fast5 →
0.6.5-7 →
armhf → 2022-06-28 04:52:51
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| fast5 0.6.5-7 (armhf) Tue, 28 Jun 2022 04:33:52 +0000 |
+==============================================================================+
Package: fast5
Version: 0.6.5-7
Source Version: 0.6.5-7
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-ad8941c6-ca30-438f-b104-6cfd3b527ee7' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/fast5-32yimw/resolver-17FfMD' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.1 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.0 MB]
Fetched 27.1 MB in 11s (2533 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'fast5' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/fast5.git
Please use:
git clone https://salsa.debian.org/med-team/fast5.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 102 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main fast5 0.6.5-7 (dsc) [2339 B]
Get:2 http://172.17.4.1/private bookworm-staging/main fast5 0.6.5-7 (tar) [93.6 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main fast5 0.6.5-7 (diff) [5540 B]
Fetched 102 kB in 0s (982 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/fast5-32yimw/fast5-0.6.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/fast5-32yimw' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [413 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [498 B]
Fetched 1868 B in 0s (48.4 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libboost-python-dev libboost-python1.74-dev
libboost-python1.74.0 libboost1.74-dev libbrotli1 libcurl4
libcurl4-openssl-dev libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu71 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc
libjs-underscore libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1
libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librtmp1
libsigsegv2 libssh2-1 libssl-dev libsub-override-perl libsz2 libtool
libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-all
python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-pkg-resources python3-setuptools python3.10
python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit
python3-build python3-tomli python3-installer gettext-doc libasprintf-dev
libgettextpo-dev groff libboost1.74-doc gccxml libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-random1.74-dev
libboost-regex1.74-dev libboost-serialization1.74-dev
libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev
libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev
libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev
libboost-nowide1.74-dev libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev pkg-config libhdf5-doc libssl-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc
python3.10-venv python3.10-doc binfmt-support python3.9-venv python3.9-doc
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl javascript-common
publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libboost-python-dev libboost-python1.74-dev
libboost-python1.74.0 libboost1.74-dev libbrotli1 libcurl4
libcurl4-openssl-dev libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu71 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc
libjs-underscore libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1
libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librtmp1
libsigsegv2 libssh2-1 libssl-dev libsub-override-perl libsz2 libtool
libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-all
python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-pkg-resources python3-setuptools python3.10
python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 94 newly installed, 0 to remove and 6 not upgraded.
Need to get 59.2 MB of archives.
After this operation, 335 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.5-1+b1 [815 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.5-1+b1 [1637 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.4-1+b1 [38.9 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.5-1+b1 [1626 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.5-1+b1 [542 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.4-1+b1 [21.9 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.4-1+b1 [38.4 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.13-1+rpi1 [798 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.13-1+rpi1 [1597 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-1 [33.7 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.30-1 [1585 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7.1 [195 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7.1 [1071 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.12-1 [79.9 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.12-1 [146 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220403 [113 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.7+repack-4+rpi1+b1 [43.2 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-16 [9536 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libboost-python1.74.0 armhf 1.74.0-16 [311 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.5-1+b1 [1456 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.8-1 [137 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4+b2 [183 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.5-1+b1 [2987 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.4-1+b1 [22.2 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.5-1+b1 [508 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.3~dfsg+~1.11.4-1 [116 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-4 [142 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.4-1+b1 [25.4 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libboost-python1.74-dev armhf 1.74.0-16 [324 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libboost-python-dev armhf 1.74.0.3+b4 [4904 B]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.47.0-1+b1 [65.3 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.83.1-2 [317 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-openssl-dev armhf 7.83.1-2 [394 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.1.0-2+rpi1 [238 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-4+rpi1+b1 [1240 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.7+repack-4+rpi1+b1 [132 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-fortran-102 armhf 1.10.7+repack-4+rpi1+b1 [97.4 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-4+rpi1+b1 [82.4 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.7+repack-4+rpi1+b1 [54.2 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.7+repack-4+rpi1+b1 [40.3 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libssl-dev armhf 3.0.3-8 [2123 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-dev armhf 1.10.7+repack-4+rpi1+b1 [2208 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.13-1+rpi1 [1611 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.13-1+rpi1 [1419 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.13-1+rpi1 [3003 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.4-1+b1 [1080 B]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.13-1+rpi1 [496 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.4-1+b1 [1072 B]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.13-1+rpi1 [501 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.4-1+b1 [1084 B]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
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Setting up libboost-python1.74-dev (1.74.0-16) ...
Setting up libboost-python-dev (1.74.0.3+b4) ...
