fitgcp →
0.0.20130418-2 →
armhf → 2015-10-12 10:27:01
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-02
╔══════════════════════════════════════════════════════════════════════════════╗
║ fitgcp 0.0.20130418-2 (armhf) 12 Oct 2015 10:20 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: fitgcp
Version: 0.0.20130418-2
Source Version: 0.0.20130418-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/fitgcp-iQApph/fitgcp-0.0.20130418' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/fitgcp-iQApph' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-86753c63-850b-456a-a40a-68ea9439d1a4' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8354 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.2 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
Fetched 18.6 MB in 39s (476 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'fitgcp' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/fitgcp.git
Need to get 14.8 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main fitgcp 0.0.20130418-2 (dsc) [1953 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main fitgcp 0.0.20130418-2 (tar) [8368 B]
Get:3 http://172.17.0.1/private/ stretch-staging/main fitgcp 0.0.20130418-2 (diff) [4476 B]
Fetched 14.8 kB in 0s (362 kB/s)
Download complete and in download only mode
Check architectures
───────────────────
Check dependencies
──────────────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-BICSlF/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 46 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12972 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), python, python-pysam
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), python, python-pysam
dpkg-deb: building package 'sbuild-build-depends-fitgcp-dummy' in '/«BUILDDIR»/resolver-7JWQmI/apt_archive/sbuild-build-depends-fitgcp-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install fitgcp build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libcroco3 libexpat1 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libhts1 libicu55 libmagic1
libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
po-debconf python python-minimal python-pysam python2.7 python2.7-minimal
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff less www-browser libmail-box-perl
python-doc python-tk python2.7-doc binfmt-support
Recommended packages:
curl wget lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libcroco3 libexpat1 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libhts1 libicu55 libmagic1
libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
po-debconf python python-minimal python-pysam python2.7 python2.7-minimal
sbuild-build-depends-fitgcp-dummy
0 upgraded, 34 newly installed, 0 to remove and 46 not upgraded.
Need to get 22.1 MB/22.1 MB of archives.
After this operation, 79.1 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.3-1 [975 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libpython2.7-minimal armhf 2.7.10-4 [379 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main python2.7-minimal armhf 2.7.10-4 [1092 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main python-minimal armhf 2.7.9-1 [40.1 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main mime-support all 3.59 [36.4 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.11.1-1 [391 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libpython2.7-stdlib armhf 2.7.10-4 [1736 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main python2.7 armhf 2.7.10-4 [258 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libpython-stdlib armhf 2.7.9-1 [19.6 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main python armhf 2.7.9-1 [151 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.46.0-2 [2376 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libicu55 armhf 55.1-5 [7378 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.2+zdfsg1-4 [797 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.25-2 [250 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.25-2 [61.2 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.6-1 [119 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.6-1 [1393 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libarchive-zip-perl all 1.53-1 [97.3 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libfile-stripnondeterminism-perl all 0.012-1 [10.6 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main dh-strip-nondeterminism all 0.012-1 [7282 B]
Get:31 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20151005 [817 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libhts1 armhf 1.2.1-1+rpi1 [190 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main python-pysam armhf 0.8.3+ds1-3 [661 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 22.1 MB in 5s (3981 kB/s)
Selecting previously unselected package groff-base.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12972 files and directories currently installed.)
Preparing to unpack .../groff-base_1.22.3-1_armhf.deb ...
Unpacking groff-base (1.22.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.6_armhf.deb ...
Unpacking bsdmainutils (9.0.6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.4.1-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.3-1_armhf.deb ...
Unpacking man-db (2.7.3-1) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../libpython2.7-minimal_2.7.10-4_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.10-4) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../python2.7-minimal_2.7.10-4_armhf.deb ...
Unpacking python2.7-minimal (2.7.10-4) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../python-minimal_2.7.9-1_armhf.deb ...
Unpacking python-minimal (2.7.9-1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../mime-support_3.59_all.deb ...
Unpacking mime-support (3.59) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.1.0-7_armhf.deb ...
Unpacking libexpat1:armhf (2.1.0-7) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.2.1-3_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-3) ...
Selecting previously unselected package libsqlite3-0:armhf.
Preparing to unpack .../libsqlite3-0_3.8.11.1-1_armhf.deb ...
Unpacking libsqlite3-0:armhf (3.8.11.1-1) ...
Selecting previously unselected package libssl1.0.0:armhf.
Preparing to unpack .../libssl1.0.0_1.0.2d-1_armhf.deb ...
