Raspbian Package Auto-Building

Build log for flexbar (1:3.5.0-3) on armhf

flexbar1:3.5.0-3armhf → 2020-12-24 11:27:32

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04

+==============================================================================+
| flexbar 1:3.5.0-3 (armhf)                    Thu, 24 Dec 2020 11:10:08 +0000 |
+==============================================================================+

Package: flexbar
Version: 1:3.5.0-3
Source Version: 1:3.5.0-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-93b83b51-5de5-43fa-a384-7913f15d410e' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.0 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 25.0 MB in 25s (1003 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'flexbar' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/flexbar.git
Please use:
git clone https://salsa.debian.org/med-team/flexbar.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 52.3 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main flexbar 1:3.5.0-3 (dsc) [2042 B]
Get:2 http://172.17.0.1/private bullseye-staging/main flexbar 1:3.5.0-3 (tar) [44.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main flexbar 1:3.5.0-3 (diff) [6284 B]
Fetched 52.3 kB in 0s (650 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/flexbar-5RwRFr/flexbar-3.5.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/flexbar-5RwRFr' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-2hputo/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-2hputo/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-2hputo/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2875 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  bsdextrautils krb5-locales libnss-nis libnss-nisplus libpam-cap netbase
  sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 4 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12543 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), libtbb-dev, cmake, libseqan2-dev, zlib1g-dev, libbz2-dev
Filtered Build-Depends: debhelper-compat (= 13), libtbb-dev, cmake, libseqan2-dev, zlib1g-dev, libbz2-dev
dpkg-deb: building package 'sbuild-build-depends-flexbar-dummy' in '/<<BUILDDIR>>/resolver-2hputo/apt_archive/sbuild-build-depends-flexbar-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-flexbar-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ Sources [524 B]
Get:5 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ Packages [604 B]
Fetched 2461 B in 1s (2316 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install flexbar build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libnss-nis libnss-nisplus libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev cmake cmake-data debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libarchive13 libbrotli1
  libbz2-dev libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1
  libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libjsoncpp24
  libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8
  libpsl5 librhash0 librtmp1 libseqan2-dev libsigsegv2 libssh2-1
  libsub-override-perl libtbb-dev libtbb2 libtool libuchardet0 libuv1 libxml2
  m4 man-db po-debconf procps zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
  gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtbb-doc
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
  libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 publicsuffix
  libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev cmake cmake-data debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libarchive13 libbrotli1
  libbz2-dev libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1
  libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libjsoncpp24
  libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8
  libpsl5 librhash0 librtmp1 libseqan2-dev libsigsegv2 libssh2-1
  libsub-override-perl libtbb-dev libtbb2 libtool libuchardet0 libuv1 libxml2
  m4 man-db po-debconf procps sbuild-build-depends-flexbar-dummy zlib1g-dev
0 upgraded, 53 newly installed, 0 to remove and 4 not upgraded.
Need to get 27.1 MB of archives.
After this operation, 117 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-2hputo/apt_archive ./ sbuild-build-depends-flexbar-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20201114-1 [79.5 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-3 [32.4 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-12 [313 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.18.4-1+rpi1 [1725 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-5 [8288 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.9.0-2 [141 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.72.0-1 [300 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp24 armhf 1.9.4-4 [67.0 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.4.0-1 [133 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.40.0-1 [118 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.18.4-1+rpi1+b1 [3111 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3 [188 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20201015-2 [162 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-2 [1178 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3 [1009 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libseqan2-dev all 2.4.0+dfsg-12 [1220 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libtbb2 armhf 2020.3-1 [118 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libtbb-dev armhf 2020.3-1 [313 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libuchardet0:armhf.
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+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.phOK19sE/trustedkeys.kbx': General error
gpgv: Signature made Tue Dec 22 13:14:40 2020 UTC
gpgv:                using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv:                issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./flexbar_3.5.0-3.dsc
dpkg-source: info: extracting flexbar in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking flexbar_3.5.0.orig.tar.gz
dpkg-source: info: unpacking flexbar_3.5.0-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no_march_native.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-93b83b51-5de5-43fa-a384-7913f15d410e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package flexbar
dpkg-buildpackage: info: source version 1:3.5.0-3
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -f test/result_*fast[aq] test/result_*.log
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The C compiler identification is GNU 10.2.1
-- The CXX compiler identification is GNU 10.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test COMPILER_SUPPORTS_CXX14
-- Performing Test COMPILER_SUPPORTS_CXX14 - Success
-- Flexbar 32 bit architecture
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 
-- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8") 
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
   dh_auto_build -a
	cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/DependInfo.cmake --color=
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/depend.internal".
Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/depend.internal".
Scanning dependencies of target flexbar
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 50%] Building CXX object src/CMakeFiles/flexbar.dir/Flexbar.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/flexbar.dir/Flexbar.cpp.o -c /<<PKGBUILDDIR>>/src/Flexbar.cpp
In file included from /<<PKGBUILDDIR>>/src/Flexbar.h:16,
                 from /<<PKGBUILDDIR>>/src/Flexbar.cpp:24:
/usr/include/tbb/task_scheduler_init.h:21:154: note: '#pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.'
   21 | #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
In file included from /<<PKGBUILDDIR>>/src/Flexbar.cpp:24:
/<<PKGBUILDDIR>>/src/Flexbar.h: In function 'void startProcessing(Options&)':
/<<PKGBUILDDIR>>/src/Flexbar.h:243:16: warning: 'pipeline' is deprecated: tbb::pipeline is deprecated, use tbb::parallel_pipeline [-Wdeprecated-declarations]
  243 |  tbb::pipeline pipe;
      |                ^~~~
In file included from /<<PKGBUILDDIR>>/src/Flexbar.h:15,
                 from /<<PKGBUILDDIR>>/src/Flexbar.cpp:24:
/usr/include/tbb/pipeline.h:235:87: note: declared here
  235 | class __TBB_DEPRECATED_MSG("tbb::pipeline is deprecated, use tbb::parallel_pipeline") pipeline {
      |                                                                                       ^~~~~~~~
[100%] Linking CXX executable ../flexbar
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/flexbar.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/flexbar.dir/Flexbar.cpp.o -o ../flexbar  -ltbb -lpthread -lz -lbz2 
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target flexbar
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd test ; \
export PATH="/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:$PATH" ; \
echo $PATH ; \
export HOME=/tmp ; \
which flexbar ; \
./flexbar_test.sh
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/flexbar

