gatb-core →
1.4.1+git20181225.44d5a44+dfsg-3 →
armhf → 2019-07-08 00:02:38
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
Negative repeat count does nothing at /usr/share/perl5/Sbuild/Build.pm line 2740.
+==============================================================================+
Negative repeat count does nothing at /usr/share/perl5/Sbuild/Base.pm line 124.
| gatb-core 1.4.1+git20181225.44d5a44+dfsg-3 (armhf) Sun, 07 Jul 2019 21:04:38 +0000 |
+==============================================================================+
Package: gatb-core
Version: 1.4.1+git20181225.44d5a44+dfsg-3
Source Version: 1.4.1+git20181225.44d5a44+dfsg-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-75539ba8-fda4-4ab3-b2dc-332356000d64' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Hit:1 http://172.17.0.1/private bullseye-staging InRelease
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.3 MB]
Fetched 11.3 MB in 13s (885 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/gatb-core.git
Please use:
git clone https://salsa.debian.org/med-team/gatb-core.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3038 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main gatb-core 1.4.1+git20181225.44d5a44+dfsg-3 (dsc) [2452 B]
Get:2 http://172.17.0.1/private bullseye-staging/main gatb-core 1.4.1+git20181225.44d5a44+dfsg-3 (tar) [2943 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main gatb-core 1.4.1+git20181225.44d5a44+dfsg-3 (diff) [92.8 kB]
Fetched 3038 kB in 0s (6543 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/gatb-core-WUzlSz/gatb-core-1.4.1+git20181225.44d5a44+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gatb-core-WUzlSz' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-fchW9p/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-fchW9p/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-fchW9p/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2685 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-fchW9p/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12050 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz
Filtered Build-Depends: debhelper (>= 12~), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz
dpkg-deb: building package 'sbuild-build-depends-gatb-core-dummy' in '/<<BUILDDIR>>/resolver-fchW9p/apt_archive/sbuild-build-depends-gatb-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-gatb-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Sources [542 B]
Get:5 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Packages [623 B]
Fetched 2498 B in 1s (3187 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-fchW9p/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install gatb-core build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz
groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libboost-dev libboost1.67-dev libbsd0
libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcppunit-1.14-0 libcppunit-dev
libcroco3 libcurl4 libdatrie1 libedit2 libelf1 libexpat1
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2
libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103 libhdf5-cpp-103
libhdf5-dev libice6 libicu63 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblab-gamut1 libllvm6.0 libltdl7 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16
libprocps7 libpsl5 librhash0 librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsz2 libthai-data libthai0 libtiff5 libtinfo5 libtool libuchardet0 libuv1
libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxml2 libxmu6 libxpm4
libxrender1 libxt6 m4 man-db po-debconf procps sensible-utils ucf x11-common
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui
gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff
lrzip libboost-doc libboost1.67-doc libboost-atomic1.67-dev
libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev
libboost-coroutine1.67-dev libboost-date-time1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
libcppunit-doc libgd-tools krb5-doc krb5-user libhdf5-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx fonts-liberation ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales
libgpm2 publicsuffix libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz
groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libboost-dev libboost1.67-dev libbsd0
libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcppunit-1.14-0 libcppunit-dev
libcroco3 libcurl4 libdatrie1 libedit2 libelf1 libexpat1
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2
libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103 libhdf5-cpp-103
libhdf5-dev libice6 libicu63 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblab-gamut1 libllvm6.0 libltdl7 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16
libprocps7 libpsl5 librhash0 librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsz2 libthai-data libthai0 libtiff5 libtinfo5 libtool libuchardet0 libuv1
libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxml2 libxmu6 libxpm4
libxrender1 libxt6 m4 man-db po-debconf procps
sbuild-build-depends-gatb-core-dummy sensible-utils ucf x11-common
zlib1g-dev
0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded.
Need to get 72.2 MB of archives.
After this operation, 362 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-fchW9p/apt_archive ./ sbuild-build-depends-gatb-core-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.9.1-2 [104 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20181013-2 [309 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.5-2 [1230 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20181013-2 [78.6 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libprocps7 armhf 2:3.3.15-2 [58.9 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.15-2 [235 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.35-4 [242 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.35-4 [110 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.35-4 [65.3 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.13.4-1 [1476 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.1-6 [7973 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.3.3-4 [270 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-3 [62.2 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-3 [118 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1c-1 [1259 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-3 [317 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-3 [135 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.36.0-2 [73.6 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.64.0-4 [294 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.6-2 [77.1 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.8-1 [132 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.24.1-1 [96.7 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.13.4-1 [2559 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf d-shlibs all 0.84 [17.2 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.58.3-2 [1077 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.1.1 [1016 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20181209-1 [78.7 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libllvm6.0 armhf 1:6.0.1-10+rpi1 [12.5 MB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libclang1-6.0 armhf 1:6.0.1-10+rpi1 [5679 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libxapian30 armhf 1.4.11-1 [959 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf doxygen armhf 1.8.13-10 [3257 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.36-6 [273 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.9.1-3 [318 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libcdt5 armhf 2.40.1-6 [58.1 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libcgraph6 armhf 2.40.1-6 [77.2 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.0.10-4 [236 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libgd3 armhf 2.2.5-5.2 [115 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-4 [134 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-9 [387 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.5-3.1 [62.1 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-2 [170 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-2 [35.9 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-2 [50.9 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-6 [168 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-7 [69.6 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.3.1-1 [1144 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-6 [61.9 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-6 [51.6 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libpathplan4 armhf 2.40.1-6 [61.2 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libxdot4 armhf 2.40.1-6 [55.6 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libgvc6 armhf 2.40.1-6 [545 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libgvpr2 armhf 2.40.1-6 [188 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf liblab-gamut1 armhf 2.40.1-6 [220 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libxmu6 armhf 2:1.1.2-2 [52.0 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libxaw7 armhf 2:1.0.13-1 [164 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf graphviz armhf 2.40.1-6 [499 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.4+repack-10 [35.2 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.2-1 [21.3 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.2-1 [6640 B]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-13 [8386 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.1+b1 [4140 B]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libcppunit-1.14-0 armhf 1.14.0-3 [129 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libcppunit-dev armhf 1.14.0-3 [188 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 8.3.0-6+rpi1 [206 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103 armhf 1.10.4+repack-10 [1259 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103 armhf 1.10.4+repack-10 [121 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.4+repack-10 [2221 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp-dev armhf 1.7.4-3 [78.6 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Regenerating fonts cache... done.