Unpacking libssl1.0.0:armhf (1.0.2d-1) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../libpython2.7-stdlib_2.7.10-4_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.10-4) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../python2.7_2.7.10-4_armhf.deb ...
Unpacking python2.7 (2.7.10-4) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../libpython-stdlib_2.7.9-1_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.9-1) ...
Setting up libpython2.7-minimal:armhf (2.7.10-4) ...
Setting up python2.7-minimal (2.7.10-4) ...
Setting up python-minimal (2.7.9-1) ...
Selecting previously unselected package python.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 14337 files and directories currently installed.)
Preparing to unpack .../python_2.7.9-1_armhf.deb ...
Unpacking python (2.7.9-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.46.0-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.46.0-2) ...
Selecting previously unselected package libicu55:armhf.
Preparing to unpack .../libicu55_55.1-5_armhf.deb ...
Unpacking libicu55:armhf (55.1-5) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.2+zdfsg1-4_armhf.deb ...
Unpacking libxml2:armhf (2.9.2+zdfsg1-4) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.8-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.8-3) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5.2_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5.2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.25-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.25-2) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.25-2_armhf.deb ...
Unpacking file (1:5.25-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.6-1_armhf.deb ...
Unpacking gettext-base (0.19.6-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.6-1_armhf.deb ...
Unpacking gettext (0.19.6-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.18_all.deb ...
Unpacking po-debconf (1.0.18) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../libarchive-zip-perl_1.53-1_all.deb ...
Unpacking libarchive-zip-perl (1.53-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../libfile-stripnondeterminism-perl_0.012-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.012-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../dh-strip-nondeterminism_0.012-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.012-1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20151005_all.deb ...
Unpacking debhelper (9.20151005) ...
Selecting previously unselected package libhts1:armhf.
Preparing to unpack .../libhts1_1.2.1-1+rpi1_armhf.deb ...
Unpacking libhts1:armhf (1.2.1-1+rpi1) ...
Selecting previously unselected package python-pysam.
Preparing to unpack .../python-pysam_0.8.3+ds1-3_armhf.deb ...
Unpacking python-pysam (0.8.3+ds1-3) ...
Selecting previously unselected package sbuild-build-depends-fitgcp-dummy.
Preparing to unpack .../sbuild-build-depends-fitgcp-dummy.deb ...
Unpacking sbuild-build-depends-fitgcp-dummy (0.invalid.0) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-1) ...
Setting up man-db (2.7.3-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up mime-support (3.59) ...
Setting up libexpat1:armhf (2.1.0-7) ...
Setting up libffi6:armhf (3.2.1-3) ...
Setting up libsqlite3-0:armhf (3.8.11.1-1) ...
Setting up libssl1.0.0:armhf (1.0.2d-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.10-4) ...
Setting up python2.7 (2.7.10-4) ...
Setting up libpython-stdlib:armhf (2.7.9-1) ...
Setting up python (2.7.9-1) ...
Setting up libglib2.0-0:armhf (2.46.0-2) ...
No schema files found: doing nothing.
Setting up libicu55:armhf (55.1-5) ...
Setting up libxml2:armhf (2.9.2+zdfsg1-4) ...
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.6-1) ...
Setting up gettext (0.19.6-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.18) ...
Setting up libarchive-zip-perl (1.53-1) ...
Setting up libfile-stripnondeterminism-perl (0.012-1) ...
Setting up libhts1:armhf (1.2.1-1+rpi1) ...
Setting up python-pysam (0.8.3+ds1-3) ...
Setting up debhelper (9.20151005) ...
Setting up sbuild-build-depends-fitgcp-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.012-1) ...