Setting up libhdf5-dev (1.10.7+repack-4+rpi1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.38-4+rpi1 dpkg-dev_1.21.8+rpi1 g++-11_11.3.0-1+rpi1 gcc-11_11.3.0-1+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.3.0-1+rpi1 libstdc++6_12.1.0-2+rpi1 linux-libc-dev_5.18.2-1+rpi1
Package versions: adduser_3.121 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6.1 binutils_2.38-4+rpi1 binutils-arm-linux-gnueabihf_2.38-4+rpi1 binutils-common_2.38-4+rpi1 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.3.0-1+rpi1 cython3_0.29.30-1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7.1 debianutils_5.7-0.2 dh-autoreconf_20 dh-python_5.20220403 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.35-2 dpkg_1.21.8+rpi1 dpkg-dev_1.21.8+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:11.2.0-2+rpi1 g++-11_11.3.0-1+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.3.0-1+rpi1 gcc-11-base_11.3.0-1+rpi1 gcc-12-base_12.1.0-2+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gnupg_2.2.35-2 gnupg-l10n_2.2.35-2 gnupg-utils_2.2.35-2 gpg_2.2.35-2 gpg-agent_2.2.35-2 gpg-wks-client_2.2.35-2 gpg-wks-server_2.2.35-2 gpgconf_2.2.35-2 gpgsm_2.2.35-2 gpgv_2.2.35-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hdf5-helpers_1.10.7+repack-4+rpi1+b1 hostname_3.23 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.19.2-2 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapt-pkg6.0_2.5.0 libarchive-zip-perl_1.68-1 libasan6_11.3.0-1+rpi1 libassuan0_2.5.5-3 libatomic1_12.1.0-2+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38-4+rpi1 libblkid1_2.38-4 libboost-python-dev_1.74.0.3+b4 libboost-python1.74-dev_1.74.0-16 libboost-python1.74.0_1.74.0-16 libboost1.74-dev_1.74.0-16 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcap-ng0_0.7.9-2.2+b2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.1.0-2+rpi1 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libicu71_71.1-3 libidn2-0_2.3.2-2 libisl23_0.24-2 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc_4.5.0-4 libjs-underscore_1.13.3~dfsg+~1.11.4-1 libk5crypto3_1.19.2-2+b7 libkeyutils1_1.6.1-3+rpi1 libkrb5-3_1.19.2-2+b7 libkrb5support0_1.19.2-2+b7 libksba8_1.6.0-2 libldap-2.5-0_2.5.12+dfsg-2 liblz4-1_1.9.3-2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1 libnghttp2-14_1.47.0-1+b1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.4.0-13 libpam-modules-bin_1.4.0-13 libpam-runtime_1.4.0-13 libpam0g_1.4.0-13 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.32_5.32.1-6 libperl5.34_5.34.0-4 libpipeline1_1.5.6-1 libpsl5_0.21.0-1.2 libpython3-all-dev_3.10.4-1+b1 libpython3-dev_3.10.4-1+b1 libpython3-stdlib_3.10.4-1+b1 libpython3.10_3.10.5-1+b1 libpython3.10-dev_3.10.5-1+b1 libpython3.10-minimal_3.10.5-1+b1 libpython3.10-stdlib_3.10.5-1+b1 libpython3.9_3.9.13-1+rpi1 libpython3.9-dev_3.9.13-1+rpi1 libpython3.9-minimal_3.9.13-1+rpi1 libpython3.9-stdlib_3.9.13-1+rpi1 libreadline8_8.1.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-6+b1 libsasl2-modules-db_2.1.28+dfsg-6+b1 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsigsegv2_2.14-1 libsmartcols1_2.38-4 libsqlite3-0_3.38.5-1 libss2_1.46.5-2 libssh2-1_1.10.0-3+b1 libssl-dev_3.0.3-8 libssl1.1_1.1.1o-1 libssl3_3.0.3-8 libstdc++-11-dev_11.3.0-1+rpi1 libstdc++6_12.1.0-2+rpi1 libsub-override-perl_0.09-3 libsystemd0_250.4-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.7-4 libubsan1_12.1.0-2+rpi1 libuchardet0_0.0.7-1 libudev1_250.4-1+rpi1 libunistring2_1.0-1 libuuid1_2.38-4 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.2-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38-4 nano_6.3-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-4 perl-base_5.34.0-4 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-4 pinentry-curses_1.2.0-1 po-debconf_1.0.21+nmu1 python3_3.10.4-1+b1 python3-all_3.10.4-1+b1 python3-all-dev_3.10.4-1+b1 python3-dev_3.10.4-1+b1 python3-distutils_3.9.12-1 python3-lib2to3_3.9.12-1 python3-minimal_3.10.4-1+b1 python3-pkg-resources_59.6.0-1.2 python3-setuptools_59.6.0-1.2 python3.10_3.10.5-1+b1 python3.10-dev_3.10.5-1+b1 python3.10-minimal_3.10.5-1+b1 python3.9_3.9.13-1+rpi1 python3.9-dev_3.9.13-1+rpi1 python3.9-minimal_3.9.13-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 util-linux_2.38-4 util-linux-extra_2.38-4 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4+b2 zlib1g-dev_1:1.2.11.dfsg-4+b2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: fast5
Binary: fast5, libfast5-dev, python3-fast5
Architecture: any all
Version: 0.6.5-7
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/mateidavid/fast5
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/fast5
Vcs-Git: https://salsa.debian.org/med-team/fast5.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential
Build-Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper
Package-List:
fast5 deb science optional arch=all
libfast5-dev deb libdevel optional arch=all
python3-fast5 deb python optional arch=any
Checksums-Sha1:
21d1ddf5cb3cd0d426dab82480bfc0ef6a52d21e 93639 fast5_0.6.5.orig.tar.gz
b90197ca7031ef7ea467a5393ae2acf00288bcbd 5540 fast5_0.6.5-7.debian.tar.xz
Checksums-Sha256:
f8b1ce2c07adb56b4f13337ef008e124255f86cdb7e74e4233afa8dca878ee1a 93639 fast5_0.6.5.orig.tar.gz
6e185bce0f949314730c845bcb6379d50207767a5668977c4ca147baab53eaf4 5540 fast5_0.6.5-7.debian.tar.xz
Files:
8fa84e045b0b775239413248f7bf5e83 93639 fast5_0.6.5.orig.tar.gz
1fe998234bedbf8ee1ed33936ea7ab7c 5540 fast5_0.6.5-7.debian.tar.xz
Dgit: f7489d191658689508236b1064eb0f624bb88ca3 debian archive/debian/0.6.5-7 https://git.dgit.debian.org/fast5
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.Q0NKOMph/trustedkeys.kbx': General error
gpgv: Signature made Sun Jun 26 12:57:04 2022 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./fast5_0.6.5-7.dsc
dpkg-source: info: extracting fast5 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking fast5_0.6.5.orig.tar.gz
dpkg-source: info: unpacking fast5_0.6.5-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying rpath.patch
dpkg-source: info: applying gcc-12.patch
dpkg-source: info: applying build-flags.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=7b33f05927d544f8acb7289c691791af
JOURNAL_STREAM=8:24067
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-ad8941c6-ca30-438f-b104-6cfd3b527ee7
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c97415
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package fast5
dpkg-buildpackage: info: source version 0.6.5-7
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp
debian/rules clean