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Processing triggers for libc-bin (2.28-10+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-16+rpi1 dpkg-dev_1.19.7 g++-8_8.3.0-6+rpi1 gcc-8_8.3.0-6+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16+rpi1 binutils-arm-linux-gnueabihf_2.31.1-16+rpi1 binutils-common_2.31.1-16+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.1 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-6+rpi1 d-shlibs_0.84 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1 doxygen_1.8.13-10 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-6+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b1 gcc-7-base_7.3.0-19 gcc-8_8.3.0-6+rpi1 gcc-8-base_8.3.0-6+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 graphviz_2.40.1-6 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hdf5-helpers_1.10.4+repack-10 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libasan5_8.3.0-6+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-6+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi1 libblkid1_2.33.1-0.1 libboost-dev_1.67.0.1+b1 libboost1.67-dev_1.67.0-13 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.1 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-6+rpi1 libcdt5_2.40.1-6 libcgraph6_2.40.1-6 libclang1-6.0_1:6.0.1-10+rpi1 libcom-err2_1.44.5-1 libcppunit-1.14-0_1.14.0-3 libcppunit-dev_1.14.0-3 libcroco3_0.6.12-3 libcurl4_7.64.0-4 libdatrie1_0.2.12-2 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.249 libdpkg-perl_1.19.7 libedit2_3.1-20181209-1 libelf1_0.176-1.1 libexpat1_2.2.6-2 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.2-1 libfontconfig1_2.13.1-2 libfreetype6_2.9.1-3 libfribidi0_1.0.5-3.1 libgcc-8-dev_8.3.0-6+rpi1 libgcc1_1:8.3.0-6+rpi1 libgcrypt20_1.8.4-5 libgd3_2.2.5-5.2 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgfortran5_8.3.0-6+rpi1 libglib2.0-0_2.58.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4 libgomp1_8.3.0-6+rpi1 libgpg-error0_1.35-1 libgraphite2-3_1.3.13-7 libgssapi-krb5-2_1.17-3 libgts-0.7-5_0.7.6+darcs121130-4 libgvc6_2.40.1-6 libgvpr2_2.40.1-6 libharfbuzz0b_2.3.1-1 libhdf5-103_1.10.4+repack-10 libhdf5-cpp-103_1.10.4+repack-10 libhdf5-dev_1.10.4+repack-10 libhogweed4_3.4.1-1 libice6_2:1.0.9-2 libicu63_63.1-6 libidn2-0_2.0.5-1 libisl19_0.20-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-3 libkeyutils1_1.6-6 libkrb5-3_1.17-3 libkrb5support0_1.17-3 libksba8_1.3.5-2 liblab-gamut1_2.40.1-6 libldap-2.4-2_2.4.47+dfsg-3+rpi1 libldap-common_2.4.47+dfsg-3+rpi1 libllvm6.0_1:6.0.1-10+rpi1 liblocale-gettext-perl_1.07-3+b3 libltdl7_2.4.6-9 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnghttp2-14_1.36.0-2 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.42.4-6 libpangocairo-1.0-0_1.42.4-6 libpangoft2-1.0-0_1.42.4-6 libpathplan4_2.40.1-6 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpixman-1-0_0.36.0-1 libpng16-16_1.6.36-6 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libreadline7_7.0-5 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3 libss2_1.44.5-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 libsystemd0_241-5+rpi1 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1+b1 libtext-iconv-perl_1.7-5+b10 libtext-wrapi18n-perl_0.06-7.1 libthai-data_0.1.28-2 libthai0_0.1.28-2 libtiff5_4.0.10-4 libtinfo5_6.1+20181013-2 libtinfo6_6.1+20181013-2 libtool_2.4.6-9 libubsan1_8.3.0-6+rpi1 libuchardet0_0.0.6-3 libudev1_241-5+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libuv1_1.24.1-1 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxapian30_1.4.11-1 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxdot4_2.40.1-6 libxext6_2:1.3.3-1+b2 libxml2_2.9.4+dfsg1-7+b1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libzstd1_1.3.8+dfsg-3+rpi1 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 po-debconf_1.0.21 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gatb-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 x11-common_1:7.7+19 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jun 19 10:58:34 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./gatb-core_1.4.1+git20181225.44d5a44+dfsg-3.dsc
dpkg-source: info: extracting gatb-core in /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg
dpkg-source: info: unpacking gatb-core_1.4.1+git20181225.44d5a44+dfsg.orig.tar.xz
dpkg-source: info: unpacking gatb-core_1.4.1+git20181225.44d5a44+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_hdf5.patch
dpkg-source: info: applying fix_hdf5_includes.patch
dpkg-source: info: applying dynamic_lib.patch
dpkg-source: info: applying fix_install_location.patch
dpkg-source: info: applying set_soversion.patch
dpkg-source: info: applying dynamic_linking_of_tools.patch
dpkg-source: info: applying multiarch.patch
dpkg-source: info: applying spelling.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-75539ba8-fda4-4ab3-b2dc-332356000d64
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package gatb-core
dpkg-buildpackage: info: source version 1.4.1+git20181225.44d5a44+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=gatb-core
dh_auto_clean -O--sourcedirectory=gatb-core
dh_autoreconf_clean -O--sourcedirectory=gatb-core
dh_clean -O--sourcedirectory=gatb-core
debian/rules build-arch
dh build-arch --sourcedirectory=gatb-core
dh_update_autotools_config -a -O--sourcedirectory=gatb-core
dh_autoreconf -a -O--sourcedirectory=gatb-core
dh_auto_configure -a -O--sourcedirectory=gatb-core
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ../gatb-core
-- The C compiler identification is GNU 8.3.0
-- The CXX compiler identification is GNU 8.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a)
-- CppUnit FOUND (/usr/include)
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of __uint128
-- Check size of __uint128 - failed
-- Check size of __uint128_t
-- Check size of __uint128_t - failed
-- Options: -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.4")
-- HDF5_LIBRARIES="/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so/usr/lib/arm-linux-gnueabihf/libpthread.so/usr/lib/arm-linux-gnueabihf/libsz.so/usr/lib/arm-linux-gnueabihf/libz.so/usr/lib/arm-linux-gnueabihf/libdl.so/usr/lib/arm-linux-gnueabihf/libm.so"
-- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation
CMake Warning (dev) at CMakeLists.txt:238 (set):
Cannot set "gatb-core-klist": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
-- ---------- GATB TESTS ----------
-- ---------- GATB TOOLS ----------
DYNAMIC BINARIES for dbgh5
DYNAMIC BINARIES for dbginfo
DYNAMIC BINARIES for leon
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.4") found components: C
CMake Warning (dev) at CMakeLists.txt:265 (set):
Cannot set "gatb-core-flags": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:266 (set):
Cannot set "gatb-core-includes": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:267 (set):
Cannot set "gatb-core-libraries": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:268 (set):
Cannot set "gatb-core-cmake": current scope has no parent.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf
debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core -B/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend
make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend
make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/thirdparty /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color=
Scanning dependencies of target thirdparty_copy
make[4]: Leaving directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E make_directory /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/json
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E make_directory /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E copy_if_different /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/thirdparty && /usr/bin/cmake -E copy_if_different /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty/json/json.hpp /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/json/
make[4]: Leaving directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
[ 0%] Built target thirdparty_copy
Scanning dependencies of target gatbcore-static
Scanning dependencies of target gatbcore-dynamic
make[4]: Leaving directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build
make[4]: Leaving directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o
[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o
[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp
[ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (&value, sizeof(value), 1, file);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp
[ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp
[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp
[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (&value, sizeof(value), 1, file);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp
[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp
[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp
[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp
[ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp
[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp
[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp
[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp
[ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp
[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp
[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp: In function 'long unsigned int gatb::core::debruijn::impl::logging(std::__cxx11::string)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mem, memMaxProcess);
~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp
[ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp
[ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp
[ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp
[ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp: In function 'long unsigned int gatb::core::debruijn::impl::logging(std::__cxx11::string)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mem, memMaxProcess);
~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp
In file included from /usr/include/c++/8/vector:63,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/usr/include/c++/8/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>; _ForwardIterator = std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>; _Tp = gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >]':
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
In file included from /usr/include/c++/8/deque:66,
from /usr/include/boost/detail/container_fwd.hpp:91,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/usr/include/c++/8/bits/deque.tcc: In function 'std::_Deque_iterator<_Tp, _Tp&, _Tp*> std::copy(std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, _Tp&, _Tp*>) [with _Tp = gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >]':
/usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
copy(_Deque_iterator<_Tp, const _Tp&, const _Tp*> __first,
^~~~
/usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc: In member function 'void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>; _Tp = gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
deque<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::copy(__first, __last, __pos - difference_type(__n));
^~~
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:63,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/usr/include/c++/8/bits/stl_uninitialized.h:421:72: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
return std::__uninitialized_copy_a(__first2, __last2, __mid, __alloc);
^
/usr/include/c++/8/bits/stl_uninitialized.h:421:72: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:421:72: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
In file included from /usr/include/c++/8/deque:66,
from /usr/include/boost/detail/container_fwd.hpp:91,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::copy(__mid, __last, __old_start);
^~~
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::copy(__first, __last, __pos);
^~~
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::copy(__first, __mid, __pos);
^~~
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp
/usr/include/c++/8/bits/deque.tcc: In member function 'std::deque<_Tp, _Alloc>& std::deque<_Tp, _Alloc>::operator=(const std::deque<_Tp, _Alloc>&) [with _Tp = gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
_M_erase_at_end(std::copy(__x.begin(), __x.end(),
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::copy(__x.begin(), __mid, this->_M_impl._M_start);
^~~
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::deque<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::const_iterator' {aka 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>'} changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:596:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __new_start,
^~~
/usr/include/c++/8/bits/deque.tcc:596:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:596:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:612:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last,
^~~
/usr/include/c++/8/bits/deque.tcc:612:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:612:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp
[ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
[ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp
In file included from /usr/include/c++/8/vector:63,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/usr/include/c++/8/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>; _ForwardIterator = std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>; _Tp = gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >]':
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
In file included from /usr/include/c++/8/deque:66,
from /usr/include/boost/detail/container_fwd.hpp:91,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/usr/include/c++/8/bits/deque.tcc: In function 'std::_Deque_iterator<_Tp, _Tp&, _Tp*> std::copy(std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, _Tp&, _Tp*>) [with _Tp = gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >]':
/usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
copy(_Deque_iterator<_Tp, const _Tp&, const _Tp*> __first,
^~~~
/usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
/usr/include/c++/8/bits/deque.tcc: In member function 'void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>; _Tp = gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
deque<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::copy(__first, __last, __pos - difference_type(__n));
^~~
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:63,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/usr/include/c++/8/bits/stl_uninitialized.h:421:72: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
return std::__uninitialized_copy_a(__first2, __last2, __mid, __alloc);
^
/usr/include/c++/8/bits/stl_uninitialized.h:421:72: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:421:72: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
In file included from /usr/include/c++/8/deque:66,
from /usr/include/boost/detail/container_fwd.hpp:91,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::copy(__mid, __last, __old_start);
^~~
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::copy(__first, __last, __pos);
^~~
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::copy(__first, __mid, __pos);
^~~
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc: In member function 'std::deque<_Tp, _Alloc>& std::deque<_Tp, _Alloc>::operator=(const std::deque<_Tp, _Alloc>&) [with _Tp = gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
_M_erase_at_end(std::copy(__x.begin(), __x.end(),
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::copy(__x.begin(), __mid, this->_M_impl._M_start);
^~~
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::deque<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::const_iterator' {aka 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>'} changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:596:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last, __new_start,
^~~
/usr/include/c++/8/bits/deque.tcc:596:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:596:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:612:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
std::__uninitialized_copy_a(__first, __last,
^~~
/usr/include/c++/8/bits/deque.tcc:612:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:612:3: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&, const gatb::core::debruijn::impl::NodeNt<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*>' changed in GCC 7.1
[ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp
[ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<96>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<96>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >}; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Distance = int; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::Simplifications<GraphType, Node, Edge>::heuristic_most_covered_path_unitigs(gatb::core::debruijn::impl::Direction, Node&, Node&, int, std::set<Node>&, int&, std::vector<int>&, std::vector<int>&, double&, unsigned int, Node*, bool, long unsigned int&) [with GraphType = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >; Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp
[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&}; _Tp = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >&}; _Tp = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; _Alloc = std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/8/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Val = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _KeyOfValue = std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp
