fastani →
1.33-3 →
armhf → 2023-09-24 06:37:50
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| fastani 1.33-3 (armhf) Sun, 24 Sep 2023 06:30:37 +0000 |
+==============================================================================+
Package: fastani
Version: 1.33-3
Source Version: 1.33-3
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-e5785fe3-7bc0-4e1f-bbec-1f3c106b3b6c' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/fastani-5YxPsm/resolver-n03O23' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.6 MB]
Fetched 28.7 MB in 12s (2417 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'fastani' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/fastani.git
Please use:
git clone https://salsa.debian.org/med-team/fastani.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2987 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main fastani 1.33-3 (dsc) [1376 B]
Get:2 http://172.17.4.1/private trixie-staging/main fastani 1.33-3 (tar) [2979 kB]
Get:3 http://172.17.4.1/private trixie-staging/main fastani 1.33-3 (diff) [6712 B]
Fetched 2987 kB in 6s (504 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/fastani-5YxPsm/fastani-1.33' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/fastani-5YxPsm' with '<<BUILDDIR>>'
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| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [465 B]
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgsl-dev libgsl27 libgslcblas0 libicu72
libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf
| gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgsl-dev libgsl27 libgslcblas0 libicu72
libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy
zlib1g-dev
0 upgraded, 34 newly installed, 0 to remove and 16 not upgraded.
Need to get 20.8 MB of archives.
After this operation, 79.9 MB of additional disk space will be used.
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Get:3 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-2 [1033 kB]
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Get:5 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-12 [156 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
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Get:13 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-12 [1201 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libgslcblas0 armhf 2.7.1+dfsg-5 [79.2 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libgsl27 armhf 2.7.1+dfsg-5 [752 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libgsl-dev armhf 2.7.1+dfsg-5 [965 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.6.1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 bsdextrautils_2.39.2-1 bsdutils_1:2.39.2-1 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.6 debianutils_5.13 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-4 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-12 gettext-base_0.21-12 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.23.0-2 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-3 libacl1_2.3.1-3 libapt-pkg6.0_2.6.1 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.6-1 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.40-2+rpi2 libblkid1_2.39.2-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.40-2+rpi2 libctf0_2.40-2+rpi2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdpkg-perl_1.21.22+rpi1 libelf1_0.188-2.1+rpi1 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.7.9-2 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.47-2 libgsl-dev_2.7.1+dfsg-5 libgsl27_2.7.1+dfsg-5 libgslcblas0_2.7.1+dfsg-5 libgssapi-krb5-2_1.20.1-3 libhogweed6_3.9.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1+b2 libisl23_0.26-3 libjansson4_2.14-2 libk5crypto3_1.20.1-3 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-3 libkrb5support0_1.20.1-3 libksba8_1.6.3-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4+20230625-2 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.0-4 libpam-cap_1:2.66-4 libpam-modules_1.5.2-7 libpam-modules-bin_1.5.2-7 libpam-runtime_1.5.2-7 libpam0g_1.5.2-7 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.32_5.32.1-6 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libreadline8_8.2-1.3 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.5-1 libsmartcols1_2.39.2-1 libsqlite3-0_3.43.1-1 libss2_1.47.0-2 libssl1.1_1.1.1o-1 libssl3_3.0.10-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.12-1~deb12u1+rpi1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.12-1~deb12u1+rpi1 libunistring2_1.0-2 libuuid1_2.39.2-1 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.1-1 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.1.38-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 mount_2.39.2-1 nano_7.2-1 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.32_5.32.1-6 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.07-1 tar_1.34+dfsg-1.2 tzdata_2023c-10 usrmerge_37 util-linux_2.39.2-1 util-linux-extra_2.39.2-1 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: fastani