dh clean --with python3 --buildsystem=pybuild \
--sourcedirectory=python
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh_auto_clean
I: pybuild base:239: python3.9 setup.py clean
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/python/fast5/fast5.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling fast5/fast5.pyx because it changed.
[1/1] Cythonizing fast5/fast5.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_fast5/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
I: pybuild base:239: python3.10 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_fast5/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
rm -rf python/fast5/fast5.cpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=python
dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild \
--sourcedirectory=python
dh_update_autotools_config -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_autoreconf -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_auto_configure -a -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:239: python3.9 setup.py config
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/python/fast5/fast5.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling fast5/fast5.pyx because it changed.
[1/1] Cythonizing fast5/fast5.pyx
running config
I: pybuild base:239: python3.10 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:239: /usr/bin/python3.9 setup.py build
running build
running build_ext
building 'fast5' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/fast5
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.9 -c fast5/fast5.cpp -o build/temp.linux-armhf-3.9/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial
In file included from /usr/include/c++/11/vector:72,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/11/vector:67,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/vector.tcc: In static member function ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const string&, const std::vector<fast5::EventDetection_Event>&, const string&, const fast5::Channel_Id_Params&, double, unsigned int)’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/vector.tcc: In static member function ‘static fast5::EventDetection_Events_Pack fast5::File::pack_ed(const EventDetection_Events_Dataset&)’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In static member function ‘static const hdf5_tools::Compound_Map& fast5::Basecall_Event::compound_map()’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In static member function ‘static const hdf5_tools::Compound_Map& fast5::Basecall_Alignment_Entry::compound_map()’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In static member function ‘static const hdf5_tools::Compound_Map& fast5::Basecall_Model_State::compound_map()’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_fast5/build/fast5.cpython-39-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.9
copying and adjusting bin/f5ls -> build/scripts-3.9
copying and adjusting bin/f5pack -> build/scripts-3.9
changing mode of build/scripts-3.9/f5ls from 644 to 755
changing mode of build/scripts-3.9/f5pack from 644 to 755
I: pybuild base:239: /usr/bin/python3 setup.py build
running build
running build_ext
building 'fast5' extension
creating build/temp.linux-armhf-3.10
creating build/temp.linux-armhf-3.10/fast5
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.10 -c fast5/fast5.cpp -o build/temp.linux-armhf-3.10/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial
In file included from /usr/include/c++/11/vector:72,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/11/vector:67,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/stl_vector.h: In member function ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/vector.tcc: In static member function ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const string&, const std::vector<fast5::EventDetection_Event>&, const string&, const fast5::Channel_Id_Params&, double, unsigned int)’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/vector.tcc: In static member function ‘static fast5::EventDetection_Events_Pack fast5::File::pack_ed(const EventDetection_Events_Dataset&)’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from fast5/fast5.cpp:767:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In static member function ‘static const hdf5_tools::Compound_Map& fast5::Basecall_Event::compound_map()’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In static member function ‘static const hdf5_tools::Compound_Map& fast5::Basecall_Alignment_Entry::compound_map()’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In static member function ‘static const hdf5_tools::Compound_Map& fast5::Basecall_Model_State::compound_map()’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_fast5/build/fast5.cpython-310-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.10
copying and adjusting bin/f5ls -> build/scripts-3.10
copying and adjusting bin/f5pack -> build/scripts-3.10
changing mode of build/scripts-3.10/f5ls from 644 to 755
changing mode of build/scripts-3.10/f5pack from 644 to 755
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o f5ls f5ls.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/11/vector:67,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/11/vector:66,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = std::allocator<long long int>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = std::allocator<fast5::EventDetection_Event>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = std::allocator<fast5::Basecall_Event>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = std::allocator<fast5::Basecall_Alignment_Entry>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*; _Tp = long long int]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = std::allocator<fast5::Basecall_Model_State>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
108 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:110:27: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
110 | { return std::copy(__first, __last, __result); }
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
108 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:110:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
110 | { return std::copy(__first, __last, __result); }
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
108 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:110:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
110 | { return std::copy(__first, __last, __result); }
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