In file included from /usr/include/c++/8/unordered_map:46,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<1>; _Value = std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<1> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/8/bits/hashtable.h:1871:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_H1, _H2, _Hash, _RehashPolicy, _Traits>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/hashtable.h:1871:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/8/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<2>; _Value = std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<2> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/8/bits/hashtable.h:1871:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/8/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<3>; _Value = std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<3> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/8/bits/hashtable.h:1871:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/8/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<4>; _Value = std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<4> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/8/bits/hashtable.h:1871:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate<Node, Edge, Graph>::validate_consensuses(std::set<gatb::core::debruijn::impl::Path_t<T> >&, gatb::core::debruijn::impl::Path_t<T>&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:23: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=]
if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >}; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Distance = int; _Tp = std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_heap.h:243:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_heap.h:408:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__pop_heap(__first, __last, __last, __comp);
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::Simplifications<GraphType, Node, Edge>::heuristic_most_covered_path_unitigs(gatb::core::debruijn::impl::Direction, Node&, Node&, int, std::set<Node>&, int&, std::vector<int>&, std::vector<int>&, double&, unsigned int, Node*, bool, long unsigned int&) [with GraphType = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >; Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/Sequence.hpp:183,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:36,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >*, std::vector<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<std::pair<int, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >&}; _Tp = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21:
/usr/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique(_II, _II) [with _InputIterator = std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Key = gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Val = gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _KeyOfValue = std::_Identity<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KoV, _Cmp, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/set:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21:
/usr/include/c++/8/bits/stl_set.h: In member function 'std::set<gatb::core::debruijn::impl::Path_t<T> > gatb::core::debruijn::impl::MonumentTraversalTemplate<Node, Edge, Graph>::all_consensuses_between(gatb::core::debruijn::impl::Direction, Node&, Node&, int, std::set<typename Node::Value>, gatb::core::debruijn::impl::Path_t<T>, bool&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/8/bits/stl_set.h:567:4: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
{ _M_t._M_insert_unique(__first, __last); }
^~~~
[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Val = gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _KeyOfValue = std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::_Identity<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /usr/include/c++/8/unordered_map:46,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<1>; _Value = std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<1> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/8/bits/hashtable.h:1871:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_H1, _H2, _Hash, _RehashPolicy, _Traits>::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/hashtable.h:1871:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/8/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<2>; _Value = std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<2> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/8/bits/hashtable.h:1871:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/8/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<3>; _Value = std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<3> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/8/bits/hashtable.h:1871:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
/usr/include/c++/8/bits/hashtable.h: In member function 'std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::iterator std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::erase(std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _H1, _H2, _Hash, _RehashPolicy, _Traits>::const_iterator) [with _Key = gatb::core::tools::math::LargeInt<4>; _Value = std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >; _ExtractKey = std::__detail::_Select1st; _Equal = std::equal_to<gatb::core::tools::math::LargeInt<4> >; _H1 = gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >; _H2 = std::__detail::_Mod_range_hashing; _Hash = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits<true, false, true>]':
/usr/include/c++/8/bits/hashtable.h:1871:5: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
[ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const::Cmd::execute() [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function 'std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> > gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2935:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
std::set<BranchingNode_t<Node> > GraphTemplate<Node, Edge, GraphDataVariant>::neighbors (typename std::set<BranchingNode_t<Node> >::iterator first, typename std::set<BranchingNode_t<Node> >::iterator last) const
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2935:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >&}; _Tp = gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >; _Alloc = std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/8/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminatorTemplate<Node, Edge, Graph>::BranchingTerminatorTemplate(const Graph&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >*, std::vector<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > >, std::allocator<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp
[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp
[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp
In file included from /usr/include/c++/8/unordered_map:46,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/hashtable.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::cacheNonSimpleNodeDelete(const Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate<Node, Edge, Graph>::validate_consensuses(std::set<gatb::core::debruijn::impl::Path_t<T> >&, gatb::core::debruijn::impl::Path_t<T>&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:23: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=]
if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const::Cmd::execute() [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >*, std::vector<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function 'std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> > gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::neighbors(typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator, typename std::set<gatb::core::debruijn::impl::BranchingNode_t<Node> >::iterator) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2935:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
std::set<BranchingNode_t<Node> > GraphTemplate<Node, Edge, GraphDataVariant>::neighbors (typename std::set<BranchingNode_t<Node> >::iterator first, typename std::set<BranchingNode_t<Node> >::iterator last) const
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2935:34: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21:
/usr/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique(_II, _II) [with _InputIterator = std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Key = gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _Val = gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; _KeyOfValue = std::_Identity<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Compare = std::less<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >; _Alloc = std::allocator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >]':
/usr/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KoV, _Cmp, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/set:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21:
/usr/include/c++/8/bits/stl_set.h: In member function 'std::set<gatb::core::debruijn::impl::Path_t<T> > gatb::core::debruijn::impl::MonumentTraversalTemplate<Node, Edge, Graph>::all_consensuses_between(gatb::core::debruijn::impl::Direction, Node&, Node&, int, std::set<typename Node::Value>, gatb::core::debruijn::impl::Path_t<T>, bool&) [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]':
/usr/include/c++/8/bits/stl_set.h:567:4: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >' changed in GCC 7.1
{ _M_t._M_insert_unique(__first, __last); }
^~~~
[ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp
[ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp
In file included from /usr/include/c++/8/unordered_map:46,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/hashtable.h: In member function 'void gatb::core::debruijn::impl::GraphTemplate<Node, Edge, GraphDataVariant>::cacheNonSimpleNodeDelete(const Node&) const [with Node = gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t<gatb::core::debruijn::impl::Node_t<gatb::core::tools::math::IntegerTemplate<boost::mpl::vector4<mpl_::int_<32>, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; GraphDataVariant = boost::variant<boost::detail::variant::over_sequence<boost::mpl::l_item<mpl_::long_<4>, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item<mpl_::long_<3>, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item<mpl_::long_<2>, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item<mpl_::long_<1>, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > >]':
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<1>, std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<1> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<1> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<1>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<2>, std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<2> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<2> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<2>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<3>, std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<3> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<3> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<3>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
/usr/include/c++/8/bits/hashtable.h:767:42: note: parameter passing for argument of type 'std::_Hashtable<gatb::core::tools::math::LargeInt<4>, std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > > >, std::__detail::_Select1st, std::equal_to<gatb::core::tools::math::LargeInt<4> >, gatb::core::debruijn::impl::NodeHasher<gatb::core::tools::math::LargeInt<4> >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, false, true> >::const_iterator' {aka 'std::__detail::_Node_const_iterator<std::pair<const gatb::core::tools::math::LargeInt<4>, std::pair<char, std::__cxx11::basic_string<char> > >, false, true>'} changed in GCC 7.1
{ return erase(const_iterator(__it)); }
^
[ 21%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp
[ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp
[ 21%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp
[ 21%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp
[ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp
[ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp
[ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp
[ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp
[ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp
[ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp
[ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp
[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function 'void gatb::core::kmer::impl::Repartitor::printInfo()':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:12: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
printf("Repartitor : nbMinimizers=%ld\n", nbMinimizers);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:309:61: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
for (u_int64_t ii=0; ii<nbMinimizers; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); }
^~~~~~~~~~~~~~~~~~~~~~~ ~~
[ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
[ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Repartitor::itriple&}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Repartitor::itriple}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void gatb::core::kmer::impl::Repartitor::computeDistrib(const gatb::core::kmer::impl::PartiInfo<5>&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp
[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp
[ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp
[ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp
[ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp
[ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp
[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp
[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.cpp
[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp
[ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp
[ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp: In constructor 'gatb::core::system::impl::ThreadLinux::ThreadLinux(void* (*)(void*), void*)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:51:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
int ret = pthread_attr_init ( &tattr ) ;
^~~
[ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function 'void gatb::core::kmer::impl::Repartitor::printInfo()':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:12: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
printf("Repartitor : nbMinimizers=%ld\n", nbMinimizers);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:309:61: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
for (u_int64_t ii=0; ii<nbMinimizers; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); }
^~~~~~~~~~~~~~~~~~~~~~~ ~~
[ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp
[ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Distance = int; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, long long unsigned int>}; _Tp = std::pair<long long unsigned int, long long unsigned int>; _Alloc = std::allocator<std::pair<long long unsigned int, long long unsigned int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::pair<long long unsigned int, long long unsigned int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::kmer::impl::Repartitor::compBin>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Repartitor::itriple&}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Repartitor::itriple}; _Tp = gatb::core::kmer::impl::Repartitor::itriple; _Alloc = std::allocator<gatb::core::kmer::impl::Repartitor::itriple>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Repartitor::itriple>::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void gatb::core::kmer::impl::Repartitor::computeDistrib(const gatb::core::kmer::impl::PartiInfo<5>&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, long long unsigned int>*, std::vector<std::pair<long long unsigned int, long long unsigned int> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:20:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Repartitor::itriple*, std::vector<gatb::core::kmer::impl::Repartitor::itriple> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp
[ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp
[ 34%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp
[ 34%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
^~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
^~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp
[ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.cpp
[ 36%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp
[ 36%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp: In constructor 'gatb::core::system::impl::ThreadLinux::ThreadLinux(void* (*)(void*), void*)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:51:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
int ret = pthread_attr_init ( &tattr ) ;
^~~
[ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp
[ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp
[ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function 'kmer_type DnaDecoder::extendAnchor(kmer_type, int, bool)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
return bin2ntTab[nt];
~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
return bin2ntTab[nt];
~~~~~~~~~~~~^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void DnaEncoder::buildKmers()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
^~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
^~~~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function 'kmer_type DnaDecoder::extendAnchor(kmer_type, int, bool)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
return bin2ntTab[nt];
~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
return bin2ntTab[nt];
~~~~~~~~~~~~^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:27,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function 'void DnaDecoder::decodeAnchorRead()':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
return bin2ntTab[nt];
~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
return bin2ntTab[nt];
~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
return bin2ntTab[nt];
~~~~~~~~~~~~^
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript 255 is above array bounds of 'const int [5]' [-Warray-bounds]
return bin2ntTab[nt];
~~~~~~~~~~~~^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:78,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:71,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
^~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt64]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/LargeInt.hpp:42,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here
class NativeInt64
^~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void DnaEncoder::buildKmers()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:71,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
