flexbar →
1:3.5.0-4 →
armhf → 2021-10-05 03:07:12
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| flexbar 1:3.5.0-4 (armhf) Tue, 05 Oct 2021 02:50:12 +0000 |
+==============================================================================+
Package: flexbar
Version: 1:3.5.0-4
Source Version: 1:3.5.0-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-c1c7c651-30ae-4d5d-b8d1-bc1d5ed530e8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'flexbar' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/flexbar.git
Please use:
git clone https://salsa.debian.org/med-team/flexbar.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 52.4 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main flexbar 1:3.5.0-4 (dsc) [2038 B]
Get:2 http://172.17.0.1/private bookworm-staging/main flexbar 1:3.5.0-4 (tar) [44.0 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main flexbar 1:3.5.0-4 (diff) [6316 B]
Fetched 52.4 kB in 0s (176 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/flexbar-FmLCs3/flexbar-3.5.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/flexbar-FmLCs3' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-k1XXZ6/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-k1XXZ6/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2760 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libtbb-dev, cmake, libseqan2-dev, zlib1g-dev, libbz2-dev
Filtered Build-Depends: debhelper-compat (= 13), libtbb-dev, cmake, libseqan2-dev, zlib1g-dev, libbz2-dev
dpkg-deb: building package 'sbuild-build-depends-flexbar-dummy' in '/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive/sbuild-build-depends-flexbar-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-flexbar-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ Sources [524 B]
Get:5 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ Packages [604 B]
Fetched 2461 B in 1s (3186 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install flexbar build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbrotli1 libbz2-dev libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libicu67 libjsoncpp24 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5
librhash0 librtmp1 libseqan2-dev libsigsegv2 libssh2-1 libsub-override-perl
libtbb-dev libtbb2 libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf
procps sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtbb-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl libgpm2
publicsuffix libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbrotli1 libbz2-dev libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libicu67 libjsoncpp24 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5
librhash0 librtmp1 libseqan2-dev libsigsegv2 libssh2-1 libsub-override-perl
libtbb-dev libtbb2 libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf
procps sbuild-build-depends-flexbar-dummy sensible-utils zlib1g-dev
0 upgraded, 53 newly installed, 0 to remove and 22 not upgraded.
Need to get 26.4 MB of archives.
After this operation, 114 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-k1XXZ6/apt_archive ./ sbuild-build-depends-flexbar-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-5 [60.5 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-5 [475 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf cmake-data all 3.18.4-2+rpi1 [1725 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libjsoncpp24 armhf 1.9.4-5 [67.4 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf librhash0 armhf 1.4.2-1 [141 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libuv1 armhf 1.42.0-1 [121 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf cmake armhf 3.18.4-2+rpi1 [3118 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libseqan2-dev all 2.4.0+dfsg-14 [1220 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libtbb2 armhf 2020.3-1 [118 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libtbb-dev armhf 2020.3-1 [313 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
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Preparing to unpack .../43-gettext_0.21-4_armhf.deb ...
Unpacking gettext (0.21-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../44-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../45-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../46-debhelper_13.5.2_all.deb ...
Unpacking debhelper (13.5.2) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../47-libbz2-dev_1.0.8-4_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.8-4) ...
Selecting previously unselected package libseqan2-dev.
Preparing to unpack .../48-libseqan2-dev_2.4.0+dfsg-14_all.deb ...
Unpacking libseqan2-dev (2.4.0+dfsg-14) ...
Selecting previously unselected package libtbb2:armhf.
Preparing to unpack .../49-libtbb2_2020.3-1_armhf.deb ...
Unpacking libtbb2:armhf (2020.3-1) ...
Selecting previously unselected package libtbb-dev:armhf.
Preparing to unpack .../50-libtbb-dev_2020.3-1_armhf.deb ...
Unpacking libtbb-dev:armhf (2020.3-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../51-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package sbuild-build-depends-flexbar-dummy.
Preparing to unpack .../52-sbuild-build-depends-flexbar-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-flexbar-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.4.1-2) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.37.2-1) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libtbb2:armhf (2020.3-1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up libseqan2-dev (2.4.0+dfsg-14) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libuv1:armhf (1.42.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20201114-4) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up libjsoncpp24:armhf (1.9.4-5) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.17) ...
Setting up librhash0:armhf (1.4.2-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up cmake-data (3.18.4-2+rpi1) ...
Setting up libtbb-dev:armhf (2020.3-1) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libprocps8:armhf (2:3.3.17-5) ...
Setting up libbz2-dev:armhf (1.0.8-4) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up libarchive13:armhf (3.4.3-2) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up procps (2:3.3.17-5) ...
Setting up libcurl4:armhf (7.74.0-1.3) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up cmake (3.18.4-2+rpi1) ...
Setting up debhelper (13.5.2) ...