108 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:110:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
110 | { return std::copy(__first, __last, __result); }
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/11/bits/stl_uninitialized.h:85:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
85 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:85:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/11/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<long long int*>; _OI = long long int*]’:
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
611 | copy(_II __first, _II __last, _OI __result)
| ^~~~
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::EventDetection_Event*>; _OI = fast5::EventDetection_Event*]’:
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Event*>; _OI = fast5::Basecall_Event*]’:
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _OI = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/11/vector:66,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
108 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:110:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
110 | { return std::copy(__first, __last, __result); }
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/bits/stl_algobase.h:67,
from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/11/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = long long int*]’:
/usr/include/c++/11/bits/stl_iterator.h:2359:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
2359 | __miter_base(move_iterator<_Iterator> __it)
| ^~~~~~~~~~~~
/usr/include/c++/11/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’:
/usr/include/c++/11/bits/stl_iterator.h:2359:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’:
/usr/include/c++/11/bits/stl_iterator.h:2359:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/11/bits/stl_iterator.h:2359:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/11/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Model_State*>; _OI = fast5::Basecall_Model_State*]’:
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
611 | copy(_II __first, _II __last, _OI __result)
| ^~~~
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
In file included from /usr/include/c++/11/bits/stl_algobase.h:67,
from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/11/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/11/bits/stl_iterator.h:2359:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
2359 | __miter_base(move_iterator<_Iterator> __it)
| ^~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o f5ls-full f5ls-full.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/11/vector:67,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/11/vector:66,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = std::allocator<long long int>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = std::allocator<fast5::EventDetection_Event>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = std::allocator<fast5::Basecall_Event>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = std::allocator<fast5::Basecall_Alignment_Entry>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*; _Tp = long long int]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = std::allocator<fast5::Basecall_Model_State>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
108 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:110:27: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
110 | { return std::copy(__first, __last, __result); }
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
108 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:110:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
110 | { return std::copy(__first, __last, __result); }
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
108 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:110:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
110 | { return std::copy(__first, __last, __result); }
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
108 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:110:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
110 | { return std::copy(__first, __last, __result); }
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/11/bits/stl_uninitialized.h:85:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
85 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:85:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/11/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<long long int*>; _OI = long long int*]’:
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
611 | copy(_II __first, _II __last, _OI __result)
| ^~~~
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::EventDetection_Event*>; _OI = fast5::EventDetection_Event*]’:
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Event*>; _OI = fast5::Basecall_Event*]’:
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _OI = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/11/vector:66,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
108 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:108:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:110:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
110 | { return std::copy(__first, __last, __result); }
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/bits/stl_algobase.h:67,
from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/11/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = long long int*]’:
/usr/include/c++/11/bits/stl_iterator.h:2359:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
2359 | __miter_base(move_iterator<_Iterator> __it)
| ^~~~~~~~~~~~
/usr/include/c++/11/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’:
/usr/include/c++/11/bits/stl_iterator.h:2359:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’:
/usr/include/c++/11/bits/stl_iterator.h:2359:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/11/bits/stl_iterator.h:2359:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/11/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Model_State*>; _OI = fast5::Basecall_Model_State*]’:
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
611 | copy(_II __first, _II __last, _OI __result)
| ^~~~
/usr/include/c++/11/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
In file included from /usr/include/c++/11/bits/stl_algobase.h:67,
from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/11/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/11/bits/stl_iterator.h:2359:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