Testing fasta:
Test 1 OK
Test 2 OK
Test 3 OK
Test 4 OK
Test 5 OK

Testing fastq:
Test 1 OK
Test 2 OK
Test 3 OK
Test 4 OK
Test 5 OK

Testing decompression:
Test gzip OK
Test bzip2 OK

rm -f test/result_*fast[aq] test/result_*.log
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installexamples -a
   dh_installman -a
   dh_lintian -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a -a
   dh_strip -a -a
   dh_makeshlibs -a -a
   dh_shlibdeps -a -a
dpkg-shlibdeps: warning: debian/flexbar/usr/bin/flexbar contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/flexbar/usr/bin/flexbar was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'flexbar' in '../flexbar_3.5.0-3_armhf.deb'.
dpkg-deb: building package 'flexbar-dbgsym' in '../flexbar-dbgsym_3.5.0-3_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../flexbar_3.5.0-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-24T11:27:22Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


flexbar_3.5.0-3_armhf.changes:
------------------------------

Format: 1.8
Date: Tue, 22 Dec 2020 09:30:50 +0530
Source: flexbar
Binary: flexbar flexbar-dbgsym
Architecture: armhf
Version: 1:3.5.0-3
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <npatra974@gmail.com>
Description:
 flexbar    - flexible barcode and adapter removal for sequencing platforms
Changes:
 flexbar (1:3.5.0-3) unstable; urgency=medium
 .
   * Team Upload.
   [ Steffen Möller ]
   * Added ref to conda
 .
   [ Nilesh Patra ]
   * Clean up after build-time tests
     (Fixes un-reproducible build)
   * Really add autopkgtests
   * Remove useless file
   * Standards-Version: 4.5.1 (routine-update)
   * debhelper-compat 13 (routine-update)
   * Remove trailing whitespace in debian/changelog (routine-update)
   * Add salsa-ci file (routine-update)
   * Rules-Requires-Root: no (routine-update)
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
     Repository-Browse.
   * Switch watch version to 4
Checksums-Sha1:
 d68b2df6f2d65c69c722cc304f9f8fd817e22667 3961536 flexbar-dbgsym_3.5.0-3_armhf.deb
 53a7d2fd084fba187a93c6c9a153a6b2b8a3a9d2 5811 flexbar_3.5.0-3_armhf.buildinfo
 693fc426aeb31ffeaa8e6277645d689ba1ec4379 267120 flexbar_3.5.0-3_armhf.deb
Checksums-Sha256:
 d605bc62ab180ec2d95e99a02c03d397489edfbd51ba833f2657fb0ba7a98f54 3961536 flexbar-dbgsym_3.5.0-3_armhf.deb
 2508c533f784f69e5886118a1225d1c7a70657fe13406c64d19214bcc971f246 5811 flexbar_3.5.0-3_armhf.buildinfo
 27ae825854fa75aa3f7058bb88cf1a5f4c58684e63ef88d4db55cc60099d85b3 267120 flexbar_3.5.0-3_armhf.deb
Files:
 cbfe59200d11fa8e0f861d58151dd20e 3961536 debug optional flexbar-dbgsym_3.5.0-3_armhf.deb
 f6cedcd3ae185c0b984a1f1978220373 5811 science optional flexbar_3.5.0-3_armhf.buildinfo
 faf3d59b3f69f3d9e0ea57360a068843 267120 science optional flexbar_3.5.0-3_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


flexbar-dbgsym_3.5.0-3_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 3961536 bytes: control archive=536 bytes.
     375 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: flexbar-dbgsym
 Source: flexbar
 Version: 1:3.5.0-3
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 4158
 Depends: flexbar (= 1:3.5.0-3)
 Section: debug
 Priority: optional
 Description: debug symbols for flexbar
 Build-Ids: fbfca9ca16faaddddc6a3fa55adc8d3a5d8286ba