^~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:48,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt64; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt64]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt64'; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/LargeInt.hpp:42,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/NativeInt64.hpp:48:7: note: 'class gatb::core::tools::math::NativeInt64' declared here
class NativeInt64
^~~~~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp
[ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp
[ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp
[ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp
[ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp
[ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp
[ 42%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/api/Data.cpp
[ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/api/Data.cpp
[ 43%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp
[ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp
[ 43%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp
[ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp
[ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function 'virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:352:9:
mem, _memMax, memMaxProcess
~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 7 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
[ 45%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void Leon::decodeAnchorDict()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void Leon::startDecompression_setup()':
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
[ 45%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function 'virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:352:9:
mem, _memMax, memMaxProcess
~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 7 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=]
[ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/IMemory.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/gatb_core.hpp:31,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void Leon::decodeAnchorDict()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp
/usr/include/c++/8/bits/stl_vector.h: In member function 'void Leon::startDecompression_setup()':
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:39: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
snprintf (buffer, sizeof(buffer), "%ld", value);
^~~~~ ~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:39: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
snprintf (buffer, sizeof(buffer), "%ld", value);
^~~~~ ~~~~~
[ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o
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[ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp
[ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp
[ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp
[ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o
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[ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/misc/impl/Tool.cpp
[ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o
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[ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp
[ 51%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp
[ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
^~~~~~~~~~
[ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::tools::math::NativeInt8; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::tools::math::NativeInt8]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class gatb::core::tools::math::NativeInt8'; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:45,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/math/NativeInt8.hpp:44:7: note: 'class gatb::core::tools::math::NativeInt8' declared here
class NativeInt8 : private misc::ArrayData<u_int8_t, 1>
^~~~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp
[ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In constructor 'gatb::core::tools::storage::impl::SuperKmerBinFiles::SuperKmerBinFiles(const string&, const string&, size_t)':
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with unsigned int span = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:13:17: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
while(uid<4 && skid < superKmerLen)
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(skid >= superKmerLen) break;
~~~~~^~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In constructor 'gatb::core::tools::storage::impl::SuperKmerBinFiles::SuperKmerBinFiles(const string&, const string&, size_t)':
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with unsigned int span = 32]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:13:17: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
while(uid<4 && skid < superKmerLen)
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(skid >= superKmerLen) break;
~~~~~^~~~~~~~~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/usr/include/c++/8/bits/stl_vector.h: In function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 128]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 128]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/usr/include/c++/8/bits/stl_vector.h: In function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 32]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 32]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with unsigned int span = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:13:17: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
while(uid<4 && skid < superKmerLen)
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(skid >= superKmerLen) break;
~~~~~^~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with unsigned int span = 32]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:13:17: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
while(uid<4 && skid < superKmerLen)
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(skid >= superKmerLen) break;
~~~~~^~~~~~~~~~~~~~~
[ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp
[ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5:
/usr/include/c++/8/bits/stl_vector.h: In function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 128]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 128]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<128>::KmerMinimizer<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with unsigned int span = 64]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:13:17: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
while(uid<4 && skid < superKmerLen)
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(skid >= superKmerLen) break;
~~~~~^~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5:
/usr/include/c++/8/bits/stl_vector.h: In function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 32]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 32]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<>::KmerMinimizer<gatb::core::kmer::impl::Kmer<>::ModelCanonical, gatb::core::kmer::impl::Kmer<>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with unsigned int span = 64]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:13:17: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
while(uid<4 && skid < superKmerLen)
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(skid >= superKmerLen) break;
~~~~~^~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/usr/include/c++/8/bits/stl_vector.h: In function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 64]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 64]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp
[ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5:
/usr/include/c++/8/bits/stl_vector.h: In function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 64]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 64]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<64>::KmerMinimizer<gatb::core::kmer::impl::Kmer<64>::ModelCanonical, gatb::core::kmer::impl::Kmer<64>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 55%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with unsigned int span = 96]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:13:17: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
while(uid<4 && skid < superKmerLen)
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(skid >= superKmerLen) break;
~~~~~^~~~~~~~~~~~~~~
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:3:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:31:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable]
uint debug_index = 0;
^~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:765:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, bool) [with unsigned int SPAN = 128; std::__cxx11::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector<std::vector<unsigned int> >&, const std::vector<gatb::core::debruijn::impl::markedSeq<SPAN> >&, int, bool) [with int SPAN = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, bool) [with unsigned int SPAN = 128; std::__cxx11::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable]
