c++/9/bits/stl_algobase.h:966:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
966 | __lower_bound(_ForwardIterator __first, _ForwardIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h:966:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >&}; _Tp = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; _Alloc = std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algobase.h: In member function 'int gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::AssocSet<Key, Value>::get(const Key&, Value&) const [with Key = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; Value = short unsigned int; Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_marked_branching(Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_marked(Edge&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algo.h: In member function 'bool gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::is_indexed(Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algo.h:2257:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
2257 | = std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2258 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_algobase.h: In member function 'void gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::mark(Edge&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algobase.h: In member function 'void gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::mark(Node&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/9/bits/stl_algobase.h:1013:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
1013 | return std::__lower_bound(__first, __last, __val,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1014 | __gnu_cxx::__ops::__iter_less_val());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >}; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&}; _Tp = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Distance = int; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
243 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
408 | std::__pop_heap(__first, __last, __last, __comp);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::Simplifications<GraphType, Node, Edge>::heuristic_most_covered_path_unitigs(gatb::core::debruijn::impl::Direction, Node&, Node&, int, std::set<Node>&, int&, std::vector<int>&, std::vector<int>&, double&, unsigned int, Node*, bool, long unsigned int&) [with GraphType = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >; Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate<Node, Edge, Graph>::validate_consensuses(std::set<gatb::core::debruijn::impl::Path_t<T> >&, gatb::core::debruijn::impl::Path_t<T>&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=]
714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| | long unsigned int
| std::set<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int}
| %u
[ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Val = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _KeyOfValue = std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/unordered_map:46,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<1>; _Value = std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<1> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
1849 | _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1850 | _H1, _H2, _Hash, _RehashPolicy, _Traits>::
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<2>; _Value = std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<2> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<3>; _Value = std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<3> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/9/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<4>; _Value = std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<4> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/9/bits/hashtable.h:1849:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
[ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.cpp
[ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp
[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp
[ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp: In constructor 'gatb::core::system::impl::ThreadLinux::ThreadLinux(void* (*)(void*), void*)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:51:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
51 | int ret = pthread_attr_init ( &tattr ) ;
| ^~~
[ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp
[ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp
[ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp
[ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp
[ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp
[ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const::Cmd::execute() [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function 'std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> > gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2935:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
2935 | std::set<BranchingNode_t<Node> > GraphTemplate<Node, Edge, GraphDataVariant>::neighbors (typename std::set<BranchingNode_t<Node> >::iterator first, typename std::set<BranchingNode_t<Node> >::iterator last) const
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2935:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
[ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
44 | class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
| ^~~~~~~~~~
[ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp
In file included from /usr/include/c++/9/unordered_map:46,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/hashtable.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::cacheNonSimpleNodeDelete(const Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
/usr/include/c++/9/bits/hashtable.h:768:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
768 | { return erase(const_iterator(__it)); }
| ^
[ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function 'kmer_type DnaDecoder::extendAnchor(kmer_type, int, bool)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
205 | return bin2ntTab[nt];
| ~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab'
194 | static const int bin2ntTab[5];
| ^~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
205 | return bin2ntTab[nt];
| ~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab'
194 | static const int bin2ntTab[5];
| ^~~~~~~~~
[ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void DnaEncoder::buildKmers()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