Binary: fastani
Architecture: any
Version: 1.33-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Nilesh Patra <nilesh@debian.org>
Homepage: https://github.com/ParBLiSS/FastANI
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/fastani
Vcs-Git: https://salsa.debian.org/med-team/fastani.git
Testsuite: autopkgtest
Testsuite-Triggers: r-cran-genoplotr
Build-Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev
Package-List:
fastani deb science optional arch=any
Checksums-Sha1:
76fa45e734f13cf63a7f8374735a1befac402aee 2979201 fastani_1.33.orig.tar.gz
3b1dff759ab704c0f1b3a98b92248147921c33ce 6712 fastani_1.33-3.debian.tar.xz
Checksums-Sha256:
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e0f5033cf50f69d7cdb19f3a676c85908809c9a01c5aabb049828e52365e9d92 6712 fastani_1.33-3.debian.tar.xz
Files:
f25b5a704b335ad86c089e4be18c1e23 2979201 fastani_1.33.orig.tar.gz
3af6836300f59c797ce0039f7bfa4c17 6712 fastani_1.33-3.debian.tar.xz
-----BEGIN PGP SIGNATURE-----
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gpgv: Signature made Tue Sep 12 16:57:28 2023 UTC
gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./fastani_1.33-3.dsc: no acceptable signature found
dpkg-source: info: extracting fastani in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking fastani_1.33.orig.tar.gz
dpkg-source: info: unpacking fastani_1.33-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying drop-memcpy-wrapper.patch
dpkg-source: info: applying cross.patch
dpkg-source: info: applying clean-tmp-files.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=cb0b5f3cf8de40c08a0d7553ac14d2c6
JOURNAL_STREAM=8:37174
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-e5785fe3-7bc0-4e1f-bbec-1f3c106b3b6c
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c24229
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package fastani
dpkg-buildpackage: info: source version 1.33-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
configure.ac:59: warning: AC_OUTPUT should be used without arguments.
configure.ac:59: You should run autoupdate.
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking for g++ option to support OpenMP... -fopenmp
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for zlib.h... yes
checking for gsl/gsl_cdf.h... yes
configure: creating ./config.status
config.status: creating Makefile
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -std=c++11 -Isrc -I /usr/local//include -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 src/cgi/core_genome_identity.cpp -o fastANI -L/usr/local//lib -lgsl -lgslcblas -lstdc++ -lz -lm -Wl,-z,relro -Wl,-z,now
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "I: Do nothing, defer this to d/install"
I: Do nothing, defer this to d/install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/fastani/usr/bin/fastANI contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastani/usr/bin/fastANI was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'fastani-dbgsym' in '../fastani-dbgsym_1.33-3_armhf.deb'.
dpkg-deb: building package 'fastani' in '../fastani_1.33-3_armhf.deb'.
dpkg-genbuildinfo --build=any -O../fastani_1.33-3_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../fastani_1.33-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-09-24T06:37:44Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
fastani_1.33-3_armhf.changes:
-----------------------------
Format: 1.8
Date: Tue, 12 Sep 2023 22:24:03 +0530
Source: fastani
Binary: fastani fastani-dbgsym
Architecture: armhf
Version: 1.33-3
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
fastani - Fast alignment-free computation of whole-genome Average Nucleotid
Closes: 1044381
Changes:
fastani (1.33-3) unstable; urgency=medium
.