Processing triggers for libc-bin (2.19-19) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-1 dpkg-dev_1.18.2 g++-4.9_4.9.3-4 g++-5_5.2.1-16+rpi1 gcc-4.9_4.9.3-4 gcc-5_5.2.1-16+rpi1 libc6-dev_2.19-19 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-16+rpi1 libstdc++6_5.2.1-16+rpi1 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.10.2 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.1-1 bsdmainutils_9.0.6 bsdutils_1:2.26.2-9 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-4.9_4.9.3-4 cpp-5_5.2.1-16+rpi1 dash_0.5.7-4 debconf_1.5.57 debfoster_2.7-2 debhelper_9.20151005 debianutils_4.5.1 dh-strip-nondeterminism_0.012-1 diffutils_1:3.3-1 dmsetup_2:1.02.104-1 dpkg_1.18.2 dpkg-dev_1.18.2 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-9 g++_4:5.2.1-4+rpi2 g++-4.9_4.9.3-4 g++-5_5.2.1-16+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-4 gcc-4.9_4.9.3-4 gcc-4.9-base_4.9.3-4 gcc-5_5.2.1-16+rpi1 gcc-5-base_5.2.1-16+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.19-5 gpgv_1.4.19-5 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.16 init_1.23 init-system-helpers_1.23 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.9.2-3 libapt-pkg4.12_1.0.9.10 libapt-pkg4.16_1.0.10.2 libarchive-zip-perl_1.53-1 libasan1_4.9.3-4 libasan2_5.2.1-16+rpi1 libatomic1_5.2.1-16+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-1 libaudit1_1:2.4.4-1 libblkid1_2.26.2-9 libbz2-1.0_1.0.6-8 libc-bin_2.19-19 libc-dev-bin_2.19-19 libc6_2.19-19 libc6-dev_2.19-19 libcap2_1:2.24-11 libcap2-bin_1:2.24-11 libcc1-0_5.2.1-16+rpi1 libcloog-isl4_0.18.3-1 libcomerr2_1.42.13-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-11 libdbus-1-3_1.8.20-1 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.2 libdrm2_2.4.64-1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.26.2-9 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.012-1 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.3-4 libgcc-5-dev_5.2.1-16+rpi1 libgcc1_1:5.2.1-16+rpi1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.0-2 libgmp10_2:6.0.0+dfsg-7+rpi1 libgomp1_5.2.1-16+rpi1 libgpg-error0_1.19-2 libhts1_1.2.1-1+rpi1 libicu55_55.1-5 libisl13_0.14-2 libklibc_2.0.4-2+rpi1 libkmod2_21-1 liblocale-gettext-perl_1.05-9 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.26.2-9 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20150810-1 libncursesw5_6.0+20150810-1 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7.1 libpipeline1_1.4.1-1 libpng12-0_1.2.50-2+b2 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.10-4 libpython2.7-stdlib_2.7.10-4 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2+b1 libsmartcols1_2.26.2-9 libsqlite3-0_3.8.11.1-1 libss2_1.42.13-1 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-16+rpi1 libstdc++6_5.2.1-16+rpi1 libsystemd0_225-1 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20150810-1 libubsan0_5.2.1-16+rpi1 libudev1_225-1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-9 libxml2_2.9.2+zdfsg1-4 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.3-1 mawk_1.3.3-17 mime-support_3.59 mount_2.26.2-9 mountall_2.54 multiarch-support_2.19-19 nano_2.4.2-1 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.10-2 python_2.7.9-1 python-minimal_2.7.9-1 python-pysam_0.8.3+ds1-3 python2.7_2.7.10-4 python2.7-minimal_2.7.10-4 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fitgcp-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_225-1 systemd-sysv_225-1 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-1 tzdata_2015f-1 udev_225-1 util-linux_2.26.2-9 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Sep 30 11:49:08 2014 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./fitgcp_0.0.20130418-2.dsc
dpkg-source: info: extracting fitgcp in fitgcp-0.0.20130418
dpkg-source: info: unpacking fitgcp_0.0.20130418.orig.tar.xz
dpkg-source: info: unpacking fitgcp_0.0.20130418-2.debian.tar.xz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-86753c63-850b-456a-a40a-68ea9439d1a4
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package fitgcp
dpkg-buildpackage: source version 0.0.20130418-2
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build fitgcp-0.0.20130418
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2
dh_testdir
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch --with python2
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch --with python2
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_python2 -a
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_fixperms
find debian -name "*.py" -exec chmod 755 \{\} \;
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package fitgcp: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'fitgcp' in '../fitgcp_0.0.20130418-2_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../fitgcp_0.0.20130418-2_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build fitgcp-0.0.20130418
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151012-1025
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
fitgcp_0.0.20130418-2_armhf.changes:
────────────────────────────────────
Format: 1.8
Date: Tue, 30 Sep 2014 13:46:48 +0200
Source: fitgcp
Binary: fitgcp
Architecture: armhf
Version: 0.0.20130418-2
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
fitgcp - fitting genome coverage distributions with mixture models
Changes:
fitgcp (0.0.20130418-2) unstable; urgency=medium
.
[ James McCoy ]
* Move debian/upstream to debian/upstream/metadata
.