44 | class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
| ^~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.hpp:26,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In constructor 'Order0Model::Order0Model(int)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp
[ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/api/Data.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:71,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
44 | class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
| ^~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt64]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/LargeInt.hpp:42,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here
48 | class NativeInt64
| ^~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void AbstractHeaderCoder::addFieldColumn()':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp
[ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp
[ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp
[ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function 'virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
351 | _cpuinfo->getUsage(),
352 | mem, _memMax, memMaxProcess
| ~~~
| |
| u_int64_t {aka long long unsigned int}
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
351 | _cpuinfo->getUsage(),
352 | mem, _memMax, memMaxProcess
| ~~~~~~~
| |
| u_int64_t {aka long long unsigned int}
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format '%lu' expects argument of type 'long unsigned int', but argument 7 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
| ~~~^
| |
| long unsigned int
| %4llu
351 | _cpuinfo->getUsage(),
352 | mem, _memMax, memMaxProcess
| ~~~~~~~~~~~~~
| |
| u_int64_t {aka long long unsigned int}
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
438 | snprintf (buffer, sizeof(buffer), "%ld", value);
| ~~^ ~~~~~
| | |
| | int64_t {aka long long int}
| long int
| %lld
[ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp
[ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Tool.cpp
[ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp
[ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp
[ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp
[ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function 'void gatb::core::kmer::impl::Repartitor::printInfo()':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims);
| ~~^ ~~~~~~~~~~
| | |
| | u_int64_t {aka long long unsigned int}
| long int
| %lld
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); }
| ~~^ ~~
| | |
| long int u_int64_t {aka long long unsigned int}
| %lld
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
44 | class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
| ^~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Repartitor::itriple&}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Repartitor::itriple}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::kmer::impl::Repartitor::computeDistrib(const gatb::core::kmer::impl::PartiInfo<5>&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Leon::decodeAnchorDict()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Leon::startDecompression_setup()':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
[ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::tools::storage::impl::SuperKmerBinFiles::SuperKmerBinFiles(const string&, const string&, size_t)':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp
[ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp
[ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 128]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 42%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 128]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp
[ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp
[ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.cpp
[ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp
[ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 32]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 64]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp: In constructor 'gatb::core::system::impl::ThreadLinux::ThreadLinux(void* (*)(void*), void*)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:51:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
51 | int ret = pthread_attr_init ( &tattr ) ;
| ^~~
[ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp
[ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 32]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 64]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp
[ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
[ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
44 | class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
| ^~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 96]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 96]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:796:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
841 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~^
| |
| long unsigned int
| %12u
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
841 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
| | |
| | long unsigned int
| std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type {aka unsigned int}
| %u
842 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
843 | _final_hash.size() );
| ~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:796:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
841 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~^
| |
| long unsigned int
| %12u
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
841 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
| | |
| | long unsigned int
| std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type {aka unsigned int}
| %u
842 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
843 | _final_hash.size() );
| ~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function 'kmer_type DnaDecoder::extendAnchor(kmer_type, int, bool)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
205 | return bin2ntTab[nt];
| ~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab'
194 | static const int bin2ntTab[5];
| ^~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
205 | return bin2ntTab[nt];
| ~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab'
194 | static const int bin2ntTab[5];
| ^~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function 'void DnaDecoder::decodeAnchorRead()':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
205 | return bin2ntTab[nt];