Setting up sbuild-build-depends-flexbar-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 cmake_3.18.4-2+rpi1 cmake-data_3.18.4-2+rpi1 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_11.2.0-4+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-4+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl4_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libjsoncpp24_1.9.4-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 libreadline8_8.1-2 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libseqan2-dev_2.4.0+dfsg-14 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtbb-dev_2020.3-1 libtbb2_2020.3-1 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libuv1_1.42.0-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-flexbar-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.m1v1anTT/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct 1 14:17:40 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./flexbar_3.5.0-4.dsc
dpkg-source: info: extracting flexbar in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking flexbar_3.5.0.orig.tar.gz
dpkg-source: info: unpacking flexbar_3.5.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no_march_native.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-c1c7c651-30ae-4d5d-b8d1-bc1d5ed530e8
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package flexbar
dpkg-buildpackage: info: source version 1:3.5.0-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -f test/result_*fast[aq] test/result_*.log
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The C compiler identification is GNU 10.3.0
-- The CXX compiler identification is GNU 10.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test COMPILER_SUPPORTS_CXX14
-- Performing Test COMPILER_SUPPORTS_CXX14 - Success
-- Flexbar 32 bit architecture
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/DependInfo.cmake --color=
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/depend.internal".
Scanning dependencies of target flexbar
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 50%] Building CXX object src/CMakeFiles/flexbar.dir/Flexbar.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/flexbar.dir/Flexbar.cpp.o -c /<<PKGBUILDDIR>>/src/Flexbar.cpp
In file included from /<<PKGBUILDDIR>>/src/Flexbar.h:16,
from /<<PKGBUILDDIR>>/src/Flexbar.cpp:24:
/usr/include/tbb/task_scheduler_init.h:21:154: note: '#pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.'
21 | #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.")
| ^
In file included from /<<PKGBUILDDIR>>/src/Flexbar.cpp:24:
/<<PKGBUILDDIR>>/src/Flexbar.h: In function 'void startProcessing(Options&)':
/<<PKGBUILDDIR>>/src/Flexbar.h:243:16: warning: 'pipeline' is deprecated: tbb::pipeline is deprecated, use tbb::parallel_pipeline [-Wdeprecated-declarations]
243 | tbb::pipeline pipe;
| ^~~~
In file included from /<<PKGBUILDDIR>>/src/Flexbar.h:15,
from /<<PKGBUILDDIR>>/src/Flexbar.cpp:24:
/usr/include/tbb/pipeline.h:235:87: note: declared here
235 | class __TBB_DEPRECATED_MSG("tbb::pipeline is deprecated, use tbb::parallel_pipeline") pipeline {
| ^~~~~~~~
[100%] Linking CXX executable ../flexbar
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/flexbar.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/flexbar.dir/Flexbar.cpp.o -o ../flexbar -ltbb -lpthread -lz -lbz2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target flexbar
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd test ; \
export PATH="/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:$PATH" ; \
echo $PATH ; \
export HOME=/tmp ; \
which flexbar ; \
./flexbar_test.sh
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/flexbar
Testing fasta:
Test 1 OK
Test 2 OK
Test 3 OK
Test 4 OK
Test 5 OK
Testing fastq:
Test 1 OK
Test 2 OK
Test 3 OK
Test 4 OK
Test 5 OK
Testing decompression:
Test gzip OK
Test bzip2 OK
rm -f test/result_*fast[aq] test/result_*.log
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/flexbar/ -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/flexbar/usr/bin/flexbar contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/flexbar/usr/bin/flexbar was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'flexbar' in '../flexbar_3.5.0-4_armhf.deb'.
dpkg-deb: building package 'flexbar-dbgsym' in '../flexbar-dbgsym_3.5.0-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../flexbar_3.5.0-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-05T03:07:05Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
flexbar_3.5.0-4_armhf.changes:
------------------------------
Format: 1.8
Date: Fri, 01 Oct 2021 16:10:17 +0200
Source: flexbar
Binary: flexbar flexbar-dbgsym
Architecture: armhf
Version: 1:3.5.0-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
flexbar - flexible barcode and adapter removal for sequencing platforms
Changes:
flexbar (1:3.5.0-4) unstable; urgency=medium
.
* Fix watchfile to detect new versions on github
* Standards-Version: 4.6.0 (routine-update)
Checksums-Sha1:
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19e403bb6bafc203e4a607c57310498e2ebfe272 5753 flexbar_3.5.0-4_armhf.buildinfo
102b7bcfedaa5edfe4ad6c5de2990eeb4b87d25b 266728 flexbar_3.5.0-4_armhf.deb
Checksums-Sha256:
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Files:
098607f4e6b3fd46e3a04101bcf8230b 3958752 debug optional flexbar-dbgsym_3.5.0-4_armhf.deb
26cce6946443a7f0c378903426017932 5753 science optional flexbar_3.5.0-4_armhf.buildinfo
d2dcf336fba89fc42f6c8e95d2e0bc3c 266728 science optional flexbar_3.5.0-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
flexbar-dbgsym_3.5.0-4_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 3958752 bytes: control archive=536 bytes.