2359 | __miter_base(move_iterator<_Iterator> __it)
| ^~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o hdf5-mod hdf5-mod.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/11/vector:72,
from /<<PKGBUILDDIR>>/src/../include/fast5/hdf5_tools.hpp:21,
from hdf5-mod.cpp:12:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, const hdf5_tools::Compound_Map*&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, const hdf5_tools::Compound_Map*&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/11/vector:66,
from /<<PKGBUILDDIR>>/src/../include/fast5/hdf5_tools.hpp:21,
from hdf5-mod.cpp:12:
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/11/bits/stl_uninitialized.h:85:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
85 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:85:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o f5-mod f5-mod.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/11/vector:72,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5-mod.cpp:12:
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/11/vector:66,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5-mod.cpp:12:
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/11/bits/stl_uninitialized.h:355:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
354 | return std::__uninitialized_copy_a
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
355 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
356 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
331 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:331:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:333:37: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
333 | { return std::uninitialized_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
126 | uninitialized_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:126:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/11/bits/stl_uninitialized.h:151:22: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
148 | return std::__uninitialized_copy<__is_trivial(_ValueType1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
149 | && __is_trivial(_ValueType2)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150 | && __assignable>::
| ~~~~~~~~~~~~~~~~~~
151 | __uninit_copy(__first, __last, __result);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/11/bits/stl_uninitialized.h:85:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
85 | __uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_uninitialized.h:85:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_prep -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_auto_install -a -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:239: /usr/bin/python3.9 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-fast5
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.9/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_fast5/build/fast5.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.9/dist-packages
running install_egg_info
running egg_info
creating fast5.egg-info
writing fast5.egg-info/PKG-INFO
writing dependency_links to fast5.egg-info/dependency_links.txt
writing top-level names to fast5.egg-info/top_level.txt
writing manifest file 'fast5.egg-info/SOURCES.txt'
reading manifest file 'fast5.egg-info/SOURCES.txt'
writing manifest file 'fast5.egg-info/SOURCES.txt'
Copying fast5.egg-info to /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.9/dist-packages/fast5-0.6.2.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.9/f5ls -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.9/f5pack -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5ls to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5pack to 755
I: pybuild base:239: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-fast5
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.10/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_fast5/build/fast5.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.10/dist-packages
running install_egg_info
running egg_info
writing fast5.egg-info/PKG-INFO
writing dependency_links to fast5.egg-info/dependency_links.txt
writing top-level names to fast5.egg-info/top_level.txt
reading manifest file 'fast5.egg-info/SOURCES.txt'
writing manifest file 'fast5.egg-info/SOURCES.txt'
Copying fast5.egg-info to /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.10/dist-packages/fast5-0.6.2.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.10/f5ls -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.10/f5pack -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5ls to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5pack to 755
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mkdir -p debian/fast5/usr/bin/
mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installchangelogs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installexamples -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_python3 -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installsystemduser -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_perl -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_link -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_strip_nondeterminism -a -O--buildsystem=pybuild -O--sourcedirectory=python
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh_compress -X .cpp -X .hpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_missing -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_dwz -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installdeb -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_gencontrol -a -O--buildsystem=pybuild -O--sourcedirectory=python
dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_builddeb -a -O--buildsystem=pybuild -O--sourcedirectory=python
dpkg-deb: building package 'python3-fast5-dbgsym' in '../python3-fast5-dbgsym_0.6.5-7_armhf.deb'.
dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.5-7_armhf.deb'.
dpkg-genbuildinfo --build=any -O../fast5_0.6.5-7_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../fast5_0.6.5-7_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-06-28T04:52:43Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
fast5_0.6.5-7_armhf.changes:
----------------------------
Format: 1.8
Date: Sun, 26 Jun 2022 14:41:32 +0200
Source: fast5
Binary: python3-fast5 python3-fast5-dbgsym
Architecture: armhf
Version: 0.6.5-7
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3
Closes: 1012919
Changes:
fast5 (0.6.5-7) unstable; urgency=medium
.
* d/control: add myself to uploaders.