| ~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab'
194 | static const int bin2ntTab[5];
| ^~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
205 | return bin2ntTab[nt];
| ~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab'
194 | static const int bin2ntTab[5];
| ^~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
205 | return bin2ntTab[nt];
| ~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab'
194 | static const int bin2ntTab[5];
| ^~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
205 | return bin2ntTab[nt];
| ~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:194:20: note: while referencing 'Leon::bin2ntTab'
194 | static const int bin2ntTab[5];
| ^~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<32>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<32>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<32>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
[ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void DnaEncoder::buildKmers()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
44 | class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
| ^~~~~~~~~~
[ 48%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void AbstractHeaderCoder::addFieldColumn()':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:796:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
841 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~^
| |
| long unsigned int
| %12u
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
841 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
| | |
| | long unsigned int
| std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type {aka unsigned int}
| %u
842 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
843 | _final_hash.size() );
| ~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In function 'typename Functor::Result gatb::core::kmer::impl::Kmer<span>::ModelAbstract<ModelImpl, T>::execute(gatb::core::tools::misc::Data::Encoding_e, Functor) const [with Functor = gatb::core::kmer::impl::Kmer<128>::ModelAbstract<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::KmerCanonical>::Functor_codeSeed; ModelImpl = gatb::core::kmer::impl::Kmer<128>::ModelCanonical; T = gatb::core::kmer::impl::Kmer<128>::KmerCanonical; unsigned int span = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:664:34: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<128>::ModelAbstract<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
664 | typename Functor::Result execute (tools::misc::Data::Encoding_e encoding, Functor action) const
| ^~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In function 'typename Functor::Result gatb::core::kmer::impl::Kmer<span>::ModelAbstract<ModelImpl, T>::execute(gatb::core::tools::misc::Data::Encoding_e, Functor) const [with Functor = gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed; ModelImpl = gatb::core::kmer::impl::Kmer<32>::ModelCanonical; T = gatb::core::kmer::impl::Kmer<32>::KmerCanonical; unsigned int span = 32]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:664:34: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
664 | typename Functor::Result execute (tools::misc::Data::Encoding_e encoding, Functor action) const
| ^~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
[ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<32>&}; _Tp = gatb::core::debruijn::impl::markedSeq<32>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<32> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<32>, std::allocator<gatb::core::debruijn::impl::markedSeq<32> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<32>*, std::vector<gatb::core::debruijn::impl::markedSeq<32>, std::allocator<gatb::core::debruijn::impl::markedSeq<32> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<128>&}; _Tp = gatb::core::debruijn::impl::markedSeq<128>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<128> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<128>, std::allocator<gatb::core::debruijn::impl::markedSeq<128> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<128>*, std::vector<gatb::core::debruijn::impl::markedSeq<128>, std::allocator<gatb::core::debruijn::impl::markedSeq<128> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<32>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<32>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<32>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<32>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool)::InsertTravellerKmer::operator()(const gatb::core::bank::Sequence&) [with unsigned int SPAN = 128]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<128>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<128>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'boomphf::mphf<elem_t, Hasher_t>::mphf(size_t, const Range&, int, double, bool, float) [with Range = std::vector<unsigned int>; elem_t = unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<unsigned int>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<128>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<128>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:783:3: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
783 | }
| ^
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::bank::Sequence; Functor = gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::InsertTravellerKmer]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'boomphf::mphf<elem_t, Hasher_t>::mphf(size_t, const Range&, int, double, bool, float) [with Range = std::vector<unsigned int>; elem_t = unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<unsigned int>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:71,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
44 | class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
| ^~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt64]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/LargeInt.hpp:42,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here
48 | class NativeInt64
| ^~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:783:3: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
783 | }
| ^
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector<std::vector<long long unsigned int> >&, std::vector<bool>&, const std::vector<gatb::core::debruijn::impl::markedSeq<SPAN> >&, int, bool) [with int SPAN = 32]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
402 | }