375 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: flexbar-dbgsym
Source: flexbar
Version: 1:3.5.0-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 4155
Depends: flexbar (= 1:3.5.0-4)
Section: debug
Priority: optional
Description: debug symbols for flexbar
Build-Ids: d14c16a01b1d7e37afda4f87ade1749bbbb52505
drwxr-xr-x root/root 0 2021-10-01 14:10 ./
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/lib/debug/.build-id/d1/
-rw-r--r-- root/root 4243716 2021-10-01 14:10 ./usr/lib/debug/.build-id/d1/4c16a01b1d7e37afda4f87ade1749bbbb52505.debug
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/share/
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-10-01 14:10 ./usr/share/doc/flexbar-dbgsym -> flexbar
flexbar_3.5.0-4_armhf.deb
-------------------------
new Debian package, version 2.0.
size 266728 bytes: control archive=1764 bytes.
1112 bytes, 21 lines control
2543 bytes, 31 lines md5sums
Package: flexbar
Version: 1:3.5.0-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 933
Depends: libbz2-1.0, libc6 (>= 2.7), libgcc-s1 (>= 3.5), libstdc++6 (>= 7), libtbb2 (>= 2020.3), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/seqan/flexbar
Description: flexible barcode and adapter removal for sequencing platforms
Flexbar preprocesses high-throughput sequencing data efficiently. It
demultiplexes barcoded runs and removes adapter sequences. Moreover,
trimming and filtering features are provided. Flexbar increases mapping
rates and improves genome and transcriptome assemblies. It supports
next-generation sequencing data in fasta/q and csfasta/q format from
Illumina, Roche 454, and the SOLiD platform.
.
Parameter names changed in Flexbar. Please review scripts. The recent
months, default settings were optimised, several bugs were fixed and
various improvements were made, e.g. revamped command-line interface,
new trimming modes as well as lower time and memory requirements.
drwxr-xr-x root/root 0 2021-10-01 14:10 ./
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/bin/
-rwxr-xr-x root/root 895080 2021-10-01 14:10 ./usr/bin/flexbar
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/share/
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/share/doc/flexbar/
-rw-r--r-- root/root 205 2021-10-01 14:10 ./usr/share/doc/flexbar/README.test
-rw-r--r-- root/root 1967 2021-10-01 14:10 ./usr/share/doc/flexbar/changelog.Debian.gz
-rw-r--r-- root/root 1315 2021-10-01 14:10 ./usr/share/doc/flexbar/copyright
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/share/doc/flexbar/examples/
-rw-r--r-- root/root 12 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/adapters.fasta
-rw-r--r-- root/root 24 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/adapters1.fasta
-rw-r--r-- root/root 28 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/adapters2.fasta
-rw-r--r-- root/root 37 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/barcodes.fasta
-rw-r--r-- root/root 37 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/barcodes_N.fasta
-rw-r--r-- root/root 1274 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_any.fasta
-rw-r--r-- root/root 1586 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_any.fastq
-rw-r--r-- root/root 767 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_left.fasta
-rw-r--r-- root/root 953 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_left.fastq
-rw-r--r-- root/root 1459 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_left_tail.fasta
-rw-r--r-- root/root 1893 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_left_tail.fastq
-rw-r--r-- root/root 1169 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_right.fasta
-rw-r--r-- root/root 1430 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_right.fastq
-rw-r--r-- root/root 1507 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_right_tail.fasta
-rw-r--r-- root/root 1940 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_right_tail.fastq
-rwxr-xr-x root/root 170 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/flexbar_test.sh
-rwxr-xr-x root/root 1718 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/flexbar_test_fasta.sh
-rwxr-xr-x root/root 1718 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/flexbar_test_fastq.sh
-rwxr-xr-x root/root 707 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/flexbar_test_zip.sh
-rw-r--r-- root/root 1598 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/reads.fasta
-rw-r--r-- root/root 2059 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/reads.fastq
-rw-r--r-- root/root 509 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/reads.fastq.bz2
-rw-r--r-- root/root 421 2021-10-01 14:10 ./usr/share/doc/flexbar/examples/reads.fastq.gz
-rw-r--r-- root/root 285 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/reads1.fasta
-rw-r--r-- root/root 282 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/reads2.fasta
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/share/lintian/
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 127 2021-10-01 14:10 ./usr/share/lintian/overrides/flexbar
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/share/man/
drwxr-xr-x root/root 0 2021-10-01 14:10 ./usr/share/man/man1/
-rw-r--r-- root/root 1883 2021-10-01 14:10 ./usr/share/man/man1/flexbar.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 46072
Build-Time: 510
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 440
Job: flexbar_1:3.5.0-4
Machine Architecture: armhf
Package: flexbar
Package-Time: 1013
Source-Version: 1:3.5.0-4
Space: 46072
Status: successful
Version: 1:3.5.0-4
--------------------------------------------------------------------------------
Finished at 2021-10-05T03:07:05Z
Build needed 00:16:53, 46072k disc space