drwxr-xr-x root/root         0 2020-12-22 04:00 ./
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/lib/
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/lib/debug/.build-id/fb/
-rw-r--r-- root/root   4246996 2020-12-22 04:00 ./usr/lib/debug/.build-id/fb/fca9ca16faaddddc6a3fa55adc8d3a5d8286ba.debug
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/share/
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-12-22 04:00 ./usr/share/doc/flexbar-dbgsym -> flexbar


flexbar_3.5.0-3_armhf.deb
-------------------------

 new Debian package, version 2.0.
 size 267120 bytes: control archive=1768 bytes.
    1112 bytes,    21 lines      control              
    2543 bytes,    31 lines      md5sums              
 Package: flexbar
 Version: 1:3.5.0-3
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 933
 Depends: libbz2-1.0, libc6 (>= 2.7), libgcc-s1 (>= 3.5), libstdc++6 (>= 7), libtbb2 (>= 2020.3), zlib1g (>= 1:1.1.4)
 Section: science
 Priority: optional
 Homepage: https://github.com/seqan/flexbar
 Description: flexible barcode and adapter removal for sequencing platforms
  Flexbar preprocesses high-throughput sequencing data efficiently. It
  demultiplexes barcoded runs and removes adapter sequences. Moreover,
  trimming and filtering features are provided. Flexbar increases mapping
  rates and improves genome and transcriptome assemblies. It supports
  next-generation sequencing data in fasta/q and csfasta/q format from
  Illumina, Roche 454, and the SOLiD platform.
  .
  Parameter names changed in Flexbar. Please review scripts. The recent
  months, default settings were optimised, several bugs were fixed and
  various improvements were made, e.g. revamped command-line interface,
  new trimming modes as well as lower time and memory requirements.

drwxr-xr-x root/root         0 2020-12-22 04:00 ./
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/bin/
-rwxr-xr-x root/root    895080 2020-12-22 04:00 ./usr/bin/flexbar
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/share/
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/share/doc/flexbar/
-rw-r--r-- root/root       205 2020-12-21 19:48 ./usr/share/doc/flexbar/README.test
-rw-r--r-- root/root      1911 2020-12-22 04:00 ./usr/share/doc/flexbar/changelog.Debian.gz
-rw-r--r-- root/root      1315 2020-12-22 04:00 ./usr/share/doc/flexbar/copyright
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/share/doc/flexbar/examples/
-rw-r--r-- root/root        12 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/adapters.fasta
-rw-r--r-- root/root        24 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/adapters1.fasta
-rw-r--r-- root/root        28 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/adapters2.fasta
-rw-r--r-- root/root        37 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/barcodes.fasta
-rw-r--r-- root/root        37 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/barcodes_N.fasta
-rw-r--r-- root/root      1274 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_any.fasta
-rw-r--r-- root/root      1586 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_any.fastq
-rw-r--r-- root/root       767 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_left.fasta
-rw-r--r-- root/root       953 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_left.fastq
-rw-r--r-- root/root      1459 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_left_tail.fasta
-rw-r--r-- root/root      1893 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_left_tail.fastq
-rw-r--r-- root/root      1169 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_right.fasta
-rw-r--r-- root/root      1430 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_right.fastq
-rw-r--r-- root/root      1507 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_right_tail.fasta
-rw-r--r-- root/root      1940 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/correct_result_right_tail.fastq
-rwxr-xr-x root/root       170 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/flexbar_test.sh
-rwxr-xr-x root/root      1718 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/flexbar_test_fasta.sh
-rwxr-xr-x root/root      1718 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/flexbar_test_fastq.sh
-rwxr-xr-x root/root       707 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/flexbar_test_zip.sh
-rw-r--r-- root/root      1598 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/reads.fasta
-rw-r--r-- root/root      2059 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/reads.fastq
-rw-r--r-- root/root       509 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/reads.fastq.bz2
-rw-r--r-- root/root       421 2020-12-22 04:00 ./usr/share/doc/flexbar/examples/reads.fastq.gz
-rw-r--r-- root/root       285 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/reads1.fasta
-rw-r--r-- root/root       282 2019-05-07 12:59 ./usr/share/doc/flexbar/examples/reads2.fasta
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/share/lintian/
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       127 2020-12-22 04:00 ./usr/share/lintian/overrides/flexbar
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/share/man/
drwxr-xr-x root/root         0 2020-12-22 04:00 ./usr/share/man/man1/
-rw-r--r-- root/root      1883 2020-12-22 04:00 ./usr/share/man/man1/flexbar.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 46072
Build-Time: 522
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 463
Job: flexbar_1:3.5.0-3
Machine Architecture: armhf
Package: flexbar
Package-Time: 1034
Source-Version: 1:3.5.0-3
Space: 46072
Status: successful
Version: 1:3.5.0-3
--------------------------------------------------------------------------------
Finished at 2020-12-24T11:27:22Z
Build needed 00:17:14, 46072k disc space