| ^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector<std::vector<long long unsigned int> >&, std::vector<bool>&, const std::vector<gatb::core::debruijn::impl::markedSeq<SPAN> >&, int, bool) [with int SPAN = 128]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
402 | }
| ^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In function 'typename Functor::Result gatb::core::kmer::impl::Kmer<span>::ModelAbstract<ModelImpl, T>::execute(gatb::core::tools::misc::Data::Encoding_e, Functor) const [with Functor = gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed; ModelImpl = gatb::core::kmer::impl::Kmer<64>::ModelCanonical; T = gatb::core::kmer::impl::Kmer<64>::KmerCanonical; unsigned int span = 64]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:664:34: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<64>::ModelAbstract<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
664 | typename Functor::Result execute (tools::misc::Data::Encoding_e encoding, Functor action) const
| ^~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _Distance = int; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Distance = int; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Distance = int; _Tp = gatb::core::debruijn::impl::kmerIndiceT<32>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 32]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Distance = int; _Tp = gatb::core::debruijn::impl::kmerIndiceT<128>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In lambda function:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 128]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<64>&}; _Tp = gatb::core::debruijn::impl::markedSeq<64>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<64> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<64>, std::allocator<gatb::core::debruijn::impl::markedSeq<64> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<64>*, std::vector<gatb::core::debruijn::impl::markedSeq<64>, std::allocator<gatb::core::debruijn::impl::markedSeq<64> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In lambda function:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<64>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<64>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<64>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<64>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::InsertIntoQueues<SPAN>::operator()(gatb::core::debruijn::impl::InsertIntoQueues<SPAN>::Count&) [with int SPAN = 32]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::InsertIntoQueues<SPAN>::operator()(gatb::core::debruijn::impl::InsertIntoQueues<SPAN>::Count&) [with int SPAN = 128]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'boomphf::mphf<elem_t, Hasher_t>::mphf(size_t, const Range&, int, double, bool, float) [with Range = std::vector<unsigned int>; elem_t = unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<unsigned int>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:783:3: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
783 | }
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::bank::Sequence; Functor = gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::InsertTravellerKmer]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector<std::vector<long long unsigned int> >&, std::vector<bool>&, const std::vector<gatb::core::debruijn::impl::markedSeq<SPAN> >&, int, bool) [with int SPAN = 64]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
402 | }
| ^
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:402:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In lambda function:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<32>*, std::vector<gatb::core::debruijn::impl::markedSeq<32>, std::allocator<gatb::core::debruijn::impl::markedSeq<32> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In lambda function:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<128>*, std::vector<gatb::core::debruijn::impl::markedSeq<128>, std::allocator<gatb::core::debruijn::impl::markedSeq<128> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::write_final_output(const string&, bool, gatb::core::bank::impl::BankFasta*, uint64_t&, bool)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::write_final_output(const string&, bool, gatb::core::bank::impl::BankFasta*, uint64_t&, bool)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Distance = int; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Distance = int; _Tp = gatb::core::debruijn::impl::kmerIndiceT<64>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 64]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In lambda function:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::InsertIntoQueues<SPAN>::operator()(gatb::core::debruijn::impl::InsertIntoQueues<SPAN>::Count&) [with int SPAN = 64]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Leon::decodeAnchorDict()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void Leon::startDecompression_setup()':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp
[ 48%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In lambda function:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<64>*, std::vector<gatb::core::debruijn::impl::markedSeq<64>, std::allocator<gatb::core::debruijn::impl::markedSeq<64> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::write_final_output(const string&, bool, gatb::core::bank::impl::BankFasta*, uint64_t&, bool)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:6:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand<span>::execute() [with unsigned int span = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
545 | printf("rank array : size %lu \n",_ranks.size());
| ~~^ ~~~~~~~~~~~~~
| | |
| | std::vector<long long unsigned int>::size_type {aka unsigned int}
| long unsigned int
| %u
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector<std::__cxx11::basic_string<char> > gatb::core::kmer::impl::TempCountFileMerger<span>::mergeFiles(std::vector<std::__cxx11::basic_string<char> >) [with unsigned int span = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:22: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand<span>::execute() [with unsigned int span = 128]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
239 | while(filenames.size() > _reduceTarget)
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
257 | for(int ii=0; ii< currentFiles.size(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<4>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