* Add gcc-12.patch: fix ftbfs with gcc-12. (Closes: #1012919)
* Standards-Version: 4.6.1 (routine-update)
* Add build-flags.patch: propagate standard debian build flags.
* d/rules: remove redundant build flag setting.
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Files:
4dd8a87e24238e1188678a20da0fb6e1 7598 science optional fast5_0.6.5-7_armhf.buildinfo
0f7785a2ed7319d3c080f5293225ce18 5160044 debug optional python3-fast5-dbgsym_0.6.5-7_armhf.deb
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: fast5
Binary: python3-fast5 python3-fast5-dbgsym
Architecture: armhf
Version: 0.6.5-7
Checksums-Md5:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Tue, 28 Jun 2022 04:52:41 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-6),
autotools-dev (= 20220109.1),
base-files (= 12.2+rpi1),
base-passwd (= 3.5.52),
bash (= 5.1-6.1),
binutils (= 2.38-4+rpi1),
binutils-arm-linux-gnueabihf (= 2.38-4+rpi1),
binutils-common (= 2.38-4+rpi1),
bsdextrautils (= 2.38-4),
bsdutils (= 1:2.38-4),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
coreutils (= 8.32-4.1),
cpp (= 4:11.2.0-2+rpi1),
cpp-11 (= 11.3.0-1+rpi1),
cython3 (= 0.29.30-1),
dash (= 0.5.11+git20210903+057cd650a4ed-8),
debconf (= 1.5.79),
debhelper (= 13.7.1),
debianutils (= 5.7-0.2),
dh-autoreconf (= 20),
dh-python (= 5.20220403),
dh-strip-nondeterminism (= 1.13.0-1),
diffutils (= 1:3.7-5),
dpkg (= 1.21.8+rpi1),
dpkg-dev (= 1.21.8+rpi1),
dwz (= 0.14-1),
file (= 1:5.41-4),
findutils (= 4.9.0-3),
g++ (= 4:11.2.0-2+rpi1),
g++-11 (= 11.3.0-1+rpi1),
gcc (= 4:11.2.0-2+rpi1),
gcc-11 (= 11.3.0-1+rpi1),
gcc-11-base (= 11.3.0-1+rpi1),
gcc-12-base (= 12.1.0-2+rpi1),
gettext (= 0.21-6),
gettext-base (= 0.21-6),
grep (= 3.7-1),
groff-base (= 1.22.4-8),
gzip (= 1.12-1),
hdf5-helpers (= 1.10.7+repack-4+rpi1+b1),
hostname (= 3.23),
init-system-helpers (= 1.63),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.3.1-1),
libaec-dev (= 1.0.6-1),
libaec0 (= 1.0.6-1),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 11.3.0-1+rpi1),
libatomic1 (= 12.1.0-2+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.7-1),
libaudit1 (= 1:3.0.7-1+b1),
libbinutils (= 2.38-4+rpi1),
libblkid1 (= 2.38-4),
libboost-python-dev (= 1.74.0.3+b4),
libboost-python1.74-dev (= 1.74.0-16),
libboost-python1.74.0 (= 1.74.0-16),
libboost1.74-dev (= 1.74.0-16),
libbrotli1 (= 1.0.9-2+b2),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.33-7+rpi1),
libc-dev-bin (= 2.33-7+rpi1),
libc6 (= 2.33-7+rpi1),
libc6-dev (= 2.33-7+rpi1),
libcap-ng0 (= 0.7.9-2.2+b2),
libcap2 (= 1:2.44-1),
libcc1-0 (= 12.1.0-2+rpi1),
libcom-err2 (= 1.46.5-2),
libcrypt-dev (= 1:4.4.27-1.1),
libcrypt1 (= 1:4.4.27-1.1),
libctf-nobfd0 (= 2.38-4+rpi1),
libctf0 (= 2.38-4+rpi1),
libcurl4 (= 7.83.1-2),
libcurl4-openssl-dev (= 7.83.1-2),
libdb5.3 (= 5.3.28+dfsg1-0.9),
libdebconfclient0 (= 0.263),
libdebhelper-perl (= 13.7.1),
libdpkg-perl (= 1.21.8+rpi1),
libelf1 (= 0.187-1),
libexpat1 (= 2.4.8-1),
libexpat1-dev (= 2.4.8-1),
libffi8 (= 3.4.2-4),
libfile-stripnondeterminism-perl (= 1.13.0-1),
libgcc-11-dev (= 11.3.0-1+rpi1),
libgcc-s1 (= 12.1.0-2+rpi1),
libgcrypt20 (= 1.10.1-2+b2),
libgdbm-compat4 (= 1.23-1),
libgdbm6 (= 1.23-1),
libgfortran5 (= 12.1.0-2+rpi1),
libgmp10 (= 2:6.2.1+dfsg1-1),
libgnutls30 (= 3.7.4-2),
libgomp1 (= 12.1.0-2+rpi1),
libgpg-error0 (= 1.45-2),
libgssapi-krb5-2 (= 1.19.2-2+b7),
libhdf5-103-1 (= 1.10.7+repack-4+rpi1+b1),