[ Charles Plessy ]
* Build-depend on python instead of python-all-dev.
* Rely on ${python:Depends} for the dependency on Python.
* Normalised debian/control with config-model-edit.
* Conforms with Policy 3.9.6.
.
[ Andreas Tille ]
* Assume Build-Depends: python-pysam to make implicitly clear that
the package can exist only on those architectures where python-pysam
is available (thanks to Charles Plessy for the hint)
Checksums-Sha1:
10ee9b3d1104363dcec5603f6be330712365408b 12160 fitgcp_0.0.20130418-2_armhf.deb
Checksums-Sha256:
83213ef6e62eb3b1f89fa55ba221d153ab44f89923bd6034f57cdc0b833306c4 12160 fitgcp_0.0.20130418-2_armhf.deb
Files:
4adac8d355f2ec2a68f5424049c9d7c0 12160 science optional fitgcp_0.0.20130418-2_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
fitgcp_0.0.20130418-2_armhf.deb
───────────────────────────────
new debian package, version 2.0.
size 12160 bytes: control archive=1347 bytes.
1312 bytes, 25 lines control
409 bytes, 6 lines md5sums
181 bytes, 9 lines * postinst #!/bin/sh
249 bytes, 14 lines * prerm #!/bin/sh
Package: fitgcp
Version: 0.0.20130418-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 50
Depends: python:any (>= 2.6.6-7~), python-scipy, python-numpy, python-pysam
Section: science
Priority: optional
Homepage: http://sourceforge.net/projects/fitgcp/
Description: fitting genome coverage distributions with mixture models
Genome coverage, the number of sequencing reads mapped to a position in
a genome, is an insightful indicator of irregularities within sequencing
experiments. While the average genome coverage is frequently used within
algorithms in computational genomics, the complete information available
in coverage profiles (i.e. histograms over all coverages) is currently
not exploited to its full extent. Thus, biases such as fragmented or
erroneous reference genomes often remain unaccounted for. Making this
information accessible can improve the quality of sequencing experiments
and quantitative analyses.
.
fitGCP is a framework for fitting mixtures of probability distributions
to genome coverage profiles. Besides commonly used distributions, fitGCP
uses distributions tailored to account for common artifacts. The mixture
models are iteratively fitted based on the Expectation-Maximization
algorithm.
drwxr-xr-x root/root 0 2015-10-12 10:25 ./
drwxr-xr-x root/root 0 2015-10-12 10:25 ./usr/
drwxr-xr-x root/root 0 2015-10-12 10:25 ./usr/bin/
lrwxrwxrwx root/root 0 2015-10-12 10:25 ./usr/bin/fitgcp -> ../share/fitgcp/fitGCP.py
drwxr-xr-x root/root 0 2015-10-12 10:25 ./usr/share/
drwxr-xr-x root/root 0 2015-10-12 10:25 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-10-12 10:25 ./usr/share/doc/fitgcp/
-rw-r--r-- root/root 3809 2013-03-26 16:57 ./usr/share/doc/fitgcp/README.txt
-rw-r--r-- root/root 465 2014-09-30 11:48 ./usr/share/doc/fitgcp/changelog.Debian.gz
-rw-r--r-- root/root 1832 2014-09-30 11:48 ./usr/share/doc/fitgcp/copyright
drwxr-xr-x root/root 0 2015-10-12 10:25 ./usr/share/fitgcp/
-rwxr-xr-x root/root 24598 2014-02-07 15:52 ./usr/share/fitgcp/fitGCP.py
drwxr-xr-x root/root 0 2015-10-12 10:25 ./usr/share/man/
drwxr-xr-x root/root 0 2015-10-12 10:25 ./usr/share/man/man1/
-rw-r--r-- root/root 1159 2015-10-12 10:25 ./usr/share/man/man1/fitgcp.1.gz
drwxr-xr-x root/root 0 2015-10-12 10:25 ./usr/share/python/
drwxr-xr-x root/root 0 2015-10-12 10:25 ./usr/share/python/runtime.d/
-rwxr-xr-x root/root 133 2015-10-12 10:25 ./usr/share/python/runtime.d/fitgcp.rtupdate
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 208
Build-Time: 18
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 253
Job: fitgcp_0.0.20130418-2
Machine Architecture: armhf
Package: fitgcp
Package-Time: 336
Source-Version: 0.0.20130418-2
Space: 208
Status: successful
Version: 0.0.20130418-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20151012-1025
Build needed 00:05:36, 208k disc space