342 | for(int ii=0; ii< currentFiles.size(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp: In instantiation of 'gatb::core::kmer::impl::PartiInfo<xmer>& gatb::core::kmer::impl::PartiInfo<xmer>::add(const gatb::core::kmer::impl::PartiInfo<xmer>&) [with unsigned int xmer = 5]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:130:16: required from 'gatb::core::kmer::impl::PartiInfo<xmer>& gatb::core::kmer::impl::PartiInfo<xmer>::add_sync(const gatb::core::kmer::impl::PartiInfo<xmer>&) [with unsigned int xmer = 5]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1151:26: required from 'gatb::core::kmer::impl::FillPartitions<span, true>::~FillPartitions() [with unsigned int span = 128]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1242:5: required from 'void gatb::core::kmer::impl::SortingCountAlgorithm<span>::fillPartitions(size_t, gatb::core::tools::dp::Iterator<gatb::core::bank::Sequence>*, gatb::core::kmer::impl::PartiInfo<5>&) [with unsigned int span = 128; size_t = unsigned int]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:12:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:112:29: warning: comparison of integer expressions of different signedness: 'int' and 'u_int64_t' {aka 'long long unsigned int'} [-Wsign-compare]
112 | for (int np = 0; np < _nbpart; np++) {
| ~~~^~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:116:29: warning: comparison of integer expressions of different signedness: 'int' and 'u_int64_t' {aka 'long long unsigned int'} [-Wsign-compare]
116 | for (int ii = 0; ii < _num_mm_bins; ii++) {
| ~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp: In instantiation of 'gatb::core::kmer::impl::PartiInfo<xmer>::parti_record& gatb::core::kmer::impl::PartiInfo<xmer>::parti_record::operator+=(const gatb::core::kmer::impl::PartiInfo<xmer>::parti_record&) [with unsigned int xmer = 5]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:113:32: required from 'gatb::core::kmer::impl::PartiInfo<xmer>& gatb::core::kmer::impl::PartiInfo<xmer>::add(const gatb::core::kmer::impl::PartiInfo<xmer>&) [with unsigned int xmer = 5]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:130:16: required from 'gatb::core::kmer::impl::PartiInfo<xmer>& gatb::core::kmer::impl::PartiInfo<xmer>::add_sync(const gatb::core::kmer::impl::PartiInfo<xmer>&) [with unsigned int xmer = 5]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1151:26: required from 'gatb::core::kmer::impl::FillPartitions<span, true>::~FillPartitions() [with unsigned int span = 128]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1242:5: required from 'void gatb::core::kmer::impl::SortingCountAlgorithm<span>::fillPartitions(size_t, gatb::core::tools::dp::Iterator<gatb::core::bank::Sequence>*, gatb::core::kmer::impl::PartiInfo<5>&) [with unsigned int span = 128; size_t = unsigned int]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:12:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:66:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
66 | for(int i = 0 ; i < xmer * 256 ; i++) {
| ~~^~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'void gatb::core::kmer::impl::CountProcessorHistogram<span>::end() [with unsigned int span = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
117 | for(int ii=0; ii<= _histogram->getLength(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
120 | for(int jj=0; jj<= _histogram->getLength2(); jj++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
135 | for(int ii=1; ii<= _histogram->getLength(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:796:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
841 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~^
| |
| long unsigned int
| %12u
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
841 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
| | |
| | long unsigned int
| std::unordered_map<unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<const unsigned int, long long unsigned int> > >::size_type {aka unsigned int}
| %u
842 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
843 | _final_hash.size() );
| ~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt64]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/LargeInt.hpp:42,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/Integer.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here
48 | class NativeInt64
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.hpp:26,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In constructor 'Order0Model::Order0Model(int)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
[ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp
[ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/api/Data.cpp
[ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp
[ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp
[ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:6:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'void gatb::core::kmer::impl::PartitionsByHashCommand<span>::execute() [with unsigned int span = 32]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
563 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
587 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
599 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
708 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
715 | for(int ii=0; ii< _tmpCountFileNames.size(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of 'std::vector<std::__cxx11::basic_string<char> > gatb::core::kmer::impl::TempCountFileMerger<span>::mergeFiles(std::vector<std::__cxx11::basic_string<char> >) [with unsigned int span = 32]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:22: required from 'void gatb::core::kmer::impl::PartitionsByHashCommand<span>::execute() [with unsigned int span = 32]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
239 | while(filenames.size() > _reduceTarget)
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
257 | for(int ii=0; ii< currentFiles.size(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
265 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
271 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*, std::allocator<gatb::core::tools::dp::Iterator<gatb::core::tools::misc::Abundance<gatb::core::tools::math::LargeInt<1>, short unsigned int> >*> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
335 | for(int ii=0; ii< _tmpCountIterators.size(); ii++)
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