libhdf5-cpp-103-1 (= 1.10.7+repack-4+rpi1+b1),
libhdf5-dev (= 1.10.7+repack-4+rpi1+b1),
libhdf5-fortran-102 (= 1.10.7+repack-4+rpi1+b1),
libhdf5-hl-100 (= 1.10.7+repack-4+rpi1+b1),
libhdf5-hl-cpp-100 (= 1.10.7+repack-4+rpi1+b1),
libhdf5-hl-fortran-100 (= 1.10.7+repack-4+rpi1+b1),
libhogweed6 (= 3.7.3-1),
libicu71 (= 71.1-3),
libidn2-0 (= 2.3.2-2),
libisl23 (= 0.24-2),
libjpeg-dev (= 1:2.1.2-1),
libjpeg62-turbo (= 1:2.1.2-1),
libjpeg62-turbo-dev (= 1:2.1.2-1),
libjs-jquery (= 3.6.0+dfsg+~3.5.13-1),
libjs-sphinxdoc (= 4.5.0-4),
libjs-underscore (= 1.13.3~dfsg+~1.11.4-1),
libk5crypto3 (= 1.19.2-2+b7),
libkeyutils1 (= 1.6.1-3+rpi1),
libkrb5-3 (= 1.19.2-2+b7),
libkrb5support0 (= 1.19.2-2+b7),
libldap-2.5-0 (= 2.5.12+dfsg-2),
liblz4-1 (= 1.9.3-2),
liblzma5 (= 5.2.5-2.1),
libmagic-mgc (= 1:5.41-4),
libmagic1 (= 1:5.41-4),
libmount1 (= 2.38-4),
libmpc3 (= 1.2.1-2),
libmpdec3 (= 2.5.1-2+rpi1),
libmpfr6 (= 4.1.0-3),
libncursesw6 (= 6.3+20220423-2),
libnettle8 (= 3.7.3-1),
libnghttp2-14 (= 1.47.0-1+b1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.24.1-1),
libpam-modules (= 1.4.0-13),
libpam-modules-bin (= 1.4.0-13),
libpam-runtime (= 1.4.0-13),
libpam0g (= 1.4.0-13),
libpcre2-8-0 (= 10.40-1+b2),
libpcre3 (= 2:8.39-14),
libperl5.34 (= 5.34.0-4),
libpipeline1 (= 1.5.6-1),
libpsl5 (= 0.21.0-1.2),
libpython3-all-dev (= 3.10.4-1+b1),
libpython3-dev (= 3.10.4-1+b1),
libpython3-stdlib (= 3.10.4-1+b1),
libpython3.10 (= 3.10.5-1+b1),
libpython3.10-dev (= 3.10.5-1+b1),
libpython3.10-minimal (= 3.10.5-1+b1),
libpython3.10-stdlib (= 3.10.5-1+b1),
libpython3.9 (= 3.9.13-1+rpi1),
libpython3.9-dev (= 3.9.13-1+rpi1),
libpython3.9-minimal (= 3.9.13-1+rpi1),
libpython3.9-stdlib (= 3.9.13-1+rpi1),
libreadline8 (= 8.1.2-1.2),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg-6+b1),
libsasl2-modules-db (= 2.1.28+dfsg-6+b1),
libseccomp2 (= 2.5.4-1+rpi1),
libselinux1 (= 3.4-1),
libsigsegv2 (= 2.14-1),
libsmartcols1 (= 2.38-4),
libsqlite3-0 (= 3.38.5-1),
libssh2-1 (= 1.10.0-3+b1),
libssl-dev (= 3.0.3-8),
libssl3 (= 3.0.3-8),
libstdc++-11-dev (= 11.3.0-1+rpi1),
libstdc++6 (= 12.1.0-2+rpi1),
libsub-override-perl (= 0.09-3),
libsystemd0 (= 250.4-1+rpi1),
libsz2 (= 1.0.6-1),
libtasn1-6 (= 4.18.0-4),
libtinfo6 (= 6.3+20220423-2),
libtirpc-common (= 1.3.2-2),
libtirpc-dev (= 1.3.2-2),
libtirpc3 (= 1.3.2-2),
libtool (= 2.4.7-4),
libubsan1 (= 12.1.0-2+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 250.4-1+rpi1),
libunistring2 (= 1.0-1),
libuuid1 (= 2.38-4),
libxml2 (= 2.9.14+dfsg-1),
libzstd1 (= 1.5.2+dfsg-1),
linux-libc-dev (= 5.18.2-1+rpi1),
login (= 1:4.11.1+dfsg1-2),
lsb-base (= 11.2+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4.1),
man-db (= 2.10.2-1),
mawk (= 1.3.4.20200120-3.1),
media-types (= 8.0.0),
ncurses-base (= 6.3+20220423-2),
ncurses-bin (= 6.3+20220423-2),
patch (= 2.7.6-7),
perl (= 5.34.0-4),
perl-base (= 5.34.0-4),
perl-modules-5.34 (= 5.34.0-4),
po-debconf (= 1.0.21+nmu1),
python3 (= 3.10.4-1+b1),
python3-all (= 3.10.4-1+b1),
python3-all-dev (= 3.10.4-1+b1),
python3-dev (= 3.10.4-1+b1),
python3-distutils (= 3.9.12-1),
python3-lib2to3 (= 3.9.12-1),
python3-minimal (= 3.10.4-1+b1),
python3-pkg-resources (= 59.6.0-1.2),
python3-setuptools (= 59.6.0-1.2),
python3.10 (= 3.10.5-1+b1),
python3.10-dev (= 3.10.5-1+b1),
python3.10-minimal (= 3.10.5-1+b1),
python3.9 (= 3.9.13-1+rpi1),
python3.9-dev (= 3.9.13-1+rpi1),
python3.9-minimal (= 3.9.13-1+rpi1),