uint32_t first_index = markedSequence_index;
^~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with unsigned int span = 96]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:13:17: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
while(uid<4 && skid < superKmerLen)
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(skid >= superKmerLen) break;
~~~~~^~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/usr/include/c++/8/bits/stl_vector.h: In function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 96]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 96]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:3:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 32]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:31:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable]
uint debug_index = 0;
^~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:765:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, bool) [with unsigned int SPAN = 32; std::__cxx11::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector<std::vector<unsigned int> >&, const std::vector<gatb::core::debruijn::impl::markedSeq<SPAN> >&, int, bool) [with int SPAN = 32]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, bool) [with unsigned int SPAN = 32; std::__cxx11::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable]
uint32_t first_index = markedSequence_index;
^~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>&}; _Tp = gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Bag.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5:
/usr/include/c++/8/bits/stl_vector.h: In function 'void gatb::core::kmer::impl::Sequence2SuperKmer<span>::KmerFunctor<KType>::operator()(const KType&, size_t) [with KType = gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>; unsigned int span = 96]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::Kmer<span>::SuperKmer::addKmer(gatb::core::kmer::impl::Kmer<span>::SuperKmer::Kmer) [with unsigned int span = 96]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>*, std::vector<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex>, std::allocator<gatb::core::kmer::impl::Kmer<96>::KmerMinimizer<gatb::core::kmer::impl::Kmer<96>::ModelCanonical, gatb::core::kmer::impl::Kmer<96>::ComparatorMinimizerFrequencyOrLex> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<32>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<32>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<32>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
[ 57%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Distance = int; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::__cxx11::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o
cd /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src -I/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Distance = int; _Tp = gatb::core::debruijn::impl::kmerIndiceT<128>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::__cxx11::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:3:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:31:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable]
uint debug_index = 0;
^~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:765:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, bool) [with unsigned int SPAN = 128; std::__cxx11::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector<std::vector<unsigned int> >&, const std::vector<gatb::core::debruijn::impl::markedSeq<SPAN> >&, int, bool) [with int SPAN = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, bool) [with unsigned int SPAN = 128; std::__cxx11::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable]
uint32_t first_index = markedSequence_index;
^~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:545:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("rank array : size %lu \n",_ranks.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<128>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<128>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:3:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In instantiation of 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 64]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:31:16: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:236:10: warning: unused variable 'debug_index' [-Wunused-variable]
uint debug_index = 0;
^~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _Distance = int; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Distance = int; _Tp = gatb::core::debruijn::impl::kmerIndiceT<32>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf<elem_t, Hasher_t>::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t<long long unsigned int>; uint64_t = long long unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:765:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, bool) [with unsigned int SPAN = 64; std::__cxx11::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/include/None/BooPHF/BooPHF.h:841:11: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map<long long unsigned int, long long unsigned int, gatb::core::debruijn::impl::hasher_t<long long unsigned int>, std::equal_to<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::size_type' {aka 'unsigned int'} [-Wformat=]
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp: In instantiation of 'void gatb::core::debruijn::impl::determine_order_sequences(std::vector<std::vector<unsigned int> >&, const std::vector<gatb::core::debruijn::impl::markedSeq<SPAN> >&, int, bool) [with int SPAN = 64]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1106:48: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, bool) [with unsigned int SPAN = 64; std::__cxx11::string = std::__cxx11::basic_string<char>]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:29:9: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:258:18: warning: unused variable 'first_index' [-Wunused-variable]
uint32_t first_index = markedSequence_index;
^~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::__cxx11::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 32]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<128>&}; _Tp = gatb::core::debruijn::impl::markedSeq<128>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<128> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<128>, std::allocator<gatb::core::debruijn::impl::markedSeq<128> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<128>*, std::vector<gatb::core::debruijn::impl::markedSeq<128>, std::allocator<gatb::core::debruijn::impl::markedSeq<128> > > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::__cxx11::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 32]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:509,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:666,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp: In instantiation of 'gatb::core::tools::storage::impl::HDF5IteratorPatch<Item>::HDF5IteratorPatch(gatb::core::tools::storage::impl::IterableHDF5Patch<Item>*, size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count; size_t = unsigned int]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:48: required from 'gatb::core::tools::dp::Iterator<T>* gatb::core::tools::storage::impl::IterableHDF5Patch<Item>::iterator() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]'
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:335:25: required from here
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:436:16: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct gatb::core::kmer::impl::Kmer<64>::Count' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess]
memset (_data, 0, _blockSize*sizeof(Item));
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1568:12: note: 'struct gatb::core::kmer::impl::Kmer<64>::Count' declared here
struct Count : tools::misc::Abundance<Type,CountNumber>
^~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In function 'typename Functor::Result gatb::core::kmer::impl::Kmer<span>::ModelAbstract<ModelImpl, T>::execute(gatb::core::tools::misc::Data::Encoding_e, Functor) const [with Functor = gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed; ModelImpl = gatb::core::kmer::impl::Kmer<32>::ModelCanonical; T = gatb::core::kmer::impl::Kmer<32>::KmerCanonical; unsigned int span = 32]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:664:34: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<32>::ModelAbstract<gatb::core::kmer::impl::Kmer<32>::ModelCanonical, gatb::core::kmer::impl::Kmer<32>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
typename Functor::Result execute (tools::misc::Data::Encoding_e encoding, Functor action) const