342 | for(int ii=0; ii< currentFiles.size(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp: In instantiation of 'gatb::core::kmer::impl::PartiInfo<xmer>& gatb::core::kmer::impl::PartiInfo<xmer>::add(const gatb::core::kmer::impl::PartiInfo<xmer>&) [with unsigned int xmer = 5]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:130:16: required from 'gatb::core::kmer::impl::PartiInfo<xmer>& gatb::core::kmer::impl::PartiInfo<xmer>::add_sync(const gatb::core::kmer::impl::PartiInfo<xmer>&) [with unsigned int xmer = 5]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1151:26: required from 'gatb::core::kmer::impl::FillPartitions<span, true>::~FillPartitions() [with unsigned int span = 32]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1242:5: required from 'void gatb::core::kmer::impl::SortingCountAlgorithm<span>::fillPartitions(size_t, gatb::core::tools::dp::Iterator<gatb::core::bank::Sequence>*, gatb::core::kmer::impl::PartiInfo<5>&) [with unsigned int span = 32; size_t = unsigned int]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:12:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:112:29: warning: comparison of integer expressions of different signedness: 'int' and 'u_int64_t' {aka 'long long unsigned int'} [-Wsign-compare]
112 | for (int np = 0; np < _nbpart; np++) {
| ~~~^~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:116:29: warning: comparison of integer expressions of different signedness: 'int' and 'u_int64_t' {aka 'long long unsigned int'} [-Wsign-compare]
116 | for (int ii = 0; ii < _num_mm_bins; ii++) {
| ~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp: In instantiation of 'gatb::core::kmer::impl::PartiInfo<xmer>::parti_record& gatb::core::kmer::impl::PartiInfo<xmer>::parti_record::operator+=(const gatb::core::kmer::impl::PartiInfo<xmer>::parti_record&) [with unsigned int xmer = 5]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:113:32: required from 'gatb::core::kmer::impl::PartiInfo<xmer>& gatb::core::kmer::impl::PartiInfo<xmer>::add(const gatb::core::kmer::impl::PartiInfo<xmer>&) [with unsigned int xmer = 5]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:130:16: required from 'gatb::core::kmer::impl::PartiInfo<xmer>& gatb::core::kmer::impl::PartiInfo<xmer>::add_sync(const gatb::core::kmer::impl::PartiInfo<xmer>&) [with unsigned int xmer = 5]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1151:26: required from 'gatb::core::kmer::impl::FillPartitions<span, true>::~FillPartitions() [with unsigned int span = 32]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:1242:5: required from 'void gatb::core::kmer::impl::SortingCountAlgorithm<span>::fillPartitions(size_t, gatb::core::tools::dp::Iterator<gatb::core::bank::Sequence>*, gatb::core::kmer::impl::PartiInfo<5>&) [with unsigned int span = 32; size_t = unsigned int]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:12:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:66:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
66 | for(int i = 0 ; i < xmer * 256 ; i++) {
| ~~^~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'void gatb::core::kmer::impl::CountProcessorHistogram<span>::end() [with unsigned int span = 32]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:104:10: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:117:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
117 | for(int ii=0; ii<= _histogram->getLength(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:120:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
120 | for(int jj=0; jj<= _histogram->getLength2(); jj++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
135 | for(int ii=1; ii<= _histogram->getLength(); ii++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here
1568 | struct Count : tools::misc::Abundance<Type,CountNumber>
| ^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt64]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess]
436 | memset (_data, 0, _blockSize*sizeof(Item));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/LargeInt.hpp:42,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/Integer.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here
48 | class NativeInt64
| ^~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In function 'typename Functor::Result gatb::core::kmer::impl::Kmer<span>::ModelAbstract<ModelImpl, T>::execute(gatb::core::tools::misc::Data::Encoding_e, Functor) const [with Functor = gatb::core::kmer::impl::Kmer<96>::ModelAbstract<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::KmerCanonical>::Functor_codeSeed; ModelImpl = gatb::core::kmer::impl::Kmer<96>::ModelCanonical; T = gatb::core::kmer::impl::Kmer<96>::KmerCanonical; unsigned int span = 96]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:664:34: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<96>::ModelAbstract<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
664 | typename Functor::Result execute (tools::misc::Data::Encoding_e encoding, Functor action) const
| ^~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
128 | __push_heap(_RandomAccessIterator __first,
| ^~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<96>&}; _Tp = gatb::core::debruijn::impl::markedSeq<96>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<96> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<96>, std::allocator<gatb::core::debruijn::impl::markedSeq<96> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<96>*, std::vector<gatb::core::debruijn::impl::markedSeq<96>, std::allocator<gatb::core::debruijn::impl::markedSeq<96> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, int, int, bool)::InsertTravellerKmer::operator()(const gatb::core::bank::Sequence&) [with unsigned int SPAN = 96]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<3>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<96>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<96>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<96>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<96>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<96>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<96>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<96>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<96> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'boomphf::mphf<elem_t, Hasher_t>::mphf(size_t, const Range&, int, double, bool, float) [with Range = std::vector<unsigned int>; elem_t = unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<unsigned int>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:783:3: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
783 | }
| ^
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20190813.a73b6dd+dfsg/gatb-core/src/gatb/tools/d