readline-common (= 8.1.2-1.2),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sysvinit-utils (= 3.03-1),
tar (= 1.34+dfsg-1),
tzdata (= 2022a-1),
util-linux (= 2.38-4),
util-linux-extra (= 2.38-4),
xz-utils (= 5.2.5-2.1),
zlib1g (= 1:1.2.11.dfsg-4+b2),
zlib1g-dev (= 1:1.2.11.dfsg-4+b2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1656247292"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-fast5-dbgsym_0.6.5-7_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 5160044 bytes: control archive=668 bytes.
445 bytes, 13 lines control
305 bytes, 3 lines md5sums
Package: python3-fast5-dbgsym
Source: fast5
Version: 0.6.5-7
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5467
Depends: python3-fast5 (= 0.6.5-7)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for python3-fast5
Build-Ids: a33d727a9bf390c1ab6aad3aa7c86198bb08c56a c01c5abdffa85cbb0e9b21969a63e262d55a4320
drwxr-xr-x root/root 0 2022-06-26 12:41 ./
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/debug/.build-id/a3/
-rw-r--r-- root/root 2662696 2022-06-26 12:41 ./usr/lib/debug/.build-id/a3/3d727a9bf390c1ab6aad3aa7c86198bb08c56a.debug
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/debug/.build-id/c0/
-rw-r--r-- root/root 2666608 2022-06-26 12:41 ./usr/lib/debug/.build-id/c0/1c5abdffa85cbb0e9b21969a63e262d55a4320.debug
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 253580 2022-06-26 12:41 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-fast5.debug
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-06-26 12:41 ./usr/share/doc/python3-fast5-dbgsym -> python3-fast5
python3-fast5_0.6.5-7_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 238308 bytes: control archive=928 bytes.
605 bytes, 16 lines control
662 bytes, 7 lines md5sums
Package: python3-fast5
Source: fast5
Version: 0.6.5-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1304
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libhdf5-103-1, libstdc++6 (>= 11), python3 (<< 3.11), python3 (>= 3.9~)
Section: python
Priority: optional
Multi-Arch: same
Homepage: https://github.com/mateidavid/fast5
Description: library for reading Oxford Nanopore Fast5 files -- Python 3
A lightweight C++11 library to read raw signal data from Oxford
Nanopore's FAST5 files.
.
This package provides the Python 3 library
drwxr-xr-x root/root 0 2022-06-26 12:41 ./
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/
-rw-r--r-- root/root 267 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt
-rw-r--r-- root/root 6 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/top_level.txt
-rw-r--r-- root/root 657524 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root 657524 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5.cpython-39-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/doc/python3-fast5/
-rw-r--r-- root/root 2346 2022-06-26 12:41 ./usr/share/doc/python3-fast5/changelog.Debian.gz
-rw-r--r-- root/root 1440 2022-06-26 12:41 ./usr/share/doc/python3-fast5/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 58684
Build-Time: 365
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 735
Job: fast5_0.6.5-7
Machine Architecture: armhf
Package: fast5
Package-Time: 1131
Source-Version: 0.6.5-7
Space: 58684
Status: successful
Version: 0.6.5-7
--------------------------------------------------------------------------------
Finished at 2022-06-28T04:52:43Z
Build needed 00:18:51, 58684k disk space