* Add patch to fix FTBFS with build after
the build (Closes: #1044381)
* Bump Standards-Version to 4.6.2 (no changes needed)
Checksums-Sha1:
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Checksums-Sha256:
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Files:
2e4fbb6a23c1bea76ecae525bd579114 1554060 debug optional fastani-dbgsym_1.33-3_armhf.deb
ea5cece1070248c9df2ccb9a64592ce5 5191 science optional fastani_1.33-3_armhf.buildinfo
08c636f39a0c9b680173dd57a5552aaa 84532 science optional fastani_1.33-3_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: fastani
Binary: fastani fastani-dbgsym
Architecture: armhf
Version: 1.33-3
Checksums-Md5:
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Checksums-Sha1:
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Checksums-Sha256:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sun, 24 Sep 2023 06:37:43 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-13),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.1),
bash (= 5.2.15-2),
binutils (= 2.40-2+rpi2),
binutils-arm-linux-gnueabihf (= 2.40-2+rpi2),
binutils-common (= 2.40-2+rpi2),
bsdextrautils (= 2.39.2-1),
bsdutils (= 1:2.39.2-1),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
coreutils (= 9.1-1),
cpp (= 4:12.2.0-3+rpi1),
cpp-12 (= 12.2.0-14+rpi1),
dash (= 0.5.12-6),
debconf (= 1.5.82),
debhelper (= 13.11.6),
debianutils (= 5.13),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.8-4),
dpkg (= 1.21.22+rpi1),
dpkg-dev (= 1.21.22+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-4),
g++ (= 4:12.2.0-3+rpi1),
g++-12 (= 12.2.0-14+rpi1),
gcc (= 4:12.2.0-3+rpi1),
gcc-12 (= 12.2.0-14+rpi1),
gcc-12-base (= 12.2.0-14+rpi1),
gettext (= 0.21-12),
gettext-base (= 0.21-12),
grep (= 3.8-5),
groff-base (= 1.23.0-2),
gzip (= 1.12-1),
hostname (= 3.23+nmu1),
init-system-helpers (= 1.65.2),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 12.2.0-14+rpi1),
libatomic1 (= 12.2.0-14+rpi1),
libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.1-1),
libaudit1 (= 1:3.1.1-1),
libbinutils (= 2.40-2+rpi2),
libblkid1 (= 2.39.2-1),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.36-9+rpi1+deb12u1),
libc-dev-bin (= 2.36-9+rpi1+deb12u1),
libc6 (= 2.36-9+rpi1+deb12u1),
libc6-dev (= 2.36-9+rpi1+deb12u1),
libcap-ng0 (= 0.8.3-1+b1),
libcap2 (= 1:2.66-4),
libcc1-0 (= 12.2.0-14+rpi1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
libctf-nobfd0 (= 2.40-2+rpi2),
libctf0 (= 2.40-2+rpi2),
libdb5.3 (= 5.3.28+dfsg2-2),
libdebconfclient0 (= 0.270),
libdebhelper-perl (= 13.11.6),
libdpkg-perl (= 1.21.22+rpi1),
libelf1 (= 0.188-2.1+rpi1),
libfile-find-rule-perl (= 0.34-3),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libgcc-12-dev (= 12.2.0-14+rpi1),
libgcc-s1 (= 12.2.0-14+rpi1),
libgcrypt20 (= 1.10.2-2),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libgmp10 (= 2:6.3.0+dfsg-2),
libgomp1 (= 12.2.0-14+rpi1),
libgpg-error0 (= 1.47-2),
libgsl-dev (= 2.7.1+dfsg-5),
libgsl27 (= 2.7.1+dfsg-5),
libgslcblas0 (= 2.7.1+dfsg-5),
libgssapi-krb5-2 (= 1.20.1-3),
libicu72 (= 72.1-3),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libk5crypto3 (= 1.20.1-3),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-3),
libkrb5support0 (= 1.20.1-3),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma5 (= 5.4.4-0.1),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-1),
libmount1 (= 2.39.2-1),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libnumber-compare-perl (= 0.03-3),
libpam-modules (= 1.5.2-7),
libpam-modules-bin (= 1.5.2-7),
libpam-runtime (= 1.5.2-7),
libpam0g (= 1.5.2-7),
libpcre2-8-0 (= 10.42-4),
libperl5.36 (= 5.36.0-7),
libpipeline1 (= 1.5.7-1),
libseccomp2 (= 2.5.4-1+rpi1+b1),
libselinux1 (= 3.5-1),
libsmartcols1 (= 2.39.2-1),
libssl3 (= 3.0.10-1),
libstdc++-12-dev (= 12.2.0-14+rpi1),
libstdc++6 (= 12.2.0-14+rpi1),
libsub-override-perl (= 0.09-4),
libsystemd0 (= 252.12-1~deb12u1+rpi1),