^~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<128>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<128>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<128>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<128>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 128]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int>}; _Tp = std::tuple<long long unsigned int, int>; _Alloc = std::allocator<std::tuple<long long unsigned int, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/ograph.h:15,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:5,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In function 'typename Functor::Result gatb::core::kmer::impl::Kmer<span>::ModelAbstract<ModelImpl, T>::execute(gatb::core::tools::misc::Data::Encoding_e, Functor) const [with Functor = gatb::core::kmer::impl::Kmer<128>::ModelAbstract<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::KmerCanonical>::Functor_codeSeed; ModelImpl = gatb::core::kmer::impl::Kmer<128>::ModelCanonical; T = gatb::core::kmer::impl::Kmer<128>::KmerCanonical; unsigned int span = 128]':
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:664:34: note: parameter passing for argument of type 'gatb::core::kmer::impl::Kmer<128>::ModelAbstract<gatb::core::kmer::impl::Kmer<128>::ModelCanonical, gatb::core::kmer::impl::Kmer<128>::KmerCanonical>::Functor_codeSeed' changed in GCC 7.1
typename Functor::Result execute (tools::misc::Data::Encoding_e encoding, Functor action) const
^~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool)::InsertTravellerKmer::operator()(const gatb::core::bank::Sequence&) [with unsigned int SPAN = 128]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In lambda function:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<32>&}; _Tp = gatb::core::debruijn::impl::markedSeq<32>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<32> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<32>, std::allocator<gatb::core::debruijn::impl::markedSeq<32> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<32>*, std::vector<gatb::core::debruijn::impl::markedSeq<32>, std::allocator<gatb::core::debruijn::impl::markedSeq<32> > > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::prepare_uf(std::__cxx11::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 128]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<32>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<32>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gatb::core::debruijn::impl::kmerIndiceT<32>}; _Tp = gatb::core::debruijn::impl::kmerIndiceT<32>; _Alloc = std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Distance = int; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<32> >]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::graph3<span>::debruijn() [with unsigned int span = 32]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<32>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<32>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<32> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::__cxx11::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In lambda function:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_vector.h: In function 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, bool) [with unsigned int SPAN = 128]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int>}; _Tp = std::tuple<long long unsigned int, int>; _Alloc = std::allocator<std::tuple<long long unsigned int, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >; _Distance = int; _Tp = gatb::core::debruijn::impl::kmerIndiceT<128>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<128> >]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<128>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<128>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<128> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::__cxx11::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/bits/char_traits.h:39,
from /usr/include/c++/8/string:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/api/ICell.hpp:32,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Cell.hpp:29,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:37,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >]':
/usr/include/c++/8/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/8/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 32]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<1>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1183:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
}
^
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1183:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Distance = int; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<std::greater<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >]':
/usr/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Distance = int; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 64]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<2>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In function 'void gatb::core::debruijn::impl::prepare_uf(std::__cxx11::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 32]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int>*, std::vector<std::tuple<long long unsigned int, int> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::__cxx11::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 64]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >; _Distance = int; _Tp = gatb::core::debruijn::impl::kmerIndiceT<64>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::comparator<64> >]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::kmerIndiceT<64>*, std::vector<gatb::core::debruijn::impl::kmerIndiceT<64>, std::allocator<gatb::core::debruijn::impl::kmerIndiceT<64> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::prepare_uf(std::__cxx11::string, gatb::core::bank::IBank*, int, int&, int, int, uint64_t&, uint64_t) [with int SPAN = 64]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1:
/usr/include/c++/8/bits/stl_vector.h: In function 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, bool) [with unsigned int SPAN = 32]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2:
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1183:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
}
^
/<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:1183:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<128>&}; _Tp = gatb::core::debruijn::impl::markedSeq<128>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<128> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<128>, std::allocator<gatb::core::debruijn::impl::markedSeq<128> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<128>*, std::vector<gatb::core::debruijn::impl::markedSeq<128>, std::allocator<gatb::core::debruijn::impl::markedSeq<128> > > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::kmer::impl::Kmer<128>::Count; Functor = gatb::core::debruijn::impl::InsertIntoQueues<128>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, json::JSON>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/impl/System.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:35,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = json::JSON; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, json::JSON>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, json::JSON> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<std::tuple<long long unsigned int, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/system/api/types.hpp:44,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/api/Collection.hpp:33,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:39,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>}; _Tp = std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>; _Alloc = std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::markedSeq<64>&}; _Tp = gatb::core::debruijn::impl::markedSeq<64>; _Alloc = std::allocator<gatb::core::debruijn::impl::markedSeq<64> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::markedSeq<64>, std::allocator<gatb::core::debruijn::impl::markedSeq<64> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::markedSeq<64>*, std::vector<gatb::core::debruijn::impl::markedSeq<64>, std::allocator<gatb::core::debruijn::impl::markedSeq<64> > > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/BagCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionCache.hpp:34,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:41,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1,
from /<<BUILDDIR>>/gatb-core-1.4.1+git20181225.44d5a44+dfsg/obj-arm-linux-gnueabihf/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(const tuple_t&, const tuple_t&)> >]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run(_Args&& ...) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<void>, std::__future_base::_Result_base::_Deleter>, std::__future_base::_Task_state<_Fn, _Alloc, _Res(_Args ...)>::_M_run_delayed(_Args&& ..., std::weak_ptr<std::__future_base::_State_baseV2>) [with _Fn = std::_Bind<gatb::core::debruijn::impl::bcalm2(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, int, int, int, bool) [with unsigned int SPAN = 128]::<lambda(int)>(std::_Placeholder<1>)>; _Alloc = std::allocator<int>; _Res = void; _Args = {int}]::<lambda()>, void>; _ArgTypes = {}]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>*, std::vector<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int>, std::allocator<std::tuple<unsigned int, gatb::core::tools::math::LargeInt<4>, unsigned int, unsigned int, unsigned int> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::tuple<unsign