fastq-pair →
1.0-2 →
armhf → 2021-08-23 18:05:15
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| fastq-pair 1.0-2 (armhf) Mon, 23 Aug 2021 17:58:38 +0000 |
+==============================================================================+
Package: fastq-pair
Version: 1.0-2
Source Version: 1.0-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-033c5d31-ab6a-460c-a86a-28e38c4194e1' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.3 MB]
Fetched 25.6 MB in 29s (875 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'fastq-pair' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/fastq-pair.git
Please use:
git clone https://salsa.debian.org/med-team/fastq-pair.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 222 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main fastq-pair 1.0-2 (dsc) [1983 B]
Get:2 http://172.17.0.1/private bookworm-staging/main fastq-pair 1.0-2 (tar) [217 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main fastq-pair 1.0-2 (diff) [3340 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/fastq-pair-kiACYV/fastq-pair-1.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/fastq-pair-kiACYV' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-h1avSm/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-h1avSm/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-h1avSm/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2936 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake
Filtered Build-Depends: debhelper-compat (= 13), cmake
dpkg-deb: building package 'sbuild-build-depends-fastq-pair-dummy' in '/<<BUILDDIR>>/resolver-h1avSm/apt_archive/sbuild-build-depends-fastq-pair-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-fastq-pair-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ Sources [498 B]
Get:5 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ Packages [579 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install fastq-pair build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbrotli1 libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libicu67 libjsoncpp24 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5
librhash0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl libtool
libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libgpm2 publicsuffix
libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbrotli1 libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libicu67 libjsoncpp24 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5
librhash0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl libtool
libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
sbuild-build-depends-fastq-pair-dummy sensible-utils
0 upgraded, 48 newly installed, 0 to remove and 18 not upgraded.
Need to get 24.5 MB of archives.
After this operation, 97.7 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-h1avSm/apt_archive ./ sbuild-build-depends-fastq-pair-dummy 0.invalid.0 [868 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.36.1-8 [137 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-5 [60.5 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-5 [475 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf cmake-data all 3.18.4-2+rpi1 [1725 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.9.0-3 [151 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.2.10-2 [73.4 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libjsoncpp24 armhf 1.9.4-4 [67.0 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf librhash0 armhf 1.4.1-2 [141 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libuv1 armhf 1.40.0-2 [119 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf cmake armhf 3.18.4-2+rpi1 [3118 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.4.1 [191 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.4.1 [1039 kB]
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Setting up dh-autoreconf (20) ...
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Setting up sbuild-build-depends-fastq-pair-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-13+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.S09zpGxM/trustedkeys.kbx': General error
gpgv: Signature made Wed May 19 09:55:10 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./fastq-pair_1.0-2.dsc
dpkg-source: info: extracting fastq-pair in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking fastq-pair_1.0.orig.tar.gz
dpkg-source: info: unpacking fastq-pair_1.0-2.debian.tar.xz
Check disc space
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User Environment
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APT_CONFIG=/var/lib/sbuild/apt.conf
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TERM=xterm
USER=buildd
dpkg-buildpackage
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dpkg-buildpackage: info: source package fastq-pair
dpkg-buildpackage: info: source version 1.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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dpkg-genbuildinfo --build=any
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dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-08-23T18:05:11Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
fastq-pair_1.0-2_armhf.changes:
-------------------------------
Format: 1.8
Date: Wed, 19 May 2021 15:18:17 +0530
Source: fastq-pair
Binary: fastq-pair fastq-pair-dbgsym
Architecture: armhf
Version: 1.0-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
fastq-pair - Rewrites paired end fastq so all reads have a mate to separate ou
Changes:
fastq-pair (1.0-2) unstable; urgency=medium
.
* Source-only upload for testing migration.
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Checksums-Sha256:
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Files:
a683daca4057be01b71b30d143cdea12 13172 debug optional fastq-pair-dbgsym_1.0-2_armhf.deb
396ebf3d2e3af30915fe227c957e5da2 5597 science optional fastq-pair_1.0-2_armhf.buildinfo
65f7db5feb8564d3dc02a2753e5a3a8d 6960 science optional fastq-pair_1.0-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
fastq-pair-dbgsym_1.0-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 13172 bytes: control archive=536 bytes.
377 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: fastq-pair-dbgsym
Source: fastq-pair
Version: 1.0-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 27
Depends: fastq-pair (= 1.0-2)
Section: debug
Priority: optional
Description: debug symbols for fastq-pair
Build-Ids: a9239dda4c7e52cb7054b4d7c8e3f228c6689f19
drwxr-xr-x root/root 0 2021-05-19 09:48 ./
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/lib/
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/lib/debug/.build-id/a9/
-rw-r--r-- root/root 16532 2021-05-19 09:48 ./usr/lib/debug/.build-id/a9/239dda4c7e52cb7054b4d7c8e3f228c6689f19.debug
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/share/
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-05-19 09:48 ./usr/share/doc/fastq-pair-dbgsym -> fastq-pair
fastq-pair_1.0-2_armhf.deb
--------------------------
new Debian package, version 2.0.
size 6960 bytes: control archive=904 bytes.
844 bytes, 18 lines control
270 bytes, 4 lines md5sums
Package: fastq-pair
Version: 1.0-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 23
Depends: libc6 (>= 2.4)
Section: science
Priority: optional
Homepage: https://github.com/linsalrob/fastq-pair
Description: Rewrites paired end fastq so all reads have a mate to separate out singletons
This package rewrites the fastq files with the sequences in order,
with matching files for the two files provided on the command line,
and then any single reads that are not matched are place in two separate
files, one for each original file.
.
This code is designed to be fast and memory efficient, and works with large
fastq files. It does not store the whole file in memory, but rather just stores
the locations of each of the indices in the first file provided in memory.
drwxr-xr-x root/root 0 2021-05-19 09:48 ./
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/bin/
-rwxr-xr-x root/root 9684 2021-05-19 09:48 ./usr/bin/fastq_pair
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/share/
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/share/doc/fastq-pair/
-rw-r--r-- root/root 218 2021-05-19 09:48 ./usr/share/doc/fastq-pair/changelog.Debian.gz
-rw-r--r-- root/root 1507 2021-04-01 11:44 ./usr/share/doc/fastq-pair/copyright
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/share/man/
drwxr-xr-x root/root 0 2021-05-19 09:48 ./usr/share/man/man1/
-rw-r--r-- root/root 424 2021-05-19 09:48 ./usr/share/man/man1/fastq_pair.1.gz
+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1260
Build-Time: 41
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 299
Job: fastq-pair_1.0-2
Machine Architecture: armhf
Package: fastq-pair
Package-Time: 393
Source-Version: 1.0-2
Space: 1260
Status: successful
Version: 1.0-2
--------------------------------------------------------------------------------
Finished at 2021-08-23T18:05:11Z
Build needed 00:06:33, 1260k disc space