libtext-glob-perl (= 0.11-3),
libtinfo6 (= 6.4+20230625-2),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtool (= 2.4.7-7),
libubsan1 (= 12.2.0-14+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 252.12-1~deb12u1+rpi1),
libunistring2 (= 1.0-2),
libuuid1 (= 2.39.2-1),
libxml2 (= 2.9.14+dfsg-1.3),
libzstd1 (= 1.5.5+dfsg2-1),
linux-libc-dev (= 6.1.38-1+rpi1),
login (= 1:4.13+dfsg1-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.11.2-3),
mawk (= 1.3.4.20230808-1),
ncurses-base (= 6.4+20230625-2),
ncurses-bin (= 6.4+20230625-2),
patch (= 2.7.6-7),
perl (= 5.36.0-7),
perl-base (= 5.36.0-7),
perl-modules-5.36 (= 5.36.0-9),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.07-1),
tar (= 1.34+dfsg-1.2),
usrmerge (= 37),
util-linux (= 2.39.2-1),
xz-utils (= 5.4.4-0.1),
zlib1g (= 1:1.2.13.dfsg-3),
zlib1g-dev (= 1:1.2.13.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1694537643"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
fastani-dbgsym_1.33-3_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 1554060 bytes: control archive=536 bytes.
369 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: fastani-dbgsym
Source: fastani
Version: 1.33-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1579
Depends: fastani (= 1.33-3)
Section: debug
Priority: optional
Description: debug symbols for fastani
Build-Ids: 78e876a76990c4bd29023a47ed01e5fcce5ad41a
drwxr-xr-x root/root 0 2023-09-12 16:54 ./
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/lib/
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/lib/debug/.build-id/78/
-rw-r--r-- root/root 1606100 2023-09-12 16:54 ./usr/lib/debug/.build-id/78/e876a76990c4bd29023a47ed01e5fcce5ad41a.debug
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/share/
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-09-12 16:54 ./usr/share/doc/fastani-dbgsym -> fastani
fastani_1.33-3_armhf.deb
------------------------
new Debian package, version 2.0.
size 84532 bytes: control archive=904 bytes.
677 bytes, 14 lines control
391 bytes, 6 lines md5sums
Package: fastani
Version: 1.33-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 225
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4)
Recommends: r-cran-genoplotr
Section: science
Priority: optional
Homepage: https://github.com/ParBLiSS/FastANI
Description: Fast alignment-free computation of whole-genome Average Nucleotide Identity
ANI is defined as mean nucleotide identity of orthologous gene pairs
shared between two microbial genomes. FastANI supports pairwise comparison
of both complete and draft genome assemblies.
drwxr-xr-x root/root 0 2023-09-12 16:54 ./
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/bin/
-rwxr-xr-x root/root 206344 2023-09-12 16:54 ./usr/bin/fastANI
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/share/
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/share/doc/fastani/
-rw-r--r-- root/root 355 2023-09-12 16:54 ./usr/share/doc/fastani/changelog.Debian.gz
-rw-r--r-- root/root 7206 2023-09-12 16:37 ./usr/share/doc/fastani/copyright
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/share/fastani/
-rwxr-xr-x root/root 1445 2021-04-28 12:28 ./usr/share/fastani/splitDatabase.sh
-rw-r--r-- root/root 934 2021-04-28 12:28 ./usr/share/fastani/visualize.R
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/share/man/
drwxr-xr-x root/root 0 2023-09-12 16:54 ./usr/share/man/man1/
-rw-r--r-- root/root 937 2023-09-12 16:54 ./usr/share/man/man1/fastANI.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 18708
Build-Time: 80
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 302
Job: fastani_1.33-3
Machine Architecture: armhf
Package: fastani
Package-Time: 427
Source-Version: 1.33-3
Space: 18708
Status: successful
Version: 1.33-3
--------------------------------------------------------------------------------
Finished at 2023-09-24T06:37:44Z
Build needed 00:07:07, 